RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3383
         (161 letters)



>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 959

 Score = 78.4 bits (192), Expect = 3e-18
 Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 19/151 (12%)

Query: 1   MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
           M IF +      P   L   ++    +   K K     ++     RY          E+ 
Sbjct: 233 MGIFHKYLSYSNPL--LEDPDETEHASVLIKVKSSIQELVQLYTTRY----------EDV 280

Query: 61  ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLK--PHA 118
               +  F     ++L +   Q +        ++ ++L++LT        +         
Sbjct: 281 FGPMINEFIQITWNLLTSISNQPK-----YDILVSKSLSFLTAVTRIPKYFEIFNNESAM 335

Query: 119 TAIIQEVLFPFLSYTDADEELWSSDPHEYIR 149
             I ++++ P ++  + D EL+  DP EYIR
Sbjct: 336 NNITEQIILPNVTLREEDVELFEDDPIEYIR 366


>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus),
          cardiac isoform [TaxId: 9031]}
          Length = 81

 Score = 28.8 bits (64), Expect = 0.089
 Identities = 6/46 (13%), Positives = 14/46 (30%)

Query: 18 TLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARW 63
           +D +E         +      +  + +          DY+EF  +
Sbjct: 31 YIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEF 76


>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
           9031]}
          Length = 162

 Score = 26.1 bits (56), Expect = 1.7
 Identities = 5/52 (9%), Positives = 15/52 (28%)

Query: 13  PEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWY 64
                 +D +E  +      +      +  + +          D++EF +  
Sbjct: 107 KNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 158


>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale
          cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 67

 Score = 24.1 bits (52), Expect = 2.9
 Identities = 9/49 (18%), Positives = 15/49 (30%)

Query: 18 TLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLK 66
           L  DE  +        +    + + FE     G    + +EF     K
Sbjct: 17 KLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK 65


>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 99

 Score = 23.5 bits (50), Expect = 8.0
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 2  EIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFA 61
           ++ +   +    +T  +   +     + K       IL +I++   + G  V   +EF 
Sbjct: 11 PVYEKYYRQVEAGNTGRVLALD--AAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFF 68


>d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens
           [TaxId: 294]}
          Length = 218

 Score = 24.2 bits (51), Expect = 9.4
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 79  TLAQYRAGHYISPRVMQQALNYLTQAVG 106
           T  +Y  GH + P+ +     +L   +G
Sbjct: 191 TWQEYPMGHEVLPQEIHDIGAWLAARLG 218


>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine
           phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus
           thermophilus [TaxId: 274]}
          Length = 258

 Score = 24.0 bits (51), Expect = 9.6
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 71  GILDVLLATLAQYRAGHYISPRVMQQALNYLTQA------VGHGH 109
           G    L A +A   A        + +A  YLT+A      +GHGH
Sbjct: 207 GTGCTLSAAIAALLAKGRPLAEAVAEAKAYLTRALKTAPSLGHGH 251


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.450 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 684,276
Number of extensions: 31226
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 12
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.7 bits)