RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3393
(433 letters)
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 80
Score = 141 bits (358), Expect = 2e-42
Identities = 75/79 (94%), Positives = 77/79 (97%)
Query: 354 EINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRM 413
EINTKE+AQRI+ ELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRM
Sbjct: 1 EINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRM 60
Query: 414 WKWLQEPEFQRMSALRLAG 432
WKWLQEPEFQRMSALRLA
Sbjct: 61 WKWLQEPEFQRMSALRLAA 79
>d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 126 bits (319), Expect = 1e-36
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 357 TKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKL-KSGRETFRRMWK 415
+ E+ Q + ELKR I QA+FA+ R+QG LS++LR + +S R M
Sbjct: 3 SSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQN 62
Query: 416 WLQEPEFQRMSALR 429
+LQ PE +R +
Sbjct: 63 FLQLPEAERDRIYQ 76
>d2csfa1 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 121 bits (304), Expect = 2e-34
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 351 ELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKL-KSGRET 409
T + I E+KR + QA+FA+ +SQG L +LLR + S ++ E
Sbjct: 6 GANINITAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRTLWEN 65
Query: 410 FRRMWKWLQEPEFQRM 425
+ ++L P+ +R
Sbjct: 66 LCTIRRFLNLPQHERD 81
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 118 bits (298), Expect = 2e-33
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 347 GNSGELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLK-S 405
G E E+++T E+A ++ +L +++I Q +F VL SQG++S++L PKPW KL
Sbjct: 1 GPGAEEEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVK 60
Query: 406 GRETFRRMWKWLQEPEFQRMSALRLA 431
G+E F +M ++L + Q + ALR
Sbjct: 61 GKEPFIKMKQFLSDE--QNVLALRTI 84
>d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 113 bits (285), Expect = 2e-31
Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 6/87 (6%)
Query: 345 SLGNSGELE-----EINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKP 399
S G+SG+ E E++T EL +++ +L + I Q IF ++VL SQG++SD+L PKP
Sbjct: 2 SSGSSGQYELYMYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKP 61
Query: 400 WSKL-KSGRETFRRMWKWLQEPEFQRM 425
WSKL + GRE F RM WL + Q +
Sbjct: 62 WSKLTQKGREPFIRMQLWLSDQLGQAV 88
>d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 111
Score = 109 bits (275), Expect = 6e-30
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 353 EEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLK-SGRETFR 411
E++T + +R+ L ++ Q +F + +L +QG++SDLL PKPW KL GRE F
Sbjct: 25 PELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFV 84
Query: 412 RMWKWLQEPEFQRM 425
RM WL +P
Sbjct: 85 RMQLWLNDPHNVEK 98
>gi|147919682|ref|YP_686574.1|(2-194:196) 50S ribosomal protein L15e
[uncultured methanogenic archaeon RC-I]
gi|121682947|sp|Q0W2Z5.1|RL15E_UNCMA RecName: Full=50S
ribosomal protein L15e gi|110621970|emb|CAJ37248.1|
50S ribosomal protein L15E [uncultured methanogenic
archaeon RC-I] E=2e-63 s/c=1.26 id=63% cov=99%
Length = 193
Score = 28.5 bits (64), Expect = 1.1
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 400 WSKLKSG--RETFR-RMWKWLQEPEFQRMS 426
W E F R+ +W +EP ++
Sbjct: 12 WKNPSKTYVGELFWERLQEWRKEPTVVKID 41
>d2q3za1 b.1.18.9 (A:15-145) Transglutaminase N-terminal domain
{Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Length = 131
Score = 27.6 bits (61), Expect = 1.6
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 292 TVVVSPQTSPQHS---LISNQLQRSDSPGP--PKIISQQTATLTLKTVTPTNAVVG 342
T V +P L+ + G ++ QQ TL+L+ TP NA +G
Sbjct: 44 TFSVVTGPAPSQEAGTKARFPLRDAVEEGDWTATVVDQQDCTLSLQLTTPANAPIG 99
>d1vqom1 d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 194
Score = 28.2 bits (63), Expect = 1.7
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 3/30 (10%)
Query: 400 WSKLKSG--RETFR-RMWKWLQEPEFQRMS 426
W G E R +W E +R+
Sbjct: 12 WENPGDGQLAELQWQRQQEWRNEGAVERIE 41
>d1vjja1 b.1.18.9 (A:1-140) Transglutaminase N-terminal domain
{Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Length = 140
Score = 27.1 bits (60), Expect = 2.3
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 292 TVVVSPQTSPQHS---LISNQLQRSDSPG-PPKIISQQTATLTLKTVTPTNAVVG 342
+VS P S L S G + + TLT+ +P +A +G
Sbjct: 54 EFIVSTGPYPSESAMTKAVFPLSNGSSGGWSAVLQASNGNTLTISISSPASAPIG 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.126 0.355
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,474,818
Number of extensions: 65003
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 15
Length of query: 433
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 345
Effective length of database: 1,199,356
Effective search space: 413777820
Effective search space used: 413777820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (24.9 bits)