Query psy3389
Match_columns 195
No_of_seqs 7 out of 9
Neff 1.5
Searched_HMMs 13730
Date Fri Aug 16 23:45:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3389.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3389hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oksa_ a.8.5.1 (A:) RNA polym 35.3 5 0.00037 26.2 0.7 21 117-137 32-52 (54)
2 d3b2ua2 g.3.9.1 (A:481-502) EG 30.3 8.5 0.00062 21.9 1.0 12 164-175 7-18 (26)
3 d2axti1 f.23.37.1 (I:1-35) Pho 30.1 5.2 0.00038 24.2 0.0 18 124-146 8-25 (35)
4 d2pqrb1 a.118.8.1 (B:5-128) Mi 19.4 24 0.0017 24.7 1.9 58 107-168 40-99 (124)
5 d1wlfa1 d.31.1.1 (A:100-179) P 15.2 24 0.0017 23.4 0.9 21 7-27 21-41 (80)
6 d1nzna_ a.118.8.1 (A:) Mitocho 11.4 63 0.0046 20.5 2.2 53 108-164 39-94 (122)
7 d1txga1 a.100.1.6 (A:181-335) 9.4 72 0.0053 21.9 2.0 33 116-148 57-89 (155)
8 d1qdlb_ c.23.16.1 (B:) Anthran 9.1 53 0.0039 22.0 1.2 13 13-25 13-25 (195)
9 d1qo7a_ c.69.1.11 (A:) Bacteri 7.3 29 0.0021 25.3 -1.0 22 167-190 50-72 (394)
10 d1u6ea2 c.95.1.2 (A:175-317) K 7.2 69 0.005 21.6 1.0 26 166-195 121-146 (148)
No 1
>d1oksa_ a.8.5.1 (A:) RNA polymerase alpha subunit {Measles virus [TaxId: 11234]}
Probab=35.29 E-value=5 Score=26.18 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=16.9
Q ss_pred ChhhHHHHHhhhhhhhccCch
Q psy3389 117 SPKTLAEFYSIVTFFLSSTHH 137 (195)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ 137 (195)
.-+.|+|||..+.-.+--.||
T Consensus 32 g~~dL~eF~QMl~~Ii~k~~~ 52 (54)
T d1oksa_ 32 GANDLAKFHQMLVKIIMKHHH 52 (54)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHhcc
Confidence 458999999999887776665
No 2
>d3b2ua2 g.3.9.1 (A:481-502) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.31 E-value=8.5 Score=21.92 Aligned_cols=12 Identities=50% Similarity=0.830 Sum_probs=10.5
Q ss_pred cccCccCCCcce
Q psy3389 164 RSEGLLGPGPRL 175 (195)
Q Consensus 164 ~~~~~~~~~~~~ 175 (195)
.|||-.||+||-
T Consensus 7 ssegcwgpeprd 18 (26)
T d3b2ua2 7 SPEGCWGPEPRD 18 (26)
T ss_dssp CTTCBSSSSGGG
T ss_pred CcCcccCCCCCc
Confidence 589999999984
No 3
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=30.07 E-value=5.2 Score=24.23 Aligned_cols=18 Identities=44% Similarity=0.944 Sum_probs=14.3
Q ss_pred HHhhhhhhhccCchhhHHHHHHH
Q psy3389 124 FYSIVTFFLSSTHHTKFLFGLAA 146 (195)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~ 146 (195)
-|.+|+||.| -|+||+..
T Consensus 8 Vy~vV~fFv~-----lFiFGFLS 25 (35)
T d2axti1 8 VYIVVTFFVL-----LFVFGFLS 25 (35)
T ss_dssp HHHHHHHHHH-----HHHHHHHT
T ss_pred hhhHHHHHHH-----HHHHhhcc
Confidence 4888899986 58999864
No 4
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.35 E-value=24 Score=24.70 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=39.8
Q ss_pred CCccccccCCChhhHHHHHhhhhhhh--ccCchhhHHHHHHHHHHHHhhcccchhhhhccccCc
Q psy3389 107 TYGECSVKSPSPKTLAEFYSIVTFFL--SSTHHTKFLFGLAAARVQRRVNRGDLARAQDRSEGL 168 (195)
Q Consensus 107 syg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
.|+-|-|+|.....+.+=-.+..-.+ +..||...|+.|+.+-. +.||..+|..--+-+
T Consensus 40 ~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yy----klgdy~~A~~~~~~~ 99 (124)
T d2pqrb1 40 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY----KLGEYSMAKRYVDTL 99 (124)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----HHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH----HHhhHHHHHHHHHHH
Confidence 37889999998887766555544433 34688889999988765 457777775444333
No 5
>d1wlfa1 d.31.1.1 (A:100-179) Peroxisome biogenesis factor 1 (PEX-1), domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.19 E-value=24 Score=23.45 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=17.4
Q ss_pred hhccCCchhhHHHHhhhcccC
Q psy3389 7 ELKSRPITYNLTRQIRDLSYY 27 (195)
Q Consensus 7 ~~~~~~~~~NL~RQi~~LS~~ 27 (195)
||.+.-|-.|||.|||-+.-|
T Consensus 21 El~a~~lE~~LL~QiRiV~~~ 41 (80)
T d1wlfa1 21 ELHAISLEQHLLDQIRIVFPK 41 (80)
T ss_dssp HHSCSSHHHHHHHHCCEECTT
T ss_pred HHHHHHHHHHHHhheeeccCC
Confidence 677888999999999876654
No 6
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.43 E-value=63 Score=20.48 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=35.2
Q ss_pred CccccccCCChhhHHHHHhhhhhhhcc---CchhhHHHHHHHHHHHHhhcccchhhhhcc
Q psy3389 108 YGECSVKSPSPKTLAEFYSIVTFFLSS---THHTKFLFGLAAARVQRRVNRGDLARAQDR 164 (195)
Q Consensus 108 yg~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (195)
||.|-++|.......+-..+..=.|.- ..|...+|.|+.+-. +.||..+|..-
T Consensus 39 ~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~----~~g~~~~A~~~ 94 (122)
T d1nzna_ 39 YAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY----RLKEYEKALKY 94 (122)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH----HTTCHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH----HHhhhHHHHHH
Confidence 788989998888877777776666543 234456677765543 34777776543
No 7
>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=9.37 E-value=72 Score=21.94 Aligned_cols=33 Identities=6% Similarity=-0.019 Sum_probs=26.7
Q ss_pred CChhhHHHHHhhhhhhhccCchhhHHHHHHHHH
Q psy3389 116 PSPKTLAEFYSIVTFFLSSTHHTKFLFGLAAAR 148 (195)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (195)
..++|+.++..|--+++++++...+.||...++
T Consensus 57 ~~~~t~~~~aGiGDLi~Tc~~sRN~~~G~~l~~ 89 (155)
T d1txga1 57 GDRETAFGLSGFGDLIATFRGGRNGMLGELLGK 89 (155)
T ss_dssp SCGGGGGSTTTHHHHHHTTTCHHHHHHHHHHHT
T ss_pred ccchhhcccchhhhHHhhcCCCCccHHHHHHhh
Confidence 356788887778888898899889999987763
No 8
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=9.11 E-value=53 Score=22.02 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=10.8
Q ss_pred chhhHHHHhhhcc
Q psy3389 13 ITYNLTRQIRDLS 25 (195)
Q Consensus 13 ~~~NL~RQi~~LS 25 (195)
.|+||.|+||.|-
T Consensus 13 ft~Ni~~~l~~lG 25 (195)
T d1qdlb_ 13 FVYNIAQIVGELG 25 (195)
T ss_dssp SHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhCC
Confidence 5899999998873
No 9
>d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]}
Probab=7.26 E-value=29 Score=25.28 Aligned_cols=22 Identities=27% Similarity=0.711 Sum_probs=15.3
Q ss_pred CccC-CCcceeeeeeehhccccCCc
Q psy3389 167 GLLG-PGPRLVRLVSYWAFGFEGNW 190 (195)
Q Consensus 167 ~~~~-~~~~~~~~~~~~~~~~~~~~ 190 (195)
+-.| +-..|.+||.||.=+| +|
T Consensus 50 ~~~g~~~~~~~~l~~~w~~~~--dw 72 (394)
T d1qo7a_ 50 GRFGITSEWLTTMREKWLSEF--DW 72 (394)
T ss_dssp CTTSSCHHHHHHHHHHHHHTC--CH
T ss_pred cccCCCHHHHHHHHHHhhhcC--CH
Confidence 3344 4467889999998766 55
No 10
>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.18 E-value=69 Score=21.63 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=16.6
Q ss_pred cCccCCCcceeeeeeehhccccCCcccCCC
Q psy3389 166 EGLLGPGPRLVRLVSYWAFGFEGNWGSLLM 195 (195)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (195)
+|.+.+|-+ +..++||---.||+.|+
T Consensus 121 ~g~i~~Gd~----vll~gfG~G~s~~a~ll 146 (148)
T d1u6ea2 121 TGAAKPGDL----ALLIGYGAGLSYAAQVV 146 (148)
T ss_dssp HTSSCTTCE----EEEEEEETTTEEEEEEE
T ss_pred cCCCCCCCE----EEEEEEchhhhheEEEE
Confidence 345555533 44567887778988764
Done!