Query psy3386
Match_columns 76
No_of_seqs 173 out of 1023
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 23:41:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00042 CUB Domain first fo 99.5 1.3E-13 2.7E-18 80.7 7.5 56 11-73 1-56 (102)
2 PF00431 CUB: CUB domain CUB d 99.5 2E-13 4.2E-18 80.3 7.8 46 6-51 5-50 (110)
3 cd00041 CUB CUB domain; extrac 99.5 2.1E-13 4.5E-18 80.4 7.3 60 7-73 6-66 (113)
4 KOG4292|consensus 98.8 1.8E-08 4E-13 73.8 5.7 50 2-51 292-341 (454)
5 KOG4586|consensus 98.1 1.6E-05 3.4E-10 50.5 5.8 44 8-51 47-91 (156)
6 KOG4292|consensus 97.7 2.9E-05 6.4E-10 57.2 3.2 65 3-70 170-235 (454)
7 PF02408 CUB_2: CUB-like domai 94.6 0.073 1.6E-06 32.5 4.0 25 21-45 37-61 (120)
8 PF09776 Mitoc_L55: Mitochondr 62.3 13 0.00029 23.0 3.2 36 3-45 27-62 (116)
9 KOG2923|consensus 46.6 8.1 0.00017 21.7 0.4 29 35-66 26-54 (67)
10 PF01186 Lysyl_oxidase: Lysyl 46.5 16 0.00034 24.8 1.8 39 13-51 134-176 (205)
11 COG5216 Uncharacterized conser 45.8 14 0.00031 20.5 1.3 31 33-66 24-54 (67)
12 KOG2689|consensus 41.4 46 0.001 23.7 3.5 32 15-46 196-229 (290)
13 smart00166 UBX Domain present 39.2 63 0.0014 17.8 3.4 21 26-46 3-23 (80)
14 PHA02122 hypothetical protein 33.4 37 0.0008 18.6 1.6 12 61-72 28-39 (65)
15 KOG0292|consensus 32.7 86 0.0019 26.3 4.2 22 30-60 107-128 (1202)
16 PF06473 FGF-BP1: FGF binding 32.0 72 0.0016 21.9 3.3 29 10-45 43-72 (231)
17 PF05428 CRF-BP: Corticotropin 30.1 1.3E+02 0.0027 21.8 4.3 28 23-50 76-103 (311)
18 PF02843 GARS_C: Phosphoribosy 29.9 33 0.00073 19.9 1.2 14 12-25 6-19 (93)
19 PF12677 DUF3797: Domain of un 27.9 21 0.00046 18.9 0.1 15 55-69 12-26 (49)
20 PF03676 UPF0183: Uncharacteri 26.7 85 0.0018 23.2 3.1 35 2-36 281-317 (394)
21 PF14064 HmuY: HmuY protein; P 24.9 1.5E+02 0.0031 18.4 3.6 23 29-51 126-148 (159)
22 PF02910 Succ_DH_flav_C: Fumar 23.7 1.6E+02 0.0034 17.8 3.5 43 9-51 77-119 (129)
23 cd01770 p47_UBX p47-like ubiqu 23.5 1.5E+02 0.0032 16.6 3.1 20 27-46 4-23 (79)
24 cd01767 UBX UBX (ubiquitin reg 22.7 1.4E+02 0.0031 16.1 3.1 19 27-45 2-20 (77)
25 KOG0281|consensus 22.5 66 0.0014 24.1 1.8 29 23-51 436-464 (499)
26 cd07472 HmuY_like Bacterial pr 21.8 1.9E+02 0.0042 17.4 3.6 25 27-51 83-107 (121)
27 PF14400 Transglut_i_TM: Inact 21.7 77 0.0017 20.7 1.9 32 9-40 50-84 (165)
28 cd01772 SAKS1_UBX SAKS1-like U 21.4 1.6E+02 0.0035 16.3 3.2 21 26-46 3-23 (79)
29 PF05015 Plasmid_killer: Plasm 21.0 1.4E+02 0.0029 17.2 2.7 25 22-46 57-81 (93)
No 1
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=99.50 E-value=1.3e-13 Score=80.72 Aligned_cols=56 Identities=30% Similarity=0.513 Sum_probs=46.7
Q ss_pred eEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEec
Q psy3386 11 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCL 73 (76)
Q Consensus 11 G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~~ 73 (76)
|.|.||+||..||++..|.|.|+++++.+|.|+|+.|+|+. .. .|..+.+...++.
T Consensus 1 G~i~Sp~yP~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~----~~---~C~~d~l~i~~g~ 56 (102)
T smart00042 1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLES----SD---NCEYDYVEIYDGP 56 (102)
T ss_pred CEEeCCCCCcCCCCCCcEEEEEECCCCeEEEEEEEEEeccC----CC---CeeEeEEEEEeCC
Confidence 78999999999999999999999999999999999999997 22 3554555554443
No 2
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=99.49 E-value=2e-13 Score=80.31 Aligned_cols=46 Identities=33% Similarity=0.609 Sum_probs=40.1
Q ss_pred CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCc
Q psy3386 6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWW 51 (76)
Q Consensus 6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~ 51 (76)
.....|.|+||+||..||.+..|.|.|+++++++|.|+|..|+|+.
T Consensus 5 ~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~ 50 (110)
T PF00431_consen 5 LTNNSGIISSPNYPSNYPSNSDCTWTITAPPGHRIRLTFLSFDLES 50 (110)
T ss_dssp ECSSEEEEESTTTTS-SSSSEEEEEEEE-STTEEEEEEEEEEEB--
T ss_pred EECCeEEEECCCCCCCCCCCCcEeEEEEecccceeeecccccccee
Confidence 4567899999999999999999999999999999999999999997
No 3
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=99.48 E-value=2.1e-13 Score=80.37 Aligned_cols=60 Identities=28% Similarity=0.466 Sum_probs=49.9
Q ss_pred ccc-ceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEec
Q psy3386 7 GHR-NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCL 73 (76)
Q Consensus 7 ~~~-~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~~ 73 (76)
... .|.|.||+||..||++..|.|.|+++++++|.|+|+.|+|+. . ..|..+.+..+++.
T Consensus 6 ~~~~~g~i~Sp~~p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~----~---~~C~~d~l~i~~g~ 66 (113)
T cd00041 6 TASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLES----S---PNCSYDYLEIYDGP 66 (113)
T ss_pred ccCCCeEEECCCCCCCCCCCCcEEEEEEcCCCCEEEEEEeCccccc----C---CCCCCcEEEEEcCC
Confidence 344 899999999999999999999999999999999999999997 2 35655555555543
No 4
>KOG4292|consensus
Probab=98.75 E-value=1.8e-08 Score=73.76 Aligned_cols=50 Identities=24% Similarity=0.402 Sum_probs=46.0
Q ss_pred ccCCCcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCc
Q psy3386 2 FNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWW 51 (76)
Q Consensus 2 ~ns~~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~ 51 (76)
.|+++....|.++||+||..|+++..|+|++.++.++.+.+.|+.|-+|.
T Consensus 292 C~~~~~~~~G~~~Sp~yp~~y~~~l~Ct~~l~~~~g~~l~v~fh~~~~~~ 341 (454)
T KOG4292|consen 292 CNRTYHGKFGNLTSPGYPQNYPNNLDCTTHLTVPGGHTLVVFFHEFSIEN 341 (454)
T ss_pred cccceecceeEEcCCCCcccCCCCCcceEEEEcCCCCEEEEEeecccchh
Confidence 57778888999999999999999999999999999999999988887776
No 5
>KOG4586|consensus
Probab=98.06 E-value=1.6e-05 Score=50.51 Aligned_cols=44 Identities=30% Similarity=0.542 Sum_probs=40.4
Q ss_pred ccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEE-eEEEeCc
Q psy3386 8 HRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVF-ESFDDWW 51 (76)
Q Consensus 8 ~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F-~~f~le~ 51 (76)
+..+.++||+||..||++.+|...|.+.+-+-|.+.| +.|.+|.
T Consensus 47 ~n~~Iftspn~ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEp 91 (156)
T KOG4586|consen 47 QNFNIFTSPNFPSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEP 91 (156)
T ss_pred cccceEecCCccccCCCCcceEEeEecccccceEEeeeeeEEecc
Confidence 4567899999999999999999999999999999999 5689997
No 6
>KOG4292|consensus
Probab=97.73 E-value=2.9e-05 Score=57.22 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=52.5
Q ss_pred cCCCcc-cceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeE
Q psy3386 3 NSTGGH-RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSI 70 (76)
Q Consensus 3 ns~~~~-~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~ 70 (76)
+.++.. ..|.+.+|++|..|+....|.|.+.+++++++.+++..+++.. ....|..-+..++...
T Consensus 170 ~~t~~~q~sg~~~~~~~p~~~v~s~~c~Wli~t~p~q~l~irv~~~~~~p---t~n~c~s~~L~i~m~~ 235 (454)
T KOG4292|consen 170 NITFTTQNSGSIPSPNDPDTYVASSICNWLIDTPPGQRLYIRVVHLHLAP---TINECESASLTIFMSY 235 (454)
T ss_pred ceeecCcccccccCCCCcccccccchhhhhhhcCCCcceeEEEEeccCCc---ccccccceeEEEEecc
Confidence 334344 4499999999999999999999999999999999999998876 3455777676666554
No 7
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=94.63 E-value=0.073 Score=32.45 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=22.1
Q ss_pred CCCCCceeEEEEEeCCCceEEEEEe
Q psy3386 21 LYPRDTECHYFFYGRNDERIKLVFE 45 (76)
Q Consensus 21 ~Yp~~~~C~W~I~~~~g~~I~L~F~ 45 (76)
.+|.+..|.|.|.+|.|..++|++.
T Consensus 37 ~~p~n~~C~y~i~iP~G~~a~v~~~ 61 (120)
T PF02408_consen 37 QFPANQNCTYQINIPKGYYAKVTLS 61 (120)
T ss_pred ccCCCCceEEEEEcCCceEEEEEEE
Confidence 4788899999999999999998764
No 8
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=62.29 E-value=13 Score=23.02 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=28.8
Q ss_pred cCCCcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEe
Q psy3386 3 NSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFE 45 (76)
Q Consensus 3 ns~~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~ 45 (76)
||+ .++-..+...-|+..|| -.+.-|+|..|.+.+.
T Consensus 27 nsn-rAsitr~~R~~Y~R~Yp------v~lV~pDGSTI~Iry~ 62 (116)
T PF09776_consen 27 NSN-RASITRVHRQAYARLYP------VLLVRPDGSTINIRYH 62 (116)
T ss_pred ccc-hhhheeechhhhhhhcc------EEEEecCCCEEEEecc
Confidence 555 56677888889999999 4578889999998774
No 9
>KOG2923|consensus
Probab=46.60 E-value=8.1 Score=21.67 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=20.7
Q ss_pred CCCceEEEEEeEEEeCccccCCCcCCCCcceE
Q psy3386 35 RNDERIKLVFESFDDWWWIWLRQHCLGCKNFI 66 (76)
Q Consensus 35 ~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~ 66 (76)
|-|.+.+++-+++.... .-+.|++|+..|
T Consensus 26 pCGDrf~It~edL~~ge---~Va~CpsCSL~I 54 (67)
T KOG2923|consen 26 PCGDRFQITLEDLENGE---DVARCPSCSLII 54 (67)
T ss_pred CCCCeeeecHHHHhCCC---eeecCCCceEEE
Confidence 45677666666666665 467899999776
No 10
>PF01186 Lysyl_oxidase: Lysyl oxidase ; InterPro: IPR001695 Lysyl oxidase (1.4.3.13 from EC) (LOX) [] is an extracellular copper-dependent enzyme that catalyses the oxidative deamination of peptidyl lysine residues in precursors of various collagens and elastins, yielding alpha-aminoadipic-delta-semialdehyde. The deaminated lysines are then able to form semialdehyde cross-links, resulting in the formation of insoluble collagen and elastin fibres in the extracellular matrix []. The active site of LOX resides towards the C terminus: this region also binds a single copper atom in an octahedral coordination complex involving at least 3 His residues []. Four histidine residues are clustered in a central region of the enzyme. This region is thought to be involved in cooper-binding and is called the 'copper-talon' [].; GO: 0005507 copper ion binding, 0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor, 0055114 oxidation-reduction process
Probab=46.46 E-value=16 Score=24.84 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=27.6
Q ss_pred EECCCCCCCCCCCceeEEE-E-EeCCCc-eEEEEE-eEEEeCc
Q psy3386 13 FTSPNFPGLYPRDTECHYF-F-YGRNDE-RIKLVF-ESFDDWW 51 (76)
Q Consensus 13 i~SP~yP~~Yp~~~~C~W~-I-~~~~g~-~I~L~F-~~f~le~ 51 (76)
-.|||+-..|..+..|+|. | .+++|. .+++.. ..+.|.+
T Consensus 134 GIS~Gc~DtY~~~idcQWiDITdvp~G~Y~l~V~vNP~~~v~E 176 (205)
T PF01186_consen 134 GISPGCGDTYRHDIDCQWIDITDVPPGTYILQVTVNPEYRVAE 176 (205)
T ss_pred cccCCccccccCCCCccceeecCCCCccEEEEEecCCcccccc
Confidence 3699999999999999998 4 566654 455555 2344443
No 11
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=45.85 E-value=14 Score=20.46 Aligned_cols=31 Identities=13% Similarity=0.302 Sum_probs=23.4
Q ss_pred EeCCCceEEEEEeEEEeCccccCCCcCCCCcceE
Q psy3386 33 YGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFI 66 (76)
Q Consensus 33 ~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~ 66 (76)
--|-|.+.++..+++.... .-+.|++|+..+
T Consensus 24 PCPCGDRFeIsLeDl~~GE---~VArCPSCSLiv 54 (67)
T COG5216 24 PCPCGDRFEISLEDLRNGE---VVARCPSCSLIV 54 (67)
T ss_pred cCCCCCEeEEEHHHhhCCc---eEEEcCCceEEE
Confidence 3467888888888887766 467899999554
No 12
>KOG2689|consensus
Probab=41.36 E-value=46 Score=23.74 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=24.0
Q ss_pred CCCCCCCCCC--CceeEEEEEeCCCceEEEEEeE
Q psy3386 15 SPNFPGLYPR--DTECHYFFYGRNDERIKLVFES 46 (76)
Q Consensus 15 SP~yP~~Yp~--~~~C~W~I~~~~g~~I~L~F~~ 46 (76)
+|.-+..-|+ ...|+-.|+.++|+.+.-+|..
T Consensus 196 s~s~~~~spp~~ys~crlQiRl~DG~Tl~~tF~a 229 (290)
T KOG2689|consen 196 SPSAPSQSPPTDYSQCRLQIRLPDGQTLTQTFNA 229 (290)
T ss_pred CCCccccCCCCcccceEEEEEcCCCCeeeeecCc
Confidence 4443434444 6789999999999999998854
No 13
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=39.23 E-value=63 Score=17.83 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.0
Q ss_pred ceeEEEEEeCCCceEEEEEeE
Q psy3386 26 TECHYFFYGRNDERIKLVFES 46 (76)
Q Consensus 26 ~~C~W~I~~~~g~~I~L~F~~ 46 (76)
..|.-.|+.|+|.++.-+|..
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~ 23 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPS 23 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCC
Confidence 468889999999999998853
No 14
>PHA02122 hypothetical protein
Probab=33.39 E-value=37 Score=18.62 Aligned_cols=12 Identities=67% Similarity=1.146 Sum_probs=10.3
Q ss_pred CCcceEEEeEEe
Q psy3386 61 GCKNFIIHSIKC 72 (76)
Q Consensus 61 ~c~~~~i~~~~~ 72 (76)
+|.+.+||+++-
T Consensus 28 ~~~~iiihs~~~ 39 (65)
T PHA02122 28 GCENIIIHSFKD 39 (65)
T ss_pred CCCcEEEEeecc
Confidence 789999999873
No 15
>KOG0292|consensus
Probab=32.67 E-value=86 Score=26.31 Aligned_cols=22 Identities=23% Similarity=0.963 Sum_probs=17.9
Q ss_pred EEEEeCCCceEEEEEeEEEeCccccCCCcCC
Q psy3386 30 YFFYGRNDERIKLVFESFDDWWWIWLRQHCL 60 (76)
Q Consensus 30 W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~ 60 (76)
|.|.+.+.+.|.+ ++|++..|.
T Consensus 107 WIlSASDDQTIrI---------WNwqsr~~i 128 (1202)
T KOG0292|consen 107 WILSASDDQTIRI---------WNWQSRKCI 128 (1202)
T ss_pred eEEEccCCCeEEE---------EeccCCceE
Confidence 9999999999987 677776654
No 16
>PF06473 FGF-BP1: FGF binding protein 1 (FGF-BP1); InterPro: IPR010510 This family consists of several mammalian FGF binding protein 1. Fibroblast growth factors (FGFs) play important roles during foetal and embryonic development []. Fibroblast growth factor-binding protein (FGF-BP) 1 is a secreted protein that can bind fibroblast growth factors (FGFs) 1 and 2 [].
Probab=31.95 E-value=72 Score=21.87 Aligned_cols=29 Identities=14% Similarity=0.464 Sum_probs=18.3
Q ss_pred ceEEECCCCCCCCCCCceeEEEE-EeCCCceEEEEEe
Q psy3386 10 NGTFTSPNFPGLYPRDTECHYFF-YGRNDERIKLVFE 45 (76)
Q Consensus 10 ~G~i~SP~yP~~Yp~~~~C~W~I-~~~~g~~I~L~F~ 45 (76)
.|.|.++ ....|+|.+ ...++-.+.|...
T Consensus 43 ~GkF~Tk-------~~~~Ctw~v~~~~~~~~L~V~C~ 72 (231)
T PF06473_consen 43 SGKFVTK-------DQHACTWQVTTGEDGVELRVECK 72 (231)
T ss_pred cceeecC-------CCCceEEEeccCCCceEEEEEEc
Confidence 4666666 357899999 4444445555443
No 17
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=30.14 E-value=1.3e+02 Score=21.82 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=24.9
Q ss_pred CCCceeEEEEEeCCCceEEEEEeEEEeC
Q psy3386 23 PRDTECHYFFYGRNDERIKLVFESFDDW 50 (76)
Q Consensus 23 p~~~~C~W~I~~~~g~~I~L~F~~f~le 50 (76)
.+...|--.+-+.+.+.|.++|+.+++.
T Consensus 76 ~pq~~Ca~y~iaePd~~IeI~~~~vdid 103 (311)
T PF05428_consen 76 RPQLVCAAYFIAEPDELIEIEFDHVDID 103 (311)
T ss_pred CCCceeEEEEEeCCCeEEEEEEEEeecc
Confidence 4577899999999999999999999986
No 18
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=29.86 E-value=33 Score=19.91 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=9.5
Q ss_pred EEECCCCCCCCCCC
Q psy3386 12 TFTSPNFPGLYPRD 25 (76)
Q Consensus 12 ~i~SP~yP~~Yp~~ 25 (76)
.+.|++||..|..+
T Consensus 6 v~as~GYP~~~~~g 19 (93)
T PF02843_consen 6 VLASKGYPGSYEKG 19 (93)
T ss_dssp EEEETTTTSS--SS
T ss_pred EEeCCCcCCCCCCC
Confidence 56799999988653
No 19
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised. This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. There is a conserved CGN sequence motif.
Probab=27.86 E-value=21 Score=18.86 Aligned_cols=15 Identities=20% Similarity=0.281 Sum_probs=11.8
Q ss_pred CCCcCCCCcceEEEe
Q psy3386 55 LRQHCLGCKNFIIHS 69 (76)
Q Consensus 55 ~~~~C~~c~~~~i~~ 69 (76)
....|+.|.|+.|.+
T Consensus 12 kY~~Cp~CGN~~vGn 26 (49)
T PF12677_consen 12 KYCKCPKCGNDKVGN 26 (49)
T ss_pred hhccCcccCCcEeec
Confidence 356799999988864
No 20
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=26.73 E-value=85 Score=23.24 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=24.4
Q ss_pred ccCCCcccceEEECCCCCCCCCC--CceeEEEEEeCC
Q psy3386 2 FNSTGGHRNGTFTSPNFPGLYPR--DTECHYFFYGRN 36 (76)
Q Consensus 2 ~ns~~~~~~G~i~SP~yP~~Yp~--~~~C~W~I~~~~ 36 (76)
|+.+.+.....|..-|+|+.|.- ..+|.|.|....
T Consensus 281 fd~~~~~v~K~ILHtN~PG~~~Fn~y~rC~f~I~~~~ 317 (394)
T PF03676_consen 281 FDGNTHRVKKFILHTNIPGHYDFNRYNRCNFEIELSN 317 (394)
T ss_pred EeCCCceEEEEEEecCCCCCccccceeeeeeEEEecC
Confidence 44443445566666699998874 468999999863
No 21
>PF14064 HmuY: HmuY protein; PDB: 3H8T_A 3U22_A.
Probab=24.92 E-value=1.5e+02 Score=18.44 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=17.8
Q ss_pred EEEEEeCCCceEEEEEeEEEeCc
Q psy3386 29 HYFFYGRNDERIKLVFESFDDWW 51 (76)
Q Consensus 29 ~W~I~~~~g~~I~L~F~~f~le~ 51 (76)
.|.|+..+|...+|+|.+|.=+.
T Consensus 126 vyvik~~dG~yaKlq~~~~y~~~ 148 (159)
T PF14064_consen 126 VYVIKTADGNYAKLQFTDYYNDK 148 (159)
T ss_dssp EEEEE-TTS-EEEEEEEEEE-TT
T ss_pred EEEEEeCCCCEEEEEEEEEECCC
Confidence 89999999999999999987654
No 22
>PF02910 Succ_DH_flav_C: Fumarate reductase flavoprotein C-term; InterPro: IPR004112 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AEF_A 3AE9_A 3AE5_A 3AEA_A 3SFD_A 3AE7_A 3AEB_A 3AE8_A 1ZP0_A 3AE6_A ....
Probab=23.71 E-value=1.6e+02 Score=17.81 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=30.2
Q ss_pred cceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCc
Q psy3386 9 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWW 51 (76)
Q Consensus 9 ~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~ 51 (76)
+.|......||..-..+-.+...+...++..+.+.+.++.+..
T Consensus 77 SRG~H~R~D~P~~~d~~~~~~~~~~~~~~~~~~~~~~pv~~~~ 119 (129)
T PF02910_consen 77 SRGAHYREDYPERDDENWLKHIIVRLDGGGEMRISYEPVPFTD 119 (129)
T ss_dssp EBTTBEBTTSSSCETTTCSEEEEEEEETTTEEEEEEEE--GSC
T ss_pred CcccchhccccccccccccEEEEEEEcCCCceEEEEecCCCcc
Confidence 4566667788876666777888887776667888888877763
No 23
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=23.51 E-value=1.5e+02 Score=16.63 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=17.0
Q ss_pred eeEEEEEeCCCceEEEEEeE
Q psy3386 27 ECHYFFYGRNDERIKLVFES 46 (76)
Q Consensus 27 ~C~W~I~~~~g~~I~L~F~~ 46 (76)
.|.-.|+.|+|.++..+|..
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~ 23 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNS 23 (79)
T ss_pred eeEEEEECCCCCEEEEEeCC
Confidence 57788999999999998863
No 24
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=22.69 E-value=1.4e+02 Score=16.14 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=15.8
Q ss_pred eeEEEEEeCCCceEEEEEe
Q psy3386 27 ECHYFFYGRNDERIKLVFE 45 (76)
Q Consensus 27 ~C~W~I~~~~g~~I~L~F~ 45 (76)
.|.-.|+.|+|.++.-+|.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~ 20 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFN 20 (77)
T ss_pred cEEEEEEcCCCCEEEEEeC
Confidence 3677899999999998885
No 25
>KOG0281|consensus
Probab=22.50 E-value=66 Score=24.12 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=23.2
Q ss_pred CCCceeEEEEEeCCCceEEEEEeEEEeCc
Q psy3386 23 PRDTECHYFFYGRNDERIKLVFESFDDWW 51 (76)
Q Consensus 23 p~~~~C~W~I~~~~g~~I~L~F~~f~le~ 51 (76)
|.+..|.-++.-..|....|+|++|.+-.
T Consensus 436 ~~~~~Cl~~lv~hsgRVFrLQFD~fqIvs 464 (499)
T KOG0281|consen 436 PASTLCLRTLVEHSGRVFRLQFDEFQIIS 464 (499)
T ss_pred cccchHHHhhhhccceeEEEeecceEEEe
Confidence 45566777777777888999999999976
No 26
>cd07472 HmuY_like Bacterial proteins similar to Porphyromonas gingivalis HmuY. HmuY is a hemophore that scavenges heme from infected hosts and delivers it to the outer membrane receptor HmuR. Related but uncharacterized proteins do not appear to share the specific heme-binding site.
Probab=21.82 E-value=1.9e+02 Score=17.45 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCceEEEEEeEEEeCc
Q psy3386 27 ECHYFFYGRNDERIKLVFESFDDWW 51 (76)
Q Consensus 27 ~C~W~I~~~~g~~I~L~F~~f~le~ 51 (76)
.=.+.|+..+|...+|+|.+|.=+.
T Consensus 83 ~~vyvvr~~dG~yaKlqi~~yy~~~ 107 (121)
T cd07472 83 GKVYVVRTADGKYAKLQITSYYNDG 107 (121)
T ss_pred CcEEEEEeCCCCEEEEEEeeeecCC
Confidence 3578899999999999999887554
No 27
>PF14400 Transglut_i_TM: Inactive transglutaminase fused to 7 transmembrane helices
Probab=21.70 E-value=77 Score=20.68 Aligned_cols=32 Identities=9% Similarity=0.165 Sum_probs=24.5
Q ss_pred cceEEECCCCCCCC---CCCceeEEEEEeCCCceE
Q psy3386 9 RNGTFTSPNFPGLY---PRDTECHYFFYGRNDERI 40 (76)
Q Consensus 9 ~~G~i~SP~yP~~Y---p~~~~C~W~I~~~~g~~I 40 (76)
....+.||||--.+ ..+..-.|.++-..|.+.
T Consensus 50 l~E~~~SpGYGls~~~~~~~RrA~WS~R~A~G~Qt 84 (165)
T PF14400_consen 50 LDENFASPGYGLSIVDDDGNRRAEWSIRRASGPQT 84 (165)
T ss_pred EccccccCCCCeEEEecCCCcEEEEecccCCCceE
Confidence 34567899997654 457789999999988764
No 28
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=21.41 E-value=1.6e+02 Score=16.26 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=17.3
Q ss_pred ceeEEEEEeCCCceEEEEEeE
Q psy3386 26 TECHYFFYGRNDERIKLVFES 46 (76)
Q Consensus 26 ~~C~W~I~~~~g~~I~L~F~~ 46 (76)
..|.-.|+.|+|.++.-+|..
T Consensus 3 ~~~~i~iRlp~G~~~~~~F~~ 23 (79)
T cd01772 3 TETRIQIRLLDGTTLKQTFKA 23 (79)
T ss_pred cEEEEEEECCCCCEEEEEeCC
Confidence 357788999999999988853
No 29
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=20.97 E-value=1.4e+02 Score=17.18 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=19.0
Q ss_pred CCCCceeEEEEEeCCCceEEEEEeE
Q psy3386 22 YPRDTECHYFFYGRNDERIKLVFES 46 (76)
Q Consensus 22 Yp~~~~C~W~I~~~~g~~I~L~F~~ 46 (76)
.-.+..=.|.|++..+.+|.+.|.+
T Consensus 57 L~G~~~g~~Si~i~~~~RliF~~~~ 81 (93)
T PF05015_consen 57 LKGDRKGQWSIRINGNWRLIFRFED 81 (93)
T ss_pred ccCCCCCcEEEEeCCCEEEEEEEeC
Confidence 3345566899999999999887743
Done!