BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3389
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13826|CSP_PLAVS Circumsporozoite protein (Fragment) OS=Plasmodium vivax (strain
Salvador I) PE=3 SV=1
Length = 343
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A+ +P +AD +P+ +A +P+ + D +P+ +AD +P
Sbjct: 64 RADGQPAGDRADGQPAGDRADGQPAGDRADGQPAGDRAAGQPAGDRADGQPAGDRADGQP 123
Query: 88 STYKADPRPIIYKADPRPS 106
+ +AD +P +AD +P+
Sbjct: 124 AGDRADGQPAGDRADGQPA 142
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A+ +P +A +P+ +AD +P+ + D +P+ +AD +P
Sbjct: 73 RADGQPAGDRADGQPAGDRADGQPAGDRAAGQPAGDRADGQPAGDRADGQPAGDRADGQP 132
Query: 88 STYKADPRPIIYKADPRPS 106
+ +AD +P +A +P+
Sbjct: 133 AGDRADGQPAGDRAAGQPA 151
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A +P +AD +P+ +AD +P+ + D +P+ +AD +P
Sbjct: 82 RADGQPAGDRADGQPAGDRAAGQPAGDRADGQPAGDRADGQPAGDRADGQPAGDRADGQP 141
Query: 88 STYKADPRPIIYKADPRPS 106
+ +A +P +A +P+
Sbjct: 142 AGDRAAGQPAGDRAAGQPA 160
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 46/79 (58%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +A +P +A+ +P +AD +P+ +AD +P+ + D +P+ +A +P
Sbjct: 91 RADGQPAGDRAAGQPAGDRADGQPAGDRADGQPAGDRADGQPAGDRADGQPAGDRAAGQP 150
Query: 88 STYKADPRPIIYKADPRPS 106
+ +A +P +AD +P+
Sbjct: 151 AGDRAAGQPAGDRADGQPA 169
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 46/79 (58%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A+ +P +AD +P+ +A +P+ + +P+ +AD +P
Sbjct: 109 RADGQPAGDRADGQPAGDRADGQPAGDRADGQPAGDRAAGQPAGDRAAGQPAGDRADGQP 168
Query: 88 STYKADPRPIIYKADPRPS 106
+ +A +P +AD +P+
Sbjct: 169 AGDRAAGQPAGDRADGQPA 187
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A +P +A +P+ +AD +P+ + +P+ +AD +P
Sbjct: 127 RADGQPAGDRADGQPAGDRAAGQPAGDRAAGQPAGDRADGQPAGDRAAGQPAGDRADGQP 186
Query: 88 STYKADPRPIIYKADPRPS 106
+ +A +P +AD +P+
Sbjct: 187 AGDRAAGQPAGDRADGQPA 205
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 32 RPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPSTYK 91
+P +AD +P +A+ +P +AD +P+ +AD +P+ + +P+ +A +P+ +
Sbjct: 104 QPAGDRADGQPAGDRADGQPAGDRADGQPAGDRADGQPAGDRAAGQPAGDRAAGQPAGDR 163
Query: 92 ADPRPIIYKADPRPS 106
AD +P +A +P+
Sbjct: 164 ADGQPAGDRAAGQPA 178
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 45/79 (56%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A+ +P +A +P+ +A +P+ + D +P+ +A +P
Sbjct: 118 RADGQPAGDRADGQPAGDRADGQPAGDRAAGQPAGDRAAGQPAGDRADGQPAGDRAAGQP 177
Query: 88 STYKADPRPIIYKADPRPS 106
+ +AD +P +A +P+
Sbjct: 178 AGDRADGQPAGDRAAGQPA 196
Score = 37.0 bits (84), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 44/79 (55%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +A +P +A +P +AD +P+ +A +P+ + D +P+ +A +P
Sbjct: 136 RADGQPAGDRAAGQPAGDRAAGQPAGDRADGQPAGDRAAGQPAGDRADGQPAGDRAAGQP 195
Query: 88 STYKADPRPIIYKADPRPS 106
+ +AD +P +A +P+
Sbjct: 196 AGDRADGQPAGDRAAGQPA 214
>sp|Q25460|FP1_MYTED Adhesive plaque matrix protein (Fragment) OS=Mytilus edulis GN=FP1
PE=1 SV=1
Length = 875
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 60/114 (52%), Gaps = 19/114 (16%)
Query: 13 ITYNLTRQIRDLSY---YKADPR-PIIYKADPR-PIIYKANPR-PIIYKADPR-PSTYKA 65
TY T + + +SY YKA P P YKA P P YKA P P YKA P P TYKA
Sbjct: 529 TTYPPTYKPK-ISYPPTYKAKPSYPATYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKA 587
Query: 66 DPR-------PSTYKVDPR-PSTYKADPR-PSTYKADPR-PIIYKADPR-PSTY 108
P PSTYK P P TYKA P P TYKA P P YKA P PSTY
Sbjct: 588 KPSYKAKPTYPSTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPTYPSTY 641
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 27 YKADPR-PIIYKADPR-PIIYKANPR-PIIYKADPR-PSTYKADPRPSTYKVDPR-PSTY 81
YKA P P YKA P P YKA P P YKA P P TYKA P TYK P PSTY
Sbjct: 301 YKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKP---TYKAKPTYPSTY 357
Query: 82 KADPR-PSTYKADPR-PIIYKADP 103
KA P P TYKA P P YKA P
Sbjct: 358 KAKPSYPPTYKAKPSYPPTYKAKP 381
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 52/98 (53%), Gaps = 13/98 (13%)
Query: 23 DLSYYKADPR-PIIYKADPR-PIIYKANPR-PIIYKADPRPSTYKADPR-PSTYKVDPRP 78
+ S YKA P P YKA P P YKA P P YKA P TYKA P PSTYK P
Sbjct: 693 NPSTYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKP---TYKAKPTYPSTYKAKP-- 747
Query: 79 STYKADPR-PSTYKADPR-PIIYKADPR-PSTYGECSV 113
TYKA P P TYKA P P YK P P TY S+
Sbjct: 748 -TYKAKPTYPPTYKAKPSYPPTYKPKPSYPPTYKSKSI 784
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 60/116 (51%), Gaps = 21/116 (18%)
Query: 4 ARRELKSRPITYNLTRQIRDLSY---YKADPR-PIIYKADPR-------PIIYKANPR-P 51
A+ K++P TY T + + SY YKA P P YKA P P YKA P P
Sbjct: 343 AKPTYKAKP-TYPSTYKAKP-SYPPTYKAKPSYPPTYKAKPTYKAKPSYPPTYKAKPSYP 400
Query: 52 IIYKADPR-PSTYKADPRPSTYKVDPR-PSTYKADPR-PSTYKADPR-PIIYKADP 103
YKA P P TYKA P TYK P PSTYKA P P +YKA P P YKA P
Sbjct: 401 PTYKAKPSYPPTYKAKP---TYKAKPTYPSTYKAKPSYPPSYKAKPSYPPTYKAKP 453
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 47/94 (50%), Gaps = 20/94 (21%)
Query: 27 YKADPR-PIIYKADPR-----------PIIYKANPR-PIIYKADPR-PSTYKADPRPSTY 72
YKA P P YKA P P YKA P P YKA P P TYKA P TY
Sbjct: 631 YKAKPTYPSTYKAKPSYPPTYKPKISYPPTYKAKPSYPPTYKAKPSYPPTYKAKP---TY 687
Query: 73 KVDP-RPSTYKADPR-PSTYKADPR-PIIYKADP 103
K P PSTYKA P P TYKA P P YKA P
Sbjct: 688 KAKPTNPSTYKAKPSYPPTYKAKPSYPPTYKAKP 721
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 56/107 (52%), Gaps = 21/107 (19%)
Query: 4 ARRELKSRPITYNLTRQIRDLSY---YKADPRPIIYKADPR-PIIYKANPR-PIIYKADP 58
A+ K++P TY T + + SY YKA P YKA P P YKA P P YKA P
Sbjct: 203 AKPTYKAKP-TYPSTYKAKP-SYPPTYKAKP---TYKAKPSYPPTYKAKPSYPPTYKAKP 257
Query: 59 R-PSTYKADPRPSTYKVDPRPSTYKADPRPSTYKADPR-PIIYKADP 103
P TYKA P TYK P TYKA P TYKA P P YKA P
Sbjct: 258 SYPPTYKAKP---TYKAKP---TYKAKP---TYKAKPSYPPTYKAKP 295
>sp|Q03110|CSP_PLASI Circumsporozoite protein OS=Plasmodium simium GN=CS PE=3 SV=1
Length = 386
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A+ +P +AD +P+ +AD +P+ + +P+ +AD +P
Sbjct: 98 RADGQPAGDRADGQPAGDRADGQPAGDRADGQPAGDRADGQPAGDRAAGQPAGDRADGQP 157
Query: 88 STYKADPRPIIYKADPRPS 106
+ +AD +P +A +P+
Sbjct: 158 AGDRADGQPAGDRAAGQPA 176
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A +P +AD +P+ +AD +P+ + +P+ +A +P
Sbjct: 125 RADGQPAGDRADGQPAGDRAAGQPAGDRADGQPAGDRADGQPAGDRAAGQPAGDRAAGQP 184
Query: 88 STYKADPRPIIYKADPRPS 106
+ +AD +P +AD +P+
Sbjct: 185 AGDRADGQPAGDRADGQPA 203
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 46/79 (58%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A+ +P +AD +P+ +A +P+ + D +P+ +AD +P
Sbjct: 107 RADGQPAGDRADGQPAGDRADGQPAGDRADGQPAGDRAAGQPAGDRADGQPAGDRADGQP 166
Query: 88 STYKADPRPIIYKADPRPS 106
+ +A +P +A +P+
Sbjct: 167 AGDRAAGQPAGDRAAGQPA 185
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 46/79 (58%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A+ +P +A +P+ +AD +P+ + D +P+ +A +P
Sbjct: 116 RADGQPAGDRADGQPAGDRADGQPAGDRAAGQPAGDRADGQPAGDRADGQPAGDRAAGQP 175
Query: 88 STYKADPRPIIYKADPRPS 106
+ +A +P +AD +P+
Sbjct: 176 AGDRAAGQPAGDRADGQPA 194
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 46/79 (58%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +A +P +A+ +P +AD +P+ +A +P+ + +P+ +AD +P
Sbjct: 134 RADGQPAGDRAAGQPAGDRADGQPAGDRADGQPAGDRAAGQPAGDRAAGQPAGDRADGQP 193
Query: 88 STYKADPRPIIYKADPRPS 106
+ +AD +P +AD +P+
Sbjct: 194 AGDRADGQPAGDRADGQPA 212
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A +P +A +P+ +AD +P+ + D +P+ +AD +P
Sbjct: 152 RADGQPAGDRADGQPAGDRAAGQPAGDRAAGQPAGDRADGQPAGDRADGQPAGDRADGQP 211
Query: 88 STYKADPRPIIYKADPRPS 106
+ +A +P +A +P+
Sbjct: 212 AGDRAAGQPAGDRAAGQPA 230
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 32 RPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPSTYK 91
+P +AD +P +A+ +P +A +P+ +A +P+ + D +P+ +AD +P+ +
Sbjct: 147 QPAGDRADGQPAGDRADGQPAGDRAAGQPAGDRAAGQPAGDRADGQPAGDRADGQPAGDR 206
Query: 92 ADPRPIIYKADPRPS 106
AD +P +A +P+
Sbjct: 207 ADGQPAGDRAAGQPA 221
Score = 37.4 bits (85), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 44/79 (55%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +A +P +A +P +AD +P+ +AD +P+ + D +P+ +A +P
Sbjct: 161 RADGQPAGDRAAGQPAGDRAAGQPAGDRADGQPAGDRADGQPAGDRADGQPAGDRAAGQP 220
Query: 88 STYKADPRPIIYKADPRPS 106
+ +A +P +A +P+
Sbjct: 221 AGDRAAGQPAGDRAAGQPA 239
>sp|P08677|CSP_PLAVB Circumsporozoite protein OS=Plasmodium vivax (strain Belem) PE=3
SV=2
Length = 378
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A+ +P +A +P+ +AD +P+ + D +P+ +AD +P
Sbjct: 98 RADGQPAGDRADGQPAGDRADGQPAGDRAAGQPAGDRADGQPAGDRADGQPAGDRADGQP 157
Query: 88 STYKADPRPIIYKADPRPS 106
+ +AD +P +A +P+
Sbjct: 158 AGDRADGQPAGDRAAGQPA 176
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A +P +AD +P+ +AD +P+ + D +P+ +AD +P
Sbjct: 107 RADGQPAGDRADGQPAGDRAAGQPAGDRADGQPAGDRADGQPAGDRADGQPAGDRADGQP 166
Query: 88 STYKADPRPIIYKADPRPS 106
+ +A +P +A +P+
Sbjct: 167 AGDRAAGQPAGDRAAGQPA 185
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 46/79 (58%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +A +P +A+ +P +AD +P+ +AD +P+ + D +P+ +A +P
Sbjct: 116 RADGQPAGDRAAGQPAGDRADGQPAGDRADGQPAGDRADGQPAGDRADGQPAGDRAAGQP 175
Query: 88 STYKADPRPIIYKADPRPS 106
+ +A +P +AD +P+
Sbjct: 176 AGDRAAGQPAGDRADGQPA 194
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 46/79 (58%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A+ +P +AD +P+ +A +P+ + +P+ +AD +P
Sbjct: 134 RADGQPAGDRADGQPAGDRADGQPAGDRADGQPAGDRAAGQPAGDRAAGQPAGDRADGQP 193
Query: 88 STYKADPRPIIYKADPRPS 106
+ +A +P +AD +P+
Sbjct: 194 AGDRAAGQPAGDRADGQPA 212
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A +P +A +P+ +AD +P+ + +P+ +AD +P
Sbjct: 152 RADGQPAGDRADGQPAGDRAAGQPAGDRAAGQPAGDRADGQPAGDRAAGQPAGDRADGQP 211
Query: 88 STYKADPRPIIYKADPRPS 106
+ +A +P +AD +P+
Sbjct: 212 AGDRAAGQPAGDRADGQPA 230
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 32 RPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPSTYK 91
+P +AD +P +A+ +P +AD +P+ +AD +P+ + +P+ +A +P+ +
Sbjct: 129 QPAGDRADGQPAGDRADGQPAGDRADGQPAGDRADGQPAGDRAAGQPAGDRAAGQPAGDR 188
Query: 92 ADPRPIIYKADPRPS 106
AD +P +A +P+
Sbjct: 189 ADGQPAGDRAAGQPA 203
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 45/79 (56%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +AD +P +A+ +P +A +P+ +A +P+ + D +P+ +A +P
Sbjct: 143 RADGQPAGDRADGQPAGDRADGQPAGDRAAGQPAGDRAAGQPAGDRADGQPAGDRAAGQP 202
Query: 88 STYKADPRPIIYKADPRPS 106
+ +AD +P +A +P+
Sbjct: 203 AGDRADGQPAGDRAAGQPA 221
Score = 37.0 bits (84), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 44/79 (55%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+AD +P +A +P +A +P +AD +P+ +A +P+ + D +P+ +A +P
Sbjct: 161 RADGQPAGDRAAGQPAGDRAAGQPAGDRADGQPAGDRAAGQPAGDRADGQPAGDRAAGQP 220
Query: 88 STYKADPRPIIYKADPRPS 106
+ +AD +P +A +P+
Sbjct: 221 AGDRADGQPAGDRAAGQPA 239
>sp|C0ZYA5|IF2_RHOE4 Translation initiation factor IF-2 OS=Rhodococcus erythropolis
(strain PR4 / NBRC 100887) GN=infB PE=3 SV=1
Length = 981
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 41 RPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPSTYKADPRP 96
RP + PRP + PRP+ + PRP+ + PRP + PRPS PRP
Sbjct: 211 RPAPGQGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPPAGQGGPRPSPGSMPPRP 266
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 46 KANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPSTYKADPRPIIYKADPRP 105
+ RP + PRP+ + PRP+ + PRP+ + PRP + PRP PRP
Sbjct: 207 QGGSRPAPGQGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPPAGQGGPRPSPGSMPPRP 266
Query: 106 S 106
+
Sbjct: 267 N 267
Score = 33.5 bits (75), Expect = 0.85, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 68 RPSTYKVDPRPSTYKADPRPSTYKADPRPIIYKADPRPSTYGECSVKSPSPKTL 121
RP+ + PRP+ + PRP+ + PRP + PRP G+ + PSP ++
Sbjct: 211 RPAPGQGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPPA-GQGGPR-PSPGSM 262
>sp|Q0S219|IF2_RHOSR Translation initiation factor IF-2 OS=Rhodococcus sp. (strain RHA1)
GN=infB PE=3 SV=1
Length = 980
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 46 KANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPSTYKADPRP 96
+ PRP + PRP+ + PRP+ + PRP+ + PRPS PRP
Sbjct: 219 QGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPSPGSMPPRP 269
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 37 KADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPS 88
+ PRP + PRP + PRP+ + PRP+ + PRPS PRP+
Sbjct: 219 QGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPSPGSMPPRPN 270
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 55 KADPRPSTYKADPRPSTYKVDPRPSTYKADPRPSTYKADPRPIIYKADPRPS 106
+ PRP+ + PRP+ + PRP+ + PRP+ + PRP PRP+
Sbjct: 219 QGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPSPGSMPPRPN 270
Score = 35.0 bits (79), Expect = 0.31, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPS 70
+ PRP + PRP + PRP + PRPS PRP+
Sbjct: 228 QGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPSPGSMPPRPN 270
>sp|C1B313|IF2_RHOOB Translation initiation factor IF-2 OS=Rhodococcus opacus (strain
B4) GN=infB PE=3 SV=1
Length = 974
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 46 KANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPSTYKADPRP 96
+ PRP + PRP+ + PRP+ + PRP+ + PRPS PRP
Sbjct: 213 QGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPSPGSMPPRP 263
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 37 KADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPS 88
+ PRP + PRP + PRP+ + PRP+ + PRPS PRP+
Sbjct: 213 QGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPSPGSMPPRPN 264
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 55 KADPRPSTYKADPRPSTYKVDPRPSTYKADPRPSTYKADPRPIIYKADPRPS 106
+ PRP+ + PRP+ + PRP+ + PRP+ + PRP PRP+
Sbjct: 213 QGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPSPGSMPPRPN 264
Score = 35.0 bits (79), Expect = 0.31, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPS 70
+ PRP + PRP + PRP + PRPS PRP+
Sbjct: 222 QGGPRPAPGQGGPRPAPGQGGPRPAPGQGGPRPSPGSMPPRPN 264
>sp|P0DI83|NARR_HUMAN Ras-related protein Rab-34, isoform NARR OS=Homo sapiens GN=RAB34
PE=1 SV=1
Length = 198
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%)
Query: 28 KADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
+ PRP + PR + +PRP + + P P+ A PRP T P P PRP
Sbjct: 58 EESPRPRVIFGTPRARVILGSPRPRVIVSSPWPAVVVASPRPRTPVGSPWPRVVVGTPRP 117
Query: 88 STYKADPRPIIYKADP 103
PR + ADP
Sbjct: 118 RVIVGSPRARVADADP 133
Score = 34.7 bits (78), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 31 PRP-IIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPST 89
PRP + + PRP + PR + PRP + P P+ PRP T P P
Sbjct: 51 PRPQLAAEESPRPRVIFGTPRARVILGSPRPRVIVSSPWPAVVVASPRPRTPVGSPWPRV 110
Query: 90 YKADPRPIIYKADPR 104
PRP + PR
Sbjct: 111 VVGTPRPRVIVGSPR 125
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 47/120 (39%), Gaps = 8/120 (6%)
Query: 31 PRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPS-TYKVDPRPSTYKADPRPST 89
PR I+ PR I+ PR I+ A RP PRP + PRP PR
Sbjct: 16 PRVIVGTIRPRVIVGTIRPRVIVGSARARPPP-DGTPRPQLAAEESPRPRVIFGTPRARV 74
Query: 90 YKADPRPIIYKADPRPSTYGECSVKSPSPKTLAEFYSIVTFFLSSTHHTKFLFGLAAARV 149
PRP + + P P+ V SP P+T S + T + + G ARV
Sbjct: 75 ILGSPRPRVIVSSPWPAVV----VASPRPRT--PVGSPWPRVVVGTPRPRVIVGSPRARV 128
>sp|O00267|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1
SV=1
Length = 1087
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 56 ADPRP-STYKADPRPSTY-KVDPRPSTYKADPRPSTYKADPRPIIYKADPRPSTYG 109
A P P +Y+ P P +Y +V P P+ Y+ P++Y P P+ Y+A P PS G
Sbjct: 894 AAPSPQGSYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVG 949
>sp|O55201|SPT5H_MOUSE Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1
SV=1
Length = 1082
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 56 ADPRP-STYKADPRPSTY-KVDPRPSTYKADPRPSTYKADPRPIIYKADPRPSTYG 109
A P P +Y+ P P +Y +V P P+ Y+ P++Y P P+ Y+A P PS G
Sbjct: 888 AAPSPQGSYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVG 943
>sp|Q5R405|SPT5H_PONAB Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2
SV=1
Length = 1083
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 56 ADPRP-STYKADPRPSTY-KVDPRPSTYKADPRPSTYKADPRPIIYKADPRPSTYG 109
A P P +Y+ P P +Y +V P P+ Y+ P++Y P P+ Y+A P PS G
Sbjct: 890 AAPSPQGSYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVG 945
>sp|Q9DDT5|SPT5H_DANRE Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1
SV=1
Length = 1084
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 56 ADPRP-STYKADPRPSTY-KVDPRPSTYKADPRPSTYKADPRPIIYKADPRPSTYG 109
A P P +Y+ P P +Y +V P P Y+ P++Y P P+ Y+A P PS G
Sbjct: 892 AAPSPQGSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVG 947
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 25 SYYKADPRPIIYKADPRPIIYKANPRPIIYKADPRPS 61
SY++ P P+ Y+ P Y P P+ Y+A P PS
Sbjct: 908 SYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPS 944
>sp|Q99PG2|OGFR_MOUSE Opioid growth factor receptor OS=Mus musculus GN=Ogfr PE=2 SV=1
Length = 633
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 31/75 (41%)
Query: 30 DPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPST 89
DP+ + DP+ + +P+ + DP+ DP+ DP+ DP+
Sbjct: 506 DPKGQVEPEDPKGQVGPEDPKGQVGPEDPKGQVGPEDPKSQVGPEDPKSQVEPEDPKSQV 565
Query: 90 YKADPRPIIYKADPR 104
DP+ + DP+
Sbjct: 566 EPEDPKSQVEPEDPK 580
Score = 34.3 bits (77), Expect = 0.52, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 31/75 (41%)
Query: 30 DPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPST 89
DP+ + DP+ + +P+ + DP+ DP+ DP+ DP+
Sbjct: 497 DPKSQVGPEDPKGQVEPEDPKGQVGPEDPKGQVGPEDPKGQVGPEDPKSQVGPEDPKSQV 556
Query: 90 YKADPRPIIYKADPR 104
DP+ + DP+
Sbjct: 557 EPEDPKSQVEPEDPK 571
Score = 33.9 bits (76), Expect = 0.66, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 30 DPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPST 89
DP+ + DP+ + +P+ + DP+ DP+ DP+ DP+
Sbjct: 470 DPKSQVGPEDPKSQVGPEDPKSQVGPEDPKSQVGPEDPKGQVEPEDPKGQVGPEDPKGQV 529
Query: 90 YKADPRPIIYKADPRPSTYGE---CSVKSPSPKTLAE 123
DP+ + DP+ E V+ PK+ E
Sbjct: 530 GPEDPKGQVGPEDPKSQVGPEDPKSQVEPEDPKSQVE 566
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 31/81 (38%)
Query: 30 DPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPST 89
DP+ + DP+ + +P+ + DP+ DP+ DP+ DP+
Sbjct: 524 DPKGQVGPEDPKGQVGPEDPKSQVGPEDPKSQVEPEDPKSQVEPEDPKSQVEPEDPKSQV 583
Query: 90 YKADPRPIIYKADPRPSTYGE 110
DP+ + + GE
Sbjct: 584 GPEDPQSQVGPEQAASKSLGE 604
>sp|A5GF86|IF2_GEOUR Translation initiation factor IF-2 OS=Geobacter uraniireducens
(strain Rf4) GN=infB PE=3 SV=1
Length = 882
Score = 34.3 bits (77), Expect = 0.53, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 21/142 (14%)
Query: 37 KADPRPIIYKANPRPII--YKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPSTYKADP 94
K RP + + RP + +A RP+ RP++ + RP+ + RPST +
Sbjct: 151 KPKERPPVQREAQRPAVAPSRAPERPAAKPGTERPASQRYPDRPAPPRGTERPSTSRVPE 210
Query: 95 R--PIIYKADPRPSTYGECSVKSPSPKTLAEFYSIVTFFLSSTHHTKFLFGLAAARVQRR 152
R PI+ A P GE K K +A + + K G+ + +
Sbjct: 211 RVTPIVPLAVP---PVGEERRKGRKGKEVA-----------AGNGKKGAAGVVVPKRKEE 256
Query: 153 VNRGDLARAQDRSEGLLGPGPR 174
+ DL +R + PGPR
Sbjct: 257 FKKTDLLEKHER---IFEPGPR 275
>sp|Q5ZI08|SPT5H_CHICK Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H
PE=2 SV=1
Length = 1079
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 51 PIIYKAD-------PRP-STYKADPRPSTY-KVDPRPSTYKADPRPSTYKADPRPIIYKA 101
P +Y D P P +Y+ P P +Y +V P P Y+ P++Y P P+ Y+A
Sbjct: 874 PAMYNTDQFSPYAVPSPQGSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQA 933
Query: 102 DPRPSTYG 109
P PS G
Sbjct: 934 SPSPSPVG 941
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 25 SYYKADPRPIIYKADPRPIIYKANPRPIIYKADPRPS 61
SY++ P P+ Y+ P Y P P+ Y+A P PS
Sbjct: 902 SYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPS 938
>sp|Q8BUE7|MUC20_MOUSE Mucin-20 OS=Mus musculus GN=Muc20 PE=1 SV=1
Length = 656
Score = 33.5 bits (75), Expect = 0.88, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 58 PRPSTYKADPRPSTYKVDPRPSTYKADPRPS---TYKADPRPIIYKADPRPST 107
P PS+ P PS+ P PS+ P PS T P P P PS+
Sbjct: 174 PEPSSLTTSPAPSSLITSPTPSSLTTSPAPSFLDTQTTSPAPSSLTTSPAPSS 226
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 48 NPRPIIYKADPRPSTYKADPRPSTYKVDPRPS---TYKADPRPSTYKADPRP 96
+P P P PS+ P PS+ P PS T P PS+ P P
Sbjct: 173 SPEPSSLTTSPAPSSLITSPTPSSLTTSPAPSFLDTQTTSPAPSSLTTSPAP 224
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 58 PRPS---TYKADPRPSTYKVDPRPSTYKADPRPSTYKADPRPIIY---KADPRPSTYGEC 111
P PS T P PS+ P PS+ P PS+ P P P PS+
Sbjct: 162 PAPSFLDTQTTSPEPSSLTTSPAPSSLITSPTPSSLTTSPAPSFLDTQTTSPAPSSL--- 218
Query: 112 SVKSPSPKTL 121
SP+P +L
Sbjct: 219 -TTSPAPSSL 227
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 40 PRPIIYKANPRPIIYKADPRPSTYKADPRPS---TYKVDPRPSTYKADPRPST 89
P P +P P P PS+ P PS T P PS+ P PS+
Sbjct: 174 PEPSSLTTSPAPSSLITSPTPSSLTTSPAPSFLDTQTTSPAPSSLTTSPAPSS 226
>sp|A7ZC69|IF2_CAMC1 Translation initiation factor IF-2 OS=Campylobacter concisus
(strain 13826) GN=infB PE=3 SV=1
Length = 885
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 57 DPRPSTYKADPRPSTYKVDPRPSTYKADPRPSTYKADPRPIIYKADPRPSTYGECSVKSP 116
+P+ + KA+P+P K +P+ ++ +P T P+ K + +P+ ++P
Sbjct: 90 EPKKAATKAEPKPEKAKAEPKKEAQISEEKPKTEPKKEEPV--KVEQKPA-------EAP 140
Query: 117 SPK 119
PK
Sbjct: 141 KPK 143
>sp|Q9CW46|RAVR1_MOUSE Ribonucleoprotein PTB-binding 1 OS=Mus musculus GN=Raver1 PE=1 SV=2
Length = 748
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 72 YKVDPRPSTYKADPRPSTYKADPRPIIYKADPRPSTYGECSVKSPSPKTLAEFYSIVTFF 131
Y D P + PR T A P +K P PS++ E P++ ++ F
Sbjct: 597 YPTDVGPRRLFSHPREPTLGAH-GPSRHKMSPPPSSFNE-------PRSGGGSGGPLSHF 648
Query: 132 LSSTHHTKFLFGLAAARVQRRVNRGDLARAQDRSEGLLGPGP 173
S + + F GL A Q +N+ + SEGLLG GP
Sbjct: 649 YSGSPTSYFTSGLQAGLKQSHLNKAVGSSPMGSSEGLLGLGP 690
>sp|O97902|ASAP1_BOVIN Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein
1 OS=Bos taurus GN=ASAP1 PE=1 SV=1
Length = 1129
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 49 PRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPSTYKADPRPIIYKADPRPSTY 108
P+P I P+P + P+P + P+P P+P P+P + + +P T
Sbjct: 954 PKPPIGDLPPKPG--ELPPKPQLGDLPPKPQLADLPPKPQVKDLPPKPQLGELLAKPQT- 1010
Query: 109 GECSVKSPSPKTL 121
G+ S K+ P L
Sbjct: 1011 GDASPKAQPPLEL 1023
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 31 PRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPSTY 90
P+P I P+P + P+P + P+P P+P + P+P + +P T
Sbjct: 954 PKPPIGDLPPKP--GELPPKPQLGDLPPKPQLADLPPKPQVKDLPPKPQLGELLAKPQTG 1011
Query: 91 KADPR 95
A P+
Sbjct: 1012 DASPK 1016
>sp|Q9QWY8|ASAP1_MOUSE Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein
1 OS=Mus musculus GN=Asap1 PE=1 SV=2
Length = 1147
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 12 PITYNLTRQIRDLSYYKADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPST 71
P T+ + Q+ +L +P + + P+P+ + P+P + + P+P + P+P
Sbjct: 936 PETFQKSSQLTELP-----QKPPLGELPPKPV--ELAPKPQVGELPPKPG--ELPPKPQL 986
Query: 72 YKVDPRPSTYKADPRPSTYKADPRPIIYKADPRPSTYGECSVKSPSPKTLAE 123
+ P+P P+P P+P + + S G+ S K P + +
Sbjct: 987 GDLPPKPQLSDLPPKPQMKDLPPKPQLGDLLAK-SQAGDVSAKVQPPSEVTQ 1037
>sp|Q1AAU6|ASAP1_RAT Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein
1 OS=Rattus norvegicus GN=Asap1 PE=2 SV=2
Length = 1144
Score = 32.3 bits (72), Expect = 2.3, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 12 PITYNLTRQIRDLSYYKADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPST 71
P T+ + Q+ +L +P + P+P+ + P+P I + P+P + P+P
Sbjct: 933 PETFQKSSQLSELP-----QKPPLGDLPPKPM--ELAPKPQIGELPPKPG--ELPPKPQL 983
Query: 72 YKVDPRPSTYKADPRPSTYKADPRP 96
+ P+P P+P P+P
Sbjct: 984 GDLPPKPQLSDLPPKPQMKDLPPKP 1008
>sp|Q6H236|PEG3_BOVIN Paternally-expressed gene 3 protein OS=Bos taurus GN=PEG3 PE=2 SV=1
Length = 2387
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 31 PRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPSTY 90
PRP+I + RP + + PRP+I + RP RP RP + P ++Y
Sbjct: 1650 PRPVILRNQLRPDMPRNQPRPVILRNQLRPDMLGNQLRPDMPGNQLRPDMLREPPAETSY 1709
Query: 91 KADPRPIIYKADPRPSTYGECSVKS 115
I Y P++Y E + ++
Sbjct: 1710 AELVAQISYAELVTPTSYAELAAET 1734
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 32 RPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPRPSTYK 91
RP++ + RP + + PRP+I + RP + PRP + RP RP
Sbjct: 1633 RPVMPRNQLRPDMPRNQPRPVILRNQLRPDMPRNQPRPVILRNQLRPDMLGNQLRPDMPG 1692
Query: 92 ADPRPIIYKADPRPSTYGE 110
RP + + P ++Y E
Sbjct: 1693 NQLRPDMLREPPAETSYAE 1711
>sp|P07313|MYLK2_RABIT Myosin light chain kinase 2, skeletal/cardiac muscle
OS=Oryctolagus cuniculus GN=MYLK2 PE=1 SV=3
Length = 608
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 47 ANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPR-PSTYKADPRP 96
A+ + + DP P + P PS K DP PST K D P+ K D P
Sbjct: 25 ASEESLAAEKDPAPPDPEKGPGPSDTKQDPDPSTPKKDANTPAPEKGDVVP 75
>sp|A9WPV8|IF2_RENSM Translation initiation factor IF-2 OS=Renibacterium salmoninarum
(strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589
/ NCIMB 2235) GN=infB PE=3 SV=1
Length = 956
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 58 PRPSTYKADPRPSTYKVDPRPSTYKADPRP 87
PRP+ PRP+ PRP+ PRP
Sbjct: 213 PRPAAGSGGPRPAAGSGGPRPAAGSGGPRP 242
Score = 30.0 bits (66), Expect = 9.5, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 49 PRPIIYKADPRPSTYKADPRPSTYKVDPRP 78
PRP PRP+ PRP+ PRP
Sbjct: 213 PRPAAGSGGPRPAAGSGGPRPAAGSGGPRP 242
>sp|P21080|E2_VACCC Protein E2 OS=Vaccinia virus (strain Copenhagen) GN=E2L PE=3 SV=1
Length = 737
Score = 30.8 bits (68), Expect = 5.3, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 27 YKADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPR 86
YK +PI +K + R I+YK N R + + + S +K S K+D P + +
Sbjct: 470 YKLIQKPIPFKEENRNIVYKKNNRVLCFDS-LENSAFK-----SLIKIDSIPGLKTYNMK 523
Query: 87 PSTYKADPRPIIYKADPRPSTYGE 110
TY+ I + P+ S + E
Sbjct: 524 DITYEKSNNIICVRFIPQESIHNE 547
>sp|P21604|E2_VACCW Protein E2 OS=Vaccinia virus (strain Western Reserve) GN=E2L PE=3
SV=2
Length = 737
Score = 30.8 bits (68), Expect = 5.5, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 27 YKADPRPIIYKADPRPIIYKANPRPIIYKADPRPSTYKADPRPSTYKVDPRPSTYKADPR 86
YK +PI +K + R I+YK N R + + + S +K S K+D P + +
Sbjct: 470 YKLIQKPIPFKEENRNIVYKKNNRVLCFDS-LENSAFK-----SLIKIDSIPGLKTYNMK 523
Query: 87 PSTYKADPRPIIYKADPRPSTYGE 110
TY+ I + P+ S + E
Sbjct: 524 DITYEKSNNIICVRFIPQESIHNE 547
>sp|Q6K833|MCES2_ORYSJ mRNA cap guanine-N7 methyltransferase 2 OS=Oryza sativa subsp.
japonica GN=Os02g0780600 PE=2 SV=1
Length = 339
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 133 SSTHHTKFLFGLAAARVQRRVNRGDLARAQDRSEGLLGPGPRLVRL 178
+ ++L+ A+ RV+R D+ D +G+LGPGP +RL
Sbjct: 294 ENDQEEEWLWTQQASMDDGRVSRTDILPPADNEKGILGPGPADMRL 339
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,560,389
Number of Sequences: 539616
Number of extensions: 3806307
Number of successful extensions: 8964
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 7508
Number of HSP's gapped (non-prelim): 673
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)