RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3383
(161 letters)
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import
[Posttranslational modification, protein turnover,
chaperones].
Length = 970
Score = 104 bits (260), Expect = 1e-26
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 3 IFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFAR 62
+ ++ ++P+P L+LD + R+ + W KCKKWA + L R F+RY S Y F
Sbjct: 229 LSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKS-YLSFYI 287
Query: 63 WYLKTFSAGILDVLLATLAQYRAGH-YISPRVMQQALNYLTQAVGHGHCWARLKPHATAI 121
++ T IL + ++ G ++S + ++ V W ++PH I
Sbjct: 288 TFM-TRVPMILATFFKQIEEWGQGQLWLSDIELYFIDFFVELCVDADQTWRLMEPHLQYI 346
Query: 122 IQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
I V+FP L ++ +EEL+ +DP EYIR +
Sbjct: 347 ISGVIFPLLCLSEEEEELFENDPDEYIRRYY 377
>gnl|CDD|219873 pfam08506, Cse1, Cse1. This domain is present in Cse1 nuclear
export receptor proteins. Cse1 mediates the nuclear
export of importin alpha. This domain contains HEAT
repeats.
Length = 370
Score = 40.0 bits (94), Expect = 2e-04
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 40/161 (24%)
Query: 1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFER---YGSPGGVVSDY 57
M IF + P L D+DE A + + I E Y Y
Sbjct: 84 MGIFHKYLTYDNP--LLETDDDEEAGVL--------EKLKASICENLQLY------TQRY 127
Query: 58 EEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPH 117
EE YL F + ++L++T Q + +S +AL++LT +V AR +
Sbjct: 128 EEEFGPYLNEFVTAVWNLLVSTSPQPKYDILVS-----KALSFLT-SV------ARRPHY 175
Query: 118 A---------TAIIQEVLFPFLSYTDADEELWSSDPHEYIR 149
A I ++V+ P ++ ++DEEL+ DP EYIR
Sbjct: 176 AELFNNESVLKQICEKVVLPNVTLRESDEELFEDDPIEYIR 216
>gnl|CDD|220520 pfam10011, DUF2254, Predicted membrane protein (DUF2254). Members
of this family of bacterial proteins comprises various
hypothetical and putative membrane proteins. Their exact
function, has not, as yet, been defined.
Length = 369
Score = 31.0 bits (71), Expect = 0.21
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 36 ALHILSRIF---ERYGSPGGVVSDYEEFARWYLKTFS-AGILDVLLATLAQYRAGHYISP 91
+ L R+ P ++D + R + +LD A + +Y AG
Sbjct: 300 VIDRLGRLLARLAERKLPPDYLTDDDGRPRVVVPPLDFEDLLDDAFAQIRRYGAGDPEVL 359
Query: 92 RVMQQALNYL 101
+ +AL L
Sbjct: 360 LRLLKALAAL 369
>gnl|CDD|239628 cd03572, ENTH_epsin_related, ENTH domain, Epsin Related family;
composed of hypothetical proteins containing an
ENTH-like domain. The epsin N-terminal homology (ENTH)
domain is an evolutionarily conserved protein module
found primarily in proteins that participate in
clathrin-mediated endocytosis. A set of proteins
previously designated as harboring an ENTH domain in
fact contains a highly similar, yet unique module
referred to as an AP180 N-terminal homology (ANTH)
domain. ENTH and ANTH (E/ANTH) domains are structurally
similar to the VHS domain and are composed of a
superhelix of eight alpha helices. E/ANTH domains bind
both inositol phospholipids and proteins and contribute
to the nucleation and formation of clathrin coats on
membranes. ENTH domains also function in the development
of membrane curvature through lipid remodeling during
the formation of clathrin-coated vesicles.
E/ANTH-bearing proteins have recently been shown to
function with adaptor protein-1 and GGA adaptors at the
trans-Golgi network, which suggests that E/ANTH domains
are universal components of the machinery for
clathrin-mediated membrane budding.
Length = 122
Score = 30.0 bits (68), Expect = 0.26
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 57 YEEFARWYLKTFSA--GILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWAR- 113
YEE A+ K+ + +L+ LL L SP V + L + G+ +
Sbjct: 22 YEEIAKLTRKSVGSCQELLEYLLKRL------KRSSPHVKLKVLKIIKHLCEKGNSDFKR 75
Query: 114 -LKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGPA 158
L+ ++ A I+E +Y + L +E +R + EL A
Sbjct: 76 ELQRNS-AQIRE----CANYKGPPDPLKGDSLNEKVREEAQELIKA 116
>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function
prediction only].
Length = 292
Score = 30.8 bits (69), Expect = 0.30
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 11/80 (13%)
Query: 35 WALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYIS---- 90
A++ L + V D ++ Y K G D AQ G
Sbjct: 149 LAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPD------AQLLLGRMYEKGLG 202
Query: 91 -PRVMQQALNYLTQAVGHGH 109
PR +++A + +A G
Sbjct: 203 VPRDLKKAFRWYKKAAEQGD 222
>gnl|CDD|225123 COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC
component [Carbohydrate transport and metabolism].
Length = 472
Score = 29.2 bits (66), Expect = 0.85
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 68 FSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQE--- 124
FSAGI+ ++LA LA Y G + + + L +A+ H A L P +I E
Sbjct: 134 FSAGIIGMILAILAFYAIGPVVE--TLSKFLAAGVEALVH----AGLLP-LASIFVEPAK 186
Query: 125 VLF 127
VLF
Sbjct: 187 VLF 189
>gnl|CDD|191120 pfam04884, DUF647, Protein of unknown function (DUF647). In
plants, this domain plays a role in auxin-transport,
plant growth and development.
Length = 251
Score = 28.4 bits (64), Expect = 1.4
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 38 HILSRIFERYGSPGGVVSDYEEFARW-YLKTFSAGILDVL 76
L +F G P V DY + W L+ FS+ I VL
Sbjct: 16 SSLLNVFLPEGYPDSVTEDYLPYQLWDSLQAFSSSISGVL 55
>gnl|CDD|226775 COG4325, COG4325, Predicted membrane protein [Function unknown].
Length = 464
Score = 28.7 bits (64), Expect = 1.6
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 37 LHILSRIFERYGS---PGGVVSDYEEFARWYLKTFS-AGILDVLLATLAQYRAGHYISPR 92
+H LS +F P +D R++L S A L V A + +Y A +
Sbjct: 337 VHHLSAVFSVLVQRAEPSPYRADRAGELRFWLPYPSFATYLHVAFAQIRRYGAREPLVLT 396
Query: 93 VMQQALNYLTQAVGHGHCWARLKPHATAIIQ 123
+ Q L + A ++ A +++
Sbjct: 397 ALLQLLAAIATNCVDPSRRAAVRTQAALVLR 427
>gnl|CDD|235198 PRK04011, PRK04011, peptide chain release factor 1; Provisional.
Length = 411
Score = 28.3 bits (64), Expect = 1.9
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 13/82 (15%)
Query: 5 RQVAERPVPEHTLTLDEDERADTPWWKCKKW-----------ALHILSRIFERYGSPGGV 53
R + P + R + P C K + LS + E+ G+ V
Sbjct: 326 RVTYKCPNCGYEEEKTVKRREELPEKTCPKCGSELEIVEEEDIIEELSELAEQSGTKVEV 385
Query: 54 VSDYEEFARWYLKTFS--AGIL 73
+S E LK F A IL
Sbjct: 386 ISTDTEEGEQLLKAFGGIAAIL 407
>gnl|CDD|183144 PRK11460, PRK11460, putative hydrolase; Provisional.
Length = 232
Score = 28.1 bits (63), Expect = 2.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 86 GHYISPRVMQQALNYLTQAV 105
GH I PR+MQ AL+ L V
Sbjct: 190 GHAIDPRLMQFALDRLRYTV 209
>gnl|CDD|119350 cd02871, GH18_chitinase_D-like, GH18 domain of Chitinase D (ChiD).
ChiD, a chitinase found in Bacillus circulans,
hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine
in chitin and chitodextrins. The domain architecture of
ChiD includes a catalytic glycosyl hydrolase family 18
(GH18) domain, a chitin-binding domain, and a
fibronectin type III domain. The chitin-binding and
fibronectin type III domains are located either
N-terminal or C-terminal to the catalytic domain. This
family includes exochitinase Chi36 from Bacillus cereus.
Length = 312
Score = 28.1 bits (63), Expect = 2.2
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 85 AGHYISPRVMQQALNYLTQAVGHG 108
G Y+SP + +AL+ L + G
Sbjct: 253 GGGYVSPSEVIKALDCLMKGTNCG 276
>gnl|CDD|227944 COG5657, CSE1, CAS/CSE protein involved in chromosome segregation
[Cell division and chromosome partitioning].
Length = 947
Score = 27.9 bits (62), Expect = 3.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 119 TAIIQEVLFPFLSYTDADEELWSSDPHEYIR 149
++ ++ P L + D E W DP EYIR
Sbjct: 335 NNLVDLLILPNLILREEDLEEWEDDPLEYIR 365
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 26.4 bits (59), Expect = 6.9
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 17/58 (29%)
Query: 76 LLATLAQYRAGHY---ISPRV----------MQQALNYLTQAVGHGHCWARLKPHATA 120
L A +A RAG ++P + ++ +L + +G WARL PHA
Sbjct: 20 LAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFL-ERLG---LWARLAPHAAP 73
>gnl|CDD|234608 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 26.7 bits (60), Expect = 7.0
Identities = 21/73 (28%), Positives = 24/73 (32%), Gaps = 20/73 (27%)
Query: 64 YLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQ 123
LK LDV LA+ A + L YL RL P A Q
Sbjct: 164 LLKQADYAWLDVWDEQLAELGA------AIAAARLEYL----------ERLAPLAAKTHQ 207
Query: 124 EVLFPF----LSY 132
E+ F LSY
Sbjct: 208 EISPEFELASLSY 220
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.450
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,771,935
Number of extensions: 818998
Number of successful extensions: 779
Number of sequences better than 10.0: 1
Number of HSP's gapped: 778
Number of HSP's successfully gapped: 29
Length of query: 161
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 72
Effective length of database: 6,990,096
Effective search space: 503286912
Effective search space used: 503286912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (24.8 bits)