Query psy3385
Match_columns 99
No_of_seqs 109 out of 177
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 23:40:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1991|consensus 99.9 1.2E-23 2.7E-28 187.1 4.5 66 34-99 208-273 (1010)
2 COG5656 SXM1 Importin, protein 99.7 8.7E-19 1.9E-23 154.6 3.3 65 35-99 208-272 (970)
3 PF08506 Cse1: Cse1; InterPro 98.7 4.2E-09 9E-14 85.8 1.2 60 35-99 67-126 (370)
4 PF07389 DUF1500: Protein of u 22.0 48 0.001 23.4 1.0 11 89-99 35-45 (100)
5 COG4304 Uncharacterized protei 19.1 72 0.0016 24.3 1.5 15 85-99 84-98 (166)
6 PHA02602 56 dCTP pyrophosphata 18.5 54 0.0012 25.2 0.7 66 21-86 34-108 (172)
7 PF08041 PetM: PetM family of 17.7 94 0.002 17.7 1.4 10 18-27 20-29 (31)
8 KOG0564|consensus 16.7 1.4E+02 0.003 27.0 2.9 38 30-72 181-219 (590)
9 PF09452 Mvb12: ESCRT-I subuni 15.5 1.1E+02 0.0023 21.3 1.6 28 35-62 25-52 (91)
10 PF14046 NR_Repeat: Nuclear re 14.6 1.1E+02 0.0023 18.9 1.3 15 72-86 25-39 (46)
No 1
>KOG1991|consensus
Probab=99.88 E-value=1.2e-23 Score=187.14 Aligned_cols=66 Identities=47% Similarity=0.949 Sum_probs=64.7
Q ss_pred hheecccCHHhhchhhHHHHHHHHHHHcCCCCCCCCCCCChhhhhcCCceeehHHHHHHHHHHhcC
Q psy3385 34 IITEVYTVHWVISREVFAQWMEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFER 99 (99)
Q Consensus 34 ~~Ty~~LP~~L~~~e~~~~Wm~lf~~II~kpvP~e~l~~DedER~~~pWWK~KKWA~~iL~RLF~R 99 (99)
.++|++||..|.++++|.+||++|++|+++|+|.|+++.|+|+|+.+|||||||||+|||||+|+|
T Consensus 208 s~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~R 273 (1010)
T KOG1991|consen 208 SLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFER 273 (1010)
T ss_pred HHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999998
No 2
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8.7e-19 Score=154.60 Aligned_cols=65 Identities=31% Similarity=0.659 Sum_probs=63.9
Q ss_pred heecccCHHhhchhhHHHHHHHHHHHcCCCCCCCCCCCChhhhhcCCceeehHHHHHHHHHHhcC
Q psy3385 35 ITEVYTVHWVISREVFAQWMEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFER 99 (99)
Q Consensus 35 ~Ty~~LP~~L~~~e~~~~Wm~lf~~II~kpvP~e~l~~DedER~~~pWWK~KKWA~~iL~RLF~R 99 (99)
++|++||++|+..|+|.+|.+++++|+++|+|.|+++.|++.|++++|.||||||++||||+|+|
T Consensus 208 vcy~~LP~~lsa~e~f~sw~ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqR 272 (970)
T COG5656 208 VCYYSLPDFLSAIETFSSWFQLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQR 272 (970)
T ss_pred HHHhhCCHHHccchhhHHHHHHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999997
No 3
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=98.70 E-value=4.2e-09 Score=85.84 Aligned_cols=60 Identities=25% Similarity=0.374 Sum_probs=44.3
Q ss_pred heecccCHHhhchhhHHHHHHHHHHHcCCCCCCCCCCCChhhhhcCCceeehHHHHHHHHHHhcC
Q psy3385 35 ITEVYTVHWVISREVFAQWMEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFER 99 (99)
Q Consensus 35 ~Ty~~LP~~L~~~e~~~~Wm~lf~~II~kpvP~e~l~~DedER~~~pWWK~KKWA~~iL~RLF~R 99 (99)
+|+.+||+++. +++..||+.|+.+++.+.|... +.|++|+. ++||+|+|+.+|+++..+|
T Consensus 67 L~~~DLPe~fe--d~l~~wm~~f~~~L~~~~p~l~-~~d~~e~~--~l~kvK~~i~~~~~ly~~k 126 (370)
T PF08506_consen 67 LNCQDLPEFFE--DNLSEWMEIFHKYLTYPNPALE-EDDDDEPG--LLEKVKAWICENLNLYAEK 126 (370)
T ss_dssp HHSSS--HHHH--HTHHHHHHHHHHHHH--SGGG--TT-SSS----HHHHHHHHHHHHHHHHHHH
T ss_pred HccCcCcHHHH--HHHHHHHHHHHHHHcCCCcccC-CCCccccc--HHHHHHHHHHHHHHHHHHH
Confidence 58999999884 6899999999999999998654 44555544 6899999999999998764
No 4
>PF07389 DUF1500: Protein of unknown function (DUF1500); InterPro: IPR009974 This family consists of several Orthopoxvirus specific proteins, which include Vaccinia virus, B6 protein, they are around 100 residues in length. The function of this family is unknown.
Probab=21.95 E-value=48 Score=23.39 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=8.7
Q ss_pred HHHHHHHHhcC
Q psy3385 89 ALHILSRIFER 99 (99)
Q Consensus 89 A~~iL~RLF~R 99 (99)
-+||++|+|+|
T Consensus 35 IlhNIyrlftr 45 (100)
T PF07389_consen 35 ILHNIYRLFTR 45 (100)
T ss_pred HHHHHHHHHHh
Confidence 37888888876
No 5
>COG4304 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=19.08 E-value=72 Score=24.33 Aligned_cols=15 Identities=53% Similarity=0.913 Sum_probs=13.8
Q ss_pred ehHHHHHHHHHHhcC
Q psy3385 85 CKKWALHILSRIFER 99 (99)
Q Consensus 85 ~KKWA~~iL~RLF~R 99 (99)
.|||-|.||+-||+|
T Consensus 84 i~Kwly~IL~~Lf~~ 98 (166)
T COG4304 84 IKKWLYVILSDLFHR 98 (166)
T ss_pred HHHHHHHHHHHHHHh
Confidence 799999999999975
No 6
>PHA02602 56 dCTP pyrophosphatase; Provisional
Probab=18.46 E-value=54 Score=25.23 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=43.3
Q ss_pred HHHHHhhhcccchhhee---cccCHHhhchhhHHHHHHHHHHHcCCCCCC-----CCC-CCChhhhhcCCceeeh
Q psy3385 21 VLIRVQRAFDYDLIITE---VYTVHWVISREVFAQWMEIFRQVAERPVPE-----HTL-TLDEDERADTPWWKCK 86 (99)
Q Consensus 21 ~~~~~~~~~~~~~~~Ty---~~LP~~L~~~e~~~~Wm~lf~~II~kpvP~-----e~l-~~DedER~~~pWWK~K 86 (99)
+.+..|++++-.++-++ +.=|..+-+.+.+..|+......|+...-+ .+| ..+.+-..-+.|||.+
T Consensus 34 ~m~dmQ~~lq~~l~~~~p~~~~~p~~l~t~ge~l~W~~~~~~ai~dE~rEL~t~Lggmsng~k~~s~~WK~Wk~~ 108 (172)
T PHA02602 34 VMLDMQKSLQVRLANDKPEYNPHPDELKTCGEILDWLRNQDDYIADETRELYTSLGGMSNGEKDASAVWKPWKAN 108 (172)
T ss_pred HHHHHHHHHHHHHcccccccCCCchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccchHhhhh
Confidence 45678888888887433 333677777777789999998888854421 122 2233445578888876
No 7
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=17.75 E-value=94 Score=17.67 Aligned_cols=10 Identities=40% Similarity=0.933 Sum_probs=7.8
Q ss_pred HHHHHHHHhh
Q psy3385 18 IAFVLIRVQR 27 (99)
Q Consensus 18 ~~~~~~~~~~ 27 (99)
+.|+|.|+|-
T Consensus 20 ~Gf~LLkiQG 29 (31)
T PF08041_consen 20 LGFVLLKIQG 29 (31)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHhheeec
Confidence 5688999884
No 8
>KOG0564|consensus
Probab=16.68 E-value=1.4e+02 Score=26.95 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=29.4
Q ss_pred ccchhheecccCHHhhchhhHHHHHHHHHHH-cCCCCCCCCCCC
Q psy3385 30 DYDLIITEVYTVHWVISREVFAQWMEIFRQV-AERPVPEHTLTL 72 (99)
Q Consensus 30 ~~~~~~Ty~~LP~~L~~~e~~~~Wm~lf~~I-I~kpvP~e~l~~ 72 (99)
.-||++|| .+-+.|+|..|...++.+ |+-|+=+..||.
T Consensus 181 GaDFIiTQ-----lFYd~e~flkfv~~cR~~gi~~PIvPGIMPI 219 (590)
T KOG0564|consen 181 GADFIITQ-----LFYDVETFLKFVKDCRAAGINVPIVPGIMPI 219 (590)
T ss_pred cchhhhhh-----hhcCHHHHHHHHHHHHHhCCCCCcccccccc
Confidence 46999998 468999999999999876 455554566664
No 9
>PF09452 Mvb12: ESCRT-I subunit Mvb12; InterPro: IPR019014 The endosomal sorting complex required for transport (ESCRT) complexes play a critical role in receptor down-regulation and retroviral budding. A new component of the ESCRT-I complex was identified [], multivesicular body sorting factor of 12 kDa (Mvb12), which binds to the coiled-coil domain of the ESCRT-I subunit vacuolar protein sorting 23 (Vps23) []. ; PDB: 2P22_D.
Probab=15.53 E-value=1.1e+02 Score=21.35 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=17.1
Q ss_pred heecccCHHhhchhhHHHHHHHHHHHcC
Q psy3385 35 ITEVYTVHWVISREVFAQWMEIFRQVAE 62 (99)
Q Consensus 35 ~Ty~~LP~~L~~~e~~~~Wm~lf~~II~ 62 (99)
+-.+.+|+.....+.|.+|.+.+-.|++
T Consensus 25 ~P~~~l~~~~~t~em~~~W~~ECd~i~~ 52 (91)
T PF09452_consen 25 VPEIKLPPLQPTKEMFQPWYEECDQIVE 52 (91)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCCCChHHHHHHHHHHHHHHHH
Confidence 4456777778888999999999998886
No 10
>PF14046 NR_Repeat: Nuclear receptor repeat
Probab=14.63 E-value=1.1e+02 Score=18.88 Aligned_cols=15 Identities=33% Similarity=1.210 Sum_probs=12.1
Q ss_pred CChhhhhcCCceeeh
Q psy3385 72 LDEDERADTPWWKCK 86 (99)
Q Consensus 72 ~DedER~~~pWWK~K 86 (99)
.-+++|...|||.+-
T Consensus 25 aaPe~~~gapwW~~s 39 (46)
T PF14046_consen 25 AAPEARPGAPWWDCS 39 (46)
T ss_pred cCCcCccCCcccCcc
Confidence 347999999999863
Done!