Query psy3385
Match_columns 99
No_of_seqs 109 out of 177
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 23:40:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 97.9 7.4E-06 2.5E-10 69.3 3.3 61 35-99 216-276 (960)
2 1x1f_A Signal-transducing adap 28.6 39 0.0013 23.0 2.7 25 45-69 96-120 (149)
3 2d9v_A Pleckstrin homology dom 26.9 71 0.0024 20.3 3.6 25 45-69 97-121 (130)
4 2l3i_A Aoxki4A, antimicrobial 25.5 37 0.0013 18.3 1.6 16 82-97 7-22 (30)
5 3cxb_B Pleckstrin homology dom 23.8 53 0.0018 20.5 2.4 22 45-66 84-105 (112)
6 2rdd_B UPF0092 membrane protei 23.0 45 0.0015 18.1 1.7 15 14-28 12-26 (37)
7 1q90_M Cytochrome B6F complex 21.9 53 0.0018 18.8 1.9 11 18-28 23-33 (39)
8 2cof_A Protein KIAA1914; PH do 19.4 97 0.0033 18.7 3.0 23 45-67 84-106 (107)
9 2lm0_A AF4/FMR2 family member 17.6 29 0.00098 24.4 0.1 10 26-35 97-106 (125)
10 1vf5_F Protein PET M; photosyn 17.4 54 0.0018 18.3 1.2 11 18-28 22-32 (35)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.85 E-value=7.4e-06 Score=69.34 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=46.0
Q ss_pred heecccCHHhhchhhHHHHHHHHHHHcCCCCCCCCCCCChhhhhcCCceeehHHHHHHHHHHhcC
Q psy3385 35 ITEVYTVHWVISREVFAQWMEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFER 99 (99)
Q Consensus 35 ~Ty~~LP~~L~~~e~~~~Wm~lf~~II~kpvP~e~l~~DedER~~~pWWK~KKWA~~iL~RLF~R 99 (99)
+++.++|..+ .+++..|++.|.++++.+.|.. ..|+++++..+|||+|||++++++++++|
T Consensus 216 l~~~~~~~~~--~~~~~~~~~~~~~~l~~~~p~~--~~d~d~~~~~~~~~vk~~~~~~l~~l~~~ 276 (960)
T 1wa5_C 216 FNCQDIPEFF--EDNIQVGMGIFHKYLSYSNPLL--EDPDETEHASVLIKVKSSIQELVQLYTTR 276 (960)
T ss_dssp HHSSCCCHHH--HHTHHHHHHHHHHHHSCCSCCC--C------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchHHH--HHHHHHHHHHHHHHHcCCCCcc--cCCcccccccHHHHHHHHHHHHHHHHHHH
Confidence 3457889887 4589999999999999877642 34567788899999999999999998753
No 2
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=28.60 E-value=39 Score=23.03 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.5
Q ss_pred hchhhHHHHHHHHHHHcCCCCCCCC
Q psy3385 45 ISREVFAQWMEIFRQVAERPVPEHT 69 (99)
Q Consensus 45 ~~~e~~~~Wm~lf~~II~kpvP~e~ 69 (99)
-+++....|++.+.+++..+.|+..
T Consensus 96 ~s~ee~~eWi~aI~~v~~~~~p~~~ 120 (149)
T 1x1f_A 96 ENTESGEEWRGFILTVTELSVPQNV 120 (149)
T ss_dssp SSHHHHHHHHHHHHHHHHSSCCSSC
T ss_pred CCHHHHHHHHHHHHHHHcccCCCcc
Confidence 4568899999999999999998654
No 3
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.91 E-value=71 Score=20.29 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=21.0
Q ss_pred hchhhHHHHHHHHHHHcCCCCCCCC
Q psy3385 45 ISREVFAQWMEIFRQVAERPVPEHT 69 (99)
Q Consensus 45 ~~~e~~~~Wm~lf~~II~kpvP~e~ 69 (99)
.+.+....|++.+..++..|+++..
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~~~~~~ 121 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTPAPAGA 121 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCCCCTTS
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCC
Confidence 4568899999999999999887543
No 4
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=25.47 E-value=37 Score=18.26 Aligned_cols=16 Identities=38% Similarity=0.984 Sum_probs=13.2
Q ss_pred ceeehHHHHHHHHHHh
Q psy3385 82 WWKCKKWALHILSRIF 97 (99)
Q Consensus 82 WWK~KKWA~~iL~RLF 97 (99)
=||||-.--+.|-||.
T Consensus 7 swkckafkqrvlkrll 22 (30)
T 2l3i_A 7 SWKCKAFKQRVLKRLL 22 (30)
T ss_dssp CSCCCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH
Confidence 3899998888888875
No 5
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=23.79 E-value=53 Score=20.54 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=17.8
Q ss_pred hchhhHHHHHHHHHHHcCCCCC
Q psy3385 45 ISREVFAQWMEIFRQVAERPVP 66 (99)
Q Consensus 45 ~~~e~~~~Wm~lf~~II~kpvP 66 (99)
.+++.+..|++.+...++..+.
T Consensus 84 ~s~ee~~~Wi~ai~~~~~~~~~ 105 (112)
T 3cxb_B 84 ESEAEMAEWMQHLCQAVSKGVI 105 (112)
T ss_dssp SSHHHHHHHHHHHHHHHTCC--
T ss_pred CCHHHHHHHHHHHHHHhhcccC
Confidence 4578899999999999998663
No 6
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=23.00 E-value=45 Score=18.05 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHhhh
Q psy3385 14 MFVLIAFVLIRVQRA 28 (99)
Q Consensus 14 ~~~~~~~~~~~~~~~ 28 (99)
+|++.-|.+||-|+.
T Consensus 12 ~~~ifYFl~iRPQ~K 26 (37)
T 2rdd_B 12 FGLIFYFMILRPQQK 26 (37)
T ss_dssp HHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhhhHHH
Confidence 344445777887763
No 7
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=21.94 E-value=53 Score=18.75 Aligned_cols=11 Identities=55% Similarity=0.911 Sum_probs=9.0
Q ss_pred HHHHHHHHhhh
Q psy3385 18 IAFVLIRVQRA 28 (99)
Q Consensus 18 ~~~~~~~~~~~ 28 (99)
+.|+|.|+|.+
T Consensus 23 ~Gf~LLkiqg~ 33 (39)
T 1q90_M 23 IGFVLLRVESL 33 (39)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhhhcc
Confidence 56899999975
No 8
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=19.44 E-value=97 Score=18.67 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=18.5
Q ss_pred hchhhHHHHHHHHHHHcCCCCCC
Q psy3385 45 ISREVFAQWMEIFRQVAERPVPE 67 (99)
Q Consensus 45 ~~~e~~~~Wm~lf~~II~kpvP~ 67 (99)
.+.+....|++.+...+..+..+
T Consensus 84 ~s~~e~~~Wi~al~~~~~~~~~p 106 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGSGPSS 106 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSCSSSC
T ss_pred CCHHHHHHHHHHHHHHHcCCCCC
Confidence 46688999999999999876443
No 9
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=17.64 E-value=29 Score=24.44 Aligned_cols=10 Identities=40% Similarity=0.790 Sum_probs=8.0
Q ss_pred hhhcccchhh
Q psy3385 26 QRAFDYDLII 35 (99)
Q Consensus 26 ~~~~~~~~~~ 35 (99)
..+||+|||+
T Consensus 97 ~~tfDFDLc~ 106 (125)
T 2lm0_A 97 NTTFDFDLCS 106 (125)
T ss_dssp SSCEEECTTT
T ss_pred cccccceeec
Confidence 3579999996
No 10
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=17.42 E-value=54 Score=18.29 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=8.7
Q ss_pred HHHHHHHHhhh
Q psy3385 18 IAFVLIRVQRA 28 (99)
Q Consensus 18 ~~~~~~~~~~~ 28 (99)
+.|+|.|+|.+
T Consensus 22 ~Gf~LLkiqg~ 32 (35)
T 1vf5_F 22 LGVLLLKIQGA 32 (35)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHhheeecc
Confidence 56899999864
Done!