BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3383
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95373|IPO7_HUMAN Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1
Length = 1038
Score = 206 bits (524), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 88/152 (57%), Positives = 110/152 (72%)
Query: 1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
+EI + V R VP TL ++ED+R + PWWKCKKWALHIL+R+FERYGSPG V +Y EF
Sbjct: 229 IEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEF 288
Query: 61 ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
A +LK F+ G+ VLL L QY+ Y++PRV+QQ LNY+ Q V H W LKPH
Sbjct: 289 AEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALTWKNLKPHIQG 348
Query: 121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
IIQ+V+FP + YTDADEELW DP+EYIR+KF
Sbjct: 349 IIQDVIFPLMCYTDADEELWQEDPYEYIRMKF 380
>sp|Q9EPL8|IPO7_MOUSE Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2
Length = 1038
Score = 206 bits (523), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 88/152 (57%), Positives = 110/152 (72%)
Query: 1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
+EI + V R VP TL ++ED+R + PWWKCKKWALHIL+R+FERYGSPG V +Y EF
Sbjct: 229 VEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEF 288
Query: 61 ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
A +LK F+ G+ VLL L QY+ Y++PRV+QQ LNY+ Q V H W LKPH
Sbjct: 289 AEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALTWKNLKPHIQG 348
Query: 121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
IIQ+V+FP + YTDADEELW DP+EYIR+KF
Sbjct: 349 IIQDVIFPLMCYTDADEELWQEDPYEYIRMKF 380
>sp|Q7TMY7|IPO8_MOUSE Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=3
Length = 1010
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 110/152 (72%)
Query: 1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
MEIFR + +R VP TL +DED+R + WWKCKKWALHI++R+FERYGSPG V +Y EF
Sbjct: 230 MEIFRTIIDRTVPPETLQIDEDDRPELVWWKCKKWALHIVARLFERYGSPGNVTKEYFEF 289
Query: 61 ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
+ ++LKT++ GI VLL L QYR YI+PRV+QQA NYL Q V H W ++KPH
Sbjct: 290 SEFFLKTYAVGIQQVLLKILDQYRQKEYIAPRVLQQAFNYLNQGVVHAVTWKQMKPHIQN 349
Query: 121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
I ++V+F + Y D DEELW DP+EYIR+KF
Sbjct: 350 ISEDVIFSVMCYKDEDEELWQEDPYEYIRMKF 381
>sp|O15397|IPO8_HUMAN Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2
Length = 1037
Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 110/152 (72%)
Query: 1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
MEIFR + +R VP TL +DED+R + WWKCKKWALHI++R+FERYGSPG V +Y EF
Sbjct: 230 MEIFRTIIDRTVPPETLHIDEDDRPELVWWKCKKWALHIVARLFERYGSPGNVTKEYFEF 289
Query: 61 ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
+ ++LKT++ GI VLL L QYR Y++PRV+QQA NYL Q V H W ++KPH
Sbjct: 290 SEFFLKTYAVGIQQVLLKILDQYRQKEYVAPRVLQQAFNYLNQGVVHSITWKQMKPHIQN 349
Query: 121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
I ++V+F + Y D DEELW DP+EYIR+KF
Sbjct: 350 ISEDVIFSVMCYKDEDEELWQEDPYEYIRMKF 381
>sp|P46970|NMD5_YEAST Nonsense-mediated mRNA decay protein 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NMD5 PE=1 SV=2
Length = 1048
Score = 96.7 bits (239), Expect = 5e-20, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 4 FRQVAERPVPEHTLTLDEDE-RADTPWWKCKKWALHILSRIFERYGSPGGVVS-DYEEFA 61
F + ++P+P+ L + + E R+ PW KCKKWAL L R+F+RY S Y+EF
Sbjct: 244 FVSIIQQPLPQEVLAISDIEVRSKNPWVKCKKWALANLYRLFQRYASTSLTRKFQYDEFK 303
Query: 62 RWYLKTFSAGILDVLLATLAQYRAGH-YISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
+ Y + F L V+ + ++ G ++S + LN++ Q V W + PH
Sbjct: 304 QMYCEEFLTQFLQVVFDQIEKWGTGQLWLSDECLYYILNFVEQCVVQKTTWKLVGPHYNV 363
Query: 121 IIQEVLFPFLSYTDADEELWSSDPHEYI 148
I+Q V+FP L T E + +DP EYI
Sbjct: 364 ILQHVIFPLLKPTAETLEAFDNDPQEYI 391
>sp|O59809|IMA3_SCHPO Probable importin c550.11 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPCC550.11 PE=3 SV=1
Length = 1029
Score = 86.3 bits (212), Expect = 7e-17, Method: Composition-based stats.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSD---- 56
+++ V ++P+PE ++L+ + R W KCKKWA + L+RIF RYG P +V D
Sbjct: 225 IQLLLAVVQKPLPESLMSLEPEVRQSHVWHKCKKWAYYSLNRIFTRYGEPSSLVGDSANK 284
Query: 57 YEEFARWYLKTFSAGILDVLLATLAQYRAGH-YISPRVMQQALNYLTQAVGHGHCWARLK 115
Y FA+ ++ IL+ + + G ++SPRV+ + + V WA LK
Sbjct: 285 YRAFAKNFITNVVPNILETYIQQTILWTQGQLWLSPRVLYFLGCFYEECVKPKSTWALLK 344
Query: 116 PHATAIIQEVLFPFLSYTDADEELWSSDPHEYI 148
PH +I +FP L ++ DEELW DP E+I
Sbjct: 345 PHLQLLIGSFVFPQLCMSEEDEELWELDPVEFI 377
>sp|Q55CX9|IPO7_DICDI Probable importin-7 homolog OS=Dictyostelium discoideum
GN=DDB_G0269860 PE=3 SV=1
Length = 1065
Score = 80.5 bits (197), Expect = 5e-15, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 83/156 (53%), Gaps = 10/156 (6%)
Query: 4 FRQVAERPV-PEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVV--SDYEEF 60
F ++ +RP+ P+ + +D R + WW K+ +L+ +F + + S +
Sbjct: 231 FVRIIQRPITPQENVKHADDCRKNQ-WWLLKRTTAKLLNLLFRKSATSVRSTDHSSVKAL 289
Query: 61 ARWYLKTFSAGILDVL---LATLAQ-YRAGHYISPRVMQQALNYLTQAVGHGHCWARLKP 116
+ ++ +S ++ V L+TL Q Y+ HY R Q+ + Y + A+ +G + +KP
Sbjct: 290 NKLFMPVYSVEVMKVFYEQLSTLEQLYKGVHY--ERYQQKLIEYFSFAIKYGVTYVAMKP 347
Query: 117 HATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
+ +IQ+VLFP + + D D ELW DP+E++R +F
Sbjct: 348 WLSTLIQQVLFPIICFNDRDAELWECDPNEFLRSQF 383
>sp|Q04175|SXM1_YEAST Importin beta SMX1 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=SXM1 PE=1 SV=1
Length = 944
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 3/147 (2%)
Query: 7 VAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLK 66
+ +P+P + LD +R+ K KW L+R +RY ++ +EF +
Sbjct: 230 LCSKPLPVEVMELDPADRSLDKRVKVNKWGFGNLNRFLQRYNKITKAIT--KEFIDYIFN 287
Query: 67 TFSAGILDVLLATLAQY-RAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEV 125
T IL + + ++S + +++L + V + ++PH I + V
Sbjct: 288 TIVPIILREFFKDIEAWGNNSLWLSDSSLYFLISFLEKCVTIDQLYPLIEPHLQIIFENV 347
Query: 126 LFPFLSYTDADEELWSSDPHEYIRVKF 152
+FP L + EL D EY R F
Sbjct: 348 IFPCLCANEQSIELLEDDQEEYTRRYF 374
>sp|C3MGW0|MUTL_RHISN DNA mismatch repair protein MutL OS=Rhizobium sp. (strain NGR234)
GN=mutL PE=3 SV=1
Length = 600
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 45/127 (35%), Gaps = 29/127 (22%)
Query: 10 RPVPEHTLTLDEDERADTPWWKCKKWALHI-----LSRIFERYGSPG------------- 51
RPVP L + E D C + H L ER+G PG
Sbjct: 455 RPVPAQALLIPEI--VDLAEDDCDRLMAHAEEFLRLGLSIERFG-PGAIAVRETPAMLGE 511
Query: 52 ----GVVSDY-EEFARWYLKTFSAGILDVLLATLA---QYRAGHYISPRVMQQALNYLTQ 103
G+V +E A W AG LD L AT+A R+G + P M L +
Sbjct: 512 MDASGLVRQLADELAEWDTANGLAGRLDYLAATMACHGSVRSGRRMRPEEMNALLRQMEA 571
Query: 104 AVGHGHC 110
G G C
Sbjct: 572 TPGSGQC 578
>sp|Q5R9J2|XPO2_PONAB Exportin-2 OS=Pongo abelii GN=CSE1L PE=2 SV=1
Length = 971
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 58 EEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPH 117
EEF R YL F I ++L+ T + + +S A+ +L H +
Sbjct: 284 EEFQR-YLPRFVTAIWNLLVTTGQEVKYDLLVS-----NAIQFLASVCERPHYKNLFEDQ 337
Query: 118 --ATAIIQEVLFPFLSYTDADEELWSSDPHEYIR 149
T+I ++V+ P + + ADEE + + EYIR
Sbjct: 338 NTLTSICEKVIVPNMEFRAADEEAFEDNSEEYIR 371
>sp|P55060|XPO2_HUMAN Exportin-2 OS=Homo sapiens GN=CSE1L PE=1 SV=3
Length = 971
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 58 EEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPH 117
EEF R YL F I ++L+ T + + +S A+ +L H +
Sbjct: 284 EEFQR-YLPRFVTAIWNLLVTTGQEVKYDLLVS-----NAIQFLASVCERPHYKNLFEDQ 337
Query: 118 --ATAIIQEVLFPFLSYTDADEELWSSDPHEYIR 149
T+I ++V+ P + + ADEE + + EYIR
Sbjct: 338 NTLTSICEKVIVPNMEFRAADEEAFEDNSEEYIR 371
>sp|A5D785|XPO2_BOVIN Exportin-2 OS=Bos taurus GN=CSE1L PE=2 SV=1
Length = 971
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 58 EEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPH 117
EEF R YL F I ++L+ T + + +S A+ +L H +
Sbjct: 284 EEFQR-YLPRFVTAIWNLLVTTGQEVKYDLLVS-----NAIQFLASVCERPHYKNLFEDQ 337
Query: 118 --ATAIIQEVLFPFLSYTDADEELWSSDPHEYIR 149
T+I ++V+ P + + ADEE + + EYIR
Sbjct: 338 NTLTSICEKVIVPNMEFRAADEEAFEDNSEEYIR 371
>sp|Q9ERK4|XPO2_MOUSE Exportin-2 OS=Mus musculus GN=Cse1l PE=2 SV=1
Length = 971
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 58 EEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPH 117
EEF R YL F I ++L+ T + + +S A+ +L H +
Sbjct: 284 EEFQR-YLPRFVTAIWNLLVTTGREVKYDLLVS-----NAIQFLASVCERPHYKNLFEDQ 337
Query: 118 --ATAIIQEVLFPFLSYTDADEELWSSDPHEYIR 149
T+I ++V+ P + + ADEE + + EYIR
Sbjct: 338 NTLTSICEKVIVPNMEFRAADEEAFEDNSEEYIR 371
>sp|Q9PTU3|XPO2_PAGMA Exportin-2 OS=Pagrus major GN=cse1l PE=2 SV=1
Length = 971
Score = 33.9 bits (76), Expect = 0.50, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 57 YEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKP 116
Y+E + YL F I ++L++T + + +S A+ +L H +
Sbjct: 282 YDEEFQPYLPRFVTAIWNLLVSTGQEVKYDLLVS-----NAIQFLASVCERPHYKHLFED 336
Query: 117 H--ATAIIQEVLFPFLSYTDADEELWSSDPHEYIR 149
T+I ++V+ P + + ADEE + + EYIR
Sbjct: 337 QNTLTSICEKVIVPNMEFRSADEEAFEDNSEEYIR 371
>sp|Q8AY73|XPO2_ORENI Exportin-2 OS=Oreochromis niloticus GN=cse1l PE=2 SV=1
Length = 971
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 57 YEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKP 116
Y+E + YL F I ++L++T + + +S A+ +L H +
Sbjct: 282 YDEEFQPYLPRFVTAIWNLLVSTGQEVKYDLLVS-----NAIQFLASVCERPHYKHLFED 336
Query: 117 H--ATAIIQEVLFPFLSYTDADEELWSSDPHEYIR 149
T+I ++V+ P + + ADEE + + EYIR
Sbjct: 337 QNTLTSICEKVIVPNMEFRSADEEAFEDNSEEYIR 371
>sp|Q8SR54|IMPO_ENCCU Probable importin ECU10_0620 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=ECU10_0620 PE=1 SV=1
Length = 939
Score = 33.5 bits (75), Expect = 0.64, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 114 LKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELG 156
++P+ + I + P S +D++E+ + +DP +Y+R K+ G
Sbjct: 311 MEPNLSYFISGYILPLYSLSDSEEDDFENDPDKYLREKYNFFG 353
>sp|Q6GMY9|XPO2_XENLA Exportin-2 OS=Xenopus laevis GN=cse1l PE=2 SV=1
Length = 971
Score = 32.7 bits (73), Expect = 0.91, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 57 YEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKP 116
Y+E + YL F I ++L+ T + + +S A+ +L H +
Sbjct: 282 YDEEFQPYLPRFVTAIWNLLVTTGQEVKYDLLVS-----NAIQFLASVCERPHYKNLFED 336
Query: 117 HAT--AIIQEVLFPFLSYTDADEELWSSDPHEYIR 149
+T +I ++V+ P + + ADEE + + EYIR
Sbjct: 337 PSTLTSICEKVIVPNMEFRAADEEAFEDNSEEYIR 371
>sp|Q9N2H0|CY24A_TURTR Cytochrome b-245 light chain OS=Tursiops truncatus GN=CYBA PE=2
SV=3
Length = 192
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 51 GGVVSDYEEFARWYLKTFS--AGILDVLLATLAQYRAGHYISPRVMQQ-ALNYLTQAV 105
GG+V+ +FA+WYL +S AG+L LL +Y G M++ YLT+AV
Sbjct: 24 GGIVATAGQFAQWYLGAYSIAAGVLICLL----EYPRGKRSKGSTMERCGQKYLTRAV 77
>sp|O13671|CSE1_SCHPO Importin-alpha re-exporter OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=kap109 PE=3 SV=2
Length = 967
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 16/63 (25%)
Query: 96 QALNYLTQAVGHGHCWARLKPHA---------TAIIQEVLFPFLSYTDADEELWSSDPHE 146
+A+ +LT + R++ HA I+ V+ P + ++DEEL+ DP E
Sbjct: 307 KAMAFLTSVI-------RIRKHAEFFQQDQVLQQFIELVVLPNICLRESDEELFEDDPLE 359
Query: 147 YIR 149
Y+R
Sbjct: 360 YVR 362
>sp|Q9XZU1|XPO2_DROME Exportin-2 OS=Drosophila melanogaster GN=Cas PE=2 SV=2
Length = 975
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 57 YEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLK- 115
Y+E + +++ F + ++L+ T + +S AL +L+ H + +
Sbjct: 285 YDEEFKPFMEQFVTAVWELLVKTSLHTKYDSLVS-----HALQFLSVVADRQHYQSIFEN 339
Query: 116 PHATA-IIQEVLFPFLSYTDADEELWSSDPHEYIR 149
P A I +V+ P L +DEE++ P EYIR
Sbjct: 340 PEILAQICDKVVIPNLDIRPSDEEIFEDSPEEYIR 374
>sp|P52650|CY24A_PIG Cytochrome b-245 light chain OS=Sus scrofa GN=CYBA PE=2 SV=2
Length = 192
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 51 GGVVSDYEEFARWYLKTFS--AGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVG 106
GG+V+ +F +WYL T+S AG+L LL R R Q+ + + +A G
Sbjct: 24 GGIVATAGQFTQWYLGTYSIAAGVLVCLLEYPRGRRTKGSTMERCEQKYMTKVVKAFG 81
>sp|Q7SZC2|XPO2_DANRE Exportin-2 OS=Danio rerio GN=cse1l PE=2 SV=1
Length = 971
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 57 YEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKP 116
Y+E + YL F I ++L+ T + + +S A+ +L H +
Sbjct: 282 YDEEFQPYLPRFVTAIWNLLVTTGQEVKYDLLVS-----NAIQFLASVCERPHYKHLFED 336
Query: 117 H--ATAIIQEVLFPFLSYTDADEELWSSDPHEYI 148
T+I ++V+ P + + ADEE + + EYI
Sbjct: 337 QNVLTSICEKVIVPNMEFRSADEEAFEDNSEEYI 370
>sp|P27050|CHID_BACCI Chitinase D OS=Bacillus circulans GN=chiD PE=1 SV=4
Length = 524
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 82 QYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKP 116
Q G Y +P +Q+ALNYL + V +G + +P
Sbjct: 445 QAAGGGYTAPAELQKALNYLIKGVSYGGSYTLRQP 479
>sp|P20615|HXB9_MOUSE Homeobox protein Hox-B9 OS=Mus musculus GN=Hoxb9 PE=2 SV=3
Length = 250
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 78 ATLAQYRAGHYISPRVMQQA-------LNYLTQAVGHGHCWARLKPHATAIIQEVLFPFL 130
A A++ +G Y +PR A ++ +A G WA L PHA+ + V P+L
Sbjct: 23 APPAKFPSGQYANPRQPGHAEHLDFPSCSFQPKAPVFGASWAPLSPHASGSLPSVYHPYL 82
>sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1
Length = 1599
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 44 FERYGSPGGVVSDYEEFARWYLKTF 68
+E+ G+PG +V DYE+ ++++ TF
Sbjct: 250 YEQEGAPGHIVRDYEQLLQFHVATF 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,129,418
Number of Sequences: 539616
Number of extensions: 2574565
Number of successful extensions: 4981
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4961
Number of HSP's gapped (non-prelim): 26
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)