RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3386
         (76 letters)



>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 117

 Score = 41.0 bits (95), Expect = 9e-07
 Identities = 12/50 (24%), Positives = 16/50 (32%)

Query: 11 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCL 60
          G   SPN+P  YP + E  +         I L F   D           +
Sbjct: 6  GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSV 55


>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated
          serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 121

 Score = 37.5 bits (86), Expect = 2e-05
 Identities = 14/54 (25%), Positives = 19/54 (35%)

Query: 11 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKN 64
          G   SP FPG Y  D E  +        R++L F  FD           +   +
Sbjct: 11 GRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSS 64


>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated
          serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 108

 Score = 35.7 bits (81), Expect = 7e-05
 Identities = 18/66 (27%), Positives = 21/66 (31%)

Query: 11 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSI 70
          G   SP FP  YP   EC Y  +      I L FESFD               + +    
Sbjct: 1  GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWD 60

Query: 71 KCLSSG 76
               G
Sbjct: 61 GFPDVG 66


>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated
          serine protease 2, MASP2 {Rat (Rattus norvegicus)
          [TaxId: 10116]}
          Length = 114

 Score = 34.1 bits (77), Expect = 3e-04
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 9  RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVF-ESFDDWWWIWLRQHCLGCKNFII 67
          R+G  +SP +P  YP+ + C Y         I L F ESFD       +      K    
Sbjct: 9  RSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSLKIQTD 68

Query: 68 HSIKCLSSG 76
                  G
Sbjct: 69 KREYGPFCG 77


>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase
          CodA {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 130

 Score = 24.4 bits (52), Expect = 1.4
 Identities = 6/44 (13%), Positives = 8/44 (18%)

Query: 27 ECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSI 70
            H            L  E           + C  C   I  + 
Sbjct: 50 TAHAEIAVIRMACEALGQERLPGADLYVTLEPCTMCAAAISFAR 93


>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
           [TaxId: 7054]}
          Length = 541

 Score = 24.5 bits (52), Expect = 1.9
 Identities = 6/19 (31%), Positives = 8/19 (42%)

Query: 24  RDTECHYFFYGRNDERIKL 42
            D + H+F   R    IK 
Sbjct: 423 WDEDEHFFIVDRLKSLIKY 441


>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I
          {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 109

 Score = 23.0 bits (48), Expect = 3.8
 Identities = 8/63 (12%), Positives = 16/63 (25%), Gaps = 5/63 (7%)

Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHS 69
           GT  +   P      TEC +        ++ +   + +        +   G        
Sbjct: 14 YGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLNLTCGKEYVEVLEGAPGSKSLG 68

Query: 70 IKC 72
            C
Sbjct: 69 KFC 71


>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 194

 Score = 23.2 bits (50), Expect = 4.4
 Identities = 4/23 (17%), Positives = 8/23 (34%)

Query: 24 RDTECHYFFYGRNDERIKLVFES 46
          RD E +    G       ++ + 
Sbjct: 46 RDVEVYLLLLGPPSPPKSILIKG 68


>d2gpia1 d.354.1.1 (A:1-90) Hypothetical protein Shew3726
          {Shewanella loihica [TaxId: 359303]}
          Length = 90

 Score = 22.8 bits (49), Expect = 4.5
 Identities = 4/13 (30%), Positives = 7/13 (53%)

Query: 45 ESFDDWWWIWLRQ 57
          E+FD    I + +
Sbjct: 76 EAFDVQGHIQVER 88


>d1uq5a_ d.165.1.1 (A:) Ricin A-chain {Castor bean (Ricinus
           communis) [TaxId: 3988]}
          Length = 263

 Score = 23.0 bits (49), Expect = 4.9
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 24  RDTECHYFFYGRNDERIKLVFESFDD 49
           R     YFF+  N E  + +   F D
Sbjct: 81  RAGNSAYFFHPDNQEDAEAITHLFTD 106


>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2
          (GRB2), N- and C-terminal domains {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 56

 Score = 21.2 bits (45), Expect = 9.9
 Identities = 4/18 (22%), Positives = 10/18 (55%)

Query: 35 RNDERIKLVFESFDDWWW 52
          +  + +K++ E  D  W+
Sbjct: 20 KRGDILKVLNEECDQNWY 37


>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus
           subtilis [TaxId: 1423]}
          Length = 152

 Score = 21.9 bits (46), Expect = 9.9
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 24  RDTECHYFFYGRNDERIKLVFESFDDW 50
           +D EC    + R       V +SF ++
Sbjct: 106 KDGECPVVEWDRVIGYQDTVADSFIEF 132


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.145    0.543 

Gapped
Lambda     K      H
   0.267   0.0449    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 394,317
Number of extensions: 15850
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 32
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.6 bits)