BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3395
(775 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/762 (67%), Positives = 625/762 (82%), Gaps = 19/762 (2%)
Query: 3 GNPGLEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS 62
GN G+E LIP+VN+LQDAF+ +G +DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS
Sbjct: 22 GNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS 81
Query: 63 GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPIN 122
GIVTRRPLVLQL+NS TEYAEFLHCKGKKF DF+EVR EIEAETDR+TG+NKGIS VPIN
Sbjct: 82 GIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPIN 141
Query: 123 LRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL 182
LRVYSP+VLN+TL+DLPG+TKVPVGDQP DIE QI+DML QF+TKE CLILAV+PAN+DL
Sbjct: 142 LRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL 201
Query: 183 ATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLILA 242
A SDAL+IAK+VDP V +TK+ + D+ D +++ +L ++R ++
Sbjct: 202 ANSDALKIAKEVDPQGQRTIGV----ITKLDLMDEGTDARDVLENKLLP-LRRGYIGVVN 256
Query: 243 VTPANSDLANSDALKLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGL 302
+ + D LA E HPSYRHLADR+GTPYLQ+VLNQQLTNHIRDTLPGL
Sbjct: 257 RSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGL 316
Query: 303 RDRLQKQLLTLEKDVEQFKHFRPDDPSIKTKAMLQMIQQLQSDFERTIEGSGSAQINTME 362
R++LQ QLL++EK+V+++K+FRPDDP+ KTKA+LQM+QQ DFE+ IEGSG QI+T E
Sbjct: 317 RNKLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGD-QIDTYE 375
Query: 363 LSGGAKINRLFHERFPFEIVKMEFDEKELRREIAFAIRNIHGIRVGLFTPDMAFEAIVKK 422
LSGGA+INR+FHERFPFE+VKMEFDEKELRREI++AI+NIH IR GLFTPD+AFEA VKK
Sbjct: 376 LSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVKK 435
Query: 423 QISRLKEPALKCVDLVVAELSNVVRICTDKMSRYPRLREETERIITSYVRNREQQCKEQI 482
Q+ +LKEP++KCVD+VV+EL++ +R C++K+ +YPRLREE ERI+T+++R RE + KEQ+
Sbjct: 436 QVQKLKEPSIKCVDMVVSELTSTIRKCSEKLQQYPRLREEMERIVTTHIREREGRTKEQV 495
Query: 483 VLLVDCELAYMNTNHEDFIGFANVMFSAQQTTDNSNKAGRKLGNQ----VIRKGWMCIHN 538
+LL+D ELAYMNTNHEDFIGFAN AQQ ++ NK + GNQ VIRKGW+ I+N
Sbjct: 496 MLLIDIELAYMNTNHEDFIGFAN----AQQRSNQMNKK-KTSGNQDEILVIRKGWLTINN 550
Query: 539 LGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMSRRHTFALFN 598
+GIMKGGS++YWFVLT+EN+SW+KD+EE+EKKYML +D LKLRDVE+GFMS +H FALFN
Sbjct: 551 IGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFN 610
Query: 599 PEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYPEKSTDQSNGDEGGTEGTS----S 654
E RNVYKDY+QLEL+CE Q++VDSWKASFLRAGVYPE+ D+ E G+ S
Sbjct: 611 TEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGDKEKASETEENGSDSFMHS 670
Query: 655 MDPQLERQVETIRNLVDSYMKIVTKTCRDLVPKTIMLLIINNAKDFINGELLAHLYASGD 714
MDPQLERQVETIRNLVDSYM IV KT RDL+PKTIM L+INN K+FI ELLA+LY+ GD
Sbjct: 671 MDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGD 730
Query: 715 QAAMMEESPEEALKREEMLRMYHACKEALRIIGDVSMATVST 756
Q +MEES E+A +R+EMLRMYHA KEAL IIGD++ TVST
Sbjct: 731 QNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTTTVST 772
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 1027 bits (2655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/752 (66%), Positives = 611/752 (81%), Gaps = 19/752 (2%)
Query: 7 LEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66
+E LIP+VN+LQDAF+ +G +DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT
Sbjct: 3 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 62
Query: 67 RRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVY 126
RRPLVLQL+N+ TEYAEFLHCKGKKF DF+EVR EIEAETDR+TG+NKGIS VPINLRVY
Sbjct: 63 RRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVY 122
Query: 127 SPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD 186
SP+VLN+TL+DLPG+TKVPVGDQP DIE QI+DML QF+TKE CLILAV+PAN+DLA SD
Sbjct: 123 SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 182
Query: 187 ALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLILAVTPA 246
AL++AK+VDP V +TK+ + D+ D +++ +L ++R ++ +
Sbjct: 183 ALKVAKEVDPQGQRTIGV----ITKLDLMDEGTDARDVLENKLLP-LRRGYIGVVNRSQK 237
Query: 247 NSDLANSDALKLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRL 306
+ D LA E HPSYRHLADR+GTPYLQ+VLNQQLTNHIRDTLPGLR++L
Sbjct: 238 DIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKL 297
Query: 307 QKQLLTLEKDVEQFKHFRPDDPSIKTKAMLQMIQQLQSDFERTIEGSGSAQINTMELSGG 366
Q QLL++EK+VE++K+FRPDDP+ KTKA+LQM+QQ DFE+ IEGSG QI+T ELSGG
Sbjct: 298 QSQLLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGD-QIDTYELSGG 356
Query: 367 AKINRLFHERFPFEIVKMEFDEKELRREIAFAIRNIHGIRVGLFTPDMAFEAIVKKQISR 426
A+INR+FHERFPFE+VKMEFDEKELRREI++AI+N GLFTPDMAFE IVKKQ+ +
Sbjct: 357 ARINRIFHERFPFELVKMEFDEKELRREISYAIKNAAAAATGLFTPDMAFETIVKKQVKK 416
Query: 427 LKEPALKCVDLVVAELSNVVRICTDKMSRYPRLREETERIITSYVRNREQQCKEQIVLLV 486
++EP LKCVD+V++EL + VR CT K+ +YPRLREE ERI+T+++R RE + KEQ++LL+
Sbjct: 417 IREPCLKCVDMVISELISTVRQCTKKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLI 476
Query: 487 DCELAYMNTNHEDFIGFANVMFSAQQTTDNSNKAGRKLGNQ----VIRKGWMCIHNLGIM 542
D ELAYMNTNHEDFIGFAN AQQ ++ NK + GNQ VIRKGW+ I+N+GIM
Sbjct: 477 DIELAYMNTNHEDFIGFAN----AQQRSNQMNKK-KTSGNQDEILVIRKGWLTINNIGIM 531
Query: 543 KGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGR 602
KGGS++YWFVLT+EN+SW+KD+EE+EK+YML +D LKLRDVE+GFMS +H FALFN E R
Sbjct: 532 KGGSKEYWFVLTAENLSWYKDDEEKEKEYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQR 591
Query: 603 NVYKDYKQLELSCENQDDVDSWKASFLRAGVYPEKSTDQSNGDEGGTEGTS----SMDPQ 658
NVYKDY+QLEL+CE Q++VDSWKASFLRAGVYPE+ D+ E G+ SMDPQ
Sbjct: 592 NVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGDKEKASETEENGSDSFMHSMDPQ 651
Query: 659 LERQVETIRNLVDSYMKIVTKTCRDLVPKTIMLLIINNAKDFINGELLAHLYASGDQAAM 718
LERQVETIRNLVDSYM IV KT RDL+PKTIM L+INN K+FI ELLA+LY+ GDQ +
Sbjct: 652 LERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTL 711
Query: 719 MEESPEEALKREEMLRMYHACKEALRIIGDVS 750
MEES E+A +R+EMLRMYHA KEAL IIGD++
Sbjct: 712 MEESAEQAQRRDEMLRMYHALKEALSIIGDIN 743
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/339 (63%), Positives = 266/339 (78%), Gaps = 7/339 (2%)
Query: 7 LEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66
+E LIP+VN+LQDAF+ +G +DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT
Sbjct: 6 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 65
Query: 67 RRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVY 126
RRPLVLQL+N+ TEYAEFLHCKGKKF DF+EVR EIEAETDR+TG+NKGIS VPINLRVY
Sbjct: 66 RRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVY 125
Query: 127 SPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD 186
SP+VLN+TL+DLPG+TKVPVGDQP DIE QI+DML QF+TKE CLILAV+PAN+DLA SD
Sbjct: 126 SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 185
Query: 187 ALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLILAVTPA 246
AL++AK+VDP V +TK+ + D+ D +++ +L ++R ++ +
Sbjct: 186 ALKVAKEVDPQGQRTIGV----ITKLDLMDEGTDARDVLENKLLP-LRRGYIGVVNRSQK 240
Query: 247 NSDLANSDALKLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRL 306
+ D LA E HPSYRHLADR+GTPYLQ+VLNQQLTNHIRDTLPGLR++L
Sbjct: 241 DIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKL 300
Query: 307 QKQLLTLEKDVEQFKHFRPDDPSIKTKA--MLQMIQQLQ 343
Q QLL++EK+VE++K+FRPD ++ ML+M L+
Sbjct: 301 QSQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALK 339
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 730 EEMLRMYHACKEALRIIGDVSMATV 754
+EMLRMYHA KEAL IIG+++ TV
Sbjct: 329 DEMLRMYHALKEALSIIGNINTTTV 353
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/319 (66%), Positives = 254/319 (79%), Gaps = 5/319 (1%)
Query: 8 EQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 67
E LIP+VN+LQDAF+ +G +DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR
Sbjct: 7 EDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 68 RPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYS 127
RPLVLQL+N+ TEYAEFLHCKGKKF DF+EVR EIEAETDR+TG+NKGIS VPINLRVYS
Sbjct: 67 RPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYS 126
Query: 128 PNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA 187
P+VLN+TL+DLPG TKVPVGDQP DIE QI+D L QF+TKE CLILAV+PAN+DLA SDA
Sbjct: 127 PHVLNLTLVDLPGXTKVPVGDQPPDIEFQIRDXLXQFVTKENCLILAVSPANSDLANSDA 186
Query: 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLILAVTPAN 247
L++AK+VDP V +TK+ + D+ D +++ +L ++R ++ + +
Sbjct: 187 LKVAKEVDPQGQRTIGV----ITKLDLXDEGTDARDVLENKLLP-LRRGYIGVVNRSQKD 241
Query: 248 SDLANSDALKLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQ 307
D LA E HPSYRHLADR GTPYLQ+VLNQQLTNHIRDTLPGLR++LQ
Sbjct: 242 IDGKKDITAALAAERKFFLSHPSYRHLADRXGTPYLQKVLNQQLTNHIRDTLPGLRNKLQ 301
Query: 308 KQLLTLEKDVEQFKHFRPD 326
QLL++EK+VE++K+FRPD
Sbjct: 302 SQLLSIEKEVEEYKNFRPD 320
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 730 EEMLRMYHACKEALRIIGDVSMATV 754
+E LR YHA KEAL IIG+++ TV
Sbjct: 329 DEXLRXYHALKEALSIIGNINTTTV 353
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/304 (67%), Positives = 242/304 (79%), Gaps = 5/304 (1%)
Query: 7 LEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66
+E LIP+VN+LQDAF+ +G +DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT
Sbjct: 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
Query: 67 RRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVY 126
RRPLVLQL+NS TEYAEFLHCKGKKF DF+EVR EIEAETDR+TG+NKGIS VPINLRVY
Sbjct: 61 RRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVY 120
Query: 127 SPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD 186
SP+VLN+TL+DLPG+TKVPVGDQP DIE QI+DML QF+TKE CLILAV+PAN+DLA SD
Sbjct: 121 SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 180
Query: 187 ALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLILAVTPA 246
AL+IAK+VDP V +TK+ + D+ D +++ +L ++R ++ +
Sbjct: 181 ALKIAKEVDPQGQRTIGV----ITKLDLMDEGTDARDVLENKLLP-LRRGYIGVVNRSQK 235
Query: 247 NSDLANSDALKLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRL 306
+ D LA E HPSYRHLADR+GTPYLQ+VLNQQLTNHIRDTLPGLR++L
Sbjct: 236 DIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKL 295
Query: 307 QKQL 310
Q QL
Sbjct: 296 QSQL 299
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/309 (64%), Positives = 242/309 (78%), Gaps = 9/309 (2%)
Query: 6 GLEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65
G+E+LIP+VN+LQDAF+ LG ++LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV
Sbjct: 18 GMEELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 77
Query: 66 TRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRV 125
TRRPLVLQLI S EYAEFLHCKGKKF DFDEVR EIEAETDR+TG NKGIS++PINLRV
Sbjct: 78 TRRPLVLQLITSKAEYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKGISSIPINLRV 137
Query: 126 YSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS 185
YSP+VLN+TLIDLPG+TKVPVGDQP DIE QI++M+ QFIT+E CLILAVTPANTDLA S
Sbjct: 138 YSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPANTDLANS 197
Query: 186 DALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLILAVTP 245
DAL++AK+VDP L V +TK+ + D+ D +++ +L + + V
Sbjct: 198 DALKLAKEVDPQGLRTIGV----ITKLDLMDEGTDARDVLENKLLPLRR---GYVGVVNR 250
Query: 246 ANSDLANSDALKLAKEVDPPGL--HPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLR 303
+ D+ +K A + HP+YRH+ADR+GTP+LQ+VLNQQLTNHIRDTLP R
Sbjct: 251 SQKDIDGKKDIKAAMLAERKFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFR 310
Query: 304 DRLQKQLLT 312
++LQ QLL+
Sbjct: 311 NKLQGQLLS 319
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 290 bits (742), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 159/323 (49%), Positives = 214/323 (66%), Gaps = 18/323 (5%)
Query: 8 EQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 67
+QLIP++NKLQD F LG +DLPQI VVG QS+GKSSVLEN VGRDFLPRGSGIVTR
Sbjct: 1 DQLIPVINKLQDVFNTLGSD-PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTR 59
Query: 68 RPLVLQLIN--------SMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNV 119
RPL+LQL + E+ EFLH F DF E+R EI +TDR+TG NKGIS
Sbjct: 60 RPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQ 119
Query: 120 PINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPAN 179
PINL++YSP+V+N+TL+DLPG+TKVPVGDQP DIEQQI+ M+ +I K+ +I+AVTPAN
Sbjct: 120 PINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179
Query: 180 TDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCL 239
TDLA SDALQ+AK+VDP+ V +TK+ + D+ D ++ + + I
Sbjct: 180 TDLANSDALQLAKEVDPEGKRTIGV----ITKLDLMDKGTD---AMEVLTGRVIPLTLGF 232
Query: 240 ILAVTPANSDLANSDALK--LAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRD 297
I + + D+ +++ L E+ HP Y+ +A+R GT YL + LN+ L HIRD
Sbjct: 233 IGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRD 292
Query: 298 TLPGLRDRLQKQLLTLEKDVEQF 320
TLP L+ ++ K L ++ ++ +
Sbjct: 293 TLPDLKVKVSKMLSDVQGELSTY 315
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 254 bits (649), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 152/327 (46%), Positives = 213/327 (65%), Gaps = 20/327 (6%)
Query: 7 LEQLIPIVNKLQDAFTQLG-------VPMQMD-LPQIAVVGGQSAGKSSVLENFVGRDFL 58
+E LI +VNK+Q A T LG +P D LP IAVVGGQS+GKSSVLE+ VG+DFL
Sbjct: 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFL 60
Query: 59 PRGSGIVTRRPLVLQL--INSMT-EYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKG 115
PRGSGIVTRRPLVLQL I+ T EYAEFLH KKF DF VR+EI+ ETDR TG +K
Sbjct: 61 PRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKA 120
Query: 116 ISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAV 175
IS+VPI+L +YSPNV+N+TLIDLPGLTKV V Q I + I++M+ +I K C+ILA+
Sbjct: 121 ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180
Query: 176 TPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKR 235
+PAN DLATSDA++I+++VDP V +TK+ + D+ D ++ + + K
Sbjct: 181 SPANQDLATSDAIKISREVDPSGDRTFGV----LTKIDLMDKGTD---AVEILEGRSFKL 233
Query: 236 DNCLILAVTPANSDL-ANSDALKLAK-EVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTN 293
+ V + +D+ N D + K E + YRHLA+++G+ +L ++L++ L
Sbjct: 234 KYPWVGVVNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLER 293
Query: 294 HIRDTLPGLRDRLQKQLLTLEKDVEQF 320
I+ +PG++ + K +L LE ++ +
Sbjct: 294 VIKSRIPGIQSLINKTVLELETELSRL 320
>pdb|1DYN|A Chain A, Crystal Structure At 2.2 Angstroms Resolution Of The
Pleckstrin Homology Domain From Human Dynamin
pdb|1DYN|B Chain B, Crystal Structure At 2.2 Angstroms Resolution Of The
Pleckstrin Homology Domain From Human Dynamin
Length = 125
Score = 199 bits (505), Expect = 7e-51, Method: Composition-based stats.
Identities = 88/121 (72%), Positives = 107/121 (88%), Gaps = 4/121 (3%)
Query: 525 GNQ----VIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKL 580
GNQ VIRKGW+ I+N+GIMKGGS++YWFVLT+EN+SW+KD+EE+EKKYML +D LKL
Sbjct: 5 GNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKL 64
Query: 581 RDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYPEKSTD 640
RDVE+GFMS +H FALFN E RNVYKDY+QLEL+CE Q++VDSWKASFLRAGVYPE+ D
Sbjct: 65 RDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGD 124
Query: 641 Q 641
+
Sbjct: 125 K 125
>pdb|3ZYS|C Chain C, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|F Chain F, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 113
Score = 197 bits (502), Expect = 1e-50, Method: Composition-based stats.
Identities = 84/110 (76%), Positives = 102/110 (92%)
Query: 528 VIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGF 587
VIRKGW+ I+N+GIMKGGS++YWFVLT+EN+SW+KD+EE+EKKYML +D LKLRDVE+GF
Sbjct: 3 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGF 62
Query: 588 MSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYPEK 637
MS +H FALFN E RNVYKDY+QLEL+CE Q++VDSWKASFLRAGVYPE+
Sbjct: 63 MSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPER 112
>pdb|2DYN|A Chain A, Dynamin (Pleckstrin Homology Domain) (Dynph)
pdb|2DYN|B Chain B, Dynamin (Pleckstrin Homology Domain) (Dynph)
Length = 122
Score = 197 bits (501), Expect = 2e-50, Method: Composition-based stats.
Identities = 87/117 (74%), Positives = 105/117 (89%), Gaps = 4/117 (3%)
Query: 525 GNQ----VIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKL 580
GNQ VIRKGW+ I+N+GIMKGGS++YWFVLT+EN+SW+KD+EE+EKKYML +D LKL
Sbjct: 5 GNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKL 64
Query: 581 RDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYPEK 637
RDVE+GFMS +H FALFN E RNVYKDY+QLEL+CE Q++VDSWKASFLRAGVYPE+
Sbjct: 65 RDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPER 121
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 172 bits (435), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 140/465 (30%), Positives = 234/465 (50%), Gaps = 41/465 (8%)
Query: 8 EQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 67
E++ P ++ L D+ LGV + LP IAV+G QS+GKSSVLE G LPRGSGIVTR
Sbjct: 47 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 104
Query: 68 RPLVLQLINSMTEYAEFLHCKGK--------KFVDFDEVRREIEAETDRITGSNKGISNV 119
PLVL+L + E +GK + D EV +EI + I G GIS+
Sbjct: 105 CPLVLKLKKLVNEDK----WRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHE 160
Query: 120 PINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPAN 179
I L + S +V ++TLIDLPG+T+V VG+QP DI +IK ++ ++I ++ + L V P+N
Sbjct: 161 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSN 220
Query: 180 TDLATSDALQIAKQVDPDV-LNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNC 238
D+AT++AL +A++VDP+ + ++ P + D+ D+ +++++ K
Sbjct: 221 VDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDV---VRNLVFHLKKG--- 274
Query: 239 LILAVTPANSDLANSDALKLAKEVDPPGL----HPSYRHLAD--RLGTPYLQRVLNQQLT 292
+ D L L++ + + HP +R L + + P L L +L
Sbjct: 275 --YMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELI 332
Query: 293 NHIRDTLPGLRDRLQKQLLTLEKDVEQFKHFRPDDPSIKTKAMLQMIQQLQSDFERTIEG 352
HI +LP L +++++ + ++++++ P+D + K ++ + D ++G
Sbjct: 333 THICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQG 392
Query: 353 SGSAQINTMELSGGAKINRLFHERFPFE-IVKMEFDE--KELRREIAFAIRNIHGIRVGL 409
+ + L RL HE + I++ F E K L R+I G +
Sbjct: 393 EETVGEEDIRL-----FTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELPG 447
Query: 410 FTPDMAFEAIVKKQISRLKEPALKCVDLVVAELSNVVRICTDKMS 454
F FE IVK+QI L+EPA+ + V +++VR+ +S
Sbjct: 448 FVNYRTFETIVKQQIKALEEPAVDMLHTV----TDMVRLAFTDVS 488
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 143/483 (29%), Positives = 238/483 (49%), Gaps = 52/483 (10%)
Query: 1 MAGNPGL-----------EQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVL 49
M G+PG E++ P ++ L D+ LGV + LP IAV+G QS+GKSSVL
Sbjct: 4 MGGSPGSVAENNLCSQYEEKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVL 62
Query: 50 ENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGK--------KFVDFDEVRRE 101
E G LPRGSGIVTR PLVL+L + E +GK + D EV +E
Sbjct: 63 EALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDK----WRGKVSYQDYEIEISDASEVEKE 117
Query: 102 IEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDML 161
I + I G GIS+ I L + S +V ++TLIDLPG+T+V VG+QP DI +IK ++
Sbjct: 118 INKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLI 177
Query: 162 FQFITKETCLILAVTPANTDLATSDALQIAKQVDPDV-LNLTLVDLPGMTKVPIGDQPAD 220
++I ++ + L V P+N D+AT++AL +A++VDP+ + ++ P + D+ D
Sbjct: 178 KKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237
Query: 221 IEYQIKSMILQFIKRDNCLILAVTPANSDLANSDALKLAKEVDPPGL----HPSYRHLAD 276
+ +++++ K + D L L++ + + HP +R L +
Sbjct: 238 V---VRNLVFHLKKG-----YMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLE 289
Query: 277 --RLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQKQLLTLEKDVEQFKHFRPDDPSIKTKA 334
+ P L L +L HI +LP L +++++ + ++++++ P+D + K
Sbjct: 290 EGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFF 349
Query: 335 MLQMIQQLQSDFERTIEGSGSAQINTMELSGGAKINRLFHERFPFE-IVKMEFDE--KEL 391
++ + D ++G + + L RL HE + I++ F E K L
Sbjct: 350 LIDKVNAFNQDITALMQGEETVGEEDIRL-----FTRLRHEFHKWSTIIENNFQEGHKIL 404
Query: 392 RREIAFAIRNIHGIRVGLFTPDMAFEAIVKKQISRLKEPALKCVDLVVAELSNVVRICTD 451
R+I + F FE IVK+QI L+EPA+ + V +++VR+
Sbjct: 405 SRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTV----TDMVRLAFT 460
Query: 452 KMS 454
+S
Sbjct: 461 DVS 463
>pdb|2YS1|A Chain A, Solution Structure Of The Ph Domain Of Dynamin-2 From
Human
Length = 113
Score = 166 bits (419), Expect = 7e-41, Method: Composition-based stats.
Identities = 76/106 (71%), Positives = 98/106 (92%)
Query: 528 VIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGF 587
VIR+GW+ I+N+ +MKGGS++YWFVLT+E++SW+KDEEE+EKKYMLPLD LK+RDVE+GF
Sbjct: 8 VIRRGWLTINNISLMKGGSKEYWFVLTAESLSWYKDEEEKEKKYMLPLDNLKIRDVEKGF 67
Query: 588 MSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGV 633
MS +H FA+FN E RNVYKD +Q+EL+C++Q+DVDSWKASFLRAGV
Sbjct: 68 MSNKHVFAIFNTEQRNVYKDLRQIELACDSQEDVDSWKASFLRAGV 113
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain
Unliganded
Length = 138
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 21/123 (17%)
Query: 530 RKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMS 589
R+GW+ G +K R WF+LT + +F+ ++E + ++PL+ L +R+VE
Sbjct: 17 REGWLLKLGGGRVKTWKRR-WFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDP--R 73
Query: 590 RRHTFALFNP--------------EGRNVYKDYKQLELSCENQDDVDSW----KASFLRA 631
+ + F L+NP +GR V ++ +S + ++ + W KAS R
Sbjct: 74 KPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD 133
Query: 632 GVY 634
Y
Sbjct: 134 PFY 136
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 530 RKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMS 589
R+GW+ LG + WF+LT + +F+ ++E + ++PL+ L +R+VE
Sbjct: 5 REGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDP--R 60
Query: 590 RRHTFALFNP--------------EGRNVYKDYKQLELSCENQDDVDSW----KASFLRA 631
+ + F L+NP +GR V ++ +S + ++ + W KAS R
Sbjct: 61 KPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSIKASISRD 120
Query: 632 GVYPEKST 639
Y +T
Sbjct: 121 PFYDXLAT 128
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 22/123 (17%)
Query: 530 RKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMS 589
R+GW+ LG + WF+LT + +F+ ++E + ++PL+ L +R+VE
Sbjct: 215 REGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDP--R 270
Query: 590 RRHTFALFNP--------------EGRNVYKDYKQLELSCENQDDVDSW----KASFLRA 631
+ + F L+NP +GR V ++ +S + ++ + W KAS R
Sbjct: 271 KPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD 330
Query: 632 GVY 634
Y
Sbjct: 331 PFY 333
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 530 RKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMS 589
R+GW+ LG + WF+LT + +F+ ++E + ++PL+ L +R+VE
Sbjct: 215 REGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVED--PR 270
Query: 590 RRHTFALFNP--------------EGRNVYKDYKQLELSCENQDDVDSW----KASFLRA 631
+ + F L+NP +GR V ++ +S + ++ + W KAS R
Sbjct: 271 KPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSIKASISRD 330
Query: 632 GVYPEKST 639
Y +T
Sbjct: 331 PFYDXLAT 338
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 530 RKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMS 589
R+GW+ G +K R WF+LT + +F+ ++E + ++PL+ L +R+V+
Sbjct: 13 REGWLLKLGGGRVKTWKRR-WFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVDD--PR 69
Query: 590 RRHTFALFNP--------------EGRNVYKDYKQLELSCENQDDVDSWKASFLRA 631
+ + F L+ P +GR V ++ +S Q++ D W S A
Sbjct: 70 KPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSIQAA 125
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 22/123 (17%)
Query: 530 RKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMS 589
R+GW+ LG + WF+LT + +F+ ++E + ++PL+ L +R+VE
Sbjct: 5 REGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDP--R 60
Query: 590 RRHTFALFNP--------------EGRNVYKDYKQLELSCENQDDVDSW----KASFLRA 631
+ + F L+NP +GR V ++ +S + ++ + W KAS R
Sbjct: 61 KPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD 120
Query: 632 GVY 634
Y
Sbjct: 121 PFY 123
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 22/123 (17%)
Query: 530 RKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMS 589
R+GW+ LG + WF+LT + +F+ ++E + ++PL+ L +R+V
Sbjct: 7 REGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDP--R 62
Query: 590 RRHTFALFNP--------------EGRNVYKDYKQLELSCENQDDVDSW----KASFLRA 631
+ + F L+NP +GR V ++ +S + ++ + W KAS R
Sbjct: 63 KPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSIKASISRD 122
Query: 632 GVY 634
Y
Sbjct: 123 PFY 125
>pdb|4BBK|A Chain A, Structural And Functional Characterisation Of The
Kindlin-1 Pleckstrin Homology Domain
Length = 165
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 541 IMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVE----QGFMSRRHTFAL 596
+M + YWFV +I++FK++E + + P++ L LR E R+ L
Sbjct: 40 LMLKACKQYWFVFKDTSIAYFKNKELEQGE---PIEKLNLRGCEIVPDVNVSGRKFGIKL 96
Query: 597 FNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYPEKSTDQSNGDEGGTEGTSSMD 656
P + + Y L C+++D W A+ + A +G T SS
Sbjct: 97 LIPVADGMNEVY----LRCDHEDQYARWMAACILAS-------------KGKTMADSSYQ 139
Query: 657 PQL 659
P++
Sbjct: 140 PEV 142
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 517 SNKAGRKLGNQVIRKGWMCIH-NLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPL 575
S+ R V + GW+ + G+ + R WFVL + ++KDE+E +PL
Sbjct: 11 SHSMKRNPNAPVTKAGWLFKQASSGVKQWNKR--WFVLVDRCLFYYKDEKEESILGSIPL 68
Query: 576 DGLKLRDVE-QGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
++ V+ +SR+HTF + R + S E+ ++ ++W
Sbjct: 69 LSFRVAAVQPSDNISRKHTFKAEHAGVRTYF-------FSAESPEEQEAW 111
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 528 VIRKGWMCIH-NLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVE-Q 585
V + GW+ + G+ + R WFVL + ++KDE+E +PL ++ V+
Sbjct: 11 VTKAGWLFKQASSGVKQWNKR--WFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPS 68
Query: 586 GFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
+SR+HTF + R + S E+ ++ ++W
Sbjct: 69 DNISRKHTFKAEHAGVRTYF-------FSAESPEEQEAW 100
>pdb|2D9V|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family B Member 1 From Mouse
Length = 130
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 528 VIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGF 587
++R GW+ + I++ R+++ + + ++ DE ++++ + + +RD++ G
Sbjct: 8 LVRGGWLWRQS-SILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIH-FNVRDIKVG- 64
Query: 588 MSRRHTFALFNPEGRNV-------YKDYKQLELSCENQDDVDSWKASFLRAGVYP 635
+ + PEGR+ ++ +L L E +DD +WK + + A P
Sbjct: 65 ---QECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTP 116
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
Length = 769
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 254 DALKLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRD 297
D +K + VDP Y HLA+RLGTP L ++L N +++
Sbjct: 563 DLVKTMRRVDP-----VYIHLAERLGTPELSTAERKELENKLKE 601
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 528 VIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGL-KLRDVEQG 586
VI+ G+ C+ +MK R Y F L I +FK E E+E ++PL + K+++ +Q
Sbjct: 14 VIKAGY-CVKQGAVMKNWKRRY-FQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQS 71
Query: 587 -FMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
M R + F + R Y + ++ +++ SW
Sbjct: 72 DIMMRDNLFEIVT-TSRTFY-------VQADSPEEMHSW 102
>pdb|3AJ4|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Complexed With O-Phospho-L-Serine
pdb|3AJ4|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Complexed With O-Phospho-L-Serine
pdb|3VIA|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
pdb|3VIA|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Length = 112
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 19/107 (17%)
Query: 529 IRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEER---EKKYMLPLDGLKLRDVEQ 585
++ GW+ + I+K ++ WF L S+ + D++ R E K +P+D + +R ++
Sbjct: 6 VKSGWL-LRQSTILKRWKKN-WFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQE 63
Query: 586 GFMSRRHTFALFNPEGRN-------VYKDYKQLELSCENQDDVDSWK 625
R T P+G++ V +D K + L E+ DD +WK
Sbjct: 64 C----RDTQP---PDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWK 103
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINS--MTEYAEFLHCKG 89
LP+IA+ G + GKSS + + + R L R S +P Q +N + + F+ G
Sbjct: 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSS----KPGKTQTLNFYIINDELHFVDVPG 78
Query: 90 KKFVDFDEVRRE 101
F + RE
Sbjct: 79 YGFAKVSKSERE 90
>pdb|2DHI|A Chain A, Solution Structure Of The Ph Domain Of Evectin-2 From
Mouse
Length = 120
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 529 IRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEER---EKKYMLPLDGLKLRDVEQ 585
++ GW+ + I+K ++ WF L S+ + D++ R E K +P+D + +R
Sbjct: 9 VKSGWL-LRQSTILKRWKKN-WFDLWSDGHLIYYDDQTRQSIEDKVHMPVDCINIR---T 63
Query: 586 GFMSRRHTFALFNPEGRN-------VYKDYKQLELSCENQDDVDSWK 625
G R + P+G+ V +D K + L E+ DD +WK
Sbjct: 64 GHECRD----IQPPDGKPRDCLLQIVCRDGKTISLCAESTDDCLAWK 106
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 528 VIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEERE--KKYMLPLDGLKLRDVEQ 585
V+R+GW+ + MK + WFVL+ + +++DE+E +LP + L E
Sbjct: 21 VVRRGWLYKQDSTGMKLWKKR-WFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSED 79
Query: 586 GFMSRRHTFALFNPEGRNVY 605
++R++ F +P R Y
Sbjct: 80 -HINRKYAFKAAHPNMRTYY 98
>pdb|3D68|A Chain A, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
pdb|3D68|B Chain B, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
pdb|3D68|C Chain C, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
Length = 424
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 657 PQLERQVETIRNLVDSYMKIVTK-TCRDLVPKTIMLLIINNAKDFINGELLAHLYASGDQ 715
P+ RQV+ ++NL +Y ++ + DL+ K + NA D N + AHL SG
Sbjct: 34 PRTSRQVQVLQNLTTTYEIVLWQPVTADLIVKKKQVHFFVNASDVDN--VKAHLNVSGIP 91
Query: 716 AAMMEESPEEALKRE 730
+++ E+ ++++
Sbjct: 92 CSVLLADVEDLIQQQ 106
>pdb|3D66|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D66|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D66|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D67|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
pdb|3D67|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
pdb|3D67|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
Length = 424
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 657 PQLERQVETIRNLVDSYMKIVTK-TCRDLVPKTIMLLIINNAKDFINGELLAHLYASGDQ 715
P+ RQV+ ++NL +Y ++ + DL+ K + NA D N + AHL SG
Sbjct: 34 PRTSRQVQVLQNLTTTYEIVLWQPVTADLIVKKKQVHFFVNASDVDN--VKAHLNVSGIP 91
Query: 716 AAMMEESPEEALKRE 730
+++ E+ ++++
Sbjct: 92 CSVLLADVEDLIQQQ 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,437,445
Number of Sequences: 62578
Number of extensions: 941888
Number of successful extensions: 2402
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2339
Number of HSP's gapped (non-prelim): 55
length of query: 775
length of database: 14,973,337
effective HSP length: 106
effective length of query: 669
effective length of database: 8,340,069
effective search space: 5579506161
effective search space used: 5579506161
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)