RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3383
(161 letters)
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 85.0 bits (209), Expect = 5e-20
Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 19/156 (12%)
Query: 1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
M IF + P L ++ + K K ++ RY +
Sbjct: 233 MGIFHKYLSYSNP--LLEDPDETEHASVLIKVKSSIQELVQLYTTRYE----------DV 280
Query: 61 ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWA--RLKPHA 118
+ F ++L + Q + +S ++L++LT + +
Sbjct: 281 FGPMINEFIQITWNLLTSISNQPKYDILVS-----KSLSFLTAVTRIPKYFEIFNNESAM 335
Query: 119 TAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGE 154
I ++++ P ++ + D EL+ DP EYIR
Sbjct: 336 NNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG 371
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.010
Identities = 45/213 (21%), Positives = 68/213 (31%), Gaps = 69/213 (32%)
Query: 15 HTLTLDEDERADTPWWKCKKW------ALHILSRIFERYGSP------------------ 50
H L + DT K K+ A + R F++ +
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 51 G-GVVSDY-EEFARWY---------LKTFSAGILDVLLATLAQ----YRAG--------- 86
G G DY EE Y L FSA L L+ T + G
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 87 -------HY-----IS-PRV-MQQALNYLTQAVGHGHCWARLKPH---ATAIIQEVLFP- 128
Y IS P + + Q +Y+ A G L+ + AT Q ++
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 129 FLSYTDADEELWSSDPHEYIRVKFGELGPARVH 161
++ TD+ E + S + I V F +G R +
Sbjct: 282 AIAETDSWESFFVSV-RKAITVLFF-IG-VRCY 311
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown
function, SEL1-like repeats; 1.68A {Escherichia coli}
Length = 490
Score = 29.5 bits (67), Expect = 0.40
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 36 ALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYIS----P 91
+ L+ +++ G+ GV + E+ WY K+ G AQ G
Sbjct: 293 GQYYLAHLYD-KGA-EGVAKNREQAISWYTKSAEQGDAT------AQANLGAIYFRLGSE 344
Query: 92 RVMQQALNYLTQAVGHGHCWARLK 115
++A+ + +A G A+
Sbjct: 345 EEHKKAVEWFRKAAAKGEKAAQFN 368
Score = 27.2 bits (61), Expect = 2.5
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 52 GVVSDYEEFARWYLKTFSAGILD--VLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGH 109
D + W+ + G +L Y G + P+ QA+ + +A G
Sbjct: 54 ETTKDLTQAMDWFRRAAEQGYTPAEYVLGLR--YMNGEGV-PQDYAQAVIWYKKAALKGL 110
Query: 110 CWA 112
A
Sbjct: 111 PQA 113
Score = 26.5 bits (59), Expect = 4.1
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 14/85 (16%)
Query: 33 KKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGH-YIS- 90
KK L ++ + + + + +G AQ G+ Y
Sbjct: 2 KKSLLAVM---LTGLFALVSLPALGNVNLEQLKQKAESGEAK------AQLELGYRYFQG 52
Query: 91 ---PRVMQQALNYLTQAVGHGHCWA 112
+ + QA+++ +A G+ A
Sbjct: 53 NETTKDLTQAMDWFRRAAEQGYTPA 77
Score = 26.5 bits (59), Expect = 5.3
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 52 GVVSDYEEFARWYLKTFSAGILD--VLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGH 109
GV DY + + ++ G L + G + +AL + ++ G+
Sbjct: 234 GVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI--LEQGLAG-AKEPLKALEWYRKSAEQGN 290
Query: 110 CWA 112
Sbjct: 291 SDG 293
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Length = 140
Score = 28.8 bits (64), Expect = 0.42
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 16/104 (15%)
Query: 57 YEEFARW---YLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGH--CW 111
EE + + +L L SP V Q+AL + AVG
Sbjct: 32 LEEICDLLRSSHVSIVKEFSEFILKRLDNK------SPIVKQKALRLIKYAVGKSGSEFR 85
Query: 112 ARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGEL 155
++ ++ A+ Y + L ++ +R E
Sbjct: 86 REMQRNSVAVRN-----LFHYKGHPDPLKGDALNKAVRETAHET 124
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt
pseudomonas, protein binding; 2.50A {Pseudomonas
fluorescens}
Length = 452
Score = 28.9 bits (65), Expect = 0.83
Identities = 6/62 (9%), Positives = 16/62 (25%), Gaps = 1/62 (1%)
Query: 51 GGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHC 110
+ ++ Y + + A + +A + L +A +G
Sbjct: 48 TRDPAQIKQAEATY-RAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG 106
Query: 111 WA 112
Sbjct: 107 NT 108
Score = 27.8 bits (62), Expect = 1.6
Identities = 13/64 (20%), Positives = 21/64 (32%)
Query: 51 GGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHC 110
G +++ E K F+ G + L+ Y + P V Q QA G+
Sbjct: 84 GATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEA 143
Query: 111 WARL 114
Sbjct: 144 GLAQ 147
Score = 27.0 bits (60), Expect = 3.2
Identities = 6/62 (9%), Positives = 14/62 (22%)
Query: 51 GGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHC 110
E + S G + G ++ L + + G+
Sbjct: 189 KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYP 248
Query: 111 WA 112
+
Sbjct: 249 AS 250
Score = 26.6 bits (59), Expect = 4.3
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 6/64 (9%)
Query: 51 GGVVSDYEEFARWYLKTFSAGILD--VLLATLAQYRAGHYISPRVMQQALNYLTQAVGHG 108
G + + K V LAT+ Y+ P + L + V G
Sbjct: 154 QGTYDQHLDDVERICKAALNTTDICYVELATV--YQKKQ--QPEQQAELLKQMEAGVSRG 209
Query: 109 HCWA 112
A
Sbjct: 210 TVTA 213
Score = 26.2 bits (58), Expect = 6.0
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 51 GGVVSDYEEFARWYLKTFSAGILD--VLLATLAQYRAGHYISPRVMQQALNYLTQAVGHG 108
+ D E+ ++ +A +LL L Y G ++ P + A + +AVG
Sbjct: 261 FPELGDVEQMMKYLDNGRAADQPRAELLLGKL--YYEGKWV-PADAKAAEAHFEKAVGRE 317
Query: 109 H 109
Sbjct: 318 V 318
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix,
right handed super helix, modular structure', hydrolase;
1.95A {Helicobacter pylori} SCOP: a.118.18.1
Length = 138
Score = 27.1 bits (61), Expect = 1.9
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 7/61 (11%)
Query: 52 GVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCW 111
V D ++ ++Y+K + Q+ YL++A
Sbjct: 6 TVKKDLKKAIQYYVKACELNEMF------GCLSLVSNS-QINKQKLFQYLSKACELNSGN 58
Query: 112 A 112
Sbjct: 59 G 59
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor,
irreversible PROT inhibitor, conformational change, blood
plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Length = 1451
Score = 27.4 bits (59), Expect = 2.4
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 57 YEEFARWYLKTFSAGILDVLLA-TLAQYRAGHYISPRVMQQALNYLTQ 103
Y F Y + L + T AQ RA +I + QAL +L+Q
Sbjct: 1002 YSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQ 1049
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 5.5
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 18/39 (46%)
Query: 95 QQALNYLTQAVGHGHCWARLKPHA--TAIIQEVLFPFLS 131
+QAL L A LK +A +A P L+
Sbjct: 19 KQALKKLQ---------ASLKLYADDSA-------PALA 41
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural
genomics, joint center FO structural genomics, JCSG;
HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Length = 212
Score = 25.7 bits (57), Expect = 6.8
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 12/68 (17%)
Query: 52 GVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGH-YIS------PRVMQQALNYLTQA 104
D + + ++ + S A+Y AG + Q+AL++L +
Sbjct: 140 HGPEDDVKASEYFKGSSSLSRTG-----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194
Query: 105 VGHGHCWA 112
G
Sbjct: 195 CLEGFDTG 202
Score = 25.3 bits (56), Expect = 9.5
Identities = 8/64 (12%), Positives = 16/64 (25%), Gaps = 11/64 (17%)
Query: 51 GGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGH-YIS----PRVMQQALNYLTQAV 105
+DY + + K AG + ++ + A+ L A
Sbjct: 63 NPQQADYPQARQLAEKAVEAGSKS------GEIVLARVLVNRQAGATDVAHAITLLQDAA 116
Query: 106 GHGH 109
Sbjct: 117 RDSE 120
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 25.2 bits (56), Expect = 9.8
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 52 GVVSDYEEFARWYLKTFSAGILD--VLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGH 109
GV + ++ A +Y K + LL L Y +G + + +AL Y ++A +
Sbjct: 53 GVEKNLKKAASFYAKACDLNYSNGCHLLGNL--YYSGQGV-SQNTNKALQYYSKACDLKY 109
Query: 110 CWA 112
Sbjct: 110 AEG 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.450
Gapped
Lambda K H
0.267 0.0386 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,755,428
Number of extensions: 162512
Number of successful extensions: 395
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 34
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.1 bits)