Query psy3389
Match_columns 195
No_of_seqs 7 out of 9
Neff 1.5
Searched_HMMs 29240
Date Fri Aug 16 23:45:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kpy_A Major pollen allergen A 77.2 9.5 0.00032 29.1 7.1 13 95-107 95-107 (108)
2 3arc_I Photosystem II reaction 68.8 1.4 4.9E-05 28.8 0.7 30 124-158 8-37 (38)
3 1mzj_A Beta-ketoacylsynthase I 25.1 22 0.00074 28.0 0.9 26 166-195 304-329 (339)
4 1oks_A RNA polymerase alpha su 24.8 21 0.00071 24.9 0.7 21 117-137 33-53 (56)
5 1ub7_A 3-oxoacyl-[acyl-carrier 24.4 15 0.0005 28.4 -0.2 25 167-195 293-317 (322)
6 1zow_A 3-oxoacyl-[acyl-carrier 19.6 28 0.00096 26.6 0.5 26 166-195 284-309 (313)
7 3iox_A AGI/II, PA; alpha helix 19.1 2.2E+02 0.0076 26.3 6.3 17 92-108 473-489 (497)
8 2ebd_A 3-oxoacyl-[acyl-carrier 16.5 37 0.0013 25.8 0.5 26 166-195 282-307 (309)
9 1pc2_A Mitochondria fission pr 16.4 33 0.0011 26.2 0.3 42 107-148 37-81 (152)
10 1hnj_A Beta-ketoacyl-acyl carr 15.5 40 0.0014 25.9 0.5 35 141-195 281-315 (317)
No 1
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris}
Probab=77.16 E-value=9.5 Score=29.11 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCC
Q psy3389 95 RPIIYKADPRPST 107 (195)
Q Consensus 95 ~P~~ykaaP~P~s 107 (195)
.|+++...|+|++
T Consensus 95 ~~~~~~~~~~~~~ 107 (108)
T 2kpy_A 95 PPVDGGSPPPPST 107 (108)
T ss_dssp SCCCCCCSSCCSC
T ss_pred CCccCCCCccCCC
Confidence 4555555555554
No 2
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=68.79 E-value=1.4 Score=28.79 Aligned_cols=30 Identities=40% Similarity=0.728 Sum_probs=23.2
Q ss_pred HHhhhhhhhccCchhhHHHHHHHHHHHHhhcccch
Q psy3389 124 FYSIVTFFLSSTHHTKFLFGLAAARVQRRVNRGDL 158 (195)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
-|.+|+||.| -|+||+...---|.-+|.|+
T Consensus 8 Vy~vV~ffvs-----LFiFGfLsnDP~RNP~rkd~ 37 (38)
T 3arc_I 8 VYIVVTFFVL-----LFVFGFLSGDPARNPKRKDL 37 (38)
T ss_dssp HHHHHHHHHH-----HHHHHHHTTGGGCSSSCCCC
T ss_pred ehhHHHHHHH-----HHHccccCCCCCCCCCcccC
Confidence 3788888886 59999988777777777665
No 3
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2
Probab=25.14 E-value=22 Score=28.01 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=19.3
Q ss_pred cCccCCCcceeeeeeehhccccCCcccCCC
Q psy3389 166 EGLLGPGPRLVRLVSYWAFGFEGNWGSLLM 195 (195)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (195)
+|.+.+|-+ +..++||+..+|+++++
T Consensus 304 ~g~~~~G~~----vll~~~G~G~t~~~~~l 329 (339)
T 1mzj_A 304 SGAVPGGGP----ALMIGFGAGLSYAGQAL 329 (339)
T ss_dssp HTSSCTTCE----EEEEEEETTTEEEEEEE
T ss_pred cCCCCCCCE----EEEEEEchhheeEEEEE
Confidence 466777754 45679999999998763
No 4
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=24.81 E-value=21 Score=24.89 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=15.4
Q ss_pred ChhhHHHHHhhhhhhhccCch
Q psy3389 117 SPKTLAEFYSIVTFFLSSTHH 137 (195)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ 137 (195)
.-+.|+|||..++-.+--.||
T Consensus 33 g~~dL~eF~qMl~~I~~~~~~ 53 (56)
T 1oks_A 33 GANDLAKFHQMLVKIIMKHHH 53 (56)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHhcc
Confidence 458999999988766654444
No 5
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2
Probab=24.38 E-value=15 Score=28.45 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=18.4
Q ss_pred CccCCCcceeeeeeehhccccCCcccCCC
Q psy3389 167 GLLGPGPRLVRLVSYWAFGFEGNWGSLLM 195 (195)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (195)
|.+.+| +.+..++|||.++|+++++
T Consensus 293 g~~~~g----~~~l~~~~G~G~~~~~~vl 317 (322)
T 1ub7_A 293 GRIREG----DHVLLVSFGAGLTWAAAVL 317 (322)
T ss_dssp TSSCTT----CEEEEEEEETTTEEEEEEE
T ss_pred CCCCCC----CEEEEEEEChhheeEEEEE
Confidence 455565 4566788999999998763
No 6
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A
Probab=19.62 E-value=28 Score=26.64 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=18.6
Q ss_pred cCccCCCcceeeeeeehhccccCCcccCCC
Q psy3389 166 EGLLGPGPRLVRLVSYWAFGFEGNWGSLLM 195 (195)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (195)
+|.+.+|-+ +..++||...+|+++++
T Consensus 284 ~~~~~~g~~----vl~~~~G~G~t~~~~~l 309 (313)
T 1zow_A 284 NGKLKDDDT----IVLVGFGGGLTWGAMTI 309 (313)
T ss_dssp TTCCCTTCE----EEEEEEETTTEEEEEEE
T ss_pred cCCCCCCCE----EEEEEEchhhhheEEEE
Confidence 355667643 45688999999998763
No 7
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=19.08 E-value=2.2e+02 Score=26.34 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCCCC
Q psy3389 92 ADPRPIIYKADPRPSTY 108 (195)
Q Consensus 92 AAP~P~~ykaaP~P~sy 108 (195)
.+|+-+.|...|.||+-
T Consensus 473 ~~~~~p~y~~~~~~~~~ 489 (497)
T 3iox_A 473 PAPVAPNYEKEPTPPTR 489 (497)
T ss_dssp CCCCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCCcc
Confidence 45666677777777764
No 8
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus}
Probab=16.48 E-value=37 Score=25.83 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=18.3
Q ss_pred cCccCCCcceeeeeeehhccccCCcccCCC
Q psy3389 166 EGLLGPGPRLVRLVSYWAFGFEGNWGSLLM 195 (195)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (195)
+|.+.+|-+ +..++||.-.+|+++++
T Consensus 282 ~g~~~~G~~----~l~~~~G~G~~~~~~~l 307 (309)
T 2ebd_A 282 EGKVKRGDL----ILMTAMGGGLTWGAVLL 307 (309)
T ss_dssp TTCCCTTCE----EEEEEEETTTEEEEEEE
T ss_pred cCCCCCCCE----EEEEEEchhhhhEEEEE
Confidence 355666644 44678899999998763
No 9
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=16.40 E-value=33 Score=26.20 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=31.2
Q ss_pred CCccccccCCChhhHHHHHhhhhhhhccC---chhhHHHHHHHHH
Q psy3389 107 TYGECSVKSPSPKTLAEFYSIVTFFLSST---HHTKFLFGLAAAR 148 (195)
Q Consensus 107 syg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 148 (195)
.||-|-|+|.++..+.+=-.+..-.+... .|...||-||.+-
T Consensus 37 ~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~ 81 (152)
T 1pc2_A 37 EYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 81 (152)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 38889999999988777666655555554 6788888887664
No 10
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Probab=15.55 E-value=40 Score=25.89 Aligned_cols=35 Identities=37% Similarity=0.461 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcccchhhhhccccCccCCCcceeeeeeehhccccCCcccCCC
Q psy3389 141 LFGLAAARVQRRVNRGDLARAQDRSEGLLGPGPRLVRLVSYWAFGFEGNWGSLLM 195 (195)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (195)
++.|..+.-+.++.+|| .+..++||...+||++++
T Consensus 281 ~~~L~~~~~~~~~~~G~--------------------~vll~~~G~G~t~~~~~l 315 (317)
T 1hnj_A 281 PCALDEAVRDGRIKPGQ--------------------LVLLEAFGGGFTWGSALV 315 (317)
T ss_dssp HHHHHHHHHTTCSCTTC--------------------EEEEEEEETTTEEEEEEE
T ss_pred HHHHHHHHHhCCCCCCC--------------------EEEEEEEchhheeEEEEE
Done!