RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3385
         (99 letters)



>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 959

 Score = 38.7 bits (89), Expect = 3e-05
 Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 2/53 (3%)

Query: 47  REVFAQWMEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFER 99
            +     M IF +      P   L   ++    +   K K     ++     R
Sbjct: 226 EDNIQVGMGIFHKYLSYSNPL--LEDPDETEHASVLIKVKSSIQELVQLYTTR 276


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.139    0.448 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 410,383
Number of extensions: 16743
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 10
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.0 bits)