Query psy3383
Match_columns 161
No_of_seqs 121 out of 369
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 23:38:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 99.9 1.5E-21 5.1E-26 180.0 11.7 138 2-156 234-373 (960)
2 3m1i_C Exportin-1; heat repeat 97.7 7.5E-05 2.6E-09 69.5 7.2 121 31-155 276-424 (1049)
3 4fdd_A Transportin-1; heat rep 97.5 0.0002 6.8E-09 64.7 7.0 97 29-146 228-324 (852)
4 2x1g_F Cadmus; transport prote 96.1 0.014 4.9E-07 53.3 8.0 104 34-146 310-430 (971)
5 2x19_B Importin-13; nuclear tr 95.9 0.0095 3.2E-07 54.2 5.6 103 34-146 302-418 (963)
6 1ibr_B P95, importin beta-1 su 95.7 0.0083 2.8E-07 49.1 4.2 94 28-144 229-342 (462)
7 2bpt_A Importin beta-1 subunit 93.1 0.078 2.7E-06 46.9 4.3 62 27-108 235-297 (861)
8 1qgr_A Protein (importin beta 81.0 2 6.9E-05 37.9 5.3 87 29-136 230-336 (876)
9 2qk1_A Protein STU2; STU2P, XM 55.2 22 0.00075 27.2 5.5 84 34-123 100-194 (249)
10 4atg_A TAF6; transcription, TF 51.8 74 0.0025 23.9 7.9 75 31-124 105-179 (196)
11 1w9c_A CRM1 protein, exportin 47.0 65 0.0022 26.2 7.2 91 35-133 186-286 (321)
12 1w9c_A CRM1 protein, exportin 39.9 1E+02 0.0035 25.0 7.4 104 25-142 34-137 (321)
13 3m1i_C Exportin-1; heat repeat 37.2 1E+02 0.0034 28.3 7.7 49 31-84 864-912 (1049)
14 4hat_C Exportin-1; heat repeat 37.0 1.5E+02 0.0051 27.6 8.9 72 64-145 748-819 (1023)
15 2gs0_B Cellular tumor antigen 31.7 7.4 0.00025 23.5 -0.5 21 129-149 23-46 (54)
16 3gjx_A Exportin-1; transport, 29.5 1.1E+02 0.0036 29.0 6.6 103 26-142 743-845 (1073)
17 2yy0_A C-MYC-binding protein; 29.0 8.9 0.0003 23.0 -0.5 12 142-153 1-12 (53)
18 1x46_A Globin chain, hemoglobi 28.8 1.2E+02 0.0042 20.7 5.5 113 18-141 6-136 (150)
19 3tj1_A RNA polymerase I-specif 25.4 3.6E+02 0.012 24.0 9.8 45 35-80 381-425 (649)
20 2ozb_B U4/U6 small nuclear rib 25.4 80 0.0027 24.8 4.3 36 83-118 100-135 (260)
21 3ibv_A Exportin-T; karyopherin 25.1 2.5E+02 0.0084 26.0 8.1 46 90-136 345-397 (980)
22 4hat_C Exportin-1; heat repeat 24.7 1.1E+02 0.0039 28.4 5.8 98 34-139 867-978 (1023)
23 2cxc_A NUSA; transcription ter 24.2 34 0.0012 24.6 1.7 21 135-155 69-89 (144)
24 2asb_A Transcription elongatio 23.9 32 0.0011 27.1 1.7 23 134-156 150-172 (251)
25 2l3i_A Aoxki4A, antimicrobial 23.9 17 0.00057 18.7 0.0 16 30-45 8-23 (30)
26 1kdl_A YOPD protein; yersinia, 23.8 54 0.0018 16.6 1.9 15 71-85 2-16 (26)
27 2jvw_A Uncharacterized protein 23.5 86 0.0029 20.6 3.4 27 77-103 30-57 (88)
28 3g46_A Globin-1; oxygen transp 22.4 1.8E+02 0.0063 19.8 5.4 99 27-141 20-136 (146)
29 1ash_A Hemoglobin (OXY); oxyge 20.6 1.5E+02 0.005 21.1 4.6 98 35-141 26-135 (150)
30 2qk1_A Protein STU2; STU2P, XM 20.5 1.6E+02 0.0056 22.1 5.2 74 27-121 157-234 (249)
31 2qk2_A LP04448P; mini spindles 20.1 2.5E+02 0.0086 20.3 7.3 34 90-123 146-179 (242)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.86 E-value=1.5e-21 Score=180.04 Aligned_cols=138 Identities=17% Similarity=0.279 Sum_probs=117.4
Q ss_pred hHHHHhhcCCCCCCCCCCChhhhccchhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHH
Q psy3383 2 EIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLA 81 (161)
Q Consensus 2 ~~f~~ii~~~~P~~~~~~d~~~r~~~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~ 81 (161)
++|.++++.+.|. ...|+|+++..+|||+|||+++++++++.||++ .| .++++.|++.+|+++.
T Consensus 234 ~~~~~~l~~~~p~--~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~---------~f-----~~~~~~~~~~~~~~l~ 297 (960)
T 1wa5_C 234 GIFHKYLSYSNPL--LEDPDETEHASVLIKVKSSIQELVQLYTTRYED---------VF-----GPMINEFIQITWNLLT 297 (960)
T ss_dssp HHHHHHHSCCSCC--CC------CCCHHHHHHHHHHHHHHHHHHHCHH---------HH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCc--ccCCcccccccHHHHHHHHHHHHHHHHHHHHHH---------HH-----HHHHHHHHHHHHHHHH
Confidence 5678888887763 334446678899999999999999999999975 55 6889999999999998
Q ss_pred HhhcCcccCHHHHHHHHHHHHHhhcCchhhhcch--hHHHHHHHHhHhccCcCCcchhccccCChHHHHHHhccCcC
Q psy3383 82 QYRAGHYISPRVMQQALNYLTQAVGHGHCWARLK--PHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELG 156 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~~lk--p~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~~~ 156 (161)
.+++ .+.+++++..+++|++.+++.+..|+.++ |++..|++.+|+|+|+++++|+|+|++||.||||++.|..+
T Consensus 298 ~~~~-~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d 373 (960)
T 1wa5_C 298 SISN-QPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSD 373 (960)
T ss_dssp HCCS-CTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC--
T ss_pred hcCC-CcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCccc
Confidence 7654 67899999999999999999999999997 99999999999999999999999999999999999987543
No 2
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.66 E-value=7.5e-05 Score=69.47 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHH-----------HHHHhCCCCCCCcc-hHHHHHHHHh---hh---------hHHHHHHHHHHHHHhhcC
Q psy3383 31 KCKKWALHILSR-----------IFERYGSPGGVVSD-YEEFARWYLK---TF---------SAGILDVLLATLAQYRAG 86 (161)
Q Consensus 31 K~KKwa~~il~r-----------l~~Ryg~~~~~~~~-~~~fa~~f~~---~~---------~~~~l~~~l~ll~~~~~~ 86 (161)
++++|.-.++.. +..+|+.++..+.+ .+.+++.|.. .+ ..+.+..+++.+-.....
T Consensus 276 ~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~ 355 (1049)
T 3m1i_C 276 QTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKI 355 (1049)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcC
Confidence 788887777763 44567654333222 2345544421 11 123344555554443221
Q ss_pred cccCHHHHHHHHHHHHHhhc----CchhhhcchhHHHHHHHHhHhccCcCCcchhccccCChHHHHHHhccCc
Q psy3383 87 HYISPRVMQQALNYLTQAVG----HGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGEL 155 (161)
Q Consensus 87 ~~~~~~~~~~~l~fL~~~v~----~~~~~~~lkp~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~~ 155 (161)
-.+.+...+++|....++ .+..++.++|++..|+ .++++.|++. +|.+.++|||.||+|+..+..
T Consensus 356 --~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv-~~ll~~m~~~-ed~~~~~dd~~e~~r~~~~d~ 424 (1049)
T 3m1i_C 356 --EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLR-LVIIENMVRP-EEVLVVENDEGEIVREFVKES 424 (1049)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHH-HHHHHTCCCC-TTCCEEECTTSCEEECSSCCH
T ss_pred --CcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH-HHHHHhcCCC-cceeeeeCCCCcchHhhhccc
Confidence 267888899999999887 6677889999999999 5899999984 466666779999988766543
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.46 E-value=0.0002 Score=64.73 Aligned_cols=97 Identities=20% Similarity=0.173 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCc
Q psy3383 29 WWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHG 108 (161)
Q Consensus 29 ~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~ 108 (161)
-..++++|+..+.++...++. +..++++.+++.+++.+.. ..+.+...+++|+....+.+
T Consensus 228 ~~~vr~~a~~~L~~l~~~~~~--------------~~~~~l~~l~~~l~~~~~~------~~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 228 EPEVRKNVCRALVMLLEVRMD--------------RLLPHMHNIVEYMLQRTQD------QDENVALEACEFWLTLAEQP 287 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHCHH--------------HHGGGHHHHHHHHHHHHTC------SSHHHHHHHHHHHHHHTTST
T ss_pred CHHHHHHHHHHHHHHHHhCHH--------------HHHHHHHHHHHHHHHHccC------CcHHHHHHHHHHHHHHhcch
Confidence 346889999999999887653 2367778888887776542 25788999999999998887
Q ss_pred hhhhcchhHHHHHHHHhHhccCcCCcchhccccCChHH
Q psy3383 109 HCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHE 146 (161)
Q Consensus 109 ~~~~~lkp~l~~li~~vifP~l~~~~~D~ElfedDP~E 146 (161)
..++.++|++..++. ++++.|+.+++|.++++.||.|
T Consensus 288 ~~~~~~~~~~~~l~p-~ll~~l~~~e~d~~~~~~d~~e 324 (852)
T 4fdd_A 288 ICKDVLVRHLPKLIP-VLVNGMKYSDIDIILLKGDVEG 324 (852)
T ss_dssp THHHHHTTTHHHHHH-HHHHHTSCCHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHH-HHHHHcCCcHhHHHHhcCCccc
Confidence 788889999999995 7799999999999988777654
No 4
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.14 E-value=0.014 Score=53.33 Aligned_cols=104 Identities=12% Similarity=0.127 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHH------hhhhHHHHHHHHHHHHHhhcCcc-cCHHHHHHHHHHHHHhhc
Q psy3383 34 KWALHILSRIFERYGSPGGVVSDYEEFARWYL------KTFSAGILDVLLATLAQYRAGHY-ISPRVMQQALNYLTQAVG 106 (161)
Q Consensus 34 Kwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~------~~~~~~~l~~~l~ll~~~~~~~~-~~~~~~~~~l~fL~~~v~ 106 (161)
+|..+.++|++.+||+.. ...|.+.+. .+.+..+++..++.... .|.+ ..+.+...++.|+...+.
T Consensus 310 ~~~~~~l~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~--~~~~~~~~~v~~~~l~fw~~l~~ 382 (971)
T 2x1g_F 310 EDIIVHIYMLFVSSVERH-----STLLLSGITSADPELSILVHRIVQEILHCTDK--PGIYPVEESCSTMALAFWYMLQD 382 (971)
T ss_dssp SHHHHHHHHHHHHHHHHT-----HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC--SSCTTTTCTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHhccCcccccHHHHHHHHHHHHHHcC--CCCCCcchhhhHHHHHHHHHHHH
Confidence 388888999999998611 112221111 13334444444443322 1222 367788889999876543
Q ss_pred ----------CchhhhcchhHHHHHHHHhHhccCcCCcchhccccCChHH
Q psy3383 107 ----------HGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHE 146 (161)
Q Consensus 107 ----------~~~~~~~lkp~l~~li~~vifP~l~~~~~D~ElfedDP~E 146 (161)
.+..+..++|++..|+..++....+.+++| +.++||.|
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~--~~~~d~~e 430 (971)
T 2x1g_F 383 EVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKS--LAKWSSDD 430 (971)
T ss_dssp HHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTT--TSCSCHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccc--ccccCHhH
Confidence 245677889999999998888776544444 44447765
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.88 E-value=0.0095 Score=54.23 Aligned_cols=103 Identities=18% Similarity=0.256 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhh-hHHHHHHHHHHHHHhhc--Ccc-cCHHHHHHHHHHHHHhhcC--
Q psy3383 34 KWALHILSRIFERYGSPGGVVSDYEEFARWYLKTF-SAGILDVLLATLAQYRA--GHY-ISPRVMQQALNYLTQAVGH-- 107 (161)
Q Consensus 34 Kwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~-~~~~l~~~l~ll~~~~~--~~~-~~~~~~~~~l~fL~~~v~~-- 107 (161)
.|..+.+++++.+||+ .....+.++. .++-+..+++.+-.... |.| ..+.+...++.|....++.
T Consensus 302 ~~~~~~~~~l~~~~~~---------~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~ 372 (963)
T 2x19_B 302 METSHGICRIAVALGE---------NHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDIL 372 (963)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH---------HhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHH
Confidence 4778888899999886 2222333211 22333455555443322 233 2556777888888776651
Q ss_pred -------chhhhcchhHHHHHHHHhHhccCcCCcc-hhccccCChHH
Q psy3383 108 -------GHCWARLKPHATAIIQEVLFPFLSYTDA-DEELWSSDPHE 146 (161)
Q Consensus 108 -------~~~~~~lkp~l~~li~~vifP~l~~~~~-D~ElfedDP~E 146 (161)
+..+..++|++..|+. ++++.|+..++ +.+.|++|+.|
T Consensus 373 ~~~~~~~~~~~~~~~~~l~~l~~-~ll~~~~~p~~~~~~~~~~de~~ 418 (963)
T 2x19_B 373 SFEAEKQAVYQQVYRPVYFQLVD-VLLHKAQFPSDEEYGFWSSDEKE 418 (963)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCHHHHHTSCHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH-HHHHHHcCCCcccccCCChhHHH
Confidence 4567788999999995 66666664332 23455555543
No 6
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.74 E-value=0.0083 Score=49.12 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhH-HHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhc
Q psy3383 28 PWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSA-GILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVG 106 (161)
Q Consensus 28 ~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~-~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~ 106 (161)
+-..+++++++++..+..+|+. .| .++++ .+++.++..+.. ..+.+...+++|+..+++
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~---------~~-----~~~~~~~l~~~~~~~~~~------~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQ---------YM-----ETYMGPALFAITIEAMKS------DIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGG---------GC-----TTTTTTTHHHHHHHHHHC------SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH---------HH-----HHHHHHHHHHHHHHHHcC------CchHHHHHHHHHHHHHHH
Confidence 3468899999999999999865 22 34555 666655554431 267888999999998875
Q ss_pred Cc-------------------hhhhcchhHHHHHHHHhHhccCcCCcchhccccCCh
Q psy3383 107 HG-------------------HCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDP 144 (161)
Q Consensus 107 ~~-------------------~~~~~lkp~l~~li~~vifP~l~~~~~D~ElfedDP 144 (161)
.. ..++.+++++..++. .++.. +++.|++++++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p-~l~~~--l~~~d~d~~~~~~ 342 (462)
T 1ibr_B 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP-ILTQT--LTKQDENDDDDDW 342 (462)
T ss_dssp HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHH-HHHHH--TTCCCSSCCTTCC
T ss_pred HHHHHHHhcccccccCCCccchhHHHHHHHhhhccH-HHHHH--HHhcccccccccc
Confidence 42 344556777766664 34443 4455555565554
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=93.07 E-value=0.078 Score=46.94 Aligned_cols=62 Identities=13% Similarity=0.233 Sum_probs=42.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhH-HHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhh
Q psy3383 27 TPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSA-GILDVLLATLAQYRAGHYISPRVMQQALNYLTQAV 105 (161)
Q Consensus 27 ~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~-~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v 105 (161)
.+-|+++++|+.++.++..+|+. .| .++++ .+++.++..+. . ..+.+...+++|+..++
T Consensus 235 ~~~~~~r~~a~~~l~~l~~~~~~---------~~-----~~~l~~~l~~~~~~~~~---~---~~~~vr~~a~~~l~~l~ 294 (861)
T 2bpt_A 235 AEDIEVQAAAFGCLCKIMSKYYT---------FM-----KPYMEQALYALTIATMK---S---PNDKVASMTVEFWSTIC 294 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGG---------GC-----HHHHHHTHHHHHHHHTT---C---SSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH---------HH-----HHHHHHHHHHHHHHHHc---C---CcHHHHHHHHHHHHHHH
Confidence 34689999999999999999875 23 23334 45444443332 1 25789999999999887
Q ss_pred cCc
Q psy3383 106 GHG 108 (161)
Q Consensus 106 ~~~ 108 (161)
+..
T Consensus 295 ~~~ 297 (861)
T 2bpt_A 295 EEE 297 (861)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=80.97 E-value=2 Score=37.87 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhH-HHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcC
Q psy3383 29 WWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSA-GILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGH 107 (161)
Q Consensus 29 ~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~-~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~ 107 (161)
.+++++.|+.++.++..+|+. .| .++++ .++..+++.+. ...+.+...+++|+..+++.
T Consensus 230 ~~~vr~~a~~~l~~l~~~~~~---------~~-----~~~~~~~l~~~~~~~~~------~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 230 DTRVRVAALQNLVKIMSLYYQ---------YM-----ETYMGPALFAITIEAMK------SDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHSGG---------GC-----HHHHTTTHHHHHHHHHT------CSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHH---------HH-----HHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHHHH
Confidence 357889999999999998875 22 23344 55555554332 12567888889888887653
Q ss_pred c-------------------hhhhcchhHHHHHHHHhHhccCcCCcch
Q psy3383 108 G-------------------HCWARLKPHATAIIQEVLFPFLSYTDAD 136 (161)
Q Consensus 108 ~-------------------~~~~~lkp~l~~li~~vifP~l~~~~~D 136 (161)
. ..+..+++++..++. .++..|+-.++|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~ll~~l~~~~~d 336 (876)
T 1qgr_A 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP-ILTQTLTKQDEN 336 (876)
T ss_dssp HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH-HHHHHTTCCCSS
T ss_pred HHhHhhhhccccccCCCccchhHHHHHHHHHHHhH-HHHHHhhccccc
Confidence 2 234456778877775 566666654443
No 9
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=55.24 E-value=22 Score=27.15 Aligned_cols=84 Identities=7% Similarity=0.161 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhhh--------hHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHh
Q psy3383 34 KWALHILSRIFERYGSPGGV-VSDYEEFARWYLKTF--------SAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQA 104 (161)
Q Consensus 34 Kwa~~il~rl~~Ryg~~~~~-~~~~~~fa~~f~~~~--------~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~ 104 (161)
+.+-.++..++.|+++.+.. .+.-..-...|..+. ++.+++..+..++ ++ ...+-..++.||..+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~---~k---~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK---HK---TPQIRMECTQLFNAS 173 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT---CS---SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc---CC---ChHHHHHHHHHHHHH
Confidence 55566677777777764421 111222233333332 3444444443332 23 346777888899888
Q ss_pred hcCchhh-hcchhHH-HHHHH
Q psy3383 105 VGHGHCW-ARLKPHA-TAIIQ 123 (161)
Q Consensus 105 v~~~~~~-~~lkp~l-~~li~ 123 (161)
+.....- +.+.+++ ..|+.
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip 194 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVP 194 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHH
T ss_pred HHHcCCcchhHHHHHHHHHHH
Confidence 8654321 2344455 44443
No 10
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=51.78 E-value=74 Score=23.93 Aligned_cols=75 Identities=19% Similarity=0.229 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCchh
Q psy3383 31 KCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHC 110 (161)
Q Consensus 31 K~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~ 110 (161)
.++.-|..++..++.|||+.. .+.-|.+++++.+.+..-. .+-...+-|+.=|.. .+....
T Consensus 105 ~LRd~AA~lL~~I~~~~~~~y--------------~~L~~RI~~tl~k~l~dp~----~~l~t~YGAi~GL~~-lG~~~v 165 (196)
T 4atg_A 105 DVRKMSADIVKYIYDTYSRSY--------------KTLAPRVLKTLKGVWMDPN----RSEDSQYGALYCLSI-LSKNVV 165 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTTTS--------------TTHHHHHHHHHHHHHTCTT----SCHHHHHHHHHHHHH-HCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccC--------------chHHHHHHHHHHHHHcCCC----CChHHHHHHHHHHHH-hHHHHH
Confidence 789999999999999999732 3456777787777664321 255677777777774 444444
Q ss_pred hhcchhHHHHHHHH
Q psy3383 111 WARLKPHATAIIQE 124 (161)
Q Consensus 111 ~~~lkp~l~~li~~ 124 (161)
...+-|++..+...
T Consensus 166 r~~llP~l~~~~~~ 179 (196)
T 4atg_A 166 NTVIREHAEEYKRT 179 (196)
T ss_dssp HTHHHHHHHHHHHH
T ss_pred HHhhhcCHHHHHHH
Confidence 44566887776653
No 11
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=47.01 E-value=65 Score=26.21 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhc--CcccCHHHHHHHHHHHHHhhcCchhh-
Q psy3383 35 WALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRA--GHYISPRVMQQALNYLTQAVGHGHCW- 111 (161)
Q Consensus 35 wa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~--~~~~~~~~~~~~l~fL~~~v~~~~~~- 111 (161)
-++.++.-++.+.++ ..+++..|-++|.-.+++.++.++..... |.-..-.++..++.......-....|
T Consensus 186 ~gL~il~~ll~n~~~-------~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~ 258 (321)
T 1w9c_A 186 TGLQILFTLLQNVAQ-------EEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNP 258 (321)
T ss_dssp HHHHHHHHHHHHHHH-------CHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCS
T ss_pred HHHHHHHHHHHHHhc-------ChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHHcCccccccCC
Confidence 345677777777642 12789999999999999999999987543 33223356666666655421111122
Q ss_pred -------hcchhHHHHHHHHhHhccCcCC
Q psy3383 112 -------ARLKPHATAIIQEVLFPFLSYT 133 (161)
Q Consensus 112 -------~~lkp~l~~li~~vifP~l~~~ 133 (161)
..++.++..++. -.||++.-.
T Consensus 259 ~~~~~n~~~v~~~l~~lL~-~~Fp~l~~~ 286 (321)
T 1w9c_A 259 GNPVNNQIFLQEYVANLLK-SAFPHLQDA 286 (321)
T ss_dssp SSCCCHHHHHHHHHHHHHH-HHCTTSCHH
T ss_pred CCCcccHHHHHHHHHHHHH-HhCCCCCHH
Confidence 234556666554 458887643
No 12
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=39.92 E-value=1e+02 Score=25.00 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=62.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHh
Q psy3383 25 ADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQA 104 (161)
Q Consensus 25 ~~~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~ 104 (161)
.+.|..|.-+-+-+-+.||+..|-+.. .+ .+...++++|+++++++.==..... ...-+.+++. ++.+
T Consensus 34 ~k~~~vr~lR~vKkeiLkLiet~i~~~-~d------~~~v~~~~ippLl~~VL~DY~~~vp-~aRepeVL~l----~~ti 101 (321)
T 1w9c_A 34 TKQPLIRSMRTVKRETLKLISGWVSRS-ND------PQMVAENFVPPLLDAVLIDYQRNVP-AAREPEVLST----MAII 101 (321)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHTTC-SC------HHHHHHHTHHHHHHHHHHHHHTSCG-GGCCTHHHHH----HHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHcC-CC------HHHHHHHHHHHHHHHHHHHHHhCCc-ccccHHHHHH----HHHH
Confidence 456666666666666666666665421 11 1335577888888887764433211 2234455544 3443
Q ss_pred hcCchhhhcchhHHHHHHHHhHhccCcCCcchhccccC
Q psy3383 105 VGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSS 142 (161)
Q Consensus 105 v~~~~~~~~lkp~l~~li~~vifP~l~~~~~D~Elfed 142 (161)
++ ..-..+.|.+..|++.+--|.+.+=..|.+.|-|
T Consensus 102 i~--kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPe 137 (321)
T 1w9c_A 102 VN--KLGGHITAEIPQIFDAVFECTLNMINKDFEEYPE 137 (321)
T ss_dssp HH--HHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHH
T ss_pred HH--HHHHHhhhhHHHHHHHHHHHHHHHHhcccccChH
Confidence 32 1225689999999999888888777766665544
No 13
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=37.23 E-value=1e+02 Score=28.30 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q psy3383 31 KCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYR 84 (161)
Q Consensus 31 K~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~ 84 (161)
-..|-+++++..+++..+.++ + .+++..|.++|.+.+++.++..|....
T Consensus 864 ~~~~~~l~~l~~l~~~~~~~~--~---~~~~~~f~~~~~~~l~~~~~~~l~~~~ 912 (1049)
T 3m1i_C 864 DVEVNGLQIALDLVKNIERMG--N---VPFANEFHKNYFFIFVSETFFVLTDSD 912 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC--S---CHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHHHhcC--C---hHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 457888899999998864311 1 267888899999999999999887644
No 14
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=36.96 E-value=1.5e+02 Score=27.61 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=42.9
Q ss_pred HHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHHHHHhHhccCcCCcchhccccCC
Q psy3383 64 YLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSD 143 (161)
Q Consensus 64 f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li~~vifP~l~~~~~D~ElfedD 143 (161)
..++++|++++.++.--..... ....+.+++.+-..+... + ..+.|.+..|++.+.-|.+.+=.. .|+|-
T Consensus 748 ~~~~~~~~l~~~vl~dY~~~~~-~~r~~~vL~l~s~iv~~~-~-----~~~~~~~~~il~~vf~~Tl~mi~~---~~~~~ 817 (1023)
T 4hat_C 748 VVKVLVEPLLNAVLEDYMNNVP-DARDAEVLNCMTTVVEKV-G-----HMIPQGVILILQSVFECTLDMINK---DFTEY 817 (1023)
T ss_dssp HHHHTHHHHHHHHHHHHHHSCG-GGCCHHHHHHHHHHHHHH-G-----GGCHHHHHHHHHHHHHHHHHHHSS---CSSSS
T ss_pred HHHHhHHHHHHHHHHHHHhCCh-hhccHHHHHHHHHHHHHH-H-----HhhhhhhHHHHHHHHHHHHHHHhc---ccccC
Confidence 4567788888887664443211 223444554443333322 1 357899999999998888766554 44444
Q ss_pred hH
Q psy3383 144 PH 145 (161)
Q Consensus 144 P~ 145 (161)
|+
T Consensus 818 Pe 819 (1023)
T 4hat_C 818 PE 819 (1023)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 15
>2gs0_B Cellular tumor antigen P53; TFIIH, TFB1, activation, transcription, PH domain; NMR {Homo sapiens}
Probab=31.67 E-value=7.4 Score=23.46 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=17.0
Q ss_pred cCcCCcchhccccC---ChHHHHH
Q psy3383 129 FLSYTDADEELWSS---DPHEYIR 149 (161)
Q Consensus 129 ~l~~~~~D~Elfed---DP~EYIr 149 (161)
-|+++.+|++.|=+ ||.|+.|
T Consensus 23 dL~l~~eDv~~wl~~~~~pdeA~~ 46 (54)
T 2gs0_B 23 DLMLSPDDIEQWFTEDPGPDEAPR 46 (54)
T ss_pred hhccCHHHHHHHhhcCCCcccccc
Confidence 35679999999955 8998877
No 16
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=29.49 E-value=1.1e+02 Score=28.98 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=58.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhh
Q psy3383 26 DTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAV 105 (161)
Q Consensus 26 ~~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v 105 (161)
+.|..|+-+-+-.-+.|++.+|-+.. .+. +...++++|++++.++.-=..... ....+.+++.+-..+...
T Consensus 743 ~~~~~~~~r~ik~eil~l~~~~i~~~---~~~----~~v~~~~i~pl~~~vl~dY~~~~p-~~r~~evL~l~s~iv~k~- 813 (1073)
T 3gjx_A 743 KQPLIRSMRTVKRETLKLISGWVSRS---NDP----QMVAENFVPPLLDAVLIDYQRNVP-AAREPEVLSTMAIIVNKL- 813 (1073)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTC---SCH----HHHHHHTSHHHHHHTHHHHHHSCG-GGCCTHHHHHHHHHHHHH-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcC---CCH----HHHHHHhHHHHHHHHHHHHhcCCc-ccccHHHHHHHHHHHHHH-
Confidence 34555555555555566666665421 111 234567888888887664443211 223445555444443332
Q ss_pred cCchhhhcchhHHHHHHHHhHhccCcCCcchhccccC
Q psy3383 106 GHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSS 142 (161)
Q Consensus 106 ~~~~~~~~lkp~l~~li~~vifP~l~~~~~D~Elfed 142 (161)
+ ..+.|.+..|++.+.-|.+.+=..|.+.|-|
T Consensus 814 ~-----~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe 845 (1073)
T 3gjx_A 814 G-----GHITAEIPQIFDAVFECTLNMINKDFEEYPE 845 (1073)
T ss_dssp G-----GGTGGGHHHHHHHHHHHHHHHHSSCSSSCHH
T ss_pred H-----hhcchhHHHHHHHHHHHHHHHHhCCcccCcH
Confidence 1 2678999999999888888766654444433
No 17
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.00 E-value=8.9 Score=22.97 Aligned_cols=12 Identities=8% Similarity=0.564 Sum_probs=0.0
Q ss_pred CChHHHHHHhcc
Q psy3383 142 SDPHEYIRVKFG 153 (161)
Q Consensus 142 dDP~EYIr~~~d 153 (161)
+||.|||++.+.
T Consensus 1 ~~AlefIk~~LG 12 (53)
T 2yy0_A 1 NSALDFLKHHLG 12 (53)
T ss_dssp ------------
T ss_pred CcHHHHHHHHcC
Confidence 489999999986
No 18
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=28.80 E-value=1.2e+02 Score=20.75 Aligned_cols=113 Identities=12% Similarity=0.279 Sum_probs=54.2
Q ss_pred CCChhhh--ccchhHHHHHHHHHHHHHHHHHhCCCCC-------CCcc----hHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q psy3383 18 TLDEDER--ADTPWWKCKKWALHILSRIFERYGSPGG-------VVSD----YEEFARWYLKTFSAGILDVLLATLAQYR 84 (161)
Q Consensus 18 ~~d~~~r--~~~~~wK~KKwa~~il~rl~~Ryg~~~~-------~~~~----~~~fa~~f~~~~~~~~l~~~l~ll~~~~ 84 (161)
..+++++ -+..|-++++-...++.|+|..|=+-+. .+.+ ..+| ..+.-.++..+-..+....
T Consensus 6 ~Ls~~~~~~v~~sw~~v~~~~~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~-----~~h~~~v~~~l~~~v~~ld 80 (150)
T 1x46_A 6 DMEAGDIALVKSSWAQIHDKEVDILYNFFKSYPASQAKFSAFAGKDLESLKDTAPF-----ALHATRIVSVINEAIALMG 80 (150)
T ss_dssp CCCHHHHHHHHHHHHTTTTCHHHHHHHHHHHCHHHHTTCTTTTTSCHHHHTTSHHH-----HHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHhhHhccCCCHHHHhhChHH-----HHHHHHHHHHHHHHHHHcc
Confidence 3444444 2344555544448889999998732111 1100 1223 3444455555555554432
Q ss_pred cCcccCHHHHHHHHHHHHH-----hhcCchhhhcchhHHHHHHHHhHhccCcCCcchhcccc
Q psy3383 85 AGHYISPRVMQQALNYLTQ-----AVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWS 141 (161)
Q Consensus 85 ~~~~~~~~~~~~~l~fL~~-----~v~~~~~~~~lkp~l~~li~~vifP~l~~~~~D~Elfe 141 (161)
++. ....+...+.=|.. -| .+..|+.+..++-..+.+ .++ .++++-.+-|.
T Consensus 81 ~~~--~~~~l~~~l~~L~~~H~~~gV-~p~~f~~~~~~Ll~~l~~-~lg--~~t~e~~~AW~ 136 (150)
T 1x46_A 81 VAE--NRPALKNVLKQQGINHKGRGV-TAAHFEEFETALEAFLES-HAS--GYNAGTKKAWD 136 (150)
T ss_dssp CGG--GHHHHHHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHH-HST--TCCHHHHHHHH
T ss_pred CcC--cHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHHH-Hhc--cCCHHHHHHHH
Confidence 200 01222222222221 23 355666666666666654 455 67777666664
No 19
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=25.43 E-value=3.6e+02 Score=24.01 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHH
Q psy3383 35 WALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATL 80 (161)
Q Consensus 35 wa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll 80 (161)
-.++.|...|.++--|.+-+ .+-+|--++..++-|.+...++..|
T Consensus 381 ~lf~~Ll~~F~~~ILpT~~s-r~vQFl~Fy~cs~~~~~~~~Fl~~L 425 (649)
T 3tj1_A 381 GVFNTLTTLFKTHVLPTYYT-RSIQYIMFHVSQQQLELMDSFLVTL 425 (649)
T ss_dssp HHHHHHHHHHHHTTTTSCSC-SSTTHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccC-ccHHHHHHHHHhCCHHHHHHHHHHH
Confidence 46777888888877665533 3567777777776666665555544
No 20
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=25.40 E-value=80 Score=24.84 Aligned_cols=36 Identities=11% Similarity=0.046 Sum_probs=24.9
Q ss_pred hhcCcccCHHHHHHHHHHHHHhhcCchhhhcchhHH
Q psy3383 83 YRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHA 118 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l 118 (161)
.+.|.-+++.-+..+..+-..+++.....+.|..++
T Consensus 100 ~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl 135 (260)
T 2ozb_B 100 TTQGQQLSEEELERLEEACDMALELNASKHRIYEYV 135 (260)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334788899888888888888777666655553333
No 21
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=25.10 E-value=2.5e+02 Score=25.95 Aligned_cols=46 Identities=11% Similarity=0.254 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHhhcC------chhh-hcchhHHHHHHHHhHhccCcCCcch
Q psy3383 90 SPRVMQQALNYLTQAVGH------GHCW-ARLKPHATAIIQEVLFPFLSYTDAD 136 (161)
Q Consensus 90 ~~~~~~~~l~fL~~~v~~------~~~~-~~lkp~l~~li~~vifP~l~~~~~D 136 (161)
++.+...++.|++..+.. ...+ ..++|++..|+. +++-.|.+.+++
T Consensus 345 ~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~-~li~k~~yp~d~ 397 (980)
T 3ibv_A 345 YDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLE-AIIKKMKYDESQ 397 (980)
T ss_dssp SHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHH-HHHHTTSCCTTC
T ss_pred chhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHH-HHHHHccCCCcc
Confidence 567777788888776532 1223 467899999996 566778876654
No 22
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=24.69 E-value=1.1e+02 Score=28.45 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhc--CcccCHHHHHHHHHHHHHhhcCchhh
Q psy3383 34 KWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRA--GHYISPRVMQQALNYLTQAVGHGHCW 111 (161)
Q Consensus 34 Kwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~--~~~~~~~~~~~~l~fL~~~v~~~~~~ 111 (161)
.-++.++.-++.+..+.+ ..+|+..|.++|.-.+++.++.++..... |.-..-.++..++.......-..+.|
T Consensus 867 ~~~l~~~~~ll~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~~~~~~~~~ 941 (1023)
T 4hat_C 867 VNGLQIALDLVKNIERMG-----NVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLY 941 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHC-----SSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHTTCCCSCSS
T ss_pred HHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHcCCcccccC
Confidence 445666666666654311 13799999999999999999999987433 33333455666666555421111122
Q ss_pred ------------hcchhHHHHHHHHhHhccCcCCcchhcc
Q psy3383 112 ------------ARLKPHATAIIQEVLFPFLSYTDADEEL 139 (161)
Q Consensus 112 ------------~~lkp~l~~li~~vifP~l~~~~~D~El 139 (161)
..++.++.+++. -.||++ +++.++.
T Consensus 942 ~~~~~~~~~~n~~~~~~~~~~~l~-~~fp~~--~~~qi~~ 978 (1023)
T 4hat_C 942 QEAEVPQGTSNQVYLSQYLANMLS-NAFPHL--TSEQIAS 978 (1023)
T ss_dssp CTTSSCTTCCHHHHHHHHHHHHHH-HHCTTS--CHHHHHH
T ss_pred CccccCCCCchHHHHHHHHHHHHH-HhCCCC--CHHHHHH
Confidence 234455555543 368888 5555543
No 23
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=24.20 E-value=34 Score=24.57 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=16.9
Q ss_pred chhccccCChHHHHHHhccCc
Q psy3383 135 ADEELWSSDPHEYIRVKFGEL 155 (161)
Q Consensus 135 ~D~ElfedDP~EYIr~~~d~~ 155 (161)
=|+=.|.+||.+||+.-+-+.
T Consensus 69 IdIV~~s~d~~~fI~naLsPA 89 (144)
T 2cxc_A 69 IEVVEYSSDLERIVKNLFPGV 89 (144)
T ss_dssp EEEEECCSSHHHHHHHHSTTS
T ss_pred eEEEEcCCCHHHHHHHhcCCc
Confidence 467789999999999876543
No 24
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=23.91 E-value=32 Score=27.13 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=18.9
Q ss_pred cchhccccCChHHHHHHhccCcC
Q psy3383 134 DADEELWSSDPHEYIRVKFGELG 156 (161)
Q Consensus 134 ~~D~ElfedDP~EYIr~~~d~~~ 156 (161)
.=|+=.|.+||.+||..-+-+.+
T Consensus 150 kIDIi~~s~dp~~fi~nalsPA~ 172 (251)
T 2asb_A 150 KIDIIDYDDDPARFVANALSPAK 172 (251)
T ss_dssp EEEEEECCSSHHHHHHHHTTTSC
T ss_pred eEEEEEecCCHHHHHHhccCCcc
Confidence 34778999999999999886654
No 25
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=23.88 E-value=17 Score=18.71 Aligned_cols=16 Identities=38% Similarity=1.053 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3383 30 WKCKKWALHILSRIFE 45 (161)
Q Consensus 30 wK~KKwa~~il~rl~~ 45 (161)
||||..-.+.+-|+..
T Consensus 8 wkckafkqrvlkrlla 23 (30)
T 2l3i_A 8 WKCKAFKQRVLKRLLA 23 (30)
T ss_dssp SCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 7888877777777654
No 26
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.83 E-value=54 Score=16.61 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhc
Q psy3383 71 GILDVLLATLAQYRA 85 (161)
Q Consensus 71 ~~l~~~l~ll~~~~~ 85 (161)
.|++.++++++++.+
T Consensus 2 nfMkDvlql~qQy~q 16 (26)
T 1kdl_A 2 NFMKDVLRLIEQYVS 16 (26)
T ss_dssp THHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHH
Confidence 467888999998865
No 27
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=23.53 E-value=86 Score=20.62 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=18.1
Q ss_pred HHHHHHhhc-CcccCHHHHHHHHHHHHH
Q psy3383 77 LATLAQYRA-GHYISPRVMQQALNYLTQ 103 (161)
Q Consensus 77 l~ll~~~~~-~~~~~~~~~~~~l~fL~~ 103 (161)
|..|...-+ .-+.++..+-.+++||..
T Consensus 30 W~~L~~~i~I~CF~~~PSikSSLKFLRK 57 (88)
T 2jvw_A 30 WEELSYMVNINCFKKDPSIKSSLKFLRK 57 (88)
T ss_dssp HHHHHHHTTSSSTTSSCCHHHHHHHHHH
T ss_pred HHHHHhhcccccCCCCCchHHHHHHHhc
Confidence 345555443 467788888888888874
No 28
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=22.42 E-value=1.8e+02 Score=19.84 Aligned_cols=99 Identities=10% Similarity=0.257 Sum_probs=53.2
Q ss_pred chhHHH----HHHHHHHHHHHHHHhCCCCCC-------Cc--chHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHH
Q psy3383 27 TPWWKC----KKWALHILSRIFERYGSPGGV-------VS--DYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRV 93 (161)
Q Consensus 27 ~~~wK~----KKwa~~il~rl~~Ryg~~~~~-------~~--~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~ 93 (161)
..|-++ ..-+..++.|+|..|-+-+.. +. ...+| ..+.-.++..+-..+....+ ...
T Consensus 20 ~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~~~~~~~~n~~~-----~~h~~~v~~al~~~v~~ldd-----~~~ 89 (146)
T 3g46_A 20 DSWKVIGSDKKGNGVALMTTLFADNQETIGYFKRLGDVSQGMANDKL-----RGHSITLMYALQNFIDQLDN-----PDD 89 (146)
T ss_dssp HHHHHHGGGHHHHHHHHHHHHHHHCGGGGGGGGGGCCGGGGGGCHHH-----HHHHHHHHHHHHHHHHTTTC-----HHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHCHHHHHHHHHHcCCCCcccCHHH-----HHHHHHHHHHHHHHHHHcCC-----HHH
Confidence 445555 345667888999987542211 00 11222 33444555555555554432 122
Q ss_pred HHHHHHHHH-----HhhcCchhhhcchhHHHHHHHHhHhccCcCCcchhcccc
Q psy3383 94 MQQALNYLT-----QAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWS 141 (161)
Q Consensus 94 ~~~~l~fL~-----~~v~~~~~~~~lkp~l~~li~~vifP~l~~~~~D~Elfe 141 (161)
+.-.+.-|. .-| .+..|+.+...+-..+... .++++-.+-|.
T Consensus 90 l~~~l~~l~~~H~~~~V-~p~~f~~~~~~ll~~l~~~-----~~t~e~~~AW~ 136 (146)
T 3g46_A 90 LVCVVEKFAVNHITRKI-SAAEFGKINGPIKKVLASK-----NFGDKYANAWA 136 (146)
T ss_dssp HHHHHHHHHHHHHHTTC-CHHHHGGGHHHHHHHHHHT-----TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHH
Confidence 333333332 244 4667778877777777665 67887777664
No 29
>1ash_A Hemoglobin (OXY); oxygen storage; HET: HEM; 2.15A {Ascaris suum} SCOP: a.1.1.2
Probab=20.58 E-value=1.5e+02 Score=21.07 Aligned_cols=98 Identities=11% Similarity=0.123 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCc-----------chHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHH
Q psy3383 35 WALHILSRIFERYGSPGGVVS-----------DYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQ 103 (161)
Q Consensus 35 wa~~il~rl~~Ryg~~~~~~~-----------~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~ 103 (161)
=+..+..+||++|-+.+..=+ ....| ......++.++...+.......-+..-+-..+-+-...
T Consensus 26 ~g~~fy~~LF~~~Pe~r~~F~~~~~~~~~d~~~s~~f-----~~q~~rl~~aL~~~i~~lDd~~~L~~~l~~L~~~H~~~ 100 (150)
T 1ash_A 26 DGIDLYKHMFENYPPLRKYFKSREEYTAEDVQNDPFF-----AKQGQKILLACHVLCATYDDRETFNAYTRELLDRHARD 100 (150)
T ss_dssp HHHHHHHHHHHHCGGGGGGSTTTTTCCHHHHHHCHHH-----HHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHChhHHHHhhhcccCChhhhhcCHHH-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 455677889999876332210 11122 23444555555555555443111222222233333333
Q ss_pred hh-cCchhhhcchhHHHHHHHHhHhccCcCCcchhcccc
Q psy3383 104 AV-GHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWS 141 (161)
Q Consensus 104 ~v-~~~~~~~~lkp~l~~li~~vifP~l~~~~~D~Elfe 141 (161)
-+ -.+..|..+...+...+.+++ .++++..+-|.
T Consensus 101 g~gV~~e~f~~v~~~Ll~~L~~~l----~~t~~~~~AW~ 135 (150)
T 1ash_A 101 HVHMPPEVWTDFWKLFEEYLGKKT----TLDEPTKQAWH 135 (150)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHS----CCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHc----CCCHHHHHHHH
Confidence 31 245677777777777777664 57888888775
No 30
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=20.52 E-value=1.6e+02 Score=22.07 Aligned_cols=74 Identities=5% Similarity=0.149 Sum_probs=43.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhh-HHHHHHHHHHHHHhhcCcccCHHHHHH---HHHHHH
Q psy3383 27 TPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFS-AGILDVLLATLAQYRAGHYISPRVMQQ---ALNYLT 102 (161)
Q Consensus 27 ~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~-~~~l~~~l~ll~~~~~~~~~~~~~~~~---~l~fL~ 102 (161)
++-|++|.-++..+.+++...+.+ ...| .+++ +.++....+.+... ...+-.. ++.-+.
T Consensus 157 ~k~~~vk~~al~~l~~~~~~~~~~------~~~l-----~~~l~~~iip~l~~~l~D~------~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 157 HKTPQIRMECTQLFNASMKEEKDG------YSTL-----QRYLKDEVVPIVIQIVNDT------QPAIRTIGFESFAILI 219 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCCSC------SHHH-----HHHHTTTHHHHHHHHHTCS------SHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCc------chhH-----HHHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHH
Confidence 445799999999999999997752 1245 3455 55555555555321 2223333 344444
Q ss_pred HhhcCchhhhcchhHHHHH
Q psy3383 103 QAVGHGHCWARLKPHATAI 121 (161)
Q Consensus 103 ~~v~~~~~~~~lkp~l~~l 121 (161)
.+++. +.+.|+++.|
T Consensus 220 ~~vG~----~~~~p~l~~L 234 (249)
T 2qk1_A 220 KIFGM----NTFVKTLEHL 234 (249)
T ss_dssp HHHCS----GGGHHHHHHS
T ss_pred HHhCH----HHHHHHHHHH
Confidence 45543 4577776654
No 31
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=20.15 E-value=2.5e+02 Score=20.27 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHhhcCchhhhcchhHHHHHHH
Q psy3383 90 SPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQ 123 (161)
Q Consensus 90 ~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li~ 123 (161)
+.++-..++.+|..++..-..-....+++..++.
T Consensus 146 ~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p 179 (242)
T 2qk2_A 146 NPSVKSETALFIARALTRTQPTALNKKLLKLLTT 179 (242)
T ss_dssp CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Confidence 4567777888888866442111244566666554
Done!