Query psy3386
Match_columns 76
No_of_seqs 173 out of 1023
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 23:41:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nzi_A Complement C1S componen 99.7 4.2E-16 1.5E-20 97.4 7.6 58 7-71 2-59 (159)
2 2wno_A Tumor necrosis factor-i 99.6 6.8E-16 2.3E-20 96.8 8.2 61 6-73 11-71 (149)
3 1szb_A Mannose binding lectin- 99.6 7.6E-16 2.6E-20 97.7 8.2 58 7-71 9-66 (170)
4 3poj_A Mannan-binding lectin s 99.6 8.3E-16 2.8E-20 91.9 6.6 60 7-71 10-70 (115)
5 4aqb_A Mannan-binding lectin s 99.6 3.9E-15 1.3E-19 103.1 7.3 45 7-51 6-50 (361)
6 3dem_A Complement factor MAsp- 99.5 1.3E-14 4.4E-19 97.5 7.4 59 6-71 5-63 (278)
7 1nt0_A MAsp2, mannose-binding 99.5 1.8E-14 6E-19 97.6 7.7 58 7-71 5-62 (286)
8 2qqo_A Neuropilin-2; VEGF rece 99.5 9.4E-14 3.2E-18 99.4 7.9 67 5-72 11-77 (460)
9 2qqm_A Neuropilin-1; VEGF rece 99.5 7.4E-14 2.5E-18 99.6 7.2 65 5-72 14-80 (450)
10 3dem_A Complement factor MAsp- 99.5 9.6E-14 3.3E-18 93.2 7.2 60 7-71 172-232 (278)
11 1nt0_A MAsp2, mannose-binding 99.4 2.5E-13 8.6E-18 91.9 6.6 60 7-71 171-231 (286)
12 4gz9_A Neuropilin-1, A5 protei 99.4 7.1E-13 2.4E-17 97.4 8.2 67 6-73 133-199 (577)
13 3kq4_B Cubilin; protein-protei 99.4 8.2E-13 2.8E-17 94.1 7.7 58 8-72 355-412 (457)
14 3kq4_B Cubilin; protein-protei 99.4 1.5E-12 5E-17 92.7 7.4 61 6-73 238-298 (457)
15 2qqk_A Neuropilin-2; VEGF rece 99.4 1.7E-12 5.9E-17 94.9 7.5 67 6-73 131-197 (579)
16 4gz9_A Neuropilin-1, A5 protei 99.3 1.5E-12 5.1E-17 95.7 6.9 57 9-73 17-75 (577)
17 1spp_A Major seminal plasma gl 99.3 1.3E-11 4.3E-16 73.5 7.1 51 6-72 10-60 (109)
18 1spp_B Major seminal plasma gl 99.3 1.5E-11 5E-16 73.8 7.2 40 6-50 13-52 (116)
19 2qqk_A Neuropilin-2; VEGF rece 99.2 1.5E-11 5.1E-16 90.0 7.2 56 9-72 14-71 (579)
20 4aqb_A Mannan-binding lectin s 99.2 2.5E-11 8.6E-16 83.9 7.4 46 6-51 171-217 (361)
21 1sfp_A ASFP; spermadhesin, bov 99.2 4.8E-11 1.6E-15 71.3 7.3 39 6-49 14-52 (114)
No 1
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.65 E-value=4.2e-16 Score=97.43 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=49.0
Q ss_pred cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEE
Q psy3386 7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIK 71 (76)
Q Consensus 7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~ 71 (76)
++..|.|+||+||..||++..|.|.|+++++++|+|+|.+|+||. .. .|..+.+..++
T Consensus 2 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~----~~---~C~~D~l~i~d 59 (159)
T 1nzi_A 2 PTMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIEL----SE---NCAYDSVQIIS 59 (159)
T ss_dssp CCSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCC----CG---GGCSSEEEEEC
T ss_pred CCCCEEEECCCCccCCCCCCCEEEEEEeCCCCEEEEEEeEEEecC----CC---CCCCCEEEEEe
Confidence 467899999999999999999999999999999999999999997 23 45545554444
No 2
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=99.65 E-value=6.8e-16 Score=96.81 Aligned_cols=61 Identities=25% Similarity=0.364 Sum_probs=51.4
Q ss_pred CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEec
Q psy3386 6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCL 73 (76)
Q Consensus 6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~~ 73 (76)
.....|.|+||+||..||++..|.|.|+++++++|+|+|.+|+||. .. .|..+.+..+++.
T Consensus 11 l~~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~L~F~~f~le~----~~---~C~~D~l~I~dg~ 71 (149)
T 2wno_A 11 FTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLED----DP---GCLADYVEIYDSY 71 (149)
T ss_dssp ECSSEEEEECTTTTSCCCTTCEEEEEEECCTTCEEEEEEEEEECCC----CT---TCCSSEEEEESSS
T ss_pred EECCceEEECCCCCcCCCCCCEEEEEEEECCCCEEEEEEEEEEecC----CC---CCCCCEEEEecCC
Confidence 3456799999999999999999999999999999999999999997 22 5655666665543
No 3
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.64 E-value=7.6e-16 Score=97.66 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=49.7
Q ss_pred cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEE
Q psy3386 7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIK 71 (76)
Q Consensus 7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~ 71 (76)
++..|.|+||+||..||++..|.|.|+++++++|+|+|.+|+||.. . .|..+.+..++
T Consensus 9 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~----~---~C~~D~l~i~d 66 (170)
T 1szb_A 9 EPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELS----H---LCEYDFVKLSS 66 (170)
T ss_dssp CCCEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCC----T---TSCSSEEEEES
T ss_pred cCCCeEEECCCCCcCCcCCCcEEEEEEcCCCCEEEEEEEEEEccCC----C---CCCCCEEEEEe
Confidence 5678999999999999999999999999999999999999999972 2 56555555544
No 4
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=99.62 E-value=8.3e-16 Score=91.91 Aligned_cols=60 Identities=32% Similarity=0.460 Sum_probs=48.9
Q ss_pred cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEe-EEEeCccccCCCcCCCCcceEEEeEE
Q psy3386 7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFE-SFDDWWWIWLRQHCLGCKNFIIHSIK 71 (76)
Q Consensus 7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~-~f~le~~~~~~~~C~~c~~~~i~~~~ 71 (76)
+...|.|+||+||..||++..|.|.|+++++++|+|+|. .|+||.. ... .|..+.+..++
T Consensus 10 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~i~l~f~d~f~le~~--~~~---~C~~D~l~i~d 70 (115)
T 3poj_A 10 TQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDH--PEV---PCPYDYIKIKA 70 (115)
T ss_dssp CSSEEEEECTTTTSCCCTTCEEEEEEECCTTCCCEEEECSCCBBCCC--SSS---SSCSCEEEEEE
T ss_pred cCCCEEEcCCCCCcCCcCCCeEEEEEEcCCCCEEEEEEecceecccC--CCC---CCCCeEEEEEc
Confidence 467899999999999999999999999999999999999 5999973 122 45445554444
No 5
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=103.13 Aligned_cols=45 Identities=31% Similarity=0.457 Sum_probs=43.1
Q ss_pred cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCc
Q psy3386 7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWW 51 (76)
Q Consensus 7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~ 51 (76)
+...|+|+||+||+.||+++.|.|.|++++|++|+|+|.+|+||.
T Consensus 6 t~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~l~F~~f~lE~ 50 (361)
T 4aqb_A 6 NNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLES 50 (361)
T ss_dssp ESSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCC
T ss_pred eCCeEEEeCCCCCCCCCCCCeEEEEEEECCCCEEEEEEeEEEecC
Confidence 457799999999999999999999999999999999999999997
No 6
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=97.52 Aligned_cols=59 Identities=25% Similarity=0.306 Sum_probs=49.1
Q ss_pred CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEE
Q psy3386 6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIK 71 (76)
Q Consensus 6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~ 71 (76)
.++..|.|+||+||..||++..|.|.|+++++++|+|+|.+|+||.+ . .|..+.+..++
T Consensus 5 lt~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~----~---~C~~D~l~v~d 63 (278)
T 3dem_A 5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS----Y---LCEYDYVKVET 63 (278)
T ss_dssp --CCEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC----G---GGCSSEEEEEC
T ss_pred eccCCceEeCCCCCCCCcCCCcEEEEEEECCCCEEEEEEEEEEeCCC----C---CCCCcEEEEec
Confidence 35678999999999999999999999999999999999999999972 2 45555555544
No 7
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=99.54 E-value=1.8e-14 Score=97.63 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=49.3
Q ss_pred cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEE
Q psy3386 7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIK 71 (76)
Q Consensus 7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~ 71 (76)
++..|.|+||+||..||++..|.|.|++++|++|+|+|..|+||. .. .|..+.+..++
T Consensus 5 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~L~F~~f~le~----~~---~C~~D~l~I~d 62 (286)
T 1nt0_A 5 EPVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLEL----SY---RCEYDFVKLTS 62 (286)
T ss_dssp CCCEEEEECTTTTSCCCSSCCEEEEEECCTTEEEEEEEEEEECCC----CG---GGCSSEEEEEE
T ss_pred cCCCceEeCCCCCccCcCCCcEEEEEEcCCCCEEEEEEEEEEecC----CC---CCCCcEEEEEC
Confidence 567899999999999999999999999999999999999999997 22 45545554444
No 8
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=99.48 E-value=9.4e-14 Score=99.39 Aligned_cols=67 Identities=25% Similarity=0.295 Sum_probs=50.9
Q ss_pred CCcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEe
Q psy3386 5 TGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKC 72 (76)
Q Consensus 5 ~~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~ 72 (76)
++....|.|+||+||..||++..|.|.|++++|++|.|+|..|+||.+... ..=..|..+.+..+++
T Consensus 11 ~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~~~~-~~~~~C~~D~l~i~dg 77 (460)
T 2qqo_A 11 NFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQ-VGEGDCKYDWLDIWDG 77 (460)
T ss_dssp EECSSEEEEECTTTTSCCCSSCEEEEEEECCTTCEEEEEEEEEECCCC---------CCSSEEEEESS
T ss_pred EEeCCceEEeCCCCCCCCCCCCEEEEEEEcCCCCEEEEEEEEEEccccccc-ccCCCCCCCEEEEEcC
Confidence 345678999999999999999999999999999999999999999973100 0001465566665554
No 9
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=99.48 E-value=7.4e-14 Score=99.59 Aligned_cols=65 Identities=28% Similarity=0.382 Sum_probs=51.4
Q ss_pred CCcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcC--CCCcceEEEeEEe
Q psy3386 5 TGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHC--LGCKNFIIHSIKC 72 (76)
Q Consensus 5 ~~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C--~~c~~~~i~~~~~ 72 (76)
+.....|.|+||+||..||++..|.|.|+++++++|.|+|.+|+||.+ ...+ ..|..+.+..+++
T Consensus 14 ~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~---~~~~~~~~C~~D~l~i~dg 80 (450)
T 2qqm_A 14 NYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPD---SNPPGGMFCRYDRLEIWDG 80 (450)
T ss_dssp EECSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC-------CCCSSCSSEEEEESS
T ss_pred eEeCCcEEEeCCCCCcCCCCCCeEEEEEEeCCCCEEEEEEEEEEeEec---cCCCCCCCCCCcEEEEecC
Confidence 345668999999999999999999999999999999999999999973 1100 1466566666554
No 10
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=99.48 E-value=9.6e-14 Score=93.22 Aligned_cols=60 Identities=32% Similarity=0.455 Sum_probs=49.6
Q ss_pred cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeE-EEeCccccCCCcCCCCcceEEEeEE
Q psy3386 7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFES-FDDWWWIWLRQHCLGCKNFIIHSIK 71 (76)
Q Consensus 7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~-f~le~~~~~~~~C~~c~~~~i~~~~ 71 (76)
+...|.|+||+||..||++..|.|.|+++++++|.|+|.+ |+||.+. .. .|..+.+.+++
T Consensus 172 ~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~f~le~~~--~~---~C~~D~l~i~d 232 (278)
T 3dem_A 172 TQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHP--EV---PCPYDYIKIKV 232 (278)
T ss_dssp CSSEEEEESTTTTSCCCSSCEEEEEEECCTTCCEEEEECSCCBBCCCS--SS---SSSSCEEEEEE
T ss_pred cCCccceeCCCCCCCCCCcCeEEEEEEeCCCcEEEEEEccccccccCC--CC---CCCCCEEEEec
Confidence 5678999999999999999999999999999999999997 9999731 22 45555555444
No 11
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=99.43 E-value=2.5e-13 Score=91.92 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=46.9
Q ss_pred cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEe-EEEeCccccCCCcCCCCcceEEEeEE
Q psy3386 7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFE-SFDDWWWIWLRQHCLGCKNFIIHSIK 71 (76)
Q Consensus 7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~-~f~le~~~~~~~~C~~c~~~~i~~~~ 71 (76)
....|.|+||+||..||++..|.|.|++++|++|+|+|. .|+||.+. .. .|..+.+..++
T Consensus 171 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~~f~le~~~--~~---~C~~D~l~i~d 231 (286)
T 1nt0_A 171 TGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHP--EA---QCPYDSLKIQT 231 (286)
T ss_dssp CSSSEEEECTTTTSCCCSSCEEEEEEECCSSCEEEEEECSCCBBCCC---------C--CEEEEEC
T ss_pred cCCceEEeCCCCCCCCCCCCEEEEEEECCCceEEEEEEeceEEeccCC--CC---CCCCcEEEEEe
Confidence 567899999999999999999999999999999999996 89999731 22 45545555443
No 12
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.40 E-value=7.1e-13 Score=97.44 Aligned_cols=67 Identities=27% Similarity=0.362 Sum_probs=53.7
Q ss_pred CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEec
Q psy3386 6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCL 73 (76)
Q Consensus 6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~~ 73 (76)
+....|.|.||+||..||++..|.|.|++++|++|.|+|.+|+||.+. .......|..+.+.++++.
T Consensus 133 ~~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~g~~I~L~F~~F~lE~~~-~~~~~~~C~~D~l~I~dG~ 199 (577)
T 4gz9_A 133 YTAPTGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQDS-NPPGGMFCRYDRLEIWDGF 199 (577)
T ss_dssp ECSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCCC-SCSTTCCCCSSEEEEESSS
T ss_pred ecCCCccccCCCCCCCCCCCceEEEEEEECCCCEEEEEEEEEEeeecC-CCCCCCccCccEEEEEcCC
Confidence 346789999999999999999999999999999999999999999731 0111234777777766654
No 13
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}
Probab=99.39 E-value=8.2e-13 Score=94.05 Aligned_cols=58 Identities=16% Similarity=0.355 Sum_probs=49.6
Q ss_pred ccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEe
Q psy3386 8 HRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKC 72 (76)
Q Consensus 8 ~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~ 72 (76)
...|.|.||+||+.||++..|.|.|++++|++|+|+|..|+||. .. .|..+.+..+++
T Consensus 355 ~~~G~i~Sp~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~f~le~----~~---~C~~D~l~i~dg 412 (457)
T 3kq4_B 355 QTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLEH----HI---NCSTDYLELYDG 412 (457)
T ss_dssp CSSEEEECTTTTSCCCSSCEEEEEEECSTTCCCEEEEEEEECCC----CT---TTTSSEEEEEET
T ss_pred ceeeEEecCCCCccCCCCCceEEEEEcCCCCEEEEEEeEEEEcc----CC---CCCceEEEEEeC
Confidence 35699999999999999999999999999999999999999996 22 466666666554
No 14
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=92.74 Aligned_cols=61 Identities=23% Similarity=0.374 Sum_probs=52.6
Q ss_pred CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEec
Q psy3386 6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCL 73 (76)
Q Consensus 6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~~ 73 (76)
.....|.|+||+||..||++..|.|.|+++++++|+|+|.+|+||.+ ..|..+.+..+++.
T Consensus 238 ~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~~~~i~l~f~~f~le~~-------~~C~~D~l~i~dg~ 298 (457)
T 3kq4_B 238 LTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHH-------PNCTLDYLAVYDGP 298 (457)
T ss_dssp CCSSEEEEECTTTTSCCCSSCEEEEEECCSTTCCEEEEEEECCCCCC-------TTCCSSEEEEEESS
T ss_pred EccCcceeccCCCCCCCCCCCEEEEEEEeCCCCEEEEEEEeeeecCC-------CCcCCCEEEEEeCC
Confidence 45678999999999999999999999999999999999999999973 35666777666654
No 15
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.35 E-value=1.7e-12 Score=94.93 Aligned_cols=67 Identities=25% Similarity=0.321 Sum_probs=47.9
Q ss_pred CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEec
Q psy3386 6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCL 73 (76)
Q Consensus 6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~~ 73 (76)
+....|.|+||+||..||++..|.|.|+++++++|.|+|..|+||.+.. ...-..|..+.+..+++.
T Consensus 131 ~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~F~~f~le~~~~-~~~~~~C~~D~l~I~dg~ 197 (579)
T 2qqk_A 131 FTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPL-QVGEGDCKYDWLDIWDGI 197 (579)
T ss_dssp ECCSEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEEC--------------CCEEEEESSS
T ss_pred eccCCceecCCCCcccCCCCCeEEEEEEcCCCCEEEEEEEEEEeecccc-cccCCCCCCEEEEEEeCC
Confidence 4567899999999999999999999999999999999999999997310 001125666666666553
No 16
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.35 E-value=1.5e-12 Score=95.74 Aligned_cols=57 Identities=26% Similarity=0.450 Sum_probs=47.7
Q ss_pred cceEEECCCCCCCCCCCceeEEEEEeCCC-ceEEEEEe-EEEeCccccCCCcCCCCcceEEEeEEec
Q psy3386 9 RNGTFTSPNFPGLYPRDTECHYFFYGRND-ERIKLVFE-SFDDWWWIWLRQHCLGCKNFIIHSIKCL 73 (76)
Q Consensus 9 ~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g-~~I~L~F~-~f~le~~~~~~~~C~~c~~~~i~~~~~~ 73 (76)
..|.|+||+||..||++..|.|.|++|.+ ++|.|+|+ .|+||.. .|..+.+..+++.
T Consensus 17 ~~G~i~SPnyP~~Yp~n~~C~W~I~~p~~~~~I~L~F~~~f~le~~--------~C~~Dyl~I~dG~ 75 (577)
T 4gz9_A 17 NPGYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLEDR--------DCKYDYVEVIDGE 75 (577)
T ss_dssp SCEEEECTTTTTCCCSSCEEEEEEECSSTTCCEEEEECSCCBCCCG--------GGTSSEEEEEESS
T ss_pred CCEEEeCCCCCCCCCCCCeEEEEEEECCCCcEEEEEEEeeeeecCC--------CCCccEEEEEeCC
Confidence 46999999999999999999999999866 68999996 7999962 4666666666654
No 17
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.28 E-value=1.3e-11 Score=73.46 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=41.9
Q ss_pred CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEe
Q psy3386 6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKC 72 (76)
Q Consensus 6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~ 72 (76)
..+..|.|+|| ||++..|.|.|++++|++|+|+|.+|+|+ |..+.+..+++
T Consensus 10 l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l~-----------C~~D~l~I~dg 60 (109)
T 1spp_A 10 LTDDYGTIFTY-----KGPKTECVWTLQVDPKYKLLVSIPTLNLT-----------CGKEYVEVLEG 60 (109)
T ss_dssp EECSEEEEECC-----CSSCSEEEEEEECCTTSEEEEEEEEEECC-----------TTTEEEEEESS
T ss_pred EeCCcEEEeCC-----CCCCCcEEEEEEcCCCCEEEEEEeeeecc-----------CCCCEEEEEeC
Confidence 34567999998 88999999999999999999999999973 45555555544
No 18
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.28 E-value=1.5e-11 Score=73.79 Aligned_cols=40 Identities=8% Similarity=0.239 Sum_probs=36.2
Q ss_pred CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeC
Q psy3386 6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDW 50 (76)
Q Consensus 6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le 50 (76)
.....|.|+|| ||++..|.|.|++++|++|+|+|.+|+|+
T Consensus 13 l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l~ 52 (116)
T 1spp_B 13 IKDTSGSISNT-----DRQKNLCTWTILMKPDQKVRMAIPYLNLA 52 (116)
T ss_dssp ECCSEEEEECC-----SSCCSEEEEEEECCTTCEEEEEEEEEECC
T ss_pred EeCCceEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeCccc
Confidence 34567999998 88999999999999999999999999983
No 19
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.24 E-value=1.5e-11 Score=89.96 Aligned_cols=56 Identities=29% Similarity=0.547 Sum_probs=47.5
Q ss_pred cceEEECCCCCCCCCCCceeEEEEEeCC-CceEEEEEe-EEEeCccccCCCcCCCCcceEEEeEEe
Q psy3386 9 RNGTFTSPNFPGLYPRDTECHYFFYGRN-DERIKLVFE-SFDDWWWIWLRQHCLGCKNFIIHSIKC 72 (76)
Q Consensus 9 ~~G~i~SP~yP~~Yp~~~~C~W~I~~~~-g~~I~L~F~-~f~le~~~~~~~~C~~c~~~~i~~~~~ 72 (76)
..|.|+||+||..||++..|.|.|+++. +++|.|.|. .|+||.+ .|..+.+..+++
T Consensus 14 ~~G~i~SP~yP~~Yp~~~~C~w~I~~p~~~~~I~l~F~~~f~le~~--------~C~~D~l~i~dg 71 (579)
T 2qqk_A 14 DAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEKH--------DCKYDFIEIRDG 71 (579)
T ss_dssp SCEEEECTTTTSCCCSSCCEEEEEECSSTTSEEEEEECSCCBCCCT--------TSSSSEEEEEES
T ss_pred CCeEEeCCCCCCCCcCCCEEEEEEEECCCCcEEEEEEecccccccC--------CCCeeEEEEEeC
Confidence 5799999999999999999999999996 679999999 8999961 466566665554
No 20
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=99.23 E-value=2.5e-11 Score=83.93 Aligned_cols=46 Identities=37% Similarity=0.576 Sum_probs=41.9
Q ss_pred CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeE-EEeCc
Q psy3386 6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFES-FDDWW 51 (76)
Q Consensus 6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~-f~le~ 51 (76)
+....|.|+||+||..||++..|.|.|++++|++|.|+|.+ |++|.
T Consensus 171 ~~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~~~~e~ 217 (361)
T 4aqb_A 171 FTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIED 217 (361)
T ss_dssp BCSSEEEEESTTTTSCCCSSCEEEEEEECCTTCEEEEEECSCCBBCC
T ss_pred EeCCCcEEecCCCCCCCCCCceeeEEeeeccCcEEEEEEeecccccC
Confidence 45678999999999999999999999999999999999986 67775
No 21
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=99.22 E-value=4.8e-11 Score=71.26 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=35.6
Q ss_pred CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEe
Q psy3386 6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDD 49 (76)
Q Consensus 6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~l 49 (76)
.....|.|+|| ||++..|.|.|++++|++|+|+|.+|+|
T Consensus 14 l~~~~G~i~Sp-----y~~~~~C~w~I~~~~g~~I~l~f~~f~l 52 (114)
T 1sfp_A 14 LKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQL 52 (114)
T ss_dssp ECCSEEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEEC
T ss_pred EECCcEEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeeee
Confidence 34567999997 8889999999999999999999999997
Done!