RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3386
(76 letters)
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 51.9 bits (124), Expect = 8e-10
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 9 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
G SP +P YP D+E + + RIKL F F+
Sbjct: 8 MFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFN 47
Score = 46.9 bits (111), Expect = 5e-08
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 9 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDD 49
R G TSP+FP YP+ +EC Y + L FE D
Sbjct: 174 RTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFD 214
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease
M disulfide bond, glycoprotein, secreted, transport,
choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo
sapiens}
Length = 457
Score = 51.4 bits (123), Expect = 1e-09
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
+GTF SPN+P Y +EC+++ + +L F+ F
Sbjct: 242 SGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFH 280
Score = 50.3 bits (120), Expect = 3e-09
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 9 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
GT SP P +YP C + + + I L+FE+F
Sbjct: 8 STGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFH 47
Score = 44.1 bits (104), Expect = 4e-07
Identities = 8/48 (16%), Positives = 14/48 (29%)
Query: 1 MFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
G S +P Y + C++ + F +FD
Sbjct: 348 ENVVIVNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFD 395
Score = 42.6 bits (100), Expect = 2e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
GTFTSPNFP YP + EC Y R + I + F +F
Sbjct: 125 LGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFS 163
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein,
cell adhesion, extracellular matrix; 2.30A {Homo
sapiens}
Length = 149
Score = 49.3 bits (118), Expect = 2e-09
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 9 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
F SP FP Y + C++ + +RI L F FD
Sbjct: 14 PKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFD 53
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB
domain, EGF like domain., hydrolase, sugar binding
protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP:
b.23.1.1 b.23.1.1 g.3.11.1
Length = 286
Score = 50.7 bits (121), Expect = 2e-09
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
G SP FP Y + + R++L F F+
Sbjct: 8 FGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFN 46
Score = 48.0 bits (114), Expect = 2e-08
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 9 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVF-ESFD 48
R+G +SP +P YP+ + C Y I L F ESFD
Sbjct: 173 RSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFD 213
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 49.4 bits (118), Expect = 3e-09
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
G SPN+P YP + E + I L F D
Sbjct: 5 YGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLD 43
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 50.0 bits (119), Expect = 3e-09
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
G SP +P YP D+E + + RIKL F F+
Sbjct: 9 FGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFN 47
Score = 47.3 bits (112), Expect = 3e-08
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 9 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDD 49
R G TSP+FP YP+ +EC Y + L FE D
Sbjct: 174 RTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFD 214
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding
site, complex with ethylamine, COMP protein, lectin
pathway of complement; 1.45A {Rattus norvegicus} PDB:
3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Length = 115
Score = 47.7 bits (114), Expect = 6e-09
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 9 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDD 49
R GT TSP++P YP+ +EC Y + L FE D
Sbjct: 12 RTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFD 52
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 48.0 bits (114), Expect = 1e-08
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
G SP FPG Y D E + R++L F FD
Sbjct: 12 FGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFD 50
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 48.5 bits (115), Expect = 1e-08
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
+G SP FP YP EC Y + I L FESFD
Sbjct: 19 SGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFD 57
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding
domain, developmental protein, differentiation,
glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Length = 460
Score = 48.2 bits (114), Expect = 2e-08
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
NGT SP FP YP + +C + + I L F FD
Sbjct: 16 NGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFD 54
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 46.9 bits (111), Expect = 4e-08
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
NGT SP FP YP + +C + + I L F FD
Sbjct: 135 NGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFD 173
Score = 44.6 bits (105), Expect = 3e-07
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRND-ERIKLVFESFDD 49
G TSP +P YP C + Y ++I L F +
Sbjct: 15 AGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFE 55
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex
(seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP:
b.23.1.1
Length = 109
Score = 37.4 bits (87), Expect = 4e-05
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
GT + P TEC + ++ + + +
Sbjct: 14 YGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLN 47
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal
fluid protein, CUB domain, X-RAY growth factor; 1.90A
{Bos taurus} SCOP: b.23.1.1
Length = 114
Score = 35.4 bits (82), Expect = 3e-04
Identities = 4/39 (10%), Positives = 12/39 (30%), Gaps = 5/39 (12%)
Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
+G + Y T C + + +++ +
Sbjct: 18 SGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQ 51
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma
proteins, spermadhesins, CUB domain architecture,
complex (seminal plasma protein/SPP); 2.40A {Sus
scrofa} SCOP: b.23.1.1
Length = 116
Score = 35.1 bits (81), Expect = 4e-04
Identities = 3/39 (7%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
+G+ ++ + C + + D+++++ +
Sbjct: 17 SGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLN 50
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 28.5 bits (64), Expect = 0.12
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 19 PGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSI 70
P P D + + + G ++ ++ E + G + ++HS+
Sbjct: 85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDF---------GSIDILVHSL 127
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A*
2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A*
2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A*
3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 27.2 bits (61), Expect = 0.36
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 6/35 (17%)
Query: 36 NDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSI 70
N+E + + + + ++HSI
Sbjct: 67 NEEHLASLAGRVTEAIGAGNKLD------GVVHSI 95
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 26.5 bits (58), Expect = 0.94
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 12 TFTSPNFPGLYPRDTECHYFFYGR 35
T+T+ +P P + G+
Sbjct: 346 TWTNKKWPHAAPEGKTLLRAYVGK 369
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 26.1 bits (57), Expect = 1.1
Identities = 4/24 (16%), Positives = 5/24 (20%)
Query: 12 TFTSPNFPGLYPRDTECHYFFYGR 35
S FP + G
Sbjct: 352 IHASTTFPFRAEGGRVLYSCMVGG 375
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped
structure, DNA binding domain, regulatory domain,
DNA-binding; 2.70A {Mycobacterium tuberculosis}
Length = 303
Score = 25.7 bits (57), Expect = 1.3
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 42 LVFESFDDWWWIWLRQHC 59
L + D + +R+
Sbjct: 193 LAWNRDDGLQDMLVRKAF 210
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A
2kr3_A
Length = 65
Score = 24.6 bits (54), Expect = 1.6
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 35 RNDERIKLVFESFDDWWWIWLRQHCLGCKN 64
+ + + L+ + DWW + ++ G
Sbjct: 21 KKGDILTLLNSTNKDWWKVEVKITVNGKTY 50
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S
ribosomal protein L3; mitochondrial ribosome, large
ribosomal subunit, ribosomal R ribosome; 12.10A {Bos
taurus} PDB: 3iy9_D
Length = 175
Score = 24.5 bits (54), Expect = 3.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 5 TGGHRNGTFTSPNFPG 20
TG R+G+ SP + G
Sbjct: 37 TGRARHGSIRSPLWRG 52
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino]
imidazole-4-carboxamide...; TIM alpha/beta barrel; HET:
CIT; 1.30A {Saccharomyces cerevisiae}
Length = 260
Score = 24.8 bits (54), Expect = 3.6
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 49 DWWWIWLRQHCLGCKNFIIHSI 70
+ R+ F+IH+
Sbjct: 158 ELNADTFRELRKYTNEFLIHAA 179
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 23.5 bits (51), Expect = 5.4
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 35 RNDERIKLVFESFDDWWW 52
+ + + L+ + DWW
Sbjct: 19 KKGDILTLLNSTNKDWWK 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.2 bits (52), Expect = 5.6
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 10/37 (27%)
Query: 34 GRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSI 70
G+ D+ + L F+ L + IH++
Sbjct: 78 GQFDQVLNLCLTEFE--------NCYLEGND--IHAL 104
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 24.0 bits (52), Expect = 7.2
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 22 YPRDTECHYFFYGRNDERIKLVFESFDDWW 51
+ T + YG D L+ + F+D
Sbjct: 92 VLKYTNVYRMVYGEADYLPGLIVDRFNDIA 121
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human,
immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Length = 232
Score = 23.6 bits (52), Expect = 8.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 46 SFDDWWWIWLRQ 57
SF D++W W+RQ
Sbjct: 28 SFSDYYWSWIRQ 39
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 22.5 bits (49), Expect = 8.9
Identities = 2/15 (13%), Positives = 9/15 (60%)
Query: 38 ERIKLVFESFDDWWW 52
E+++++ + + W
Sbjct: 28 EKLRVLGYNHNGEWC 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.145 0.543
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,275,986
Number of extensions: 61628
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 43
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)