RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3389
         (195 letters)



>gnl|CDD|225312 COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase
           [General function prediction only].
          Length = 265

 Score = 26.9 bits (60), Expect = 7.7
 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 5/40 (12%)

Query: 154 NRGDLAR----AQDRSEGLLGPGPRLVRLVSYWAFGFEGN 189
            R DLAR      +    L+G    LV    Y     EGN
Sbjct: 81  TREDLARVLNHLAEEGIPLVGASDHLVSEALYLE-DPEGN 119


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,302,376
Number of extensions: 947690
Number of successful extensions: 833
Number of sequences better than 10.0: 1
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 18
Length of query: 195
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 103
Effective length of database: 6,857,034
Effective search space: 706274502
Effective search space used: 706274502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)