Query psy3393
Match_columns 433
No_of_seqs 139 out of 202
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 23:51:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x2l_A CUT-like 2, homeobox pr 100.0 6.9E-34 2.4E-38 240.1 9.7 84 346-431 8-92 (101)
2 1wiz_A DNA-binding protein SAT 100.0 1.2E-32 4.2E-37 232.7 7.5 84 348-432 11-95 (101)
3 2o4a_A DNA-binding protein SAT 100.0 7E-33 2.4E-37 231.0 4.8 82 350-431 2-84 (93)
4 1wh6_A CUT-like 2, homeobox pr 100.0 3.1E-33 1.1E-37 236.1 -0.1 79 351-429 13-92 (101)
5 1wh8_A CUT-like 2, homeobox pr 100.0 1.3E-30 4.6E-35 223.3 7.0 82 349-431 21-103 (111)
6 1yse_A DNA-binding protein SAT 100.0 2.2E-30 7.7E-35 229.7 5.2 84 349-432 9-99 (141)
7 2csf_A DNA-binding protein SAT 99.9 1.4E-25 4.7E-30 189.4 6.8 79 347-432 9-95 (101)
8 2d5v_A Hepatocyte nuclear fact 99.9 1.5E-25 5.1E-30 197.0 6.6 82 352-433 1-82 (164)
9 1ic8_A Hepatocyte nuclear fact 95.3 0.014 4.8E-07 53.8 4.4 61 352-418 23-83 (194)
10 1r69_A Repressor protein CI; g 95.1 0.041 1.4E-06 39.3 5.6 57 359-422 1-57 (69)
11 2b5a_A C.BCLI; helix-turn-heli 95.1 0.069 2.4E-06 39.0 6.8 61 357-423 8-68 (77)
12 3s8q_A R-M controller protein; 94.9 0.081 2.8E-06 39.6 7.0 61 356-422 8-68 (82)
13 2h8r_A Hepatocyte nuclear fact 94.9 0.03 1E-06 53.0 5.5 57 356-418 28-84 (221)
14 2r1j_L Repressor protein C2; p 94.5 0.042 1.4E-06 39.0 4.2 59 358-422 4-62 (68)
15 2wiu_B HTH-type transcriptiona 94.4 0.08 2.7E-06 39.8 5.9 43 353-396 6-48 (88)
16 1adr_A P22 C2 repressor; trans 94.4 0.049 1.7E-06 39.6 4.5 59 358-422 4-62 (76)
17 3b7h_A Prophage LP1 protein 11 94.4 0.13 4.5E-06 37.6 6.8 60 357-422 5-65 (78)
18 2kpj_A SOS-response transcript 94.0 0.08 2.7E-06 41.1 5.3 60 356-421 6-65 (94)
19 3g5g_A Regulatory protein; tra 93.8 0.16 5.5E-06 40.6 6.8 61 356-422 25-85 (99)
20 1zug_A Phage 434 CRO protein; 93.7 0.17 5.7E-06 36.3 6.2 57 359-422 3-59 (71)
21 3f6w_A XRE-family like protein 93.6 0.16 5.5E-06 37.9 6.2 62 356-423 11-72 (83)
22 2k9q_A Uncharacterized protein 93.5 0.16 5.4E-06 37.8 5.9 58 360-423 3-60 (77)
23 1y7y_A C.AHDI; helix-turn-heli 93.5 0.082 2.8E-06 38.2 4.2 60 356-421 10-69 (74)
24 2a6c_A Helix-turn-helix motif; 93.3 0.062 2.1E-06 41.0 3.4 46 351-397 10-55 (83)
25 3kz3_A Repressor protein CI; f 92.9 0.13 4.5E-06 38.6 4.7 60 356-421 9-68 (80)
26 3vk0_A NHTF, transcriptional r 92.8 0.24 8.1E-06 39.9 6.4 58 357-420 19-76 (114)
27 2ewt_A BLDD, putative DNA-bind 92.7 0.18 6.2E-06 36.3 5.0 58 357-420 6-65 (71)
28 3eus_A DNA-binding protein; st 92.4 0.34 1.1E-05 37.2 6.5 60 357-422 12-71 (86)
29 2ef8_A C.ECOT38IS, putative tr 92.1 0.13 4.6E-06 38.1 3.8 43 354-397 5-47 (84)
30 3ivp_A Putative transposon-rel 92.0 0.14 4.7E-06 41.7 4.1 44 352-396 5-48 (126)
31 2xi8_A Putative transcription 91.9 0.26 9E-06 34.6 5.0 55 362-422 4-58 (66)
32 2ppx_A AGR_C_3184P, uncharacte 90.9 0.15 5.1E-06 40.1 3.1 69 354-429 25-93 (99)
33 4ghj_A Probable transcriptiona 90.8 0.21 7.1E-06 41.0 4.0 56 357-420 34-89 (101)
34 1x57_A Endothelial differentia 90.3 0.2 6.9E-06 38.3 3.3 57 358-420 12-68 (91)
35 3qq6_A HTH-type transcriptiona 90.1 0.62 2.1E-05 35.2 5.9 58 360-422 11-68 (78)
36 3op9_A PLI0006 protein; struct 89.8 0.46 1.6E-05 37.8 5.2 37 359-396 9-45 (114)
37 2ict_A Antitoxin HIGA; helix-t 89.8 0.6 2E-05 35.9 5.6 58 358-421 7-64 (94)
38 3t76_A VANU, transcriptional r 89.6 0.36 1.2E-05 38.5 4.3 54 361-421 26-79 (88)
39 3pxp_A Helix-turn-helix domain 89.4 0.75 2.6E-05 44.4 7.2 73 355-432 2-80 (292)
40 3omt_A Uncharacterized protein 89.3 0.044 1.5E-06 40.3 -1.1 56 359-420 8-63 (73)
41 3f52_A CLP gene regulator (CLG 89.3 0.76 2.6E-05 36.7 6.1 60 356-421 25-84 (117)
42 1b0n_A Protein (SINR protein); 89.1 0.68 2.3E-05 36.1 5.6 36 360-396 2-37 (111)
43 3fmy_A HTH-type transcriptiona 88.8 0.46 1.6E-05 35.6 4.2 35 361-396 13-47 (73)
44 2o38_A Hypothetical protein; a 88.6 0.37 1.3E-05 40.3 3.9 38 358-396 39-76 (120)
45 1lmb_3 Protein (lambda repress 88.2 0.39 1.3E-05 36.5 3.5 58 357-420 15-72 (92)
46 1neq_A DNA-binding protein NER 87.6 0.32 1.1E-05 37.7 2.7 37 361-398 11-47 (74)
47 2l49_A C protein; P2 bacteriop 87.5 0.3 1E-05 37.6 2.5 36 360-396 5-40 (99)
48 3bs3_A Putative DNA-binding pr 87.0 0.55 1.9E-05 34.0 3.6 55 360-420 11-65 (76)
49 2bnm_A Epoxidase; oxidoreducta 86.9 0.51 1.7E-05 40.6 3.9 40 357-397 8-47 (198)
50 1y9q_A Transcriptional regulat 86.6 0.53 1.8E-05 40.5 3.8 39 358-397 10-48 (192)
51 3cec_A Putative antidote prote 86.4 0.48 1.6E-05 37.2 3.2 39 358-397 17-55 (104)
52 3u3w_A Transcriptional activat 86.2 0.4 1.4E-05 42.4 2.9 39 356-396 2-40 (293)
53 2wus_R RODZ, putative uncharac 85.7 2.1 7.2E-05 35.4 6.9 68 357-425 5-73 (112)
54 3trb_A Virulence-associated pr 84.8 0.63 2.2E-05 37.9 3.2 38 359-397 13-51 (104)
55 2jvl_A TRMBF1; coactivator, he 83.5 0.73 2.5E-05 37.1 3.1 58 358-421 33-92 (107)
56 3bdn_A Lambda repressor; repre 83.5 0.52 1.8E-05 41.7 2.4 37 359-396 17-53 (236)
57 3o9x_A Uncharacterized HTH-typ 82.1 1.3 4.4E-05 36.3 4.1 34 362-396 74-107 (133)
58 2l1p_A DNA-binding protein SAT 81.7 1.3 4.5E-05 36.6 3.9 39 356-397 18-56 (83)
59 3bd1_A CRO protein; transcript 80.7 0.6 2.1E-05 34.9 1.5 40 362-403 2-42 (79)
60 2pij_A Prophage PFL 6 CRO; tra 80.2 0.43 1.5E-05 34.5 0.5 46 363-410 5-52 (67)
61 2qfc_A PLCR protein; TPR, HTH, 80.2 0.47 1.6E-05 42.0 0.9 39 356-396 2-40 (293)
62 2fjr_A Repressor protein CI; g 79.5 2.2 7.5E-05 36.4 4.8 39 355-396 5-43 (189)
63 3kxa_A NGO0477 protein, putati 79.5 1.4 4.6E-05 37.6 3.5 64 357-426 66-129 (141)
64 2ofy_A Putative XRE-family tra 79.1 3.7 0.00013 30.7 5.4 58 358-422 15-72 (86)
65 4ich_A Transcriptional regulat 78.1 0.44 1.5E-05 43.6 0.0 39 357-396 28-66 (311)
66 2eby_A Putative HTH-type trans 77.1 0.97 3.3E-05 35.8 1.8 37 359-396 10-47 (113)
67 3mlf_A Transcriptional regulat 76.9 0.48 1.6E-05 38.5 -0.1 36 360-396 24-59 (111)
68 3fym_A Putative uncharacterize 76.8 3.3 0.00011 34.5 5.0 65 359-424 3-68 (130)
69 3lfp_A CSP231I C protein; tran 74.0 1.6 5.6E-05 33.8 2.3 36 360-396 2-41 (98)
70 2auw_A Hypothetical protein NE 69.8 3.4 0.00012 37.5 3.6 36 362-398 93-128 (170)
71 1jhf_A LEXA repressor; LEXA SO 69.5 2.9 9.8E-05 36.5 3.1 37 358-395 9-48 (202)
72 1vz0_A PARB, chromosome partit 61.3 5.9 0.0002 36.6 3.6 76 352-429 115-194 (230)
73 2awi_A PRGX; repressor, pherom 59.7 5.3 0.00018 37.6 3.1 35 360-396 4-38 (317)
74 2p5t_A Putative transcriptiona 55.0 2.5 8.7E-05 35.8 0.0 37 360-397 2-38 (158)
75 3r1f_A ESX-1 secretion-associa 37.6 22 0.00076 30.1 3.2 37 359-395 7-53 (135)
76 3qwg_A ESX-1 secretion-associa 35.9 24 0.00084 29.5 3.1 38 359-396 5-52 (123)
77 2eqx_A Kelch repeat and BTB do 34.2 38 0.0013 27.1 3.9 65 358-428 26-90 (105)
78 2x48_A CAG38821; archeal virus 32.0 58 0.002 22.4 4.1 36 359-396 19-54 (55)
79 3d1n_I POU domain, class 6, tr 27.0 18 0.00061 31.1 0.8 62 356-423 5-74 (151)
80 1uxc_A FRUR (1-57), fructose r 26.1 26 0.00089 26.5 1.5 25 373-398 1-25 (65)
81 1fx7_A Iron-dependent represso 25.9 1.4E+02 0.0049 26.5 6.6 47 367-414 17-76 (230)
82 1umq_A Photosynthetic apparatu 24.4 1.4E+02 0.0048 23.7 5.5 40 356-396 37-77 (81)
83 1zx4_A P1 PARB, plasmid partit 24.1 68 0.0023 29.4 4.1 45 351-397 4-48 (192)
84 1rzs_A Antirepressor, regulato 23.9 30 0.001 25.2 1.4 22 372-394 10-31 (61)
85 2cw1_A SN4M; lambda CRO fold, 22.9 38 0.0013 25.9 1.9 31 364-397 7-37 (65)
86 1r71_A Transcriptional repress 22.1 80 0.0027 28.3 4.1 59 352-412 33-95 (178)
87 1dw9_A Cyanate lyase; cyanate 21.9 2E+02 0.007 25.8 6.7 63 355-423 9-71 (156)
88 1oyi_A Double-stranded RNA-bin 21.5 24 0.00082 28.6 0.5 43 352-395 10-52 (82)
89 1tc3_C Protein (TC3 transposas 21.0 86 0.0029 19.8 3.1 34 363-398 13-46 (51)
90 2l0k_A Stage III sporulation p 20.8 96 0.0033 25.2 4.0 40 357-397 5-44 (93)
91 2ofz_A Nucleocapsid protein; S 20.6 38 0.0013 30.3 1.6 22 147-168 3-24 (138)
92 2r0q_C Putative transposon TN5 20.2 82 0.0028 27.6 3.7 42 356-399 160-201 (209)
No 1
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=100.00 E-value=6.9e-34 Score=240.09 Aligned_cols=84 Identities=38% Similarity=0.644 Sum_probs=81.1
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCccccc-chhHHHHHHHhhcCCCHHHH
Q psy3393 346 LGNSGELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLK-SGRETFRRMWKWLQEPEFQR 424 (433)
Q Consensus 346 ~~~i~d~~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLk-sGRE~YiRMyNWLqlPEdeR 424 (433)
+..+++.++|||++||++|++||++++|+|++||++||||+||||||||++||||++|+ +|||+|+||||||+++ ||
T Consensus 8 ~~p~~~~~~ldTk~I~~~ike~L~~~~isQ~~FA~~VLgrsQgtlS~lL~~PkpW~~L~~~Gre~yiRM~nWL~~~--er 85 (101)
T 1x2l_A 8 AGPGAEEEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLSDE--QN 85 (101)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHCCCCGGGCCHHHHHHHHHHHHHHTCT--HH
T ss_pred CCCCCCcCccCHHHHHHHHHHHHHHcCCCHHHHHHHHHccccchHHHHhcCCCCHHHHhHhhhHHHHHHHHHccCH--HH
Confidence 45689999999999999999999999999999999999999999999999999999999 9999999999999997 89
Q ss_pred HHHHHHh
Q psy3393 425 MSALRLA 431 (433)
Q Consensus 425 meILRl~ 431 (433)
++|||++
T Consensus 86 ~~~Lr~~ 92 (101)
T 1x2l_A 86 VLALRTI 92 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999987
No 2
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=99.97 E-value=1.2e-32 Score=232.72 Aligned_cols=84 Identities=31% Similarity=0.444 Sum_probs=79.3
Q ss_pred CCCCCCccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCC-CCcccccchhHHHHHHHhhcCCCHHHHHH
Q psy3393 348 NSGELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNP-KPWSKLKSGRETFRRMWKWLQEPEFQRMS 426 (433)
Q Consensus 348 ~i~d~~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnP-KPW~kLksGRE~YiRMyNWLqlPEdeRme 426 (433)
...+.++| |++||++|++||++++|+|++||++||||+||||||||++| |||++|++|||+|+||||||++||+||++
T Consensus 11 ~~~~~~~i-Tk~I~~~Ik~~Lk~~~isQ~~FA~~VL~rsQgtLs~lLr~P~kPW~~L~~Gre~f~RM~nWL~l~e~eR~e 89 (101)
T 1wiz_A 11 PTNSSVEV-SPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEEDPRTASQSLLVNLRAMQNFLNLPEVERDR 89 (101)
T ss_dssp CCCCSCCC-CTTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHTCCCTTTCCHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cccchhHh-hHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34566778 99999999999999999999999999999999999999999 79999999999999999999999999999
Q ss_pred HHHHhc
Q psy3393 427 ALRLAG 432 (433)
Q Consensus 427 ILRl~~ 432 (433)
||+...
T Consensus 90 Il~~e~ 95 (101)
T 1wiz_A 90 IYQDER 95 (101)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999763
No 3
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A*
Probab=99.97 E-value=7e-33 Score=231.04 Aligned_cols=82 Identities=33% Similarity=0.425 Sum_probs=76.1
Q ss_pred CCCCccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCC-CcccccchhHHHHHHHhhcCCCHHHHHHHH
Q psy3393 350 GELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPK-PWSKLKSGRETFRRMWKWLQEPEFQRMSAL 428 (433)
Q Consensus 350 ~d~~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPK-PW~kLksGRE~YiRMyNWLqlPEdeRmeIL 428 (433)
.+.+++||++||++|++||++++|+|++||++||||+||||||||++|| ||++|++|||+|+||||||++||+||++||
T Consensus 2 ~~~~~~~T~~I~~~ik~~Lk~~~isQ~~FA~~VL~rsQgtLs~lL~~Pkdpw~~l~~Gre~f~rM~nWL~l~e~eR~eil 81 (93)
T 2o4a_A 2 SHMNTEVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAERDRIY 81 (93)
T ss_dssp -----CCCTTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhhHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHh
Q psy3393 429 RLA 431 (433)
Q Consensus 429 Rl~ 431 (433)
+.+
T Consensus 82 ~~e 84 (93)
T 2o4a_A 82 QDE 84 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 4
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=99.97 E-value=3.1e-33 Score=236.06 Aligned_cols=79 Identities=42% Similarity=0.674 Sum_probs=76.8
Q ss_pred CCCccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCccccc-chhHHHHHHHhhcCCCHHHHHHHHH
Q psy3393 351 ELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLK-SGRETFRRMWKWLQEPEFQRMSALR 429 (433)
Q Consensus 351 d~~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLk-sGRE~YiRMyNWLqlPEdeRmeILR 429 (433)
.+++|||++||++|++||++++|+|++||++||||+||||||||++||||++|+ +||++|+||||||+++|+||++||-
T Consensus 13 ~~~~lDTk~I~~~ike~L~~~~isQ~~FA~~ILgrsqgtlSdlL~~PKpW~~L~~~Gre~fiRM~nWL~l~e~qr~~il~ 92 (101)
T 1wh6_A 13 MYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLSDQLGQAVGQQP 92 (101)
T ss_dssp HHSCCCHHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTCCHHHHHHHHHHHHHHHHTTCSCCCCCC
T ss_pred ccccCCHHHHHHHHHHHHHHcCCcHHHHHHHHHccCcCcHHHHhcCCCCHHHHhHHhHHHHHHHHHHhCCcHHHHHhhcC
Confidence 568999999999999999999999999999999999999999999999999999 8999999999999999999999974
No 5
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=99.96 E-value=1.3e-30 Score=223.29 Aligned_cols=82 Identities=34% Similarity=0.615 Sum_probs=77.0
Q ss_pred CCCCCccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCccccc-chhHHHHHHHhhcCCCHHHHHHH
Q psy3393 349 SGELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLK-SGRETFRRMWKWLQEPEFQRMSA 427 (433)
Q Consensus 349 i~d~~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLk-sGRE~YiRMyNWLqlPEdeRmeI 427 (433)
+.++++|||++||++|++||++++|+|++||++||||+||||||||++||||++|+ +|||+|+||||||+++|++ .+|
T Consensus 21 ~~~~~~lDTk~I~~~ikewL~~~~isQ~~FA~~ILgrsQgtlSdlL~~PkpW~~L~~~GRe~yiRM~nWL~l~e~~-~~l 99 (111)
T 1wh8_A 21 VAMSPELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLNDPHNV-EKL 99 (111)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTSCHHHHHHHHHHHHHHHCTTHH-HHH
T ss_pred HhccccCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCcCcHHHHHcCCCCHHHHhHhhhHHHHHHHHHhcChHHH-HHH
Confidence 35678999999999999999999999999999999999999999999999999999 8999999999999999855 588
Q ss_pred HHHh
Q psy3393 428 LRLA 431 (433)
Q Consensus 428 LRl~ 431 (433)
++++
T Consensus 100 ~~~~ 103 (111)
T 1wh8_A 100 RDMK 103 (111)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 6
>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=99.96 E-value=2.2e-30 Score=229.69 Aligned_cols=84 Identities=35% Similarity=0.430 Sum_probs=73.7
Q ss_pred CCCCCccCH------HHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCC-CcccccchhHHHHHHHhhcCCCH
Q psy3393 349 SGELEEINT------KELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPK-PWSKLKSGRETFRRMWKWLQEPE 421 (433)
Q Consensus 349 i~d~~~IDT------KeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPK-PW~kLksGRE~YiRMyNWLqlPE 421 (433)
+..++++|| ++||++|++||++++|+|++||++||||+||||||||++|| ||++|++|||+|+||||||++||
T Consensus 9 nkp~~~~~t~~~~vt~~I~~~Ik~eLk~~~IsQ~~FA~~VL~rsQGtLS~LLr~PkdPW~~LksGRE~fiRM~NWL~Lpe 88 (141)
T 1yse_A 9 NKPLEQQVSTNTEVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPE 88 (141)
T ss_dssp ----------CCSCCTHHHHHHHHHHHHHTCCHHHHHHHHCCSCTTHHHHHHHHCCCGGGCCHHHHHHHHHHHHHHHSCH
T ss_pred cCCccccccccccchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHHcCCCCcHHHHHHHHHHHHHHHHHhcCCH
Confidence 456778888 99999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHhc
Q psy3393 422 FQRMSALRLAG 432 (433)
Q Consensus 422 deRmeILRl~~ 432 (433)
+||++||+++.
T Consensus 89 ~eR~eIl~~e~ 99 (141)
T 1yse_A 89 AERDRIYQDER 99 (141)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHHHHh
Confidence 99999999874
No 7
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=99.92 E-value=1.4e-25 Score=189.44 Aligned_cols=79 Identities=30% Similarity=0.453 Sum_probs=73.6
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhc---CCCC-----cccccchhHHHHHHHhhcC
Q psy3393 347 GNSGELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLR---NPKP-----WSKLKSGRETFRRMWKWLQ 418 (433)
Q Consensus 347 ~~i~d~~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLr---nPKP-----W~kLksGRE~YiRMyNWLq 418 (433)
...++.+..||++||++|++|||+++|+|++||++|||||||||||||| +||| |++|+ ||||||+
T Consensus 9 ~k~~~~~~~~Tk~i~~~I~~ELK~~~IsQa~FAk~vlnRsQGtLSelLR~~enPkP~~~~lW~~Lk-------~m~nWL~ 81 (101)
T 2csf_A 9 IKVDGANINITAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRTLWENLC-------TIRRFLN 81 (101)
T ss_dssp CCCCTTCCCCCTHHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCCTTCHHHHHHHH-------HHHHHHT
T ss_pred ccCCccccchHHHHHHHHHHHHHHcCCcHHHHHHHHHHhchhHHHHHHhcccCCCcchhhHHHHHH-------HHHHHHc
Confidence 3456666779999999999999999999999999999999999999999 9999 99998 9999999
Q ss_pred CCHHHHHHHHHHhc
Q psy3393 419 EPEFQRMSALRLAG 432 (433)
Q Consensus 419 lPEdeRmeILRl~~ 432 (433)
+||+|||+||..++
T Consensus 82 Lpe~eR~~I~~~E~ 95 (101)
T 2csf_A 82 LPQHERDVIYEEES 95 (101)
T ss_dssp SCHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999998764
No 8
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.91 E-value=1.5e-25 Score=197.00 Aligned_cols=82 Identities=93% Similarity=1.414 Sum_probs=77.5
Q ss_pred CCccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHHHHHHHHHHh
Q psy3393 352 LEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLA 431 (433)
Q Consensus 352 ~~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEdeRmeILRl~ 431 (433)
.++|||++||++|++||++++|+|++||++|||++|+++|++|++||||++|++|+++|+||||||++++++|++||++.
T Consensus 1 ~~~~dt~~i~~~i~~~l~~~~i~q~~fa~~ilg~sq~~ls~~l~~pkpw~~l~~g~~~y~rm~~WL~~pe~~r~~~l~~~ 80 (164)
T 2d5v_A 1 MEEINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLA 80 (164)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTCCHHHHHHHHTSCCHHHHHHHHHSCCCGGGCSTTHHHHHHHHHHHHSCHHHHHHHTTC-
T ss_pred CCccCHHHHHHHHHHHHHHcCCchHHHHHHHhcCCchhHHHHcCCCCCHHHHcccchHHHHHHHHHhccchhhhhhhhcc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cC
Q psy3393 432 GN 433 (433)
Q Consensus 432 ~c 433 (433)
.|
T Consensus 81 ~~ 82 (164)
T 2d5v_A 81 AC 82 (164)
T ss_dssp --
T ss_pred cc
Confidence 76
No 9
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=95.27 E-value=0.014 Score=53.75 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=48.6
Q ss_pred CCccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcC
Q psy3393 352 LEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQ 418 (433)
Q Consensus 352 ~~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLq 418 (433)
.-..|+.+|+.+|++.|++.+|+|..+|+.+ |+||.+||.+++...+-.. ..+. -+|.|+.
T Consensus 23 ~~~e~p~~l~~~Ik~~l~~~gitQ~~lA~~~-GiSqs~ISr~l~~~~~~~~--~kra---aly~W~~ 83 (194)
T 1ic8_A 23 LLQEDPWRVAKMVKSYLQQHNIPQREVVDTT-GLNQSHLSQHLNKGTPMKT--QKRA---ALYTWYV 83 (194)
T ss_dssp HTTSCHHHHHHHHHHHHHHTTCCHHHHHHHH-CCCHHHHHHHHHSBCCCCH--HHHH---HHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHcCCCHHHHHHHh-CCChHHHHHHHhcCccccc--cccc---cchhhHH
Confidence 3446999999999999999999999999987 9999999999998654221 2232 4677773
No 10
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=95.11 E-value=0.041 Score=39.28 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHH
Q psy3393 359 ELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEF 422 (433)
Q Consensus 359 eIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEd 422 (433)
+|.++|+++++..+++|+.||+.+ |+++.+|+.+.+.-..-.. . ..++-.+|..+.+
T Consensus 1 ~~~~~l~~~r~~~glsq~~lA~~~-gis~~~i~~~e~g~~~~~~-----~-l~~la~~l~~~~~ 57 (69)
T 1r69_A 1 SISSRVKSKRIQLGLNQAELAQKV-GTTQQSIEQLENGKTKRPR-----F-LPELASALGVSVD 57 (69)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHH-TSCHHHHHHHHTTSCSSCT-----T-HHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHcCCCCCch-----H-HHHHHHHHCcCHH
Confidence 367899999999999999999875 8999999999986433111 1 6677777777654
No 11
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=95.06 E-value=0.069 Score=39.01 Aligned_cols=61 Identities=10% Similarity=0.122 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHHH
Q psy3393 357 TKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQ 423 (433)
Q Consensus 357 TKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEde 423 (433)
.+.|.++|+++++..+++|+.||+.+ |+++.+|+.+.+.-... ..+.+.++-..|..+.++
T Consensus 8 ~~~~~~~l~~~r~~~glsq~~lA~~~-gis~~~i~~~e~g~~~~-----~~~~l~~la~~l~~~~~~ 68 (77)
T 2b5a_A 8 KRKFGRTLKKIRTQKGVSQEELADLA-GLHRTYISEVERGDRNI-----SLINIHKICAALDIPAST 68 (77)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHH-TCCHHHHHHHHTTCSCC-----BHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHCCCCCC-----CHHHHHHHHHHhCcCHHH
Confidence 45688999999999999999999875 89999999999854322 345677788888877543
No 12
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=94.92 E-value=0.081 Score=39.61 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHH
Q psy3393 356 NTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEF 422 (433)
Q Consensus 356 DTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEd 422 (433)
..+.|.++|++++++.+++|+.||+++ |+++.+|+.+.+.-... ..+.+.++-..|..+.+
T Consensus 8 ~~~~~g~~lk~~R~~~glsq~~lA~~~-gis~~~i~~~e~g~~~~-----~~~~l~~ia~~l~v~~~ 68 (82)
T 3s8q_A 8 LLSKVSFVIKKIRLEKGMTQEDLAYKS-NLDRTYISGIERNSRNL-----TIKSLELIMKGLEVSDV 68 (82)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHH-TCCHHHHHHHHTTCCCC-----BHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHh-CcCHHHHHHHHCCCCCC-----CHHHHHHHHHHHCcCHH
Confidence 357899999999999999999999975 89999999999854321 44677888888887754
No 13
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=94.89 E-value=0.03 Score=52.99 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcC
Q psy3393 356 NTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQ 418 (433)
Q Consensus 356 DTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLq 418 (433)
|.-+++.+|+.||...+|+|+..|+.. |+||.+||.+++++.+ ...+-...+|-|..
T Consensus 28 ~~~~~~~~Ik~~r~~~gltQ~evA~~t-GISqS~ISq~e~~g~~-----~t~~k~a~~y~Wy~ 84 (221)
T 2h8r_A 28 DPWRAAKMIKGYMQQHNIPQREVVDVT-GLNQSHLSQHLNKGTP-----MKTQKRAALYTWYV 84 (221)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHH-TCCHHHHHHHHTTCCC-----CCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCHHHHHHHh-CCCHHHHHHHHhCCCc-----hhHHHHHHHHHHHH
Confidence 667899999999999999999999976 9999999999996633 22222355566653
No 14
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=94.47 E-value=0.042 Score=39.04 Aligned_cols=59 Identities=25% Similarity=0.178 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHH
Q psy3393 358 KELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEF 422 (433)
Q Consensus 358 KeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEd 422 (433)
+++.++|++.++..+++|+.||+.+ |+++.+|+.+.+.-... ..+...++-..|..+.+
T Consensus 4 ~~~~~~l~~~r~~~g~s~~~lA~~~-gis~~~i~~~e~g~~~~-----~~~~l~~i~~~l~~~~~ 62 (68)
T 2r1j_L 4 QLMGERIRARRKKLKIRQAALGKMV-GVSNVAISQWERSETEP-----NGENLLALSKALQCSPD 62 (68)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHH-TSCHHHHHHHHTTSSCC-----BHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHcCCCCC-----CHHHHHHHHHHhCCCHH
Confidence 4688999999999999999999865 89999999999853321 23456677777776654
No 15
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=94.41 E-value=0.08 Score=39.77 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=38.8
Q ss_pred CccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 353 EEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 353 ~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
...+.++|.++|++.++..+++|+.||+++ |+++.+|+.+.+.
T Consensus 6 ~~~~~~~~~~~l~~~r~~~glsq~~lA~~~-gis~~~i~~~e~g 48 (88)
T 2wiu_B 6 KIYSPTQLANAMKLVRQQNGWTQSELAKKI-GIKQATISNFENN 48 (88)
T ss_dssp CBCSHHHHHHHHHHHHHHTTCCHHHHHHHH-TCCHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHcCCCHHHHHHHh-CCCHHHHHHHHcC
Confidence 346788999999999999999999999886 8899999999985
No 16
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=94.37 E-value=0.049 Score=39.61 Aligned_cols=59 Identities=25% Similarity=0.178 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHH
Q psy3393 358 KELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEF 422 (433)
Q Consensus 358 KeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEd 422 (433)
+++.++|++.++..+++|+.||+++ |+++.+|+.+.+.-... ..+...++-..|..+.+
T Consensus 4 ~~~~~~l~~~r~~~gls~~~lA~~~-gis~~~i~~~e~g~~~~-----~~~~l~~ia~~l~~~~~ 62 (76)
T 1adr_A 4 QLMGERIRARRKKLKIRQAALGKMV-GVSNVAISQWERSETEP-----NGENLLALSKALQCSPD 62 (76)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHH-TSCHHHHHHHHTTSSCC-----CHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHcCCCCC-----CHHHHHHHHHHHCcCHH
Confidence 4688999999999999999999875 89999999999853321 33456677777776654
No 17
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=94.35 E-value=0.13 Score=37.57 Aligned_cols=60 Identities=10% Similarity=0.039 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCC-CcccccchhHHHHHHHhhcCCCHH
Q psy3393 357 TKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPK-PWSKLKSGRETFRRMWKWLQEPEF 422 (433)
Q Consensus 357 TKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPK-PW~kLksGRE~YiRMyNWLqlPEd 422 (433)
...+.++|++.++..+++|+.||++ +|+++.+|+.+.+.-. .. ..+...++-..|..+.+
T Consensus 5 ~~~~~~~l~~~r~~~g~sq~~lA~~-~gis~~~i~~~e~g~~~~~-----~~~~l~~ia~~l~~~~~ 65 (78)
T 3b7h_A 5 GEFVSEHLMELITQQNLTINRVATL-AGLNQSTVNAMFEGRSKRP-----TITTIRKVCGTLGISVH 65 (78)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHH-HTCCHHHHHHHHCTTCCCC-----CHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHcCCCCCC-----CHHHHHHHHHHcCCCHH
Confidence 4679999999999999999999986 5899999999998644 22 23456666666666543
No 18
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=94.03 E-value=0.08 Score=41.09 Aligned_cols=60 Identities=7% Similarity=0.043 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCH
Q psy3393 356 NTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPE 421 (433)
Q Consensus 356 DTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPE 421 (433)
+.+.|.++|++.++..+++|+.||+++ |+++.||+.+.+.-... ..+...++-..|..+.
T Consensus 6 ~~~~~~~~lk~~r~~~glsq~~lA~~~-gis~~~is~~e~G~~~p-----~~~~l~~ia~~l~v~~ 65 (94)
T 2kpj_A 6 QKAIFSENLNSYIAKSEKTQLEIAKSI-GVSPQTFNTWCKGIAIP-----RMGKVQALADYFNINK 65 (94)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHHHH-TCCHHHHHHHHTTSCCC-----CHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHhCCCCC-----CHHHHHHHHHHHCcCH
Confidence 356899999999999999999999875 89999999999853221 2445566666666554
No 19
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=93.78 E-value=0.16 Score=40.65 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHH
Q psy3393 356 NTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEF 422 (433)
Q Consensus 356 DTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEd 422 (433)
..+.|.++|++++++.+++|+.||+++ |+++.+|+.+.+.-+. -..+...++-+.|..+.+
T Consensus 25 ~~~~ig~~lr~~R~~~gltq~elA~~~-gis~~~is~iE~G~~~-----ps~~~l~~ia~~l~v~~~ 85 (99)
T 3g5g_A 25 LLSKVSFVIKKIRLEKGMTQEDLAYKS-NLDRTYISGIERNSRN-----LTIKSLELIMKGLEVSDV 85 (99)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHH-TCCHHHHHHHHTTCSC-----CBHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHCCCCC-----CCHHHHHHHHHHHCcCHH
Confidence 456899999999999999999999975 8999999999985421 245677888888888753
No 20
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=93.74 E-value=0.17 Score=36.28 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHH
Q psy3393 359 ELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEF 422 (433)
Q Consensus 359 eIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEd 422 (433)
.+.++|++.++..+++|+.||+. +|+++.+|+.+.+.-..-.. ...++-..|..+.+
T Consensus 3 ~~~~~l~~~r~~~glsq~~lA~~-~gis~~~i~~~e~g~~~~~~------~l~~i~~~l~~~~~ 59 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATK-AGVKQQSIQLIEAGVTKRPR------FLFEIAMALNCDPV 59 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHH-HTSCHHHHHHHHTTCCSSCS------THHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH-hCCCHHHHHHHHcCCCCChH------HHHHHHHHHCCCHH
Confidence 47899999999999999999986 58999999999985433111 15666666666643
No 21
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=93.61 E-value=0.16 Score=37.90 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHHH
Q psy3393 356 NTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQ 423 (433)
Q Consensus 356 DTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEde 423 (433)
+...|..+|++.++..+++|+.||++ +|+++.+|+.+.+.-.. -..+...++-..|..+.++
T Consensus 11 ~~~~~~~~l~~~R~~~gltq~elA~~-~gis~~~is~~e~g~~~-----~~~~~l~~l~~~l~~~~~~ 72 (83)
T 3f6w_A 11 RYQALLDLLLEARSAAGITQKELAAR-LGRPQSFVSKTENAERR-----LDVIEFMDFCRGIGTDPYA 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHH-HTSCHHHHHHHHTTSSC-----CCHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHCCCCC-----CCHHHHHHHHHHcCCCHHH
Confidence 45678999999999999999999998 48999999999986432 2345777788888877654
No 22
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=93.48 E-value=0.16 Score=37.76 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHHH
Q psy3393 360 LAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQ 423 (433)
Q Consensus 360 Ia~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEde 423 (433)
|.++|++++++.+++|+.||++ +|+++.+|+.+.+.-.. -..+...++-+.|..+.++
T Consensus 3 ~~~~lk~~r~~~glsq~~lA~~-~gis~~~i~~~e~g~~~-----p~~~~l~~ia~~l~v~~~~ 60 (77)
T 2k9q_A 3 LSNELKVERIRLSLTAKSVAEE-MGISRQQLCNIEQSETA-----PVVVKYIAFLRSKGVDLNA 60 (77)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHH-HTSCHHHHHHHHTCCSC-----CHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHH-hCCCHHHHHHHHcCCCC-----CCHHHHHHHHHHhCcCHHH
Confidence 7889999999999999999987 48899999999985322 2345677777777777543
No 23
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=93.45 E-value=0.082 Score=38.20 Aligned_cols=60 Identities=10% Similarity=0.032 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCH
Q psy3393 356 NTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPE 421 (433)
Q Consensus 356 DTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPE 421 (433)
+.+.+.++|+++++..+++|+.||++ +|+++.+|+.+.+.-+.. ..+...++-..|..+.
T Consensus 10 ~~~~~~~~l~~~r~~~g~s~~~lA~~-~gis~~~i~~~e~g~~~~-----~~~~l~~l~~~l~~~~ 69 (74)
T 1y7y_A 10 DLVKFGQRLRELRTAKGLSQETLAFL-SGLDRSYVGGVERGQRNV-----SLVNILKLATALDIEP 69 (74)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHH-HTCCHHHHHHHHTTCSCC-----BHHHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHCCCCCC-----CHHHHHHHHHHhCcCH
Confidence 45889999999999999999999985 589999999999853322 2344566666665543
No 24
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=93.26 E-value=0.062 Score=41.05 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=39.6
Q ss_pred CCCccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCC
Q psy3393 351 ELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNP 397 (433)
Q Consensus 351 d~~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnP 397 (433)
+....+...+.++|++++++.+++|+.||++ +|+++.+|+.+.+.-
T Consensus 10 ~~~~~~~~~~~~~l~~~r~~~glsq~elA~~-~gis~~~is~~e~g~ 55 (83)
T 2a6c_A 10 HHHMKMRSQLLIVLQEHLRNSGLTQFKAAEL-LGVTQPRVSDLMRGK 55 (83)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCCHHHHHHH-HTSCHHHHHHHHTTC
T ss_pred cCCccccHHHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHcCC
Confidence 3445567889999999999999999999976 589999999999853
No 25
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=92.87 E-value=0.13 Score=38.58 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCH
Q psy3393 356 NTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPE 421 (433)
Q Consensus 356 DTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPE 421 (433)
+-..+.++|++.+++.+++|+.||+. +|+++.+|+.+.+.-...+ .+...++-..|..+.
T Consensus 9 ~~~~l~~~l~~~r~~~gltq~~lA~~-~gvs~~~is~~e~g~~~~~-----~~~~~~ia~~l~v~~ 68 (80)
T 3kz3_A 9 DARRLKAIWEKKKNELGLSYESVADK-MGMGQSAVAALFNGINALN-----AYNAALLAKILKVSV 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHH-TTSCHHHHHHHHTTSSCCC-----HHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHH-hCcCHHHHHHHHcCCCCCC-----HHHHHHHHHHhCCCH
Confidence 34578889999999999999999965 5789999999998654332 256667777777654
No 26
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=92.82 E-value=0.24 Score=39.92 Aligned_cols=58 Identities=14% Similarity=-0.020 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCC
Q psy3393 357 TKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEP 420 (433)
Q Consensus 357 TKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlP 420 (433)
.+.|.++|++++++.+++|+.||++ +|+++.+|+.+.+.-... ..+...++-..|..+
T Consensus 19 ~~~~g~~lr~~R~~~gltq~elA~~-~gis~~~is~~E~G~~~p-----~~~~l~~ia~~l~v~ 76 (114)
T 3vk0_A 19 RAVLAYNMRLFRVNKGWSQEELARQ-CGLDRTYVSAVERKRWNI-----ALSNIEKMAAALGVA 76 (114)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHH-HTCCHHHHHHHTTTCCCC-----CHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHcCCCCC-----CHHHHHHHHHHhCCC
Confidence 3578999999999999999999998 589999999999853321 224445554444444
No 27
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=92.65 E-value=0.18 Score=36.30 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHhhhhc--ccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCC
Q psy3393 357 TKELAQRISAELKRYSIPQAIFAQRVLC--RSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEP 420 (433)
Q Consensus 357 TKeIa~rIkewLkr~~IsQavFAekILg--RSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlP 420 (433)
.+.+.++|++.++..+++|+.||+++ | +++.+|+.+.+.-... ..+...++-+.|..+
T Consensus 6 ~~~~g~~l~~~r~~~glsq~~lA~~~-g~~is~~~i~~~e~g~~~~-----~~~~l~~la~~l~v~ 65 (71)
T 2ewt_A 6 AKQLGAKLRAIRTQQGLSLHGVEEKS-QGRWKAVVVGSYERGDRAV-----TVQRLAELADFYGVP 65 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHT-TTSSCHHHHHHHHHTCSCC-----CHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHH-CCcCCHHHHHHHHCCCCCC-----CHHHHHHHHHHHCcC
Confidence 35789999999999999999999986 6 9999999998853321 234555665655554
No 28
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=92.37 E-value=0.34 Score=37.24 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHH
Q psy3393 357 TKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEF 422 (433)
Q Consensus 357 TKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEd 422 (433)
.+.|.++|+++.+..+++|+.||++ +|+++.+|+.+-+.-.. -.-+.+.++-+.|..++.
T Consensus 12 ~~~~g~~l~~~R~~~gltq~elA~~-~gis~~~is~~E~G~~~-----p~~~~l~~ia~~l~v~~~ 71 (86)
T 3eus_A 12 HVYLCQRLRQARLDAGLTQADLAER-LDKPQSFVAKVETRERR-----LDVIEFAKWMAACEGLDV 71 (86)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHH-TTCCHHHHHHHHTTSSC-----CBHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHH-hCcCHHHHHHHHCCCCC-----CCHHHHHHHHHHcCCCcH
Confidence 4569999999999999999999986 48999999999875321 134567788888888753
No 29
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=92.10 E-value=0.13 Score=38.08 Aligned_cols=43 Identities=23% Similarity=0.127 Sum_probs=37.7
Q ss_pred ccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCC
Q psy3393 354 EINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNP 397 (433)
Q Consensus 354 ~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnP 397 (433)
..+...+..+|++.++..+++|+.||+. +|+++.+|+.+.+.-
T Consensus 5 ~~~~~~~~~~l~~~r~~~glsq~~lA~~-~gis~~~i~~~e~g~ 47 (84)
T 2ef8_A 5 DHRYRCLVQLLTKLRKEASLSQSELAIF-LGLSQSDISKIESFE 47 (84)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHH-HTCCHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHcCCCHHHHHHH-hCCCHHHHHHHHcCC
Confidence 3456889999999999999999999976 588999999999853
No 30
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=92.01 E-value=0.14 Score=41.69 Aligned_cols=44 Identities=9% Similarity=0.131 Sum_probs=39.0
Q ss_pred CCccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 352 LEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 352 ~~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
...+|...|.++|++.++..+++|+.||+++ |+++.+|+.+.+.
T Consensus 5 ~~~~~~~~~g~~lk~~R~~~glsq~~lA~~~-gis~~~is~~E~g 48 (126)
T 3ivp_A 5 EDKYDFRALGLAIKEARKKQGLTREQVGAMI-EIDPRYLTNIENK 48 (126)
T ss_dssp TTSCCTHHHHHHHHHHHHHTTCCHHHHHHHH-TCCHHHHHHHHHS
T ss_pred ccccCHHHHHHHHHHHHHHcCCCHHHHHHHh-CcCHHHHHHHHCC
Confidence 4567889999999999999999999999975 8899999988774
No 31
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=91.92 E-value=0.26 Score=34.58 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHH
Q psy3393 362 QRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEF 422 (433)
Q Consensus 362 ~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEd 422 (433)
++|++.+++.+++|+.||+.+ |+++.+|+.+.+.-... ..+...++-..|..+.+
T Consensus 4 ~~l~~~r~~~g~s~~~lA~~~-gis~~~i~~~e~g~~~~-----~~~~l~~i~~~l~~~~~ 58 (66)
T 2xi8_A 4 NNLKLIREKKKISQSELAALL-EVSRQTINGIEKNKYNP-----SLQLALKIAYYLNTPLE 58 (66)
T ss_dssp ECHHHHHHHTTCCHHHHHHHH-TSCHHHHHHHHTTSCCC-----CHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHcCCCCC-----CHHHHHHHHHHHCcCHH
Confidence 468899999999999999865 89999999999854322 34566777777776654
No 32
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=90.91 E-value=0.15 Score=40.12 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=44.1
Q ss_pred ccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHHHHHHHHH
Q psy3393 354 EINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALR 429 (433)
Q Consensus 354 ~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEdeRmeILR 429 (433)
.++...+.++|++..+..+++|+.||++ +|+++.||+.+-+.-..- . .+ ..++-..|..+.+.-.+++.
T Consensus 25 ~m~~~~~~~~lk~~R~~~glsq~elA~~-lgvs~~~is~~E~G~~~p---~--~~-~~~l~~~l~~~~~~l~~~~~ 93 (99)
T 2ppx_A 25 QLASAPRMPRIKIIRRALKLTQEEFSAR-YHIPLGTLRDWEQGRSEP---D--QP-ARAYLKIIAVDPEGTAAALR 93 (99)
T ss_dssp -------CCHHHHHHHHTTCCHHHHHHH-HTCCHHHHHHHHTTSSCC---C--HH-HHHHHHHHHHCHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHcCCCHHHHHHH-hCcCHHHHHHHHcCCCCC---C--HH-HHHHHHHHCcCHHHHHHHHH
Confidence 3455678889999999999999999987 589999999998742211 1 01 34555556666555555543
No 33
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=90.78 E-value=0.21 Score=41.03 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCC
Q psy3393 357 TKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEP 420 (433)
Q Consensus 357 TKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlP 420 (433)
.++|.++||++.++.+++|+.+|+++ |+++.+++.+=+. ++ --.++.++-.-|.+.
T Consensus 34 ~~~lG~~ir~~R~~~glTQ~eLA~~~-gvs~~~is~~E~G-~~------~~~~l~~i~~aL~~~ 89 (101)
T 4ghj_A 34 AEEIGDRLKQARLNRDLTQSEVAEIA-GIARKTVLNAEKG-KV------QLDIMIAILMALDLT 89 (101)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHH-TSCHHHHHHHHTT-CC------BHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHc-CCCHHHHHHHHCC-CC------CHHHHHHHHHHcCCC
Confidence 46789999999999999999999875 8999999998763 11 113566666666553
No 34
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=90.26 E-value=0.2 Score=38.33 Aligned_cols=57 Identities=9% Similarity=0.103 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCC
Q psy3393 358 KELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEP 420 (433)
Q Consensus 358 KeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlP 420 (433)
..|.++|+++++..+++|+.||+++ |+++.+|+.+.+.-.. -..+...++-..|..+
T Consensus 12 ~~~~~~l~~~r~~~glsq~~lA~~~-gis~~~is~~e~g~~~-----p~~~~l~~la~~l~v~ 68 (91)
T 1x57_A 12 LEVGKVIQQGRQSKGLTQKDLATKI-NEKPQVIADYESGRAI-----PNNQVLGKIERAIGLK 68 (91)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHH-TSCHHHHHHHHHTCSC-----CCHHHHHHHHHHHTBC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHcCCCC-----CCHHHHHHHHHHHCcC
Confidence 4599999999999999999999875 8999999999985321 1223455555555443
No 35
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=90.13 E-value=0.62 Score=35.21 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHH
Q psy3393 360 LAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEF 422 (433)
Q Consensus 360 Ia~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEd 422 (433)
...+||++.++.+++|+.||++ +|+++.+|+.+.+..+ -.-..+...++-+.|..+.+
T Consensus 11 ~~~~ik~~R~~~gltq~elA~~-~gis~~~is~~E~G~~----~~p~~~~l~~ia~~l~v~~~ 68 (78)
T 3qq6_A 11 IGQRIKQYRKEKGYSLSELAEK-AGVAKSYLSSIERNLQ----TNPSIQFLEKVSAVLDVSVH 68 (78)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHH-HTCCHHHHHHHHTTSC----CCCBHHHHHHHHHHHTCCHH
T ss_pred ccHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHcCCC----CCCCHHHHHHHHHHHCcCHH
Confidence 3589999999999999999985 5899999999998611 01234466667777776643
No 36
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=89.83 E-value=0.46 Score=37.77 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 359 ELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 359 eIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
.+.++|+++++..+++|+.||++ +|+++.||+.+.+.
T Consensus 9 ~~~~~l~~~r~~~glsq~~lA~~-~gis~~~i~~~e~g 45 (114)
T 3op9_A 9 QFAENLSRLKKEHGLKNHQIAEL-LNVQTRTVAYYMSG 45 (114)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHH-HTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHcC
Confidence 48899999999999999999986 48899999998874
No 37
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=89.77 E-value=0.6 Score=35.87 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCH
Q psy3393 358 KELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPE 421 (433)
Q Consensus 358 KeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPE 421 (433)
..+.++|++.++..+++|+.||+++ |+++.||+.+++.-..- ..+...++-..|..+.
T Consensus 7 ~~~g~~l~~~r~~~gltq~~lA~~~-gis~~~is~~e~g~~~~-----~~~~~~~i~~~l~v~~ 64 (94)
T 2ict_A 7 PRPGDIIQESLDELNVSLREFARAM-EIAPSTASRLLTGKAAL-----TPEMAIKLSVVIGSSP 64 (94)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHH-TCCHHHHHHHHHTSSCC-----CHHHHHHHHHHTCSCH
T ss_pred CChhHHHHHHHHHcCCCHHHHHHHh-CCCHHHHHHHHcCCCCC-----CHHHHHHHHHHHCcCH
Confidence 3467899999999999999999965 89999999999853311 1234445555454443
No 38
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=89.55 E-value=0.36 Score=38.51 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCH
Q psy3393 361 AQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPE 421 (433)
Q Consensus 361 a~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPE 421 (433)
.++|++++++.+++|+.||++ +|+++.||+.+.+.-. . ..++..|+-+.|..+.
T Consensus 26 ~~rLk~lR~~~glTq~eLA~~-~GiS~~tis~iE~G~~----~--s~~~l~kIa~~L~v~~ 79 (88)
T 3t76_A 26 YNKLWKLLIDRDMKKGELREA-VGVSKSTFAKLGKNEN----V--SLTVLLAICEYLNCDF 79 (88)
T ss_dssp CHHHHHHHHHTTCCHHHHHHH-HTCCHHHHHHHHTTCC----C--CHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHcCCC----c--CHHHHHHHHHHHCcCH
Confidence 379999999999999999985 6999999999999722 1 3456777777777664
No 39
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=89.36 E-value=0.75 Score=44.40 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=61.4
Q ss_pred cCHHHHHHHHHHHHHH------cCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHHHHHHHH
Q psy3393 355 INTKELAQRISAELKR------YSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSAL 428 (433)
Q Consensus 355 IDTKeIa~rIkewLkr------~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEdeRmeIL 428 (433)
+|.+.|.++||++.++ .+++|..+|++ +|+|+.+++.|=+--. ..-..++..++-.-|+++.+||...+
T Consensus 2 M~~~~lG~~Lr~lR~~~~~~~~~gLtqeelA~~-~gvS~~~is~iE~G~~----~~ps~~~l~~lA~aL~v~~~er~~L~ 76 (292)
T 3pxp_A 2 MERAAFGKLVQALRREHRDEKGRVWTQEVLAER-TQLPKRTIERIENGSL----AHLDADILLRLADALELTIGERREFF 76 (292)
T ss_dssp CCHHHHHHHHHHHHHTCBCTTSCBCCHHHHHHH-HTCCHHHHHHHHHTCC----SCCCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCccCcCCCCHHHHHHH-HCcCHHHHHHHHCCCC----CCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 5788999999999999 99999999976 5899999999876421 01245788899999999999999999
Q ss_pred HHhc
Q psy3393 429 RLAG 432 (433)
Q Consensus 429 Rl~~ 432 (433)
.+++
T Consensus 77 ~la~ 80 (292)
T 3pxp_A 77 FAAT 80 (292)
T ss_dssp HHHH
T ss_pred hhcc
Confidence 8875
No 40
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=89.33 E-value=0.044 Score=40.31 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCC
Q psy3393 359 ELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEP 420 (433)
Q Consensus 359 eIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlP 420 (433)
++.++|++.+++.+++|+.||++ +|+++.||+.+.+.-... ..+...++-..|..+
T Consensus 8 ~~~~~l~~~r~~~glsq~~lA~~-~gis~~~is~~e~g~~~~-----~~~~l~~ia~~l~v~ 63 (73)
T 3omt_A 8 KIFNRLKSVLAEKGKTNLWLTET-LDKNKTTVSKWCTNDVQP-----SLETLFDIAEALNVD 63 (73)
T ss_dssp CCCBCHHHHHHHHTCCHHHHHHH-TTCCHHHHHHHHTTSSCC-----CHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHcCCCCC-----CHHHHHHHHHHHCcC
Confidence 45578999999999999999986 489999999999854321 234455555555544
No 41
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=89.31 E-value=0.76 Score=36.65 Aligned_cols=60 Identities=18% Similarity=0.113 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCH
Q psy3393 356 NTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPE 421 (433)
Q Consensus 356 DTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPE 421 (433)
-.+.|..+|+++++..+++|+.||+. +|+++.+|+.+.+.-.. -..+...++-+.|..+.
T Consensus 25 ~~~~~g~~l~~~R~~~glsq~~lA~~-~gis~~~is~~E~g~~~-----~~~~~l~~la~~l~v~~ 84 (117)
T 3f52_A 25 LREALGAALRSFRADKGVTLRELAEA-SRVSPGYLSELERGRKE-----VSSELLASVCHALGASV 84 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHH-TTSCHHHHHHHHTTSSC-----CCHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHCCCCC-----CCHHHHHHHHHHhCCCH
Confidence 35689999999999999999999986 58999999999985431 12345566666666654
No 42
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=89.13 E-value=0.68 Score=36.05 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 360 LAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 360 Ia~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
+.++|+.+++..+++|+.||+.+ |+++.+|+.+.+.
T Consensus 2 ~~~~l~~~r~~~gltq~~lA~~~-gis~~~i~~~e~g 37 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKA-GVAKSYLSSIERN 37 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHH-TCCHHHHHHHHTT
T ss_pred hHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHcC
Confidence 46789999999999999999964 7899999999886
No 43
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=88.77 E-value=0.46 Score=35.60 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 361 AQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 361 a~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
.++|++..+..+++|+.||+.+ |+++.||+.+-+.
T Consensus 13 g~~lr~~R~~~gltq~elA~~~-gvs~~tis~~E~G 47 (73)
T 3fmy_A 13 PEFIVKVRKKLSLTQKEASEIF-GGGVNAFSRYEKG 47 (73)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHH-CSCTTHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHh-CcCHHHHHHHHcC
Confidence 4778999999999999999975 9999999998874
No 44
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=88.58 E-value=0.37 Score=40.26 Aligned_cols=38 Identities=32% Similarity=0.268 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 358 KELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 358 KeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
..|.++|++.++..+++|+.||++ +|++|.+|+.+.+.
T Consensus 39 ~~lg~~L~~~R~~~glTQ~eLA~~-lGis~~~Is~iE~G 76 (120)
T 2o38_A 39 LRLAYALNAVIDRARLSQAAAAAR-LGINQPKVSALRNY 76 (120)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHH-HTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHcC
Confidence 468899999999999999999986 59999999999984
No 45
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=88.19 E-value=0.39 Score=36.49 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCC
Q psy3393 357 TKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEP 420 (433)
Q Consensus 357 TKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlP 420 (433)
.+.|.+.+++.++..+++|+.||+. +|+++.+|+.+.+.-... ..+...++-..|..+
T Consensus 15 ~~~l~~~l~~~R~~~glsq~~lA~~-~gis~~~is~~e~g~~~~-----~~~~l~~ia~~l~v~ 72 (92)
T 1lmb_3 15 ARRLKAIYEKKKNELGLSQESVADK-MGMGQSGVGALFNGINAL-----NAYNAALLAKILKVS 72 (92)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHH-HTSCHHHHHHHHTTSSCC-----CHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHcCCCCC-----CHHHHHHHHHHHCCC
Confidence 3456666666679999999999976 589999999999853221 223444555554443
No 46
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=87.55 E-value=0.32 Score=37.69 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCC
Q psy3393 361 AQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPK 398 (433)
Q Consensus 361 a~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPK 398 (433)
-.+|+..|++.+++|+.+|+ .+|+++.||+.++++|.
T Consensus 11 ~~ri~~~l~~~glT~~~LA~-~~Gvs~stls~~~~~~~ 47 (74)
T 1neq_A 11 RADVIAGLKKRKLSLSALSR-QFGYAPTTLANALERHW 47 (74)
T ss_dssp HHHHHHHHHTTSCCHHHHHH-HHSSCHHHHHHTTTSSC
T ss_pred HHHHHHHHHHcCCCHHHHHH-HHCcCHHHHHHHHcCCC
Confidence 36788888899999999995 56899999999999743
No 47
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=87.46 E-value=0.3 Score=37.55 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 360 LAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 360 Ia~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
+.++|+++++..+++|+.||+.+ |+++.||+.+.+.
T Consensus 5 ~~~~l~~~r~~~gltq~~lA~~~-gis~~~is~~e~g 40 (99)
T 2l49_A 5 ISEKIVLMRKSEYLSRQQLADLT-GVPYGTLSYYESG 40 (99)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHH-CCCHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHcC
Confidence 56899999999999999999865 8899999999985
No 48
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=87.03 E-value=0.55 Score=34.05 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCC
Q psy3393 360 LAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEP 420 (433)
Q Consensus 360 Ia~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlP 420 (433)
+.++|++.++..+++|+.||+.+ |+++.+|+.+.+.-... ..+...++-..|..+
T Consensus 11 ~~~~l~~~r~~~g~s~~~lA~~~-gis~~~i~~~e~g~~~~-----~~~~l~~ia~~l~~~ 65 (76)
T 3bs3_A 11 MLNRIKVVLAEKQRTNRWLAEQM-GKSENTISRWCSNKSQP-----SLDMLVKVAELLNVD 65 (76)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHH-TCCHHHHHHHHTTSSCC-----CHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHcCCCCC-----CHHHHHHHHHHHCcC
Confidence 56789999999999999999765 89999999999854322 233455555555544
No 49
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=86.92 E-value=0.51 Score=40.62 Aligned_cols=40 Identities=10% Similarity=0.141 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCC
Q psy3393 357 TKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNP 397 (433)
Q Consensus 357 TKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnP 397 (433)
...|.++||+.+++.+++|+.||+++ |+|+.+|+.+.+.-
T Consensus 8 ~~~~g~~l~~~r~~~g~s~~~la~~~-gis~~~ls~~e~g~ 47 (198)
T 2bnm_A 8 STGFAELLKDRREQVKMDHAALASLL-GETPETVAAWENGE 47 (198)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHH-TCCHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHcCC
Confidence 56799999999999999999999986 89999999999863
No 50
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=86.57 E-value=0.53 Score=40.52 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCC
Q psy3393 358 KELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNP 397 (433)
Q Consensus 358 KeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnP 397 (433)
+.|.++||+.+++.+++|+.||++ +|+++.+|+.+.+.-
T Consensus 10 ~~~~~~l~~~r~~~gltq~~lA~~-~gis~~~is~~e~g~ 48 (192)
T 1y9q_A 10 SQIANQLKNLRKSRGLSLDATAQL-TGVSKAMLGQIERGE 48 (192)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHH-HSSCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHcCC
Confidence 578999999999999999999976 589999999999853
No 51
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=86.42 E-value=0.48 Score=37.20 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCC
Q psy3393 358 KELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNP 397 (433)
Q Consensus 358 KeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnP 397 (433)
..+.++|++.++..+++|+.||+.+ |+++.||+.+.+.-
T Consensus 17 ~~~g~~l~~~r~~~gltq~~lA~~~-gis~~~is~~e~g~ 55 (104)
T 3cec_A 17 IHPGEVIADILDDLDINTANFAEIL-GVSNQTIQEVINGQ 55 (104)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHH-TSCHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHcCC
Confidence 4567899999999999999999765 89999999999853
No 52
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=86.20 E-value=0.4 Score=42.44 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 356 NTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 356 DTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
|.+.|..+||+..++.+++|+.||+.+ +|+.+||.+-+.
T Consensus 2 ~~~~~g~~i~~~R~~~~~tq~~la~~~--~s~~~~s~~e~g 40 (293)
T 3u3w_A 2 QAEKLGSEIKKIRVLRGLTQKQLSENI--CHQSEVSRIESG 40 (293)
T ss_dssp -CHHHHHHHHHHHHHTTCCHHHHHTTT--SCHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHCCCCHHHHHHHh--CCHHHHHHHHCC
Confidence 567899999999999999999999999 899999998874
No 53
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=85.74 E-value=2.1 Score=35.38 Aligned_cols=68 Identities=12% Similarity=0.009 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCC-CCcccccchhHHHHHHHhhcCCCHHHHH
Q psy3393 357 TKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNP-KPWSKLKSGRETFRRMWKWLQEPEFQRM 425 (433)
Q Consensus 357 TKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnP-KPW~kLksGRE~YiRMyNWLqlPEdeRm 425 (433)
-+.|.++|+++.+..+++|..+|++ +|+++.+|+.|=+.- ++.-...--+....++-+.|.++.++=.
T Consensus 5 ~~~lG~~Lr~~R~~~glSq~eLA~~-~gis~~~is~iE~G~~~~~p~~~~~~~~l~~iA~~Lgv~~~~L~ 73 (112)
T 2wus_R 5 WKELGETFRKKREERRITLLDASLF-TNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPDEML 73 (112)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHH-SSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHCCCCCCCcchhHHHHHHHHHHHHhCcCHHHHH
Confidence 3578999999999999999999986 599999999998852 2221111134455567778888765433
No 54
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=84.76 E-value=0.63 Score=37.90 Aligned_cols=38 Identities=8% Similarity=0.040 Sum_probs=32.8
Q ss_pred HHHHHHHH-HHHHcCCChHHHHhhhhcccCchhhhhhcCC
Q psy3393 359 ELAQRISA-ELKRYSIPQAIFAQRVLCRSQGTLSDLLRNP 397 (433)
Q Consensus 359 eIa~rIke-wLkr~~IsQavFAekILgRSQGTLSDLLrnP 397 (433)
...++|++ .++..+++|..||+ .+|+++.+|+.+++.-
T Consensus 13 ~pG~~Lk~~lr~~~gltq~eLA~-~lGis~~~is~ie~G~ 51 (104)
T 3trb_A 13 HPGEILAEELGFLDKMSANQLAK-HLAIPTNRVTAILNGA 51 (104)
T ss_dssp CHHHHHHHHHHHTTSCCHHHHHH-HHTSCHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHH-HHCcCHHHHHHHHcCC
Confidence 35688986 69999999999996 5799999999999854
No 55
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=83.51 E-value=0.73 Score=37.09 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHH--HcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCH
Q psy3393 358 KELAQRISAELK--RYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPE 421 (433)
Q Consensus 358 KeIa~rIkewLk--r~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPE 421 (433)
..+..+|+++++ ..+++|+.||+. +|+++.+|+.+.+.-. .-..+...++-..|..+.
T Consensus 33 ~~~g~~lk~~R~~~~~glsq~elA~~-~gis~~~is~~E~G~~-----~p~~~~l~~ia~~l~v~~ 92 (107)
T 2jvl_A 33 KEVGKAIEQGRQKFEPTMTQAELGKE-IGETAATVASYERGTA-----TPDQNILSKMERVLNVKL 92 (107)
T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHH-HTCCHHHHHHHTTTCS-----CCCHHHHHHHHHTTTCBS
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHcCCC-----CCCHHHHHHHHHHHCcCH
Confidence 568999999999 999999999987 5899999999887422 112345566666666553
No 56
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=83.48 E-value=0.52 Score=41.67 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 359 ELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 359 eIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
+|.++|++.+++.+++|+.||+++ |+++.||+.+++.
T Consensus 17 ~~~~~l~~~r~~~g~t~~~lA~~~-gis~~~i~~~~~g 53 (236)
T 3bdn_A 17 RLKAIYEKKKNELGLSQESVADKM-GMGQSGVGALFNG 53 (236)
T ss_dssp HHHHHHHHHTTTTTCCSHHHHHHH-TSCHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHcC
Confidence 689999999999999999999875 8899999999986
No 57
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=82.09 E-value=1.3 Score=36.31 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 362 QRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 362 ~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
.+|+++.++.+++|+.||+. ||+++.||+.+-+.
T Consensus 74 ~~l~~~R~~~glsq~~la~~-~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 74 EFIVKVRKKLSLTQKEASEI-FGGGVNAFSRYEKG 107 (133)
T ss_dssp HHHHHHHHHTTCCHHHHHHH-HCSCTTHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHH-HCCCHHHHHHHHCC
Confidence 56899999999999999986 59999999998763
No 58
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=81.69 E-value=1.3 Score=36.61 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCC
Q psy3393 356 NTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNP 397 (433)
Q Consensus 356 DTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnP 397 (433)
+-..+-.++|+.|+ +|.|..||+.| |++|.|||.|.+.-
T Consensus 18 ~~~~~~~kLK~il~--GikQ~eLAK~i-GIsqsTLSaIenG~ 56 (83)
T 2l1p_A 18 SHTTVRNALKDLLK--DMNQSSLAKEC-PLSQSMISSIVNST 56 (83)
T ss_dssp CHHHHHHHHHHHHT--TSCHHHHHHHS-SSCHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHH--hcCHHHHHHHc-CCCHHHHHHHHcCC
Confidence 44445567777777 99999999865 99999999999953
No 59
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=80.74 E-value=0.6 Score=34.95 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC-CCCcccc
Q psy3393 362 QRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN-PKPWSKL 403 (433)
Q Consensus 362 ~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn-PKPW~kL 403 (433)
++|++.++..+ +|..||++ +|+++.+|+.+.+. -.|.+.+
T Consensus 2 ~~l~~~r~~~g-sq~~lA~~-lgvs~~~is~~e~g~~~p~~~l 42 (79)
T 3bd1_A 2 NAIDIAINKLG-SVSALAAS-LGVRQSAISNWRARGRVPAERC 42 (79)
T ss_dssp CHHHHHHHHHS-SHHHHHHH-HTCCHHHHHHHHHHTCCCGGGH
T ss_pred hHHHHHHHHhC-CHHHHHHH-HCCCHHHHHHHHHCCCCCHHHH
Confidence 36888899999 99999986 58999999999973 2444444
No 60
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=80.24 E-value=0.43 Score=34.47 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCccc--ccchhHHH
Q psy3393 363 RISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSK--LKSGRETF 410 (433)
Q Consensus 363 rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~k--LksGRE~Y 410 (433)
+|+..+.+.+ +|..+|+. ||++|.+||.+++..+.-.- -..|+..|
T Consensus 5 ~l~~~~~~~g-s~~~~A~~-lgis~~~vs~~~~~~~~~~l~~t~~G~~~~ 52 (67)
T 2pij_A 5 PLSKYLEEHG-TQSALAAA-LGVNQSAISQMVRAGRSIEITLYEDGRVEA 52 (67)
T ss_dssp EHHHHHHHTC-CHHHHHHH-HTSCHHHHHHHHHTTCCEEEEECTTSCEEE
T ss_pred HHHHHHHHcC-CHHHHHHH-HCcCHHHHHHHHcCCCCCCeEEccCceEeh
Confidence 5788899999 99999985 59999999999987655433 22565554
No 61
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=80.24 E-value=0.47 Score=41.95 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 356 NTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 356 DTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
+...|.++||+..++.+++|+.||+.+ +|+.+||.+-+.
T Consensus 2 ~~~~~g~~i~~~r~~~~~tq~~la~~~--~s~~~is~~e~g 40 (293)
T 2qfc_A 2 QAEKLGSEIKKIRVLRGLTQKQLSENI--CHQSEVSRIESG 40 (293)
T ss_dssp -CHHHHHHHHHHHHHHTCCTTTTTTTT--SCHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHH--cCHHHHHHHHCC
Confidence 456799999999999999999999999 899999999884
No 62
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=79.55 E-value=2.2 Score=36.45 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=33.7
Q ss_pred cCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 355 INTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 355 IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
.+.+++.++|++.++.. +|+.||+++ |+++.|++.+++.
T Consensus 5 ~~~~~~~~rl~~~r~~~--tq~elA~~~-Gis~~~i~~~e~g 43 (189)
T 2fjr_A 5 WSNVDVLDRICEAYGFS--QKIQLANHF-DIASSSLSNRYTR 43 (189)
T ss_dssp CCHHHHHHHHHHHHTCS--SHHHHHHHT-TCCHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHhhc--CHHHHHHHh-CcCHHHHHHHHhC
Confidence 35678999999998776 999999876 8899999999984
No 63
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=79.48 E-value=1.4 Score=37.61 Aligned_cols=64 Identities=13% Similarity=0.038 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHHHHHH
Q psy3393 357 TKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMS 426 (433)
Q Consensus 357 TKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEdeRme 426 (433)
.+.+.++|++++++.+++|+.||+. +|+++.+|+.+.+.-.. -..+...++-..|..+.++=.+
T Consensus 66 ~~~~g~~L~~~R~~~glTq~elA~~-lGis~s~is~~E~G~~~-----ps~~~l~~la~~lgv~~~~l~~ 129 (141)
T 3kxa_A 66 LKAGGETFVSLRMKKGFTQSELATA-AGLPQPYLSRIENSKQS-----LQDKTVQKLANALGVSPLEVRA 129 (141)
T ss_dssp HHHSSCCHHHHHHHTTCCHHHHHHH-TTCCHHHHHHHHHTCSC-----CCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHcCCCC-----CCHHHHHHHHHHHCCCHHHHHH
Confidence 3444567888999999999999985 58999999999985321 2345677777778877654333
No 64
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=79.12 E-value=3.7 Score=30.67 Aligned_cols=58 Identities=12% Similarity=-0.041 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHH
Q psy3393 358 KELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEF 422 (433)
Q Consensus 358 KeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEd 422 (433)
+.|.++|+++++.. +|+.||++ +|+++.+|+.+.+.-.+ .-..+...++-+.|..+.+
T Consensus 15 ~~~g~~l~~~R~~~--sq~~lA~~-~gis~~~is~~E~g~~~----~p~~~~l~~ia~~l~v~~~ 72 (86)
T 2ofy_A 15 QRLGELLRSARGDM--SMVTVAFD-AGISVETLRKIETGRIA----TPAFFTIAAVARVLDLSLD 72 (86)
T ss_dssp HHHHHHHHHHHTTS--CHHHHHHH-HTCCHHHHHHHHTTCCS----SCBHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHC--CHHHHHHH-hCCCHHHHHHHHcCCCC----CCCHHHHHHHHHHhCCCHH
Confidence 45888898888877 99999987 58999999999985431 1123456677777777644
No 65
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=78.12 E-value=0.44 Score=43.55 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 357 TKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 357 TKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
..+|.++||+.+++.+++|+.||++ +|+|+.|||.+.+.
T Consensus 28 ~~~~~~~l~~~r~~~g~t~~~la~~-~g~s~~~is~~e~g 66 (311)
T 4ich_A 28 SDELRRRVRGLIHSRPGAQREFAAA-IGLDESKLSKSLNG 66 (311)
T ss_dssp ----------------------------------------
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHH-hCCCHHHHHHHHcC
Confidence 5679999999999999999999975 58999999999984
No 66
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=77.12 E-value=0.97 Score=35.81 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=32.9
Q ss_pred HHHHHHHH-HHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 359 ELAQRISA-ELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 359 eIa~rIke-wLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
.+..+|++ +++..+++|+.||+. +|+++.||+.+.+.
T Consensus 10 ~~g~~l~~~~r~~~glsq~~lA~~-~gis~~~is~~e~g 47 (113)
T 2eby_A 10 TPGDILLYEYLEPLDLKINELAEL-LHVHRNSVSALINN 47 (113)
T ss_dssp CHHHHHHHHTTTTTTCCHHHHHHH-HTSCHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHcC
Confidence 47789997 899999999999985 58999999999985
No 67
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=76.90 E-value=0.48 Score=38.50 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 360 LAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 360 Ia~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
|.++|++++++.+++|+.||+. +|+++.+|+.+.+.
T Consensus 24 ~g~~Lk~~R~~~gltq~elA~~-~gis~~~is~~E~G 59 (111)
T 3mlf_A 24 AMKTLKELRTDYGLTQKELGDL-FKVSSRTIQNMEKD 59 (111)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHH-HTSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHCC
Confidence 4578999999999999999996 58999999999985
No 68
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=76.77 E-value=3.3 Score=34.55 Aligned_cols=65 Identities=11% Similarity=0.058 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCC-CcccccchhHHHHHHHhhcCCCHHHH
Q psy3393 359 ELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPK-PWSKLKSGRETFRRMWKWLQEPEFQR 424 (433)
Q Consensus 359 eIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPK-PW~kLksGRE~YiRMyNWLqlPEdeR 424 (433)
++.++||+..++.+++|+.+|++ +|+++.+++.+=+.-. |-..-.--+....++-+-|..+.++=
T Consensus 3 ~~G~~lr~~R~~~gltq~elA~~-~gis~~~is~iE~g~~~~~~~~~~~~~~l~~ia~~L~v~~~~l 68 (130)
T 3fym_A 3 TVGEALKGRRERLGMTLTELEQR-TGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQL 68 (130)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHH-HCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHCCCCCCCchhhhHHHHHHHHHHHhCCCHHHH
Confidence 47899999999999999999996 4999999999987531 22222234466777778888776553
No 69
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=74.02 E-value=1.6 Score=33.82 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCChHHHHhhhhcccCch----hhhhhcC
Q psy3393 360 LAQRISAELKRYSIPQAIFAQRVLCRSQGT----LSDLLRN 396 (433)
Q Consensus 360 Ia~rIkewLkr~~IsQavFAekILgRSQGT----LSDLLrn 396 (433)
|.++|++.++..+++|+.||+.+ |+++.+ ++.+.+.
T Consensus 2 ~g~~lk~~R~~~glsq~~lA~~~-gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 2 LIRRLKDARLRAGISQEKLGVLA-GIDEASASARMNQYEKG 41 (98)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHT-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHh-CCCcchhhhHHHHHHCC
Confidence 46889999999999999999865 889988 8888764
No 70
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=69.77 E-value=3.4 Score=37.51 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCC
Q psy3393 362 QRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPK 398 (433)
Q Consensus 362 ~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPK 398 (433)
++||+|+++++++|+..|+. ||+||.|++.+-+.-+
T Consensus 93 ~~lk~lR~~~glTQ~elA~~-LGvsr~tis~yE~G~r 128 (170)
T 2auw_A 93 EMFGDWMHRNNLSLTTAAEA-LGISRRMVSYYRTAHK 128 (170)
T ss_dssp HHHHHHHHHTTCCHHHHHHH-HTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCCCHHHHHHH-hCCCHHHHHHHHcCCC
Confidence 47999999999999999875 6889999999988544
No 71
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=69.51 E-value=2.9 Score=36.48 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHcCC--ChHHHHhhhhccc-Cchhhhhhc
Q psy3393 358 KELAQRISAELKRYSI--PQAIFAQRVLCRS-QGTLSDLLR 395 (433)
Q Consensus 358 KeIa~rIkewLkr~~I--sQavFAekILgRS-QGTLSDLLr 395 (433)
++|.++|++.+++.++ +|+.||+++ |++ +.|++..++
T Consensus 9 ~~i~~~i~~~~~~~g~~ps~~elA~~l-giss~~tv~~~~~ 48 (202)
T 1jhf_A 9 QEVFDLIRDHISQTGMPPTRAEIAQRL-GFRSPNAAEEHLK 48 (202)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHT-TCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHh-CCCChHHHHHHHH
Confidence 4688999999999999 999999876 666 899998876
No 72
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=61.30 E-value=5.9 Score=36.57 Aligned_cols=76 Identities=22% Similarity=0.219 Sum_probs=59.8
Q ss_pred CCccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhc---CCCCccccc-chhHHHHHHHhhcCCCHHHHHHH
Q psy3393 352 LEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLR---NPKPWSKLK-SGRETFRRMWKWLQEPEFQRMSA 427 (433)
Q Consensus 352 ~~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLr---nPKPW~kLk-sGRE~YiRMyNWLqlPEdeRmeI 427 (433)
-..++..|.+..+++.+ ..+.+|...|++ ||+|+.+|+.+|+ -|.++.++- .|+-.+.--...+.+++++++++
T Consensus 115 R~~L~~~E~a~~~~~l~-~~g~t~~~iA~~-lG~s~~~V~~~l~l~~l~~~v~~~l~~g~is~~~A~~L~~l~~~~q~~l 192 (230)
T 1vz0_A 115 REDLSPVEEARGYQALL-EMGLTQEEVARR-VGKARSTVANALRLLQLPPEALEALERGEITAGHARALLMLEPEDRLWG 192 (230)
T ss_dssp STTCCHHHHHHHHHHHH-HTTCCHHHHHHH-HTCCHHHHHHHHHGGGSCHHHHHHHHTTSSCHHHHHHHHTSCGGGHHHH
T ss_pred cCCCCHHHHHHHHHHHH-HcCCCHHHHHHH-HCcCHHHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHcCCcHHHHHH
Confidence 35788888999888887 889999999875 6899999987654 566777654 78877887888888888776666
Q ss_pred HH
Q psy3393 428 LR 429 (433)
Q Consensus 428 LR 429 (433)
++
T Consensus 193 ~~ 194 (230)
T 1vz0_A 193 LK 194 (230)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 73
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=59.75 E-value=5.3 Score=37.64 Aligned_cols=35 Identities=6% Similarity=0.023 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 360 LAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 360 Ia~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
|.++||+..+..+++|+.+|+.+ +|++++|.+=+.
T Consensus 4 ig~~lk~~R~~~gltq~~la~~~--is~~~is~~E~g 38 (317)
T 2awi_A 4 IGSVLKQIRQELNYHQIDLYSGI--MSKSVYIKVEAD 38 (317)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTTT--SCHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHh--cCHHHHHHHHCC
Confidence 67899999999999999999999 999999998774
No 74
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=55.00 E-value=2.5 Score=35.79 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCC
Q psy3393 360 LAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNP 397 (433)
Q Consensus 360 Ia~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnP 397 (433)
|.++|++.++..+++|+.||++ +|+|+.||+.+.+..
T Consensus 2 ig~~lk~~R~~~gltq~elA~~-lgis~~~vs~~e~G~ 38 (158)
T 2p5t_A 2 IGKNIKSLRKTHDLTQLEFARI-VGISRNSLSRYENGT 38 (158)
T ss_dssp --------------------------------------
T ss_pred hHHHHHHHHHHcCCCHHHHHHH-HCcCHHHHHHHHCCC
Confidence 5688999999999999999976 589999999998753
No 75
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=37.61 E-value=22 Score=30.10 Aligned_cols=37 Identities=22% Similarity=0.112 Sum_probs=31.5
Q ss_pred HHHHHHHHHHH------HcCCChHHHHhhhh--c--ccCchhhhhhc
Q psy3393 359 ELAQRISAELK------RYSIPQAIFAQRVL--C--RSQGTLSDLLR 395 (433)
Q Consensus 359 eIa~rIkewLk------r~~IsQavFAekIL--g--RSQGTLSDLLr 395 (433)
.+++||+..++ +..++|+.+|+.|= | +|+++|+.|-+
T Consensus 7 ~~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 7 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp CHHHHHHHHHHHCCCTTSCCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 47899999999 46899999999874 3 89999999986
No 76
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=35.85 E-value=24 Score=29.51 Aligned_cols=38 Identities=21% Similarity=0.113 Sum_probs=32.0
Q ss_pred HHHHHHHHHHH------HcCCChHHHHhhhh--c--ccCchhhhhhcC
Q psy3393 359 ELAQRISAELK------RYSIPQAIFAQRVL--C--RSQGTLSDLLRN 396 (433)
Q Consensus 359 eIa~rIkewLk------r~~IsQavFAekIL--g--RSQGTLSDLLrn 396 (433)
.+++||+..++ +..++|+.+|+.+= | +|+++|+.|-+.
T Consensus 5 ~~a~RL~~L~~~~~~~~~~~lT~~elA~~~~~~G~~iS~s~is~iE~G 52 (123)
T 3qwg_A 5 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSG 52 (123)
T ss_dssp CHHHHHHHHHHHSSCTTTCSCCHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhccCCCCCCCHHHHHHHHcccCCCcCHHHHHHHHcC
Confidence 47899999999 55799999999884 2 899999999863
No 77
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.22 E-value=38 Score=27.06 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHHHHHHHH
Q psy3393 358 KELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSAL 428 (433)
Q Consensus 358 KeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEdeRmeIL 428 (433)
.++.++..+.+.+ +..+-.-.+-.+.++...|.+||..- ..+..++|.-.-+|++-..++|.+.+
T Consensus 26 ~~L~~~a~~fi~~-nF~~v~~~~eFl~L~~~~L~~lL~sd-----v~~E~~vf~av~~Wv~~d~~~R~~~~ 90 (105)
T 2eqx_A 26 PELYTAAKHCAKT-HLAQLQNTEEFLHLPHRLLTDIISDG-----VPCSQNPTEAIEAWINFNKEEREAFA 90 (105)
T ss_dssp HHHHHHHHHHHHH-TCHHHHTSHHHHHSCHHHHHHHHHTC-----EETTSCHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHhcccHhhCCHHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCHHHHHHHH
Confidence 3444455555544 34444445677899999999999972 66888999999999999888887655
No 78
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=31.98 E-value=58 Score=22.37 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 359 ELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 359 eIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
+..+.|... ...+.+++..|+ .||+|+.||+..+++
T Consensus 19 ~~~~~i~~l-~~~g~s~~eIA~-~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 19 DLVSVAHEL-AKMGYTVQQIAN-ALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHHH-HHTTCCHHHHHH-HHTSCHHHHHHHHTC
T ss_pred HHHHHHHHH-HHcCCCHHHHHH-HHCcCHHHHHHHHHh
Confidence 344556655 457899999885 799999999988763
No 79
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=27.02 E-value=18 Score=31.14 Aligned_cols=62 Identities=27% Similarity=0.406 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHhhhh-----cccCchhhhhhc---CCCCcccccchhHHHHHHHhhcCCCHHH
Q psy3393 356 NTKELAQRISAELKRYSIPQAIFAQRVL-----CRSQGTLSDLLR---NPKPWSKLKSGRETFRRMWKWLQEPEFQ 423 (433)
Q Consensus 356 DTKeIa~rIkewLkr~~IsQavFAekIL-----gRSQGTLSDLLr---nPKPW~kLksGRE~YiRMyNWLqlPEde 423 (433)
|.++.|..+|.-.-..+++|.-.+..+- ..||.|++..-+ .+|.+.+|+.. |+.||+..|..
T Consensus 5 ~~~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPl------l~~Wl~e~e~~ 74 (151)
T 3d1n_I 5 EIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPV------LEKWLNEAELR 74 (151)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCCChhHHHHhchh------HHHHHHHHHhc
Confidence 3466777777777777888888776542 236777765543 44444444322 77899876644
No 80
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=26.07 E-value=26 Score=26.45 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=19.9
Q ss_pred CChHHHHhhhhcccCchhhhhhcCCC
Q psy3393 373 IPQAIFAQRVLCRSQGTLSDLLRNPK 398 (433)
Q Consensus 373 IsQavFAekILgRSQGTLSDLLrnPK 398 (433)
++|+-+|+ .+|+|+.|||.+|+...
T Consensus 1 ~T~~diA~-~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 1 MKLDEIAR-LAGVSRTTASYVINGKA 25 (65)
T ss_dssp CCHHHHHH-HHTSCHHHHHHHHHTCT
T ss_pred CCHHHHHH-HHCcCHHHHHHHHcCCC
Confidence 35667775 56999999999999764
No 81
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=25.93 E-value=1.4e+02 Score=26.50 Aligned_cols=47 Identities=21% Similarity=0.199 Sum_probs=33.4
Q ss_pred HHHHcCCCh--HHHHhhhhcccCchhhhhhcC----------CCCccccc-chhHHHHHHH
Q psy3393 367 ELKRYSIPQ--AIFAQRVLCRSQGTLSDLLRN----------PKPWSKLK-SGRETFRRMW 414 (433)
Q Consensus 367 wLkr~~IsQ--avFAekILgRSQGTLSDLLrn----------PKPW~kLk-sGRE~YiRMy 414 (433)
.|...++++ +..|+ .|++++.|++.+|++ +.-+=.|+ +|++.+.+++
T Consensus 17 ~l~~~~~~~~~~~La~-~l~vs~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~~ 76 (230)
T 1fx7_A 17 DLEEEGVTPLRARIAE-RLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVM 76 (230)
T ss_dssp HHHHHTSCCCHHHHHH-HHTCCHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHHH
T ss_pred HHhhcCCCCcHHHHHH-HHCcCHHHHHHHHHHHHHCCCEEEeCCccEEECHHHHHHHHHHH
Confidence 344457888 88887 568999999988753 43344567 7999887664
No 82
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=24.37 E-value=1.4e+02 Score=23.67 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=27.7
Q ss_pred CHHHHHHH-HHHHHHHcCCChHHHHhhhhcccCchhhhhhcC
Q psy3393 356 NTKELAQR-ISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 396 (433)
Q Consensus 356 DTKeIa~r-IkewLkr~~IsQavFAekILgRSQGTLSDLLrn 396 (433)
..+++-++ |++.|++++-++.. |-++||+++.||...|++
T Consensus 37 ~l~~~Er~~I~~aL~~~~GN~s~-AA~~LGISR~TLyrKLkk 77 (81)
T 1umq_A 37 SADRVRWEHIQRIYEMCDRNVSE-TARRLNMHRRTLQRILAK 77 (81)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHH-HHHHHTSCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCCCHHH-HHHHhCCCHHHHHHHHHH
Confidence 34455444 56778887766654 667899999998776654
No 83
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=24.06 E-value=68 Score=29.42 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=37.8
Q ss_pred CCCccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCC
Q psy3393 351 ELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNP 397 (433)
Q Consensus 351 d~~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnP 397 (433)
...+.+-.++..++... ...+.+|...|++ ||+|+.+||.+|+.-
T Consensus 4 Take~sl~eiG~ria~~-y~~g~tQ~eIA~~-lGiSr~~VSR~L~~A 48 (192)
T 1zx4_A 4 TALQHSIREIGLRLMRM-KNDGMSQKDIAAK-EGLSQAKVTRALQAA 48 (192)
T ss_dssp -CCSSCHHHHHHHHHHH-HHTTCCHHHHHHH-HTCCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH-HHcCCCHHHHHHH-hCcCHHHHHHHHHHh
Confidence 34677889999999877 7889999999975 899999999998653
No 84
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=23.93 E-value=30 Score=25.22 Aligned_cols=22 Identities=23% Similarity=0.065 Sum_probs=19.0
Q ss_pred CCChHHHHhhhhcccCchhhhhh
Q psy3393 372 SIPQAIFAQRVLCRSQGTLSDLL 394 (433)
Q Consensus 372 ~IsQavFAekILgRSQGTLSDLL 394 (433)
..+|..+|+ .||+||.+||...
T Consensus 10 ~~tq~~lA~-~lGvs~~~Vs~we 31 (61)
T 1rzs_A 10 FGTQRAVAK-ALGISDAAVSQWK 31 (61)
T ss_dssp HSSHHHHHH-HHTCCHHHHHHCC
T ss_pred cCCHHHHHH-HhCCCHHHHHHHH
Confidence 459999999 5699999999976
No 85
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=22.86 E-value=38 Score=25.87 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=23.2
Q ss_pred HHHHHHHcCCChHHHHhhhhcccCchhhhhhcCC
Q psy3393 364 ISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNP 397 (433)
Q Consensus 364 IkewLkr~~IsQavFAekILgRSQGTLSDLLrnP 397 (433)
|++.+.+ . +|...|+ .||++|.+||..++.-
T Consensus 7 Lk~l~~~-~-sq~~~A~-~Lgvsq~aVS~~~~~~ 37 (65)
T 2cw1_A 7 LKKFVED-K-NQEYAAR-ALGLSQKLIEEVLKRG 37 (65)
T ss_dssp HHHHHTT-S-CHHHHHH-HSSSCHHHHHHHHHTT
T ss_pred HHHHHHH-c-CHHHHHH-HhCCCHHHHHHHHHhc
Confidence 4444444 3 9999886 5899999999999754
No 86
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=22.13 E-value=80 Score=28.29 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=42.4
Q ss_pred CCccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhc---CCCCcccc-cchhHHHHH
Q psy3393 352 LEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLR---NPKPWSKL-KSGRETFRR 412 (433)
Q Consensus 352 ~~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLr---nPKPW~kL-ksGRE~YiR 412 (433)
-+.++..+.|..+++.+.. +.+|...|+ .||+|+.+|+.+|+ -|.+..++ ..|+-.+..
T Consensus 33 RedL~piE~A~a~~~L~~~-G~t~eeiA~-~lG~s~s~V~~~LrLl~Lp~~v~~~v~~g~is~~~ 95 (178)
T 1r71_A 33 RNELTPREIADFIGRELAK-GKKKGDIAK-EIGKSPAFITQHVTLLDLPEKIADAFNTGRVRDVT 95 (178)
T ss_dssp TTCCCHHHHHHHHHHHHHT-TCCHHHHHH-HHTCCHHHHHHHHGGGSCCHHHHHHHHTTSCCCHH
T ss_pred cCCCCHHHHHHHHHHHHHc-CCCHHHHHH-HHCcCHHHHHHHHHHHcCCHHHHHHHHcCCCCHHH
Confidence 3578999999999988876 899999887 57899999988876 34444333 245543433
No 87
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=21.94 E-value=2e+02 Score=25.80 Aligned_cols=63 Identities=14% Similarity=0.003 Sum_probs=51.7
Q ss_pred cCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHHH
Q psy3393 355 INTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQ 423 (433)
Q Consensus 355 IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEde 423 (433)
.+-.+++++|.+.-++.++++..+|++| |+|.-.+..+++-=. +--.+...|+-+-|.+++++
T Consensus 9 ~~~~~~~~~I~~AK~~KGLTwe~IAe~i-G~S~v~vtaa~lGQ~-----~ls~e~A~kLa~~LgL~~e~ 71 (156)
T 1dw9_A 9 NIRLDLADAILLSKAKKDLSFAEIADGT-GLAEAFVTAALLGQQ-----ALPADAARLVGAKLDLDEDS 71 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHTTS-SSCHHHHHHHHTTSS-----CCCHHHHHHHHHHTTCCHHH
T ss_pred ccHHHHHHHHHHHHHHcCCCHHHHHHHh-CcCHHHHHHHHcCCC-----CCCHHHHHHHHHHhCcCHHH
Confidence 5668999999999999999999999998 799999988887322 12345778888889999877
No 88
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=21.45 E-value=24 Score=28.63 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=32.3
Q ss_pred CCccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhc
Q psy3393 352 LEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLR 395 (433)
Q Consensus 352 ~~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLr 395 (433)
++++|.++++++|-+.|++++++-+..|+ -||+++.++...|+
T Consensus 10 ~~d~~~~~~~~~IL~lL~~~g~sa~eLAk-~LgiSk~aVr~~L~ 52 (82)
T 1oyi_A 10 IDERSNAEIVCEAIKTIGIEGATAAQLTR-QLNMEKREVNKALY 52 (82)
T ss_dssp ---CCSHHHHHHHHHHHSSSTEEHHHHHH-HSSSCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHcCCCHHHHHH-HHCcCHHHHHHHHH
Confidence 46779999999999999999966666665 47888887776654
No 89
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=21.00 E-value=86 Score=19.83 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCC
Q psy3393 363 RISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPK 398 (433)
Q Consensus 363 rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPK 398 (433)
.|...+ ..+.+++..|+ .||+|..||...++.-+
T Consensus 13 ~i~~~~-~~g~s~~~IA~-~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 13 QLDVMK-LLNVSLHEMSR-KISRSRHCIRVYLKDPV 46 (51)
T ss_dssp HHHHHH-HTTCCHHHHHH-HHTCCHHHHHHHHHCST
T ss_pred HHHHHH-HcCCCHHHHHH-HHCcCHHHHHHHHhhHH
Confidence 333333 46889888875 68999999999887654
No 90
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=20.80 E-value=96 Score=25.20 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCC
Q psy3393 357 TKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNP 397 (433)
Q Consensus 357 TKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnP 397 (433)
+++-..+|.++|...+++.+-+|+. +|+|..||+-.|+.+
T Consensus 5 ~~~R~~~I~~~l~~~~~ti~dlA~~-~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 5 IKERTIKIGKYIVETKKTVRVIAKE-FGVSKSTVHKDLTER 44 (93)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHH-HTSCHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHH-HCCCHHHHHHHHcCC
Confidence 4456678999999999999888874 699999999999974
No 91
>2ofz_A Nucleocapsid protein; SARS coronavirus nucleocapsid RNA binding N-terminal domain, N protein, SARS-ORF9A, viral protein; 1.17A {Sars coronavirus TOR2} PDB: 2og3_A
Probab=20.59 E-value=38 Score=30.32 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=15.4
Q ss_pred cccccCCCCCCcccceeeeecc
Q psy3393 147 SDKFAYGHTGNVTGSFTVMQNN 168 (433)
Q Consensus 147 SDKF~~~H~gnvsGsFtlmr~~ 168 (433)
|||.||+|..|...=||++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~vq~ 24 (138)
T 2ofz_A 3 SDKIHHHHHHNTASWFTALTQH 24 (138)
T ss_dssp CCBCCC----CCBCSBCCEECC
T ss_pred ccccccccccccceeeeeeeec
Confidence 8999998888888889988754
No 92
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=20.23 E-value=82 Score=27.63 Aligned_cols=42 Identities=10% Similarity=0.104 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCC
Q psy3393 356 NTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKP 399 (433)
Q Consensus 356 DTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKP 399 (433)
+..+|+++|.+++. .+.+.+..|+. ||.+..|+..+|+++..
T Consensus 160 ~~a~iv~~i~~~~~-~G~s~~~Ia~~-l~is~~tv~r~l~~~~~ 201 (209)
T 2r0q_C 160 QKRVIYHRVVEMLE-EGQAISKIAKE-VNITRQTVYRIKHDNGL 201 (209)
T ss_dssp HHHHHHHHHHHHHH-TTCCHHHHHHH-HTCCHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHH-cCCCHHHHHHH-HCcCHHHHHHHHhcccc
Confidence 46678899998876 58888888765 69999999999998865
Done!