Query psy3383
Match_columns 161
No_of_seqs 121 out of 369
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 23:37:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1991|consensus 100.0 1.6E-52 3.5E-57 379.4 14.2 158 1-158 228-385 (1010)
2 COG5656 SXM1 Importin, protein 100.0 3.7E-40 8E-45 292.9 12.3 154 2-157 228-382 (970)
3 PF08506 Cse1: Cse1; InterPro 100.0 2.7E-34 5.8E-39 244.6 8.7 138 1-157 84-224 (370)
4 KOG1992|consensus 99.9 2E-23 4.4E-28 187.9 11.7 138 1-158 236-376 (960)
5 COG5657 CSE1 CAS/CSE protein i 99.3 7.3E-12 1.6E-16 114.8 7.9 139 1-158 230-374 (947)
6 PF08167 RIX1: rRNA processing 93.4 0.69 1.5E-05 35.2 8.3 73 31-121 83-156 (165)
7 KOG2274|consensus 88.2 1.1 2.4E-05 42.8 5.6 90 64-154 264-375 (1005)
8 KOG1993|consensus 83.0 0.68 1.5E-05 43.7 1.6 39 115-153 368-406 (978)
9 PF07571 DUF1546: Protein of u 77.1 10 0.00022 26.0 5.7 57 29-103 19-75 (92)
10 cd06224 REM Guanine nucleotide 73.5 27 0.00059 24.1 10.2 71 37-108 35-106 (122)
11 KOG2023|consensus 70.4 19 0.00041 33.9 7.1 70 66-142 251-320 (885)
12 PF08146 BP28CT: BP28CT (NUC21 61.1 40 0.00087 25.3 6.4 44 65-108 102-149 (153)
13 PF03810 IBN_N: Importin-beta 59.8 39 0.00085 21.3 5.5 54 70-129 13-74 (77)
14 cd05136 RasGAP_DAB2IP The DAB2 58.0 32 0.00069 29.0 5.9 37 87-123 69-105 (309)
15 PF08767 CRM1_C: CRM1 C termin 54.3 64 0.0014 27.1 7.2 72 64-142 64-135 (319)
16 PF08767 CRM1_C: CRM1 C termin 52.2 60 0.0013 27.2 6.7 92 34-132 183-283 (319)
17 PF04659 Arch_fla_DE: Archaeal 49.8 88 0.0019 22.0 6.5 46 77-122 38-90 (99)
18 PF12074 DUF3554: Domain of un 42.7 63 0.0014 27.0 5.4 39 29-84 219-257 (339)
19 PF10521 DUF2454: Protein of u 42.4 66 0.0014 26.4 5.3 62 66-131 114-176 (282)
20 PF05278 PEARLI-4: Arabidopsis 40.8 1.7E+02 0.0036 24.4 7.3 83 31-123 93-180 (269)
21 cd05394 RasGAP_RASA2 RASA2 (or 40.0 97 0.0021 26.3 6.0 72 33-123 34-108 (313)
22 PF12231 Rif1_N: Rap1-interact 38.0 2.6E+02 0.0056 23.9 9.1 83 35-126 12-96 (372)
23 PF12963 DUF3852: Protein of u 37.9 17 0.00037 26.0 1.0 24 108-131 36-59 (111)
24 PF02375 JmjN: jmjN domain; I 33.4 22 0.00048 20.1 0.8 12 138-150 8-19 (34)
25 PF00888 Cullin: Cullin family 32.3 2.7E+02 0.006 24.7 8.1 112 27-151 72-185 (588)
26 PF14500 MMS19_N: Dos2-interac 31.6 2.6E+02 0.0056 22.8 7.2 70 31-123 97-166 (262)
27 KOG2059|consensus 30.1 1.4E+02 0.0031 28.3 5.8 75 31-124 315-392 (800)
28 PF09905 DUF2132: Uncharacteri 29.7 1.6E+02 0.0035 19.1 4.5 27 77-103 24-51 (64)
29 cd05134 RasGAP_RASA3 RASA3 (or 29.7 1.9E+02 0.0041 24.5 6.2 73 32-123 33-108 (310)
30 PF13184 KH_5: NusA-like KH do 28.6 38 0.00083 22.0 1.5 21 136-156 43-63 (69)
31 PF03542 Tuberin: Tuberin; In 28.4 2.1E+02 0.0045 24.7 6.3 41 90-131 287-329 (356)
32 PF01602 Adaptin_N: Adaptin N 27.8 2.7E+02 0.0058 24.2 7.1 23 27-49 125-147 (526)
33 PF10155 DUF2363: Uncharacteri 27.6 1.9E+02 0.0042 21.0 5.2 57 36-108 37-93 (126)
34 PF12348 CLASP_N: CLASP N term 27.2 2.9E+02 0.0062 21.1 8.1 24 24-47 15-38 (228)
35 smart00545 JmjN Small domain f 26.9 37 0.00081 20.0 1.1 12 142-153 13-24 (42)
36 KOG0211|consensus 26.9 2.2E+02 0.0048 27.2 6.6 37 86-122 569-605 (759)
37 COG3350 Uncharacterized conser 26.1 25 0.00055 22.0 0.2 19 133-151 32-50 (53)
38 PF08389 Xpo1: Exportin 1-like 25.9 2.3E+02 0.0051 19.7 7.6 78 35-115 44-124 (148)
39 KOG4202|consensus 25.8 35 0.00076 27.0 1.0 20 137-156 96-115 (227)
40 cd05395 RasGAP_RASA4 Ras GTPas 25.5 2.7E+02 0.0059 23.8 6.4 38 86-123 74-111 (337)
41 PF12348 CLASP_N: CLASP N term 25.3 2.7E+02 0.0059 21.3 6.1 23 27-49 64-86 (228)
42 PF09418 DUF2009: Protein of u 25.1 8.2 0.00018 34.3 -2.8 76 67-157 310-396 (458)
43 COG3351 FlaD Putative archaeal 25.0 2.7E+02 0.0058 22.3 5.8 29 77-105 128-156 (214)
44 KOG1248|consensus 24.5 1.9E+02 0.0042 29.0 5.8 53 70-125 822-874 (1176)
45 KOG0419|consensus 23.9 37 0.0008 25.4 0.8 23 133-155 123-145 (152)
46 cd01040 globin Globins are hem 23.3 2.6E+02 0.0055 19.2 7.6 73 66-141 58-130 (140)
47 PF09551 Spore_II_R: Stage II 23.1 24 0.00052 26.1 -0.3 46 31-84 24-69 (130)
48 TIGR01337 apcB allophycocyanin 22.8 2.4E+02 0.0053 21.5 5.2 52 75-126 3-55 (167)
49 KOG2549|consensus 22.4 4.3E+02 0.0093 24.4 7.3 76 29-123 311-386 (576)
50 PF11841 DUF3361: Domain of un 22.0 3.7E+02 0.0079 20.6 6.1 59 67-125 2-67 (160)
51 COG1498 SIK1 Protein implicate 21.5 3.5E+02 0.0077 23.8 6.4 45 86-131 201-245 (395)
52 KOG4508|consensus 21.2 2.8E+02 0.0061 24.7 5.7 22 87-108 454-475 (522)
53 PF04945 YHS: YHS domain; Int 21.1 23 0.0005 20.9 -0.7 18 133-150 29-46 (47)
54 PF08064 UME: UME (NUC010) dom 20.9 3E+02 0.0065 19.1 6.9 75 31-129 30-104 (107)
55 PF01603 B56: Protein phosphat 20.8 5.6E+02 0.012 22.2 10.8 124 6-133 77-229 (409)
56 CHL00171 cpcB phycocyanin beta 20.5 3E+02 0.0066 21.2 5.3 51 76-126 5-56 (172)
57 PF03378 CAS_CSE1: CAS/CSE pro 20.3 2E+02 0.0044 25.3 4.8 61 65-130 236-303 (435)
58 PF08506 Cse1: Cse1; InterPro 20.1 4.8E+02 0.01 22.4 7.0 39 43-82 1-39 (370)
No 1
>KOG1991|consensus
Probab=100.00 E-value=1.6e-52 Score=379.41 Aligned_cols=158 Identities=53% Similarity=1.023 Sum_probs=155.7
Q ss_pred ChHHHHhhcCCCCCCCCCCChhhhccchhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHH
Q psy3383 1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATL 80 (161)
Q Consensus 1 m~~f~~ii~~~~P~~~~~~d~~~r~~~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll 80 (161)
|++|++|+++|+|.|+++.|+|+|..+|||||||||+|||||+|+|||+|+++.++|++||++|..+|++.|+++++++|
T Consensus 228 ~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l 307 (1010)
T KOG1991|consen 228 MELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKIL 307 (1010)
T ss_pred HHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHHHHHhHhccCcCCcchhccccCChHHHHHHhccCcCCc
Q psy3383 81 AQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGPA 158 (161)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~~~d~ 158 (161)
++|+++.|++||+++++++||++||+++.+|++++||++.|++++|||.||++|+|+|+||+||+||||+++|++||.
T Consensus 308 ~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~ 385 (1010)
T KOG1991|consen 308 EQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDG 385 (1010)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999983
No 2
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-40 Score=292.91 Aligned_cols=154 Identities=28% Similarity=0.538 Sum_probs=147.9
Q ss_pred hHHHHhhcCCCCCCCCCCChhhhccchhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHH
Q psy3383 2 EIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLA 81 (161)
Q Consensus 2 ~~f~~ii~~~~P~~~~~~d~~~r~~~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~ 81 (161)
+++++|+++|+|.|++..|++.|..++|.||||||+.++||+|+|||.++. .+.|..|+..|++ +.|.|+++++++++
T Consensus 228 ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~-~~~y~~f~~~f~t-~vp~il~tffkqie 305 (970)
T COG5656 228 QLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSY-KKSYLSFYITFMT-RVPMILATFFKQIE 305 (970)
T ss_pred HHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999998544 4589999999998 99999999999999
Q ss_pred HhhcC-cccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHHHHHhHhccCcCCcchhccccCChHHHHHHhccCcCC
Q psy3383 82 QYRAG-HYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGP 157 (161)
Q Consensus 82 ~~~~~-~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~~~d 157 (161)
.|++| .|++|+++|++..|+..||..+.+|++++||++-|++++|||.+|+|++++|+||+||+|||||++|++++
T Consensus 306 ~wgqgqLWlsd~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~ 382 (970)
T COG5656 306 EWGQGQLWLSDIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDN 382 (970)
T ss_pred HhhcCCeecchHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcC
Confidence 99985 79999999999999999999999999999999999999999999999999999999999999999999987
No 3
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=2.7e-34 Score=244.60 Aligned_cols=138 Identities=28% Similarity=0.471 Sum_probs=111.2
Q ss_pred ChHHHHhhcCCCCCCCCCCChhhhccchhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHH
Q psy3383 1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATL 80 (161)
Q Consensus 1 m~~f~~ii~~~~P~~~~~~d~~~r~~~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll 80 (161)
|+.|+++|++++|... ++|+.+..++||+|+|+++|++++.+||++ +| ++|+|.|++.+|++|
T Consensus 84 m~~f~~~L~~~~p~l~---~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e---------~f-----~~~l~~fv~~vw~lL 146 (370)
T PF08506_consen 84 MEIFHKYLTYPNPALE---EDDDDEPGLLEKVKAWICENLNLYAEKYEE---------EF-----EPFLPTFVQAVWNLL 146 (370)
T ss_dssp HHHHHHHHH--SGGG----TT-SSS--HHHHHHHHHHHHHHHHHHH-HH---------HH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccC---CCCcccccHHHHHHHHHHHHHHHHHHHHHH---------HH-----HHHHHHHHHHHHHHH
Confidence 7899999999998533 333446778999999999999999999976 56 799999999999999
Q ss_pred HHhhcCcccCHHHHHHHHHHHHHhhcCchhhh-cc--hhHHHHHHHHhHhccCcCCcchhccccCChHHHHHHhccCcCC
Q psy3383 81 AQYRAGHYISPRVMQQALNYLTQAVGHGHCWA-RL--KPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGP 157 (161)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~-~l--kp~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~~~d 157 (161)
.+++. ....|.+++.+++||+.+++. .+|+ ++ +||+++||++||||+||+|++|+|+|||||+|||||++|++|-
T Consensus 147 ~~~~~-~~~~D~lv~~al~FL~~v~~~-~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~ 224 (370)
T PF08506_consen 147 TKISQ-QPKYDILVSKALQFLSSVAES-PHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDS 224 (370)
T ss_dssp TC--S-SGGGHHHHHHHHHHHHHHHTS-HHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS--
T ss_pred HHhhh-cccccHHHHHHHHHHHHHHcc-hhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhcccccc
Confidence 99876 556799999999999987764 4565 65 7999999999999999999999999999999999999999754
No 4
>KOG1992|consensus
Probab=99.90 E-value=2e-23 Score=187.92 Aligned_cols=138 Identities=24% Similarity=0.314 Sum_probs=123.6
Q ss_pred ChHHHHhhcCCCCCCCCCCChhhhccchhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHH
Q psy3383 1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATL 80 (161)
Q Consensus 1 m~~f~~ii~~~~P~~~~~~d~~~r~~~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll 80 (161)
|+.|++++++++| .++. |+.+....-|+|.-+|.|++.|.+||.+ +| ++|+|.|++++|++|
T Consensus 236 M~~F~k~l~~~~p--~le~--~~ee~~~l~~lka~ICEi~~LY~~kYeE---------ef-----~~fl~~fv~~~W~LL 297 (960)
T KOG1992|consen 236 MGAFHKLLTYDNP--LLES--DEEEATVLDKLKAQICEIFNLYATKYEE---------EF-----QPFLPDFVTATWNLL 297 (960)
T ss_pred HHHHHHHHhccCc--cccc--CcccccHHHHHHHHHHHHHHHHHHhhHH---------HH-----HhhHHHHHHHHHHHH
Confidence 7899999999999 5554 4457889999999999999999999988 78 899999999999999
Q ss_pred HHhhcCcccCHHHHHHHHHHHHHhhcCchhhh-cc--hhHHHHHHHHhHhccCcCCcchhccccCChHHHHHHhccCcCC
Q psy3383 81 AQYRAGHYISPRVMQQALNYLTQAVGHGHCWA-RL--KPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGP 157 (161)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~-~l--kp~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~~~d 157 (161)
...++ ...+|.++++|++||+.+++ ...|. ++ ...+.+|++.||+||++++++|+|+|||||.|||||+++|+|-
T Consensus 298 ~~~s~-~~kyD~Lvs~Al~FLt~V~~-r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDv 375 (960)
T KOG1992|consen 298 VSTSP-DTKYDYLVSKALQFLTSVSR-RPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDV 375 (960)
T ss_pred HhcCC-CccHHHHHHHHHHHHHHHHh-hhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCc
Confidence 99876 66799999999999998765 55665 55 6779999999999999999999999999999999999999985
Q ss_pred c
Q psy3383 158 A 158 (161)
Q Consensus 158 ~ 158 (161)
.
T Consensus 376 d 376 (960)
T KOG1992|consen 376 D 376 (960)
T ss_pred c
Confidence 4
No 5
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.29 E-value=7.3e-12 Score=114.78 Aligned_cols=139 Identities=20% Similarity=0.278 Sum_probs=114.1
Q ss_pred ChHHHHhhcCCCCCCCCCCChhhhccchhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHH
Q psy3383 1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATL 80 (161)
Q Consensus 1 m~~f~~ii~~~~P~~~~~~d~~~r~~~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll 80 (161)
|+.|...+.+-.| .+..| .-+.....|+|.-++.+++.|-+||-+ -| +.+.-.|++.+|.++
T Consensus 230 m~~F~klls~~~~--~lq~~--~le~~~~~~l~~~i~e~f~ly~t~yp~---------~i-----t~li~dfv~~vw~~l 291 (947)
T COG5657 230 MEHFCKLLSYSNP--VLQKD--CLEDCVYFKLKGSICEIFNLYTTKYPE---------VI-----TYLIYDFVEIVWNLL 291 (947)
T ss_pred HHHHHHHHhhcch--hhhhh--hcccceeeeecccHHHHHHHHhhccHH---------Hh-----hHHHHHHHHHHHHHH
Confidence 6788888888776 43332 223367889999999999999999976 23 557779999999999
Q ss_pred HHhhcCcccCHHHHHHHHHHHHHhhc--Cchhhhcchh----HHHHHHHHhHhccCcCCcchhccccCChHHHHHHhccC
Q psy3383 81 AQYRAGHYISPRVMQQALNYLTQAVG--HGHCWARLKP----HATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGE 154 (161)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~fL~~~v~--~~~~~~~lkp----~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~ 154 (161)
++... .++.|.++..++.++...++ .+.+...+-. -+.++++.++.|+++++++|+|+|+|||.||||.+...
T Consensus 292 ttit~-~~~~d~Lv~k~l~~l~~v~k~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~ 370 (947)
T COG5657 292 TTITR-PYIRDYLVSKSLTVLINVIKYPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKT 370 (947)
T ss_pred HhhcC-ccccchhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccc
Confidence 99865 77899999999999999998 7778876644 68999999999999999999999999999999966655
Q ss_pred cCCc
Q psy3383 155 LGPA 158 (161)
Q Consensus 155 ~~d~ 158 (161)
.=+.
T Consensus 371 dye~ 374 (947)
T COG5657 371 DYEV 374 (947)
T ss_pred cchh
Confidence 3333
No 6
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.41 E-value=0.69 Score=35.16 Aligned_cols=73 Identities=21% Similarity=0.261 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhc-Cch
Q psy3383 31 KCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVG-HGH 109 (161)
Q Consensus 31 K~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~-~~~ 109 (161)
.+++-|+..+.++|.+=+. +.++.+-+..+.+|.|++..+++++. ..+...++..|..++. ++.
T Consensus 83 ~~~~~ai~~L~~l~~~~~~-------~p~l~Rei~tp~l~~~i~~ll~l~~~--------~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 83 SVLEAAIITLTRLFDLIRG-------KPTLTREIATPNLPKFIQSLLQLLQD--------SSCPETALDALATLLPHHPT 147 (165)
T ss_pred HHHHHHHHHHHHHHHHhcC-------CCchHHHHhhccHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHHHCCc
Confidence 6788999999999988554 34777778899999999999999885 3466677888888875 333
Q ss_pred hhhcchhHHHHH
Q psy3383 110 CWARLKPHATAI 121 (161)
Q Consensus 110 ~~~~lkp~l~~l 121 (161)
.++||...|
T Consensus 148 ---t~rp~~~ki 156 (165)
T PF08167_consen 148 ---TFRPFANKI 156 (165)
T ss_pred ---cccchHHHH
Confidence 445554443
No 7
>KOG2274|consensus
Probab=88.17 E-value=1.1 Score=42.77 Aligned_cols=90 Identities=18% Similarity=0.376 Sum_probs=66.9
Q ss_pred HHhhhhHHHHHHHHHHHHHhhc--------C--------------cccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHH
Q psy3383 64 YLKTFSAGILDVLLATLAQYRA--------G--------------HYISPRVMQQALNYLTQAVGHGHCWARLKPHATAI 121 (161)
Q Consensus 64 f~~~~~~~~l~~~l~ll~~~~~--------~--------------~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~l 121 (161)
.+..|+..++..+|+++++.-. + ...-..++-+++.|++..++....-+.++..+..+
T Consensus 264 ~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~l 343 (1005)
T KOG2274|consen 264 LINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPEL 343 (1005)
T ss_pred hhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3456777777888886643210 0 11123566789999999988777777777788888
Q ss_pred HHHhHhccCcCCcchhccccCChHHHHHHhccC
Q psy3383 122 IQEVLFPFLSYTDADEELWSSDPHEYIRVKFGE 154 (161)
Q Consensus 122 i~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~ 154 (161)
+...+. .+.++++..|.|.+||.+||-...|+
T Consensus 344 I~~~v~-y~Qlseeqie~w~sD~~~fV~dEd~~ 375 (1005)
T KOG2274|consen 344 IYQLVA-YLQLSEEQIEVWTSDVNQFVADEDDG 375 (1005)
T ss_pred HHHHHH-HHHhhHHHHHHHhccHHHhhccCCCC
Confidence 887776 57899999999999999999988777
No 8
>KOG1993|consensus
Probab=82.97 E-value=0.68 Score=43.68 Aligned_cols=39 Identities=18% Similarity=0.418 Sum_probs=33.4
Q ss_pred hhHHHHHHHHhHhccCcCCcchhccccCChHHHHHHhcc
Q psy3383 115 KPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFG 153 (161)
Q Consensus 115 kp~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d 153 (161)
.+-+..||...|==.+.++++|.|.|.+||++|+..+--
T Consensus 368 ~~rIt~lcd~Lvt~YflLt~~eLEeW~~dPE~~~~Eq~~ 406 (978)
T KOG1993|consen 368 DNRITNLCDLLVTHYFLLTEEELEEWTQDPEGWVLEQSG 406 (978)
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHhcChHHhhhhccc
Confidence 455778888888888999999999999999999987653
No 9
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=77.06 E-value=10 Score=26.01 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHH
Q psy3383 29 WWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQ 103 (161)
Q Consensus 29 ~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~ 103 (161)
-|.++.-|..++..+..|||+.. .+.-|.+++++.+.+..-.. +-...+=|+.=|..
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~--------------~~L~~Ri~~tl~k~l~d~~~----~~~t~YGAi~gL~~ 75 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSY--------------PTLQPRITRTLLKALLDPKK----PLGTHYGAIVGLSA 75 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc--------------chHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHH
Confidence 78999999999999999999732 45566777777776654221 44566666666554
No 10
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=73.45 E-value=27 Score=24.15 Aligned_cols=71 Identities=18% Similarity=0.345 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcc-cCHHHHHHHHHHHHHhhcCc
Q psy3383 37 LHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHY-ISPRVMQQALNYLTQAVGHG 108 (161)
Q Consensus 37 ~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~-~~~~~~~~~l~fL~~~v~~~ 108 (161)
...+.+|..||..+.....++..+......+--..+++.+..+++.+.. .+ -...++..+.+|+..+...+
T Consensus 35 ~~ll~~L~~rf~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~Wv~~~~~-df~~d~~l~~~l~~F~~~~~~~~ 106 (122)
T cd06224 35 TELLEKLIERYEIAPPENLEYNDWDKKKSKPIRLRVLNVLRTWVENYPY-DFFDDEELLELLEEFLNRLVQEG 106 (122)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccccHHHHHHHHHHHHHHcccH
Confidence 4689999999997654332223332222222233334444444444332 22 35578888999998886544
No 11
>KOG2023|consensus
Probab=70.45 E-value=19 Score=33.93 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=53.7
Q ss_pred hhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHHHHHhHhccCcCCcchhccccC
Q psy3383 66 KTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSS 142 (161)
Q Consensus 66 ~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li~~vifP~l~~~~~D~Elfed 142 (161)
.++++.+++-+++..+.. ...+.--|.+|......++-.-..++||+..|+- +.+-.|.++|.|+-+-++
T Consensus 251 ~phl~~IveyML~~tqd~------dE~VALEACEFwla~aeqpi~~~~L~p~l~kliP-vLl~~M~Ysd~D~~LL~~ 320 (885)
T KOG2023|consen 251 VPHLDNIVEYMLQRTQDV------DENVALEACEFWLALAEQPICKEVLQPYLDKLIP-VLLSGMVYSDDDIILLKN 320 (885)
T ss_pred ccchHHHHHHHHHHccCc------chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH-HHHccCccccccHHHhcC
Confidence 345666666666544432 3357777899988877777677789999999996 889999999999988883
No 12
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=61.13 E-value=40 Score=25.26 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=31.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhcCcccC----HHHHHHHHHHHHHhhcCc
Q psy3383 65 LKTFSAGILDVLLATLAQYRAGHYIS----PRVMQQALNYLTQAVGHG 108 (161)
Q Consensus 65 ~~~~~~~~l~~~l~ll~~~~~~~~~~----~~~~~~~l~fL~~~v~~~ 108 (161)
..+|+..+++...++|.....+.--+ ..+....+.-|..|..+.
T Consensus 102 f~~Y~~~ll~~~~~~L~~~~~~~~~~~~~~~~L~~~vL~~L~~~F~~D 149 (153)
T PF08146_consen 102 FTPYFSYLLDNAVDLLKQFNSSKTESKSKSWELWRLVLSTLQKCFLHD 149 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhc
Confidence 36889999999999998875432223 567777888888876554
No 13
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=59.82 E-value=39 Score=21.31 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCchhhh--------cchhHHHHHHHHhHhcc
Q psy3383 70 AGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWA--------RLKPHATAIIQEVLFPF 129 (161)
Q Consensus 70 ~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~--------~lkp~l~~li~~vifP~ 129 (161)
|+|....+.++..... +..+-..|..+|.+.|.. .|. .+.+.-...|.+.++..
T Consensus 13 p~~~~~l~~il~~~~~----~~~~R~~A~i~LKn~I~~--~W~~~~~~~~~~~~~~~k~~Ik~~ll~~ 74 (77)
T PF03810_consen 13 PGFWQYLLQILSSNSQ----DPEVRQLAAILLKNLIKK--NWSPSKQKGWSQLPEEEKEQIKSQLLQL 74 (77)
T ss_dssp TCHHHHHHHHHHCTTS----CHHHHHHHHHHHHHHHHH--SGGHHHHHHHHGSSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHccCC----CHHHHHHHHHHHHHHHHH--cCchhhccCCCCCCHHHHHHHHHHHHHH
Confidence 8899999999876432 567788899999999854 577 67666666666655543
No 14
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=58.01 E-value=32 Score=28.99 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=21.8
Q ss_pred cccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHHHH
Q psy3383 87 HYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQ 123 (161)
Q Consensus 87 ~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li~ 123 (161)
.+-++.++..++......++++...+.++|.++.|+.
T Consensus 69 lfRgNsl~tK~~~~y~k~~G~~YL~~~L~p~I~~ii~ 105 (309)
T cd05136 69 IFRENTLATKAIEEYLKLVGQDYLQDTLGEFIRALYE 105 (309)
T ss_pred HHhcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Confidence 4555567777777666655443333456666666653
No 15
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=54.28 E-value=64 Score=27.07 Aligned_cols=72 Identities=17% Similarity=0.264 Sum_probs=42.0
Q ss_pred HHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHHHHHhHhccCcCCcchhccccC
Q psy3383 64 YLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSS 142 (161)
Q Consensus 64 f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li~~vifP~l~~~~~D~Elfed 142 (161)
..++++|+++++++.-=..... ....+.+++ .++.+++. .=..+.|.+..|++.+.-|.+.+=.+|.+.|-+
T Consensus 64 v~~~~i~~l~~~vL~DY~~~~p-~~r~~evL~----l~~~ii~k--l~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe 135 (319)
T PF08767_consen 64 VANNFIPPLLDAVLGDYQNSVP-DAREPEVLS----LMATIINK--LGELIQPQVPQILEAVFECTLPMINKDFEEYPE 135 (319)
T ss_dssp HHHHTHHHHHHHHHHHHHHS-G-GGS-HHHHH----HHHHHHHH--HGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCc-cccChhHHH----HHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChH
Confidence 4567888888887765444222 333445554 33443321 223567788888888877777766666555533
No 16
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=52.21 E-value=60 Score=27.25 Aligned_cols=92 Identities=15% Similarity=0.264 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhc--CcccCHHHHHHHHHHHHHhhcCchhh
Q psy3383 34 KWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRA--GHYISPRVMQQALNYLTQAVGHGHCW 111 (161)
Q Consensus 34 Kwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~--~~~~~~~~~~~~l~fL~~~v~~~~~~ 111 (161)
.-++.++.-+++.... ...+++..|.++|.-.+++.++.++..... |.-..-.+++.++.......-....+
T Consensus 183 ~~~L~~l~~ll~~~~~------~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~ 256 (319)
T PF08767_consen 183 ETGLNILLELLNNVSK------TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLF 256 (319)
T ss_dssp HHHHHHHHHHHHHHHH-------SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSS
T ss_pred HHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 4556667777766554 234899999999999999999999866432 32222356666666655422233333
Q ss_pred h-------cchhHHHHHHHHhHhccCcC
Q psy3383 112 A-------RLKPHATAIIQEVLFPFLSY 132 (161)
Q Consensus 112 ~-------~lkp~l~~li~~vifP~l~~ 132 (161)
. .+..++.+++. -.||++.-
T Consensus 257 ~~~~~n~~~v~~~i~~~L~-~~Fp~l~~ 283 (319)
T PF08767_consen 257 DPGMSNQEFVSEYIANLLS-EAFPNLSP 283 (319)
T ss_dssp STTT-HHHHHHHHHHHHHH-HH-TTS-H
T ss_pred CCCCccHHHHHHHHHHHHH-HhCCCCCH
Confidence 3 34566666664 35788754
No 17
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=49.84 E-value=88 Score=21.96 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=33.6
Q ss_pred HHHHHHhhcCcccCHHHHHHHHHHHHHhhcC------chhhhc-chhHHHHHH
Q psy3383 77 LATLAQYRAGHYISPRVMQQALNYLTQAVGH------GHCWAR-LKPHATAII 122 (161)
Q Consensus 77 l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~------~~~~~~-lkp~l~~li 122 (161)
...|..+.+=.|+|+.+..++++|+...--. +..+++ +..|+..|+
T Consensus 38 ~~~L~YY~~igWISe~V~~~L~~~~~G~~~~~~~~~~~~~~~Lt~~DH~~SL~ 90 (99)
T PF04659_consen 38 ADALDYYESIGWISEEVREQLLKYLKGFKYDHDDFEWKPSWKLTIDDHIKSLL 90 (99)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHhCCCCCccccccCCCCCCCHHHHHHHHH
Confidence 3467777665899999999999999875322 456664 578876665
No 18
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=42.70 E-value=63 Score=26.95 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q psy3383 29 WWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYR 84 (161)
Q Consensus 29 ~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~ 84 (161)
-|++++-|...+.+++.+.+. .+...++..+|+.+....
T Consensus 219 ~~~vR~~A~~~l~~l~~~~~~-----------------~l~~~li~~l~~~l~~~~ 257 (339)
T PF12074_consen 219 SWKVRRAALSALKKLYASNPE-----------------LLSKSLISGLWKWLSSSE 257 (339)
T ss_pred CHHHHHHHHHHHHHHHHhChH-----------------HHHHHHHHHHHHHHHhcc
Confidence 455566666666666655432 267778888888886543
No 19
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=42.40 E-value=66 Score=26.37 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=37.6
Q ss_pred hhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCchhhhcc-hhHHHHHHHHhHhccCc
Q psy3383 66 KTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARL-KPHATAIIQEVLFPFLS 131 (161)
Q Consensus 66 ~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~~l-kp~l~~li~~vifP~l~ 131 (161)
+++.|-++-..|.+++.+.. .++- +-+..+-.++..+ . ...|..+ +-.+..++++.++|.+.
T Consensus 114 ~~~~~liiP~iL~llDD~~~-~~K~-~G~~lL~~ll~~~-~-~~~~~~L~~tGl~~v~~~al~~~L~ 176 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSP-EIKI-QGCQLLHHLLEKV-P-AAEWDILRRTGLFSVFEDALFPCLY 176 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCH-HHHH-HHHHHHHHHHHhC-C-hhhhHHHHHcChHHHHHHHHHHHhh
Confidence 56777788888889988743 1111 2233334444443 2 2226655 45578888888888777
No 20
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.84 E-value=1.7e+02 Score=24.42 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhc--CcccCHHHHHHHHHHHHHh--h
Q psy3383 31 KCKKWALHILSRIFERYGS-PGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRA--GHYISPRVMQQALNYLTQA--V 105 (161)
Q Consensus 31 K~KKwa~~il~rl~~Ryg~-~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~--~~~~~~~~~~~~l~fL~~~--v 105 (161)
++|--...++..+|.+||+ ..++.-....| =..++++++.+++.... -.-++..-+..++..|... +
T Consensus 93 ~Vk~S~~silq~If~KHGDIAsNc~lkS~~~--------RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa 164 (269)
T PF05278_consen 93 QVKPSQVSILQKIFEKHGDIASNCKLKSQQF--------RSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESA 164 (269)
T ss_pred EEcHhHHHHHHHHHHhCccHhhccccCcHHH--------HHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHc
Confidence 6788899999999999997 33332222233 23345555555555432 1345555555555554443 3
Q ss_pred cCchhhhcchhHHHHHHH
Q psy3383 106 GHGHCWARLKPHATAIIQ 123 (161)
Q Consensus 106 ~~~~~~~~lkp~l~~li~ 123 (161)
+.+..| |+.-+.+|++
T Consensus 165 ~vkV~W--LR~~L~Ei~E 180 (269)
T PF05278_consen 165 KVKVDW--LRSKLEEILE 180 (269)
T ss_pred CcchHH--HHHHHHHHHH
Confidence 555566 3334444443
No 21
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=40.03 E-value=97 Score=26.32 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHH-HHHhh--cCcccCHHHHHHHHHHHHHhhcCch
Q psy3383 33 KKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLAT-LAQYR--AGHYISPRVMQQALNYLTQAVGHGH 109 (161)
Q Consensus 33 KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~l-l~~~~--~~~~~~~~~~~~~l~fL~~~v~~~~ 109 (161)
|-=+...|.|+|.-+|. +-+|+....+. ++... +..+-++.++.+++......+.++.
T Consensus 34 ~~~~a~~Lvrlf~~~~~-------------------~~~fl~~li~~Ev~~t~~~~tLFRgNSlaTK~m~~y~k~~G~~Y 94 (313)
T cd05394 34 KYDAVLPLVRLLLHHQK-------------------LVPFVAAVAELDLKDTQEANTIFRGNSLATRCLDEMMKIVGKHY 94 (313)
T ss_pred HHHHHHHHHHHHHhcCc-------------------HHHHHHHHHHHHHHhcCCHhhHhhcCcHHHHHHHHHHHHHHHHH
Confidence 44566777788877765 23445444442 33322 2467778889998888887776665
Q ss_pred hhhcchhHHHHHHH
Q psy3383 110 CWARLKPHATAIIQ 123 (161)
Q Consensus 110 ~~~~lkp~l~~li~ 123 (161)
..+.|+|.++.|++
T Consensus 95 L~~tL~pvI~~i~~ 108 (313)
T cd05394 95 LKVTLKPVLDEICD 108 (313)
T ss_pred HHHHHHHHHHHHHc
Confidence 55677777777774
No 22
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=37.95 E-value=2.6e+02 Score=23.90 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhh-cCcccCHHHHHHHHHHHHHhhcCchhhhc
Q psy3383 35 WALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYR-AGHYISPRVMQQALNYLTQAVGHGHCWAR 113 (161)
Q Consensus 35 wa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~-~~~~~~~~~~~~~l~fL~~~v~~~~~~~~ 113 (161)
=|+.-+++.+.-|.+... -.+. +..++-+++..-.=+.... .|.....+++.+|+++|..++.+...=+.
T Consensus 12 daY~~l~~~l~~~~~~~~----~~~l-----~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 12 DAYMTLNNALKAYDNLPD----RQAL-----QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred HHHHHHHHHHHHhcCCCc----HHHH-----HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 367778888888765211 1222 3344444444444343322 35666789999999999999987766665
Q ss_pred chhH-HHHHHHHhH
Q psy3383 114 LKPH-ATAIIQEVL 126 (161)
Q Consensus 114 lkp~-l~~li~~vi 126 (161)
+... ...++.+.|
T Consensus 83 l~~d~~~~~i~~~i 96 (372)
T PF12231_consen 83 LSDDFASFIIDHSI 96 (372)
T ss_pred CChHHHHHHHHHHH
Confidence 5333 333554443
No 23
>PF12963 DUF3852: Protein of unknown function (DUF3852); InterPro: IPR024330 This entry represents a family of uncharacterised bacterial proteins found by clustering human gut metagenomic sequences [].
Probab=37.88 E-value=17 Score=25.96 Aligned_cols=24 Identities=17% Similarity=0.542 Sum_probs=21.3
Q ss_pred chhhhcchhHHHHHHHHhHhccCc
Q psy3383 108 GHCWARLKPHATAIIQEVLFPFLS 131 (161)
Q Consensus 108 ~~~~~~lkp~l~~li~~vifP~l~ 131 (161)
..||+.-++++.+++.+++||.+-
T Consensus 36 e~TW~~A~~QIKtVVN~VVFPaid 59 (111)
T PF12963_consen 36 ESTWKDASGQIKTVVNNVVFPAID 59 (111)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHH
Confidence 469999999999999999999763
No 24
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=33.37 E-value=22 Score=20.05 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=8.3
Q ss_pred ccccCChHHHHHH
Q psy3383 138 ELWSSDPHEYIRV 150 (161)
Q Consensus 138 ElfedDP~EYIr~ 150 (161)
|.|+ ||..||.+
T Consensus 8 eEF~-dp~~yi~~ 19 (34)
T PF02375_consen 8 EEFK-DPIKYISS 19 (34)
T ss_dssp HHHS--HHHHHHH
T ss_pred HHHh-CHHHHHHH
Confidence 3454 99999987
No 25
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3). Cullins are found throughout eukaryotes. Humans express seven cullins (Cul1, 2, 3, 4A, 4B, 5 and 7), each forming part of a multi-subunit ubiquitin complex. Cullin-RING ubiquitin ligases (CRLs), such as Cul1 (SCF) [], play an essential role in targeting proteins for ubiquitin-mediated destruction; as such, they are diverse in terms of composition and function, regulating many different processes from glucose sensing and DNA replication to limb patterning and circadian rhythms. The catalytic core of CRLs consists of a RING protein and a cullin family member. For Cul1, the C-terminal cullin-homology domain binds the RING protein. The RING protein appears to function as a docking site for ubiquitin-conjugating enzymes (E2s). Other proteins contain a cullin-homology domain, such as the APC2 subunit of the anaphase-promoting complex/cyclosome and the p53 cytoplasmic anchor PARC; both APC2 and PARC have ubiquitin ligase activity. The N-terminal region of cullins is more variable, and is used to interact with specific adaptor proteins [, , ]. This entry represents the N-terminal region of cullin proteins, which consists of several domains, including cullin repeat domain, a 4-helical bundle domain, an alpha+beta domain, and a winged helix-like domain.; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 2WZK_A 3DQV_D 3DPL_C 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_A 1U6G_A 4A0K_A ....
Probab=32.34 E-value=2.7e+02 Score=24.67 Aligned_cols=112 Identities=16% Similarity=0.247 Sum_probs=65.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhc
Q psy3383 27 TPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVG 106 (161)
Q Consensus 27 ~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~ 106 (161)
...|.--+-++..+..+|.-... ..+... -|.+.+..+....++.++++++...+.|..++...+..+++.+...-
T Consensus 72 ~~~w~~~~~~~~~i~~if~yLdr-~yv~~~--~f~~~v~~~~~~~i~~~ll~~I~~~R~g~~~~~~~l~~~~~~~~~l~- 147 (588)
T PF00888_consen 72 VQEWEKYKKAIKYISDIFSYLDR-NYVKRN--LFREQVFKPLKDKIINALLNLIKNEREGEKIDRSLLKNVIEMFVELG- 147 (588)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHH-TSTTTT--HHHHHTTTSHHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH-hhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccc-
Confidence 34455444444554444433221 122222 66666666777889999999999988877777778888888877643
Q ss_pred Cchhhh-cchhH-HHHHHHHhHhccCcCCcchhccccCChHHHHHHh
Q psy3383 107 HGHCWA-RLKPH-ATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVK 151 (161)
Q Consensus 107 ~~~~~~-~lkp~-l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~ 151 (161)
....|. .+.+. ++..-... ..+-+.++++.||++.-
T Consensus 148 ~~~~y~~~fe~~~l~~t~~yY---------~~~~i~~~~~~~Yl~~v 185 (588)
T PF00888_consen 148 SLEVYEEEFEKPFLEETKEYY---------KSESIQENSVSEYLKKV 185 (588)
T ss_dssp HTHHHHHHTHHHHHHHHHHHH---------HHHHHHHSHHHHHHHHH
T ss_pred hHHhhHHHHHHHHHHHHHHHH---------HHHHHHhcCchhHHHHH
Confidence 233443 34333 33333322 11115566888898753
No 26
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=31.62 E-value=2.6e+02 Score=22.85 Aligned_cols=70 Identities=9% Similarity=0.169 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCchh
Q psy3383 31 KCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHC 110 (161)
Q Consensus 31 K~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~ 110 (161)
+.+..++.++.-++++|.+ +. ....+.|+..+++.++.- ..+|++-.+++.+...++ .
T Consensus 97 ~~R~~~~~ll~~l~~~~~~---------~l-----~~~~~~fv~~~i~~~~gE-----kDPRnLl~~F~l~~~i~~---~ 154 (262)
T PF14500_consen 97 STRYAVYQLLDSLLENHRE---------AL-----QSMGDDFVYGFIQLIDGE-----KDPRNLLLSFKLLKVILQ---E 154 (262)
T ss_pred HHHHHHHHHHHHHHHHhHH---------HH-----HhchhHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHHH---h
Confidence 4455555555555555443 11 344567788777777642 278999999999886543 4
Q ss_pred hhcchhHHHHHHH
Q psy3383 111 WARLKPHATAIIQ 123 (161)
Q Consensus 111 ~~~lkp~l~~li~ 123 (161)
|.. .++.+.+..
T Consensus 155 ~~~-~~~~e~lFd 166 (262)
T PF14500_consen 155 FDI-SEFAEDLFD 166 (262)
T ss_pred ccc-chhHHHHHH
Confidence 454 555555553
No 27
>KOG2059|consensus
Probab=30.06 E-value=1.4e+02 Score=28.30 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHH--HHHHhh-cCcccCHHHHHHHHHHHHHhhcC
Q psy3383 31 KCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLA--TLAQYR-AGHYISPRVMQQALNYLTQAVGH 107 (161)
Q Consensus 31 K~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~--ll~~~~-~~~~~~~~~~~~~l~fL~~~v~~ 107 (161)
++|-=+...|.|||.-+|.. .+|+..... +..... ++.+-++.+.++++.=+-..+..
T Consensus 315 ~~kqdva~~LVrLfl~~~r~-------------------~pfl~~L~~~ei~rtqD~NTlFRgNSLasK~mde~mkl~Gm 375 (800)
T KOG2059|consen 315 REKQDVARPLVRLFLHSDRI-------------------VPFLSALAVNEIKRTQDPNTIFRGNSLASKMMDEFMKLAGM 375 (800)
T ss_pred hhhhhHHHHHHHHHhcccch-------------------HHHHHHHHHHHHHhcCCCceeeeccchHHHHHHHHHHHhch
Confidence 38888899999999988862 223333222 222222 25788888888776544444445
Q ss_pred chhhhcchhHHHHHHHH
Q psy3383 108 GHCWARLKPHATAIIQE 124 (161)
Q Consensus 108 ~~~~~~lkp~l~~li~~ 124 (161)
-.....|||.++.|+++
T Consensus 376 ~YLh~tLkPvi~kI~ee 392 (800)
T KOG2059|consen 376 HYLHVTLKPVIDKIFEE 392 (800)
T ss_pred HHHHHHhHHHHHHHHhh
Confidence 44445789999999874
No 28
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=29.69 E-value=1.6e+02 Score=19.08 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=17.7
Q ss_pred HHHHHHhhc-CcccCHHHHHHHHHHHHH
Q psy3383 77 LATLAQYRA-GHYISPRVMQQALNYLTQ 103 (161)
Q Consensus 77 l~ll~~~~~-~~~~~~~~~~~~l~fL~~ 103 (161)
|+.|....+ .-+.++..+-.+++||..
T Consensus 24 W~~L~~~i~i~CF~~~PsikSSLkFLRk 51 (64)
T PF09905_consen 24 WEELGERININCFKNNPSIKSSLKFLRK 51 (64)
T ss_dssp HHHHHHHTTSSSTTSS--HHHHHHHHHH
T ss_pred HHHHHhhcccccCCCCCchHHHHHHHhc
Confidence 445555444 578888999999999874
No 29
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=29.69 E-value=1.9e+02 Score=24.47 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHH-HHHHhh--cCcccCHHHHHHHHHHHHHhhcCc
Q psy3383 32 CKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLA-TLAQYR--AGHYISPRVMQQALNYLTQAVGHG 108 (161)
Q Consensus 32 ~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~-ll~~~~--~~~~~~~~~~~~~l~fL~~~v~~~ 108 (161)
.|.=+...|.++|...|. +-+|+..... -++... +..+-++.++.+++......+.++
T Consensus 33 ~~~elA~~Lv~if~~~~~-------------------~~~~l~~l~~~Ev~~~~~~~tLFRgNSlaTK~m~~y~k~~G~~ 93 (310)
T cd05134 33 EKQEAAIPLVRLFLHYGK-------------------IVPFISAIASAEVNRTQDPNTIFRGNSLTSKCIDETMKLAGMH 93 (310)
T ss_pred cHHHHHHHHHHHHHhcCc-------------------HHHHHHHHHHHHHHhCCCcchhhhcCcHHHHHHHHHHHHHHHH
Confidence 344456677778877775 2233444333 233322 246778889999998887777666
Q ss_pred hhhhcchhHHHHHHH
Q psy3383 109 HCWARLKPHATAIIQ 123 (161)
Q Consensus 109 ~~~~~lkp~l~~li~ 123 (161)
...+.|+|.++.|++
T Consensus 94 YL~~tL~pvI~~i~~ 108 (310)
T cd05134 94 YLQVTLKPIIDEICQ 108 (310)
T ss_pred HHHHHHHHHHHHHHc
Confidence 555677777777764
No 30
>PF13184 KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW_A 1K0R_B 2ASB_A.
Probab=28.65 E-value=38 Score=22.03 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=14.4
Q ss_pred hhccccCChHHHHHHhccCcC
Q psy3383 136 DEELWSSDPHEYIRVKFGELG 156 (161)
Q Consensus 136 D~ElfedDP~EYIr~~~d~~~ 156 (161)
|+=.|.+||.+||..-+-+..
T Consensus 43 dvV~~s~d~~~fI~nal~Pa~ 63 (69)
T PF13184_consen 43 DVVEYSDDPKEFIKNALSPAK 63 (69)
T ss_dssp EEEE--SSHHHHHHHHTTTS-
T ss_pred EEEEcCCCHHHHHHHhCCCCe
Confidence 555799999999998776653
No 31
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=28.42 E-value=2.1e+02 Score=24.73 Aligned_cols=41 Identities=12% Similarity=0.388 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHhhcCc-hhhhcc-hhHHHHHHHHhHhccCc
Q psy3383 90 SPRVMQQALNYLTQAVGHG-HCWARL-KPHATAIIQEVLFPFLS 131 (161)
Q Consensus 90 ~~~~~~~~l~fL~~~v~~~-~~~~~l-kp~l~~li~~vifP~l~ 131 (161)
+..+....++||+..+..+ ..|.-+ ..+...+. .++||.+.
T Consensus 287 t~~~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~VF-~I~l~Y~~ 329 (356)
T PF03542_consen 287 TPNMAIHILEFLSSLSRLPNHLYSNFTEDEYKRVF-AIALPYTQ 329 (356)
T ss_pred chhhHHHHHHHHHHHhhCcHHHhcCCCHHHHHHHH-HHHhhccc
Confidence 4456668999999999999 999866 66777666 48888864
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=27.82 E-value=2.7e+02 Score=24.17 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhCC
Q psy3383 27 TPWWKCKKWALHILSRIFERYGS 49 (161)
Q Consensus 27 ~~~wK~KKwa~~il~rl~~Ryg~ 49 (161)
++-+-++|-|+..+.+++..+.+
T Consensus 125 ~~~~~VRk~A~~~l~~i~~~~p~ 147 (526)
T PF01602_consen 125 DPSPYVRKKAALALLKIYRKDPD 147 (526)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCHC
T ss_pred CCchHHHHHHHHHHHHHhccCHH
Confidence 34448899999999999999544
No 33
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=27.57 E-value=1.9e+02 Score=21.05 Aligned_cols=57 Identities=11% Similarity=0.330 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCc
Q psy3383 36 ALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHG 108 (161)
Q Consensus 36 a~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~ 108 (161)
++..++|+.+....| +.|+..+++...+-.++... .....|.+.....|+...++.+
T Consensus 37 s~EvVn~L~~~~~~p---------------~efl~~yI~~cI~~ce~~kd-~~~q~R~VRlvcvfl~sLir~~ 93 (126)
T PF10155_consen 37 SMEVVNRLTTSFSLP---------------QEFLHMYISNCIKSCESIKD-KYMQNRLVRLVCVFLQSLIRNK 93 (126)
T ss_pred HHHHHHHHHcCCCCc---------------HHHHHHHHHHHHHHHHhhcc-cccccchhhhHHHHHHHHHHcC
Confidence 566667776665333 33444444445555554332 3445677777788888777653
No 34
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=27.23 E-value=2.9e+02 Score=21.15 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=18.2
Q ss_pred hccchhHHHHHHHHHHHHHHHHHh
Q psy3383 24 RADTPWWKCKKWALHILSRIFERY 47 (161)
Q Consensus 24 r~~~~~wK~KKwa~~il~rl~~Ry 47 (161)
++...=|+.+.=|+..+.++..-+
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~ 38 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGN 38 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-
T ss_pred cCCccCHHHHHHHHHHHHHHHHcC
Confidence 344445899999999999999876
No 35
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=26.94 E-value=37 Score=20.03 Aligned_cols=12 Identities=33% Similarity=0.376 Sum_probs=9.3
Q ss_pred CChHHHHHHhcc
Q psy3383 142 SDPHEYIRVKFG 153 (161)
Q Consensus 142 dDP~EYIr~~~d 153 (161)
.||..||++--+
T Consensus 13 ~Dp~~yi~~i~~ 24 (42)
T smart00545 13 KDPLAYISKIRP 24 (42)
T ss_pred HCHHHHHHHHHH
Confidence 499999997443
No 36
>KOG0211|consensus
Probab=26.87 E-value=2.2e+02 Score=27.20 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=28.1
Q ss_pred CcccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHHH
Q psy3383 86 GHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAII 122 (161)
Q Consensus 86 ~~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li 122 (161)
+.|+..+.+..++..|..+.+...+-+.|-|.+..+.
T Consensus 569 ~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~ 605 (759)
T KOG0211|consen 569 DNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLV 605 (759)
T ss_pred cccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhc
Confidence 3578888888899999999888877777766655544
No 37
>COG3350 Uncharacterized conserved protein [Function unknown]
Probab=26.08 E-value=25 Score=21.98 Aligned_cols=19 Identities=21% Similarity=0.660 Sum_probs=15.4
Q ss_pred CcchhccccCChHHHHHHh
Q psy3383 133 TDADEELWSSDPHEYIRVK 151 (161)
Q Consensus 133 ~~~D~ElfedDP~EYIr~~ 151 (161)
|++=.+.|.++|.-|+|..
T Consensus 32 se~~~~~F~~~P~~y~~~~ 50 (53)
T COG3350 32 SEECKEKFKDNPEKYLRLE 50 (53)
T ss_pred CHHHHHHHHHCHHHHhhcc
Confidence 5566788999999999863
No 38
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=25.91 E-value=2.3e+02 Score=19.69 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhCCC-C-CC-CcchHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCchhh
Q psy3383 35 WALHILSRIFERYGSP-G-GV-VSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCW 111 (161)
Q Consensus 35 wa~~il~rl~~Ryg~~-~-~~-~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~ 111 (161)
-++.++..+..-.++- + .. .+..+++.+.+.++ +|.+++.+.++++....+. ...+...+++-+.+.++-...-
T Consensus 44 ~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~-~~~i~~~l~~~l~~~~~~~--~~~~~~~~L~~l~s~i~~~~~~ 120 (148)
T PF08389_consen 44 LVLRILRILPEEITDFRRSSLSQERRRELKDALRSN-SPDILEILSQILSQSSSEA--NEELVKAALKCLKSWISWIPIE 120 (148)
T ss_dssp HHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCHCC--HHHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccc--HHHHHHHHHHHHHHHHHhCCHH
Confidence 4566666666666541 1 12 23445665555555 8999999999998865422 3788999999999998744443
Q ss_pred hcch
Q psy3383 112 ARLK 115 (161)
Q Consensus 112 ~~lk 115 (161)
....
T Consensus 121 ~i~~ 124 (148)
T PF08389_consen 121 LIIN 124 (148)
T ss_dssp HHHS
T ss_pred Hhcc
Confidence 3443
No 39
>KOG4202|consensus
Probab=25.75 E-value=35 Score=27.02 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=17.5
Q ss_pred hccccCChHHHHHHhccCcC
Q psy3383 137 EELWSSDPHEYIRVKFGELG 156 (161)
Q Consensus 137 ~ElfedDP~EYIr~~~d~~~ 156 (161)
+--|.++|.|||++-.|.++
T Consensus 96 VGVF~nqp~e~il~~~~~~~ 115 (227)
T KOG4202|consen 96 VGVFVNQPEETILRAADSSD 115 (227)
T ss_pred EEEeecCCHHHHHHHHhhcC
Confidence 78899999999999887664
No 40
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=25.54 E-value=2.7e+02 Score=23.82 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=24.6
Q ss_pred CcccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHHHH
Q psy3383 86 GHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQ 123 (161)
Q Consensus 86 ~~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li~ 123 (161)
..+-++.++..++.-....+.++...+.|.|.+..|++
T Consensus 74 tLFR~NSlaTK~m~~y~k~~G~~YL~~~L~p~I~~I~~ 111 (337)
T cd05395 74 TLFRSNSLASKSMESFLKVAGMQYLHRVLGPIINRVFE 111 (337)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35666777888777666665544444567777777664
No 41
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=25.35 E-value=2.7e+02 Score=21.28 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhCC
Q psy3383 27 TPWWKCKKWALHILSRIFERYGS 49 (161)
Q Consensus 27 ~~~wK~KKwa~~il~rl~~Ryg~ 49 (161)
....++-|-|++.+..++.+.|+
T Consensus 64 d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 64 DLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp HH---HHHHHHHHHHHHHHHHGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHhH
Confidence 44567889999999999999987
No 42
>PF09418 DUF2009: Protein of unknown function (DUF2009); InterPro: IPR018553 This is a eukaryotic family of proteins with unknown function.
Probab=25.05 E-value=8.2 Score=34.28 Aligned_cols=76 Identities=21% Similarity=0.369 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHHHHHhhc--CcccCHHHHH-------HHHHHHHHhhcCchhhhcchhHHHHHHHHhHhccCcCCcchh
Q psy3383 67 TFSAGILDVLLATLAQYRA--GHYISPRVMQ-------QALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADE 137 (161)
Q Consensus 67 ~~~~~~l~~~l~ll~~~~~--~~~~~~~~~~-------~~l~fL~~~v~~~~~~~~lkp~l~~li~~vifP~l~~~~~D~ 137 (161)
+-+|.+-+++-++|..... |.|++..+++ +|+-|+..=...+ +++.|-+..|- +=.
T Consensus 310 q~~p~~~~~m~~il~~~q~~~~~WvGssviHLGD~~VPNal~FiDKYtQvp---rIl~Pi~~~l~------------~i~ 374 (458)
T PF09418_consen 310 QQCPKVYRAMHRILSETQSKLGGWVGSSVIHLGDHNVPNALMFIDKYTQVP---RILIPIVQTLD------------KIP 374 (458)
T ss_pred ccCChHHHHHHHHHHHHHHhcCCccCceeeecCCCCCCceeeeeeccccch---HHHHHHHHHHH------------HHH
Confidence 3467777777777776543 6888877776 5777876543332 34445443332 334
Q ss_pred ccccCChH--HHHHHhccCcCC
Q psy3383 138 ELWSSDPH--EYIRVKFGELGP 157 (161)
Q Consensus 138 ElfedDP~--EYIr~~~d~~~d 157 (161)
++.++||. +||+..+.+.++
T Consensus 375 ~l~~~~~~l~~yi~~~~g~~~~ 396 (458)
T PF09418_consen 375 ELAKKDPHLRNYIESEFGSVEE 396 (458)
T ss_pred HHHhcCHHHHHHHHHhcCCHHH
Confidence 55666775 788777655443
No 43
>COG3351 FlaD Putative archaeal flagellar protein D/E [Cell motility and secretion]
Probab=24.96 E-value=2.7e+02 Score=22.29 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=22.3
Q ss_pred HHHHHHhhcCcccCHHHHHHHHHHHHHhh
Q psy3383 77 LATLAQYRAGHYISPRVMQQALNYLTQAV 105 (161)
Q Consensus 77 l~ll~~~~~~~~~~~~~~~~~l~fL~~~v 105 (161)
+.+|..+-.=.|+|++++.+++.|+...-
T Consensus 128 ~dvldyYe~iGWIs~~v~~qLl~f~kg~~ 156 (214)
T COG3351 128 LDVLDYYESIGWISEKVLEQLLKFAKGTK 156 (214)
T ss_pred HHHHHHHHHhhhccHHHHHHHHHHHhcCC
Confidence 34666664447999999999999998643
No 44
>KOG1248|consensus
Probab=24.55 E-value=1.9e+02 Score=28.95 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHHHHHh
Q psy3383 70 AGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEV 125 (161)
Q Consensus 70 ~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li~~v 125 (161)
.+++..+++.+..+-.+. +..+...|+.|+..+| .+..=..+.||+++|+..+
T Consensus 822 ~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv-~~~pe~~l~~~~~~LL~sl 874 (1176)
T KOG1248|consen 822 DETLEKLISMVCLYLASN--SREIAKAAIGFIKVLV-YKFPEECLSPHLEELLPSL 874 (1176)
T ss_pred HHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHH-HcCCHHHHhhhHHHHHHHH
Confidence 344555555555543222 5677778888888776 3444446688888877654
No 45
>KOG0419|consensus
Probab=23.88 E-value=37 Score=25.39 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=17.4
Q ss_pred CcchhccccCChHHHHHHhccCc
Q psy3383 133 TDADEELWSSDPHEYIRVKFGEL 155 (161)
Q Consensus 133 ~~~D~ElfedDP~EYIr~~~d~~ 155 (161)
+-+-..||.+||.||+|+--+..
T Consensus 123 N~eAA~Lf~e~~rey~rrVk~~v 145 (152)
T KOG0419|consen 123 NSEAARLFSENKREYERRVKETV 145 (152)
T ss_pred cHHHHHHHhhChHHHHHHHHHHH
Confidence 34455889999999999865543
No 46
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=23.30 E-value=2.6e+02 Score=19.22 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHHHHHhHhccCcCCcchhcccc
Q psy3383 66 KTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWS 141 (161)
Q Consensus 66 ~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li~~vifP~l~~~~~D~Elfe 141 (161)
..++..|+..+-.++....+..-+...+-..+-.-....+ .+..|..+.+.+...+.+.+-. .++++..+-|.
T Consensus 58 ~~~~~~~~~~l~~~v~~l~~~~~l~~~l~~lg~~H~~~~v-~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~aW~ 130 (140)
T cd01040 58 KAHGKRVLNALDEAIKNLDDLEALKALLAKLGRKHAKRGV-DPEHFKLFGEALLEVLAEVLGD--DFTPEVKAAWD 130 (140)
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHhCC--cCCHHHHHHHH
Confidence 3455566666666666543311112222222333333333 4555555555555555444333 26666666664
No 47
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=23.07 E-value=24 Score=26.11 Aligned_cols=46 Identities=22% Similarity=0.122 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q psy3383 31 KCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYR 84 (161)
Q Consensus 31 K~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~ 84 (161)
+++-.++.-+...+..-+ -.+-++.++....+.|-++.-+.|...+
T Consensus 24 ~VRD~Vl~~l~~~~~~~~--------~~~ea~~~i~~~~~~Ie~~A~~~l~~~G 69 (130)
T PF09551_consen 24 KVRDAVLEYLSPWLSQAK--------SKEEAREVIRENLPEIEQIAEEVLAEEG 69 (130)
T ss_pred HHHHHHHHHHHHHhccCC--------CHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 445555555544444222 1366777889999999999988888764
No 48
>TIGR01337 apcB allophycocyanin, beta subunit. The alpha and beta subunits of allophycocyanin form heterodimers, six of which associate into larger aggregates as part of the phycobilisome, a light-harvesting complex of phycobiliproteins and linker proteins. This model describes allophycocyanin beta subunit. Other, homologous phyobiliproteins include allophycocyanin alpha chain and the phycocyanin and phycoerythrin alpha and beta chains.
Probab=22.83 E-value=2.4e+02 Score=21.53 Aligned_cols=52 Identities=15% Similarity=0.299 Sum_probs=40.6
Q ss_pred HHHHHHHHhh-cCcccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHHHHHhH
Q psy3383 75 VLLATLAQYR-AGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVL 126 (161)
Q Consensus 75 ~~l~ll~~~~-~~~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li~~vi 126 (161)
++-+++.+.. .|+|+++.=+..+-.|+.++-..=...+.|..+.+.|+.+..
T Consensus 3 ~it~~i~~AD~~gRYls~~eL~~l~~~~~~~~~Rl~aa~~l~~na~~Iv~~A~ 55 (167)
T TIGR01337 3 AITNIINAYDLTGKYLDDNAVTKLKGYFQTGELRLRAAAIINANSATIIKEAA 55 (167)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445566654 389999999999999999987777777888888888887653
No 49
>KOG2549|consensus
Probab=22.42 E-value=4.3e+02 Score=24.41 Aligned_cols=76 Identities=16% Similarity=0.302 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCc
Q psy3383 29 WWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHG 108 (161)
Q Consensus 29 ~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~ 108 (161)
.|-++.-|...+..++.+||+ .. ++..|.++++..+.+..... +-.+.|-++.=|+.- ...
T Consensus 311 hwaLRDfAA~ll~~i~k~f~~---------~y-----~~L~~Rit~tl~k~l~D~~~----~~st~YGai~gL~~l-g~~ 371 (576)
T KOG2549|consen 311 HWALRDFAARLLAQICKNFST---------LY-----NNLQPRITRTLSKALLDNKK----PLSTHYGAIAGLSEL-GHE 371 (576)
T ss_pred hHHHHHHHHHHHHHHHHhhhh---------HH-----HHHHHHHHHHHHHHhcCCCC----CchhhhhHHHHHHHh-hhh
Confidence 689999999999999999998 22 45777788877776654322 223555566666543 222
Q ss_pred hhhhcchhHHHHHHH
Q psy3383 109 HCWARLKPHATAIIQ 123 (161)
Q Consensus 109 ~~~~~lkp~l~~li~ 123 (161)
..-..+.|++..+..
T Consensus 372 ~I~~~ilp~L~~~~~ 386 (576)
T KOG2549|consen 372 VIRTVILPNLKEYNE 386 (576)
T ss_pred hhhheeccchHHHHH
Confidence 222355666665554
No 50
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=22.03 E-value=3.7e+02 Score=20.56 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=0.0
Q ss_pred hhhHHHH-----HHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCch-hhhcc-hhHHHHHHHHh
Q psy3383 67 TFSAGIL-----DVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGH-CWARL-KPHATAIIQEV 125 (161)
Q Consensus 67 ~~~~~~l-----~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~~-~~~~l-kp~l~~li~~v 125 (161)
+||.+|+ ....++++.-....+.....+.++++=+.....++. .|..+ .+.+..+++.+
T Consensus 2 TFA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~V 67 (160)
T PF11841_consen 2 TFAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYV 67 (160)
T ss_pred chHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHH
No 51
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=21.54 E-value=3.5e+02 Score=23.79 Aligned_cols=45 Identities=11% Similarity=0.067 Sum_probs=31.1
Q ss_pred CcccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHHHHHhHhccCc
Q psy3383 86 GHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLS 131 (161)
Q Consensus 86 ~~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li~~vifP~l~ 131 (161)
|..+++.-+..+..|-+.+.+.....+.+...++.-+. .|-|||+
T Consensus 201 G~~~~~~Di~~i~~~ae~i~~L~~~R~~l~~Yi~~~M~-~vAPNlt 245 (395)
T COG1498 201 GADLSEEDIDNIRELAEIILELYELREQLEEYIESKMS-EIAPNLT 245 (395)
T ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCccHH
Confidence 78889888888888877766555444556666666664 5667765
No 52
>KOG4508|consensus
Probab=21.15 E-value=2.8e+02 Score=24.69 Aligned_cols=22 Identities=14% Similarity=0.378 Sum_probs=18.9
Q ss_pred cccCHHHHHHHHHHHHHhhcCc
Q psy3383 87 HYISPRVMQQALNYLTQAVGHG 108 (161)
Q Consensus 87 ~~~~~~~~~~~l~fL~~~v~~~ 108 (161)
.|..+|++....-||...++.+
T Consensus 454 kymqnRlVRLVcvflqsLiRnk 475 (522)
T KOG4508|consen 454 KYMQNRLVRLVCVFLQSLIRNK 475 (522)
T ss_pred HHhhhhhHHHHHHHHHHHHHHh
Confidence 6778899999999999988764
No 53
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=21.13 E-value=23 Score=20.92 Aligned_cols=18 Identities=17% Similarity=0.517 Sum_probs=13.0
Q ss_pred CcchhccccCChHHHHHH
Q psy3383 133 TDADEELWSSDPHEYIRV 150 (161)
Q Consensus 133 ~~~D~ElfedDP~EYIr~ 150 (161)
|+.=.+.|+.||+.|+-.
T Consensus 29 S~~C~~~F~~~Pe~Y~~~ 46 (47)
T PF04945_consen 29 SEGCKEKFEANPERYLPQ 46 (47)
T ss_dssp SHHHHHHHHCSHHHCTT-
T ss_pred CHHHHHHHHHCHHHHhcC
Confidence 455567899999998743
No 54
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=20.85 E-value=3e+02 Score=19.09 Aligned_cols=75 Identities=19% Similarity=0.280 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCchh
Q psy3383 31 KCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHC 110 (161)
Q Consensus 31 K~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~ 110 (161)
--|+.+++-+..+.. -|. -.+..++|++..+.-.-++.- -+. .....++..+-..++.
T Consensus 30 ~ek~~~l~si~~lI~-~~~-------------~~i~~~~pQI~a~L~sal~~~----~l~-~~al~~W~~fi~~L~~--- 87 (107)
T PF08064_consen 30 PEKKRALRSIEELIK-LGG-------------SHISSARPQIMACLQSALEIP----ELR-EEALSCWNCFIKTLDE--- 87 (107)
T ss_pred HHHHHHHHHHHHHHH-HhH-------------HHHHHHHHHHHHHHHHHhCCh----hhH-HHHHHHHHHHHHHCCH---
Confidence 457888888888887 343 134677777666555444322 112 2334555555555544
Q ss_pred hhcchhHHHHHHHHhHhcc
Q psy3383 111 WARLKPHATAIIQEVLFPF 129 (161)
Q Consensus 111 ~~~lkp~l~~li~~vifP~ 129 (161)
+.+.|.+++++. +++|.
T Consensus 88 -~~l~~ll~~~~~-~l~~~ 104 (107)
T PF08064_consen 88 -EDLGPLLDQIFA-ILLPL 104 (107)
T ss_pred -HHHHHHHHHHHH-HHHHh
Confidence 567777777775 45554
No 55
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=20.79 E-value=5.6e+02 Score=22.22 Aligned_cols=124 Identities=18% Similarity=0.201 Sum_probs=57.8
Q ss_pred HhhcCCCCCCCC---CCChhhhccchhHHHHHHHHHHHHHHHHHhCCCC---CCC---------------cchHHHHHHH
Q psy3383 6 QVAERPVPEHTL---TLDEDERADTPWWKCKKWALHILSRIFERYGSPG---GVV---------------SDYEEFARWY 64 (161)
Q Consensus 6 ~ii~~~~P~~~~---~~d~~~r~~~~~wK~KKwa~~il~rl~~Ryg~~~---~~~---------------~~~~~fa~~f 64 (161)
.-|=+++|+-.. ..|+|+--..|-|.=-.=++.++.|++....... ..+ ..-+++.+.+
T Consensus 77 ~NifR~lP~~~~~~~~~~~d~~~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~ 156 (409)
T PF01603_consen 77 ANIFRPLPPIPNPSFDPDDDEPFLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTI 156 (409)
T ss_dssp HHH-S-----SS--S-GGG------TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHH
T ss_pred HhccCCCCCcccccCCccccccccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 334467665433 2344445668888887778888888877654322 111 1223333333
Q ss_pred Hhhh-------hHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCchhhh-cchhHHHHHHHHhHhccCcCC
Q psy3383 65 LKTF-------SAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWA-RLKPHATAIIQEVLFPFLSYT 133 (161)
Q Consensus 65 ~~~~-------~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~-~lkp~l~~li~~vifP~l~~~ 133 (161)
...+ -+-+.+.+-+++..+-.+ -.....+.-+|++|.+.++. +. -+|+-....+..+++|+....
T Consensus 157 l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e-~~~~~gI~elLeil~sii~g---f~~plk~eh~~fl~~vllPLh~~~ 229 (409)
T PF01603_consen 157 LHRIYGKFPNLRSFIRKSINNIFYRFIYE-TERHNGIAELLEILGSIING---FAVPLKEEHKQFLRKVLLPLHKSP 229 (409)
T ss_dssp HHHHHHH-TTTHHHHHHHHHHHHHHHHHT-TS--STHHHHHHHHHHHHTT-----SS--HHHHHHHHHTTGGGGGST
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcC-cccccCHHHHHHHHHHHHhc---cCCCCcHHHHHHHHHHHHHHhcCC
Confidence 3332 233334444444443220 11233566778888887642 44 567767777778999998765
No 56
>CHL00171 cpcB phycocyanin beta subunit; Reviewed
Probab=20.54 E-value=3e+02 Score=21.16 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=40.1
Q ss_pred HHHHHHHhh-cCcccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHHHHHhH
Q psy3383 76 LLATLAQYR-AGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVL 126 (161)
Q Consensus 76 ~l~ll~~~~-~~~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li~~vi 126 (161)
+=+++.+.. +|+|+++.=+..+-.|+.++-..=...+.|..+.+.|+.+..
T Consensus 5 it~~i~~AD~~gRyls~~EL~~l~~~~~~~~~Rl~aa~~L~~na~~IV~~A~ 56 (172)
T CHL00171 5 FAKVVAQADARGEFLSNTQLDALSKMVAEGNKRLDAVNKINANASTIVTNAA 56 (172)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334555544 389999999999999999987777777889999888887653
No 57
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=20.26 E-value=2e+02 Score=25.33 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCchhhhcc------hhHH-HHHHHHhHhccC
Q psy3383 65 LKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARL------KPHA-TAIIQEVLFPFL 130 (161)
Q Consensus 65 ~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~~l------kp~l-~~li~~vifP~l 130 (161)
.++|++.+++..++-|++.++ ++.+...+.|+...+.....=.++ +|.+ ..+++++++|++
T Consensus 236 l~~yl~~I~~lll~RLq~skT-----~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~ 303 (435)
T PF03378_consen 236 LEPYLKQIFTLLLTRLQSSKT-----EKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDL 303 (435)
T ss_dssp HGGGHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHG
T ss_pred HHHHHHHHHHHHHHHHhhCCc-----HHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCch
No 58
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=20.08 E-value=4.8e+02 Score=22.44 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=22.7
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy3383 43 IFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQ 82 (161)
Q Consensus 43 l~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~ 82 (161)
+|.||......++-+.+. ++..+.|+.++++.+-.+.+.
T Consensus 1 ifkr~r~~~~s~~l~~ei-k~vl~~~~~pll~l~~~~~~~ 39 (370)
T PF08506_consen 1 IFKRYRYQFRSDELYTEI-KYVLDKFAEPLLELFKQTDQL 39 (370)
T ss_dssp HHGGGTTS---CTHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 578888755566667776 445567777666555444433
Done!