RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3385
         (99 letters)



>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
           transport, exportin, RAN GTPase, protein transport; HET:
           GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
           PDB: 1z3h_A
          Length = 960

 Score = 31.4 bits (70), Expect = 0.030
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 3/50 (6%)

Query: 48  EVFAQWMEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIF 97
           +     M IF +      P   L  D DE          K ++  L +++
Sbjct: 227 DNIQVGMGIFHKYLSYSNP---LLEDPDETEHASVLIKVKSSIQELVQLY 273


>1dqg_A Mannose receptor; beta trefoil, multilectin receptor, pituitary
          hormones, sulfated carbohydrate, sugar binding protein;
          1.70A {Mus musculus} SCOP: b.42.2.2 PDB: 1dqo_A*
          1fwu_A* 1fwv_A*
          Length = 135

 Score = 24.3 bits (52), Expect = 7.6
 Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 66 PEHTLTLDE-DERADTPWWKCKKWAL 90
             ++TL   D +++   W+CK   L
Sbjct: 63 DWASVTLYACDSKSEYQKWECKNDTL 88


>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
           O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
           2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
          Length = 568

 Score = 24.4 bits (53), Expect = 9.8
 Identities = 3/16 (18%), Positives = 10/16 (62%)

Query: 45  ISREVFAQWMEIFRQV 60
           ++ +  A+ + + R+V
Sbjct: 389 LNPQSMARMLAVLREV 404


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.139    0.448 

Gapped
Lambda     K      H
   0.267   0.0478    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,630,564
Number of extensions: 87004
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 15
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.0 bits)