BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3385
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95373|IPO7_HUMAN Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1
Length = 1038
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 43/56 (76%)
Query: 44 VISREVFAQWMEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFER 99
+I+++ +W+EI + V R VP TL ++ED+R + PWWKCKKWALHIL+R+FER
Sbjct: 219 LINQQNLTEWIEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFER 274
>sp|Q9EPL8|IPO7_MOUSE Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2
Length = 1038
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 43/56 (76%)
Query: 44 VISREVFAQWMEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFER 99
+I+++ +W+EI + V R VP TL ++ED+R + PWWKCKKWALHIL+R+FER
Sbjct: 219 LINQQNLTEWVEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFER 274
>sp|Q7TMY7|IPO8_MOUSE Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=3
Length = 1010
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 44 VISREVFAQWMEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFER 99
+++ + WMEIFR + +R VP TL +DED+R + WWKCKKWALHI++R+FER
Sbjct: 220 LVNHQTMTTWMEIFRTIIDRTVPPETLQIDEDDRPELVWWKCKKWALHIVARLFER 275
>sp|O15397|IPO8_HUMAN Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2
Length = 1037
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 44 VISREVFAQWMEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFER 99
+++ + WMEIFR + +R VP TL +DED+R + WWKCKKWALHI++R+FER
Sbjct: 220 LVNNQTMTTWMEIFRTIIDRTVPPETLHIDEDDRPELVWWKCKKWALHIVARLFER 275
>sp|P46970|NMD5_YEAST Nonsense-mediated mRNA decay protein 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NMD5 PE=1 SV=2
Length = 1048
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 48 EVFAQWMEIFRQVAERPVPEHTLTLDEDE-RADTPWWKCKKWALHILSRIFER 99
E F W F + ++P+P+ L + + E R+ PW KCKKWAL L R+F+R
Sbjct: 235 ESFTPWACFFVSIIQQPLPQEVLAISDIEVRSKNPWVKCKKWALANLYRLFQR 287
>sp|O59809|IMA3_SCHPO Probable importin c550.11 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPCC550.11 PE=3 SV=1
Length = 1029
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 44 VISREVFAQWMEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFER 99
+++ ++ W+++ V ++P+PE ++L+ + R W KCKKWA + L+RIF R
Sbjct: 215 LLANDMILSWIQLLLAVVQKPLPESLMSLEPEVRQSHVWHKCKKWAYYSLNRIFTR 270
>sp|Q55CX9|IPO7_DICDI Probable importin-7 homolog OS=Dictyostelium discoideum
GN=DDB_G0269860 PE=3 SV=1
Length = 1065
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 39 YTVHW-----VISREVFAQWMEIFRQVAERPV-PEHTLTLDEDERADTPWWKCKKWALHI 92
Y +H+ +I EVF +W+ F ++ +RP+ P+ + +D R + WW K+ +
Sbjct: 208 YAIHFEIPDLLIQPEVFNKWLSQFVRIIQRPITPQENVKHADDCRKNQ-WWLLKRTTAKL 266
Query: 93 LSRIFER 99
L+ +F +
Sbjct: 267 LNLLFRK 273
>sp|P22168|RDRP_FXMV RNA replication protein OS=Foxtail mosaic virus PE=3 SV=1
Length = 1335
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 58 RQVAERPVPEHTLTLDEDERADTPW--WKCKKWAL 90
R++ +P PE TL +E +R D PW W+ + AL
Sbjct: 469 REIEHQPAPEITLDEEEPQRDDLPWDAWRTQLRAL 503
>sp|Q2R0L2|LAC19_ORYSJ Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC19 PE=2 SV=1
Length = 590
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 40 TVHWVISREVFAQWMEIFRQVAERPVP---EHTLTLDEDERADTPWW 83
T+HW R++ + W + V E P+P EHT + + T WW
Sbjct: 84 TIHWHGVRQMRSCWADGAGFVTECPIPPGNEHTYRFNVTGQVGTLWW 130
>sp|A2Y9C5|LAC19_ORYSI Putative laccase-19 OS=Oryza sativa subsp. indica GN=LAC19 PE=3
SV=1
Length = 590
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 40 TVHWVISREVFAQWMEIFRQVAERPVP---EHTLTLDEDERADTPWW 83
T+HW R++ + W + V E P+P EHT + + T WW
Sbjct: 84 TIHWHGVRQMRSCWADGAGFVTECPIPPGNEHTYRFNVTGQVGTLWW 130
>sp|Q6ZPY7|KDM3B_MOUSE Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2
Length = 1562
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 32 DLIITEVYTVHWVISREVFAQWMEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALH 91
D+ T ++ +HWV + F ++ +R RP E DE+ + W KC K H
Sbjct: 833 DVCETTLFNIHWVCRKCGFGVCLDCYRLRKSRPRSETEEMGDEEVFS---WLKCAKGQSH 889
>sp|Q7LBC6|KDM3B_HUMAN Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2
Length = 1761
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 32 DLIITEVYTVHWVISREVFAQWMEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALH 91
D+ T ++ +HWV + F ++ +R RP E DE+ + W KC K H
Sbjct: 1032 DVCETTLFNIHWVCRKCGFGVCLDCYRLRKSRPRSETEEMGDEEVFS---WLKCAKGQSH 1088
>sp|Q3U827|RN180_MOUSE E3 ubiquitin-protein ligase RNF180 OS=Mus musculus GN=Rnf180 PE=1
SV=2
Length = 592
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 29 FDYDLIITEVYTVHWVISREVF 50
FD D++I +Y+V+WVI VF
Sbjct: 561 FDMDMVIIYIYSVNWVIGFVVF 582
>sp|Q04175|SXM1_YEAST Importin beta SMX1 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=SXM1 PE=1 SV=1
Length = 944
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 48 EVFAQWMEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFER 99
E W+++ + +P+P + LD +R+ K KW L+R +R
Sbjct: 218 ERIMSWVQLHLYLCSKPLPVEVMELDPADRSLDKRVKVNKWGFGNLNRFLQR 269
>sp|Q6IRB8|KD3AA_XENLA Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-a PE=2
SV=1
Length = 1331
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 36 TEVYTVHWVISREVFAQWMEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALH 91
T ++ +HWV + F ++ +R + + +L+ ED W KC K LH
Sbjct: 688 TTIFNLHWVCPKCGFGVCVDCYR------MKKKSLSSGEDGNETFSWLKCVKGQLH 737
>sp|Q92QR8|CTAA_RHIME Heme A synthase OS=Rhizobium meliloti (strain 1021) GN=ctaA PE=3
SV=1
Length = 367
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 13 VMFVLIAFVLIR-VQRAFDYDLIITEVYTVHWVISREVFAQWMEIFRQVAERPVPEH-TL 70
V+F L A VL+ R + L ITE VH VI +W E FR P E
Sbjct: 33 VLFALFALVLVGGATRLTESGLSITEWKPVHGVIPPLSAEEWEEEFRLYQRIPQYEQINK 92
Query: 71 TLDEDERADTPWWKCKKWALHILSR 95
+ DE WW +WA +L+R
Sbjct: 93 GMTVDEFKTIFWW---EWAHRLLAR 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.139 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,656,404
Number of Sequences: 539616
Number of extensions: 1146450
Number of successful extensions: 3057
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3047
Number of HSP's gapped (non-prelim): 35
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)