Query psy3395
Match_columns 775
No_of_seqs 305 out of 1822
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 23:54:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446|consensus 100.0 1E-118 2E-123 1038.9 49.3 646 4-752 1-656 (657)
2 PF01031 Dynamin_M: Dynamin ce 100.0 8.6E-56 1.9E-60 476.8 21.5 283 222-507 2-287 (295)
3 smart00053 DYNc Dynamin, GTPas 100.0 1.5E-52 3.3E-57 434.6 24.4 239 7-252 1-239 (240)
4 KOG0447|consensus 100.0 2.4E-34 5.2E-39 311.7 30.1 284 8-301 282-582 (980)
5 smart00302 GED Dynamin GTPase 99.9 8E-28 1.7E-32 214.0 12.3 90 660-749 3-92 (92)
6 cd01256 PH_dynamin Dynamin ple 99.9 3.9E-26 8.5E-31 197.5 1.9 110 528-637 1-110 (110)
7 PF02212 GED: Dynamin GTPase e 99.9 1.9E-22 4E-27 180.0 11.4 92 658-749 1-92 (92)
8 PF00350 Dynamin_N: Dynamin fa 99.9 9.6E-21 2.1E-25 186.5 15.2 164 35-212 1-168 (168)
9 COG0699 Predicted GTPases (dyn 99.7 1.9E-15 4.1E-20 176.0 26.4 537 80-744 2-542 (546)
10 COG0218 Predicted GTPase [Gene 99.3 2.8E-11 6.2E-16 120.9 10.8 127 30-219 22-152 (200)
11 PRK09866 hypothetical protein; 99.2 9.3E-10 2E-14 126.3 18.9 68 7-78 48-115 (741)
12 TIGR03598 GTPase_YsxC ribosome 98.8 2.8E-08 6E-13 99.3 12.2 125 30-217 16-144 (179)
13 PRK00454 engB GTP-binding prot 98.8 3.1E-08 6.7E-13 99.8 12.3 126 30-218 22-151 (196)
14 COG1159 Era GTPase [General fu 98.8 1.1E-07 2.3E-12 100.5 14.6 121 35-220 9-132 (298)
15 PRK00089 era GTPase Era; Revie 98.8 2.5E-07 5.4E-12 99.9 18.0 119 34-217 7-128 (292)
16 cd01852 AIG1 AIG1 (avrRpt2-ind 98.8 8.5E-08 1.8E-12 97.4 13.3 153 34-247 2-164 (196)
17 PF01926 MMR_HSR1: 50S ribosom 98.8 7.8E-08 1.7E-12 89.0 11.9 114 34-211 1-116 (116)
18 TIGR00436 era GTP-binding prot 98.8 3.3E-07 7.2E-12 98.0 18.1 119 34-217 2-122 (270)
19 COG0486 ThdF Predicted GTPase 98.8 7.6E-07 1.7E-11 99.3 21.3 171 8-250 192-364 (454)
20 TIGR03156 GTP_HflX GTP-binding 98.7 1.1E-07 2.3E-12 105.4 14.2 126 30-216 187-315 (351)
21 cd01853 Toc34_like Toc34-like 98.7 7.5E-08 1.6E-12 101.6 12.2 131 28-217 27-164 (249)
22 TIGR00991 3a0901s02IAP34 GTP-b 98.7 2.8E-07 6E-12 99.2 15.0 140 8-217 22-168 (313)
23 cd01876 YihA_EngB The YihA (En 98.7 7.3E-08 1.6E-12 93.2 9.5 122 34-218 1-126 (170)
24 PF02421 FeoB_N: Ferrous iron 98.6 1E-07 2.2E-12 93.3 9.3 116 34-216 2-119 (156)
25 PF04548 AIG1: AIG1 family; I 98.6 1.1E-07 2.3E-12 98.1 9.6 151 34-245 2-163 (212)
26 PRK11058 GTPase HflX; Provisio 98.6 3.8E-07 8.3E-12 103.5 14.3 126 30-216 195-323 (426)
27 cd01878 HflX HflX subfamily. 98.6 4.7E-07 1E-11 92.2 13.5 127 30-217 39-168 (204)
28 cd04163 Era Era subfamily. Er 98.6 4.7E-07 1E-11 87.2 12.4 120 33-217 4-126 (168)
29 TIGR00450 mnmE_trmE_thdF tRNA 98.6 3.4E-06 7.3E-11 96.3 21.2 144 10-217 181-325 (442)
30 cd01887 IF2_eIF5B IF2/eIF5B (i 98.6 3.9E-07 8.4E-12 89.0 11.0 116 33-217 1-117 (168)
31 COG1084 Predicted GTPase [Gene 98.5 1.8E-06 3.9E-11 92.2 13.9 144 13-218 150-296 (346)
32 cd00880 Era_like Era (E. coli 98.5 2.2E-06 4.8E-11 81.3 13.0 76 130-217 44-119 (163)
33 PRK04213 GTP-binding protein; 98.5 1.4E-06 3E-11 88.5 12.3 28 30-57 7-34 (201)
34 cd01895 EngA2 EngA2 subfamily. 98.4 4.6E-06 1E-10 81.2 14.8 126 32-217 2-128 (174)
35 cd01897 NOG NOG1 is a nucleola 98.4 2.3E-06 4.9E-11 83.7 12.2 25 33-57 1-25 (168)
36 cd04104 p47_IIGP_like p47 (47- 98.4 1.5E-06 3.1E-11 88.6 11.0 25 33-57 2-26 (197)
37 COG3596 Predicted GTPase [Gene 98.4 1.4E-06 3E-11 91.1 10.5 123 32-219 38-165 (296)
38 cd01898 Obg Obg subfamily. Th 98.4 2.2E-06 4.7E-11 84.0 11.4 24 34-57 2-25 (170)
39 cd04165 GTPBP1_like GTPBP1-lik 98.4 3.3E-06 7.1E-11 87.9 12.6 74 125-217 78-153 (224)
40 COG1160 Predicted GTPases [Gen 98.4 2.7E-06 5.8E-11 94.8 12.4 117 33-215 4-125 (444)
41 PRK05291 trmE tRNA modificatio 98.4 3.4E-05 7.4E-10 88.5 21.8 121 31-217 214-336 (449)
42 PRK12298 obgE GTPase CgtA; Rev 98.4 2.7E-06 5.9E-11 95.5 12.2 122 32-217 159-290 (390)
43 PRK15494 era GTPase Era; Provi 98.3 1.5E-05 3.2E-10 88.2 17.7 24 34-57 54-77 (339)
44 PRK12299 obgE GTPase CgtA; Rev 98.3 8E-06 1.7E-10 90.0 14.9 123 31-217 157-286 (335)
45 cd01861 Rab6 Rab6 subfamily. 98.3 6.5E-06 1.4E-10 79.8 12.7 116 34-216 2-119 (161)
46 cd01850 CDC_Septin CDC/Septin. 98.3 6.6E-06 1.4E-10 88.3 13.3 136 34-217 6-158 (276)
47 PRK03003 GTP-binding protein D 98.3 7.8E-06 1.7E-10 94.4 14.8 122 30-216 36-160 (472)
48 cd04164 trmE TrmE (MnmE, ThdF, 98.3 8E-06 1.7E-10 78.3 12.5 119 34-217 3-122 (157)
49 cd00154 Rab Rab family. Rab G 98.3 1E-05 2.3E-10 77.1 13.1 115 33-215 1-118 (159)
50 PRK00093 GTP-binding protein D 98.3 8.5E-06 1.8E-10 93.0 14.3 120 32-216 1-123 (435)
51 cd01894 EngA1 EngA1 subfamily. 98.3 4.8E-06 1E-10 79.9 10.4 74 131-217 45-120 (157)
52 cd01868 Rab11_like Rab11-like. 98.3 9.8E-06 2.1E-10 79.1 12.7 117 33-216 4-122 (165)
53 cd01867 Rab8_Rab10_Rab13_like 98.3 7.3E-06 1.6E-10 80.5 11.7 118 32-217 3-123 (167)
54 cd01866 Rab2 Rab2 subfamily. 98.2 1.4E-05 3E-10 78.7 13.2 116 33-216 5-123 (168)
55 TIGR00993 3a0901s04IAP86 chlor 98.2 1.2E-05 2.5E-10 93.6 13.8 137 20-216 106-250 (763)
56 cd04171 SelB SelB subfamily. 98.2 9.4E-06 2E-10 78.6 11.2 67 131-217 51-119 (164)
57 TIGR03594 GTPase_EngA ribosome 98.2 1.5E-05 3.3E-10 90.7 14.7 125 31-215 171-296 (429)
58 TIGR03594 GTPase_EngA ribosome 98.2 1.2E-05 2.5E-10 91.7 13.6 120 34-218 1-123 (429)
59 TIGR02729 Obg_CgtA Obg family 98.2 1.3E-05 2.8E-10 88.2 12.8 26 31-56 156-181 (329)
60 PRK12297 obgE GTPase CgtA; Rev 98.2 2.5E-05 5.4E-10 88.5 15.4 25 32-56 158-182 (424)
61 cd00881 GTP_translation_factor 98.2 7.1E-06 1.5E-10 81.5 9.6 126 34-216 1-128 (189)
62 PRK09518 bifunctional cytidyla 98.1 1.4E-05 3.1E-10 96.7 13.0 123 31-216 274-397 (712)
63 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.1 3E-05 6.5E-10 75.8 13.0 117 33-216 3-121 (166)
64 cd04157 Arl6 Arl6 subfamily. 98.1 1.4E-05 3E-10 77.5 10.5 70 131-217 45-119 (162)
65 cd01879 FeoB Ferrous iron tran 98.1 1.4E-05 2.9E-10 77.1 10.4 72 131-217 43-116 (158)
66 cd04159 Arl10_like Arl10-like 98.1 1.4E-05 2.9E-10 76.5 10.0 24 34-57 1-24 (159)
67 cd01862 Rab7 Rab7 subfamily. 98.1 2.6E-05 5.5E-10 76.4 12.2 24 34-57 2-25 (172)
68 cd01864 Rab19 Rab19 subfamily. 98.1 2.1E-05 4.5E-10 77.0 11.4 119 32-217 3-123 (165)
69 cd01865 Rab3 Rab3 subfamily. 98.1 2.9E-05 6.3E-10 76.1 12.4 116 34-217 3-121 (165)
70 cd04122 Rab14 Rab14 subfamily. 98.1 3.7E-05 8E-10 75.4 13.0 117 34-217 4-122 (166)
71 PF05049 IIGP: Interferon-indu 98.1 8.6E-06 1.9E-10 90.1 9.2 132 10-214 17-153 (376)
72 cd01890 LepA LepA subfamily. 98.1 1.1E-05 2.5E-10 79.7 9.4 68 130-216 66-133 (179)
73 cd04114 Rab30 Rab30 subfamily. 98.1 1.9E-05 4.1E-10 77.3 10.8 118 31-216 6-126 (169)
74 PRK12296 obgE GTPase CgtA; Rev 98.1 2.6E-05 5.7E-10 89.6 13.3 26 31-56 158-183 (500)
75 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.1 1.7E-05 3.7E-10 79.5 10.4 24 34-57 5-28 (183)
76 PRK00093 GTP-binding protein D 98.1 2.1E-05 4.5E-10 89.9 12.2 127 31-217 172-299 (435)
77 cd04113 Rab4 Rab4 subfamily. 98.1 3.3E-05 7.1E-10 75.1 11.5 116 34-217 2-120 (161)
78 cd01860 Rab5_related Rab5-rela 98.1 5.6E-05 1.2E-09 73.4 13.1 26 34-59 3-28 (163)
79 cd04145 M_R_Ras_like M-Ras/R-R 98.1 4.5E-05 9.7E-10 74.0 12.4 69 131-217 50-122 (164)
80 cd01891 TypA_BipA TypA (tyrosi 98.1 2.2E-05 4.8E-10 79.4 10.6 67 130-217 64-132 (194)
81 cd04119 RJL RJL (RabJ-Like) su 98.1 5.9E-05 1.3E-09 73.2 13.1 116 34-216 2-124 (168)
82 cd04101 RabL4 RabL4 (Rab-like4 98.1 6.7E-05 1.5E-09 73.0 13.5 69 131-217 52-122 (164)
83 PRK03003 GTP-binding protein D 98.0 2.8E-05 6.1E-10 89.8 12.4 125 31-216 210-336 (472)
84 cd04123 Rab21 Rab21 subfamily. 98.0 6.1E-05 1.3E-09 72.6 12.9 115 34-216 2-119 (162)
85 smart00175 RAB Rab subfamily o 98.0 6.2E-05 1.3E-09 73.0 12.9 115 34-216 2-119 (164)
86 cd00878 Arf_Arl Arf (ADP-ribos 98.0 2.4E-05 5.3E-10 75.7 9.8 70 131-217 43-115 (158)
87 cd04106 Rab23_lke Rab23-like s 98.0 4.9E-05 1.1E-09 73.7 11.9 68 131-217 51-121 (162)
88 KOG0448|consensus 98.0 0.00026 5.6E-09 82.0 19.3 167 34-226 111-285 (749)
89 cd04160 Arfrp1 Arfrp1 subfamil 98.0 3E-05 6.4E-10 75.8 10.2 70 130-217 49-122 (167)
90 cd00879 Sar1 Sar1 subfamily. 98.0 7.8E-05 1.7E-09 74.8 13.5 121 22-216 11-134 (190)
91 cd01893 Miro1 Miro1 subfamily. 98.0 2.7E-05 5.9E-10 76.4 10.0 113 34-217 2-118 (166)
92 cd04139 RalA_RalB RalA/RalB su 98.0 6E-05 1.3E-09 72.9 12.1 115 34-216 2-119 (164)
93 cd04112 Rab26 Rab26 subfamily. 98.0 5.5E-05 1.2E-09 76.3 12.1 68 132-216 51-120 (191)
94 COG1160 Predicted GTPases [Gen 98.0 5.7E-05 1.2E-09 84.4 13.0 127 31-218 177-305 (444)
95 cd00876 Ras Ras family. The R 98.0 8.4E-05 1.8E-09 71.5 12.9 115 34-216 1-118 (160)
96 TIGR00491 aIF-2 translation in 98.0 3.3E-05 7.2E-10 90.9 11.8 132 30-216 2-135 (590)
97 cd04142 RRP22 RRP22 subfamily. 98.0 8.1E-05 1.8E-09 75.9 12.9 24 34-57 2-25 (198)
98 cd04154 Arl2 Arl2 subfamily. 98.0 4.3E-05 9.4E-10 75.5 10.5 116 30-217 12-130 (173)
99 cd04138 H_N_K_Ras_like H-Ras/N 98.0 6.6E-05 1.4E-09 72.4 11.6 116 33-216 2-120 (162)
100 smart00178 SAR Sar1p-like memb 98.0 5.4E-05 1.2E-09 76.0 11.3 112 33-216 18-132 (184)
101 cd04156 ARLTS1 ARLTS1 subfamil 98.0 4.5E-05 9.7E-10 73.9 10.3 24 34-57 1-24 (160)
102 cd01881 Obg_like The Obg-like 98.0 2.1E-05 4.6E-10 77.2 8.1 21 37-57 1-21 (176)
103 smart00173 RAS Ras subfamily o 98.0 9.5E-05 2.1E-09 71.9 12.6 24 34-57 2-25 (164)
104 PRK09518 bifunctional cytidyla 98.0 4.7E-05 1E-09 92.2 12.6 126 31-217 449-576 (712)
105 PRK09554 feoB ferrous iron tra 97.9 3.9E-05 8.5E-10 93.1 11.5 121 33-217 4-127 (772)
106 cd01863 Rab18 Rab18 subfamily. 97.9 7.8E-05 1.7E-09 72.3 11.5 24 34-57 2-25 (161)
107 cd04151 Arl1 Arl1 subfamily. 97.9 6.8E-05 1.5E-09 72.8 10.1 69 131-216 43-114 (158)
108 cd04170 EF-G_bact Elongation f 97.9 0.00015 3.3E-09 77.4 13.3 128 35-217 2-131 (268)
109 cd04110 Rab35 Rab35 subfamily. 97.9 9.8E-05 2.1E-09 75.1 11.3 26 32-57 6-31 (199)
110 cd04155 Arl3 Arl3 subfamily. 97.9 0.00011 2.5E-09 72.1 11.4 26 32-57 14-39 (173)
111 PF00009 GTP_EFTU: Elongation 97.9 3.5E-05 7.7E-10 77.6 7.8 68 127-215 66-135 (188)
112 cd04136 Rap_like Rap-like subf 97.9 0.00018 3.8E-09 69.8 12.5 25 33-57 2-26 (163)
113 cd04161 Arl2l1_Arl13_like Arl2 97.9 9.4E-05 2E-09 73.0 10.6 69 131-217 43-115 (167)
114 TIGR02528 EutP ethanolamine ut 97.9 9E-05 2E-09 70.5 10.2 24 34-57 2-25 (142)
115 cd04168 TetM_like Tet(M)-like 97.9 0.00015 3.3E-09 76.1 12.6 127 35-216 2-130 (237)
116 cd01886 EF-G Elongation factor 97.9 0.00011 2.4E-09 78.6 11.8 66 130-216 63-130 (270)
117 KOG1423|consensus 97.8 5.9E-05 1.3E-09 79.8 9.2 127 34-219 74-202 (379)
118 PF00735 Septin: Septin; Inte 97.8 4.4E-05 9.5E-10 82.2 8.6 138 34-217 6-157 (281)
119 cd01896 DRG The developmentall 97.8 0.00031 6.7E-09 73.6 14.7 23 34-56 2-24 (233)
120 cd04175 Rap1 Rap1 subgroup. T 97.8 0.00021 4.5E-09 69.7 12.5 115 34-216 3-120 (164)
121 cd04169 RF3 RF3 subfamily. Pe 97.8 0.00024 5.3E-09 75.9 13.9 133 34-217 4-138 (267)
122 cd00882 Ras_like_GTPase Ras-li 97.8 0.00013 2.8E-09 68.0 10.4 71 130-218 44-118 (157)
123 cd04166 CysN_ATPS CysN_ATPS su 97.8 0.00018 3.9E-09 73.9 12.1 82 115-217 62-145 (208)
124 cd04124 RabL2 RabL2 subfamily. 97.8 0.00013 2.8E-09 71.3 10.5 114 34-215 2-117 (161)
125 cd04116 Rab9 Rab9 subfamily. 97.8 0.00015 3.2E-09 71.2 10.9 26 32-57 5-30 (170)
126 cd01888 eIF2_gamma eIF2-gamma 97.8 0.00015 3.2E-09 74.2 11.1 30 34-64 2-31 (203)
127 cd04125 RabA_like RabA-like su 97.8 0.00021 4.5E-09 71.7 11.9 117 33-216 1-119 (188)
128 cd04158 ARD1 ARD1 subfamily. 97.8 0.0001 2.2E-09 72.7 9.5 24 34-57 1-24 (169)
129 cd04111 Rab39 Rab39 subfamily. 97.8 0.00017 3.8E-09 74.2 11.4 25 33-57 3-27 (211)
130 cd04162 Arl9_Arfrp2_like Arl9/ 97.8 0.00016 3.5E-09 71.1 10.7 111 34-217 1-114 (164)
131 cd04120 Rab12 Rab12 subfamily. 97.8 0.00011 2.5E-09 75.2 9.7 116 34-216 2-119 (202)
132 cd01889 SelB_euk SelB subfamil 97.8 0.00014 3.1E-09 73.3 10.4 22 34-55 2-23 (192)
133 PLN03108 Rab family protein; P 97.8 0.00022 4.8E-09 73.3 11.9 27 33-59 7-33 (210)
134 CHL00189 infB translation init 97.8 0.00014 3E-09 87.4 11.7 118 30-216 242-361 (742)
135 PRK15467 ethanolamine utilizat 97.8 0.00043 9.4E-09 67.9 13.2 22 34-55 3-24 (158)
136 cd04140 ARHI_like ARHI subfami 97.7 0.00027 5.9E-09 69.2 11.6 24 34-57 3-26 (165)
137 cd04127 Rab27A Rab27a subfamil 97.7 0.00034 7.4E-09 69.3 12.5 26 33-58 5-30 (180)
138 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.7 0.00023 4.9E-09 70.7 11.1 115 34-216 4-121 (172)
139 cd04115 Rab33B_Rab33A Rab33B/R 97.7 0.00032 7E-09 69.1 12.2 118 33-216 3-123 (170)
140 cd01858 NGP_1 NGP-1. Autoanti 97.7 8.4E-05 1.8E-09 72.7 7.8 28 34-61 104-131 (157)
141 cd04109 Rab28 Rab28 subfamily. 97.7 0.00025 5.3E-09 73.1 11.6 24 34-57 2-25 (215)
142 cd04176 Rap2 Rap2 subgroup. T 97.7 0.00019 4.1E-09 69.9 10.2 115 34-216 3-120 (163)
143 cd04108 Rab36_Rab34 Rab34/Rab3 97.7 0.00015 3.3E-09 71.8 9.7 116 34-216 2-120 (170)
144 cd04167 Snu114p Snu114p subfam 97.7 0.00022 4.7E-09 73.5 11.0 133 34-215 2-136 (213)
145 cd01849 YlqF_related_GTPase Yl 97.7 0.00016 3.5E-09 70.6 9.6 40 30-69 98-138 (155)
146 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.7 0.00028 6.1E-09 70.0 11.3 25 33-57 16-40 (174)
147 cd04118 Rab24 Rab24 subfamily. 97.7 0.00022 4.7E-09 71.8 10.6 24 34-57 2-25 (193)
148 cd04149 Arf6 Arf6 subfamily. 97.7 0.00017 3.6E-09 71.4 9.6 68 131-216 53-124 (168)
149 TIGR00231 small_GTP small GTP- 97.7 0.00033 7E-09 66.3 10.9 29 33-62 2-30 (161)
150 COG1100 GTPase SAR1 and relate 97.7 0.00039 8.4E-09 71.3 12.2 118 34-220 7-129 (219)
151 PLN03110 Rab GTPase; Provision 97.7 0.00027 5.8E-09 73.0 10.8 117 33-216 13-131 (216)
152 cd00157 Rho Rho (Ras homology) 97.7 0.00012 2.5E-09 71.7 7.6 24 34-57 2-25 (171)
153 cd01884 EF_Tu EF-Tu subfamily. 97.7 0.00014 3E-09 74.1 8.3 68 129-217 63-133 (195)
154 TIGR00487 IF-2 translation ini 97.7 0.00023 5E-09 84.1 11.2 115 30-216 85-201 (587)
155 cd04177 RSR1 RSR1 subgroup. R 97.6 0.00039 8.5E-09 68.3 11.2 25 34-58 3-27 (168)
156 cd04137 RheB Rheb (Ras Homolog 97.6 0.00059 1.3E-08 67.7 12.5 24 34-57 3-26 (180)
157 KOG1191|consensus 97.6 0.0003 6.4E-09 78.9 11.2 95 32-182 268-362 (531)
158 cd04148 RGK RGK subfamily. Th 97.6 0.00035 7.6E-09 72.5 11.2 24 34-57 2-25 (221)
159 cd04147 Ras_dva Ras-dva subfam 97.6 0.00023 4.9E-09 72.3 9.5 24 34-57 1-24 (198)
160 PLN03118 Rab family protein; P 97.6 0.00052 1.1E-08 70.4 12.1 25 33-57 15-39 (211)
161 cd01855 YqeH YqeH. YqeH is an 97.6 0.00015 3.2E-09 73.2 7.8 25 33-57 128-152 (190)
162 PRK04004 translation initiatio 97.6 0.00026 5.7E-09 83.6 11.0 133 29-216 3-137 (586)
163 COG2262 HflX GTPases [General 97.6 0.00072 1.6E-08 74.7 13.3 148 8-217 160-319 (411)
164 PRK05306 infB translation init 97.6 0.0003 6.4E-09 85.3 11.3 114 30-216 288-403 (787)
165 cd04105 SR_beta Signal recogni 97.6 0.0005 1.1E-08 70.4 11.5 25 33-57 1-25 (203)
166 cd04144 Ras2 Ras2 subfamily. 97.6 0.00026 5.6E-09 71.3 9.2 68 132-216 48-120 (190)
167 cd04178 Nucleostemin_like Nucl 97.6 0.00022 4.8E-09 71.2 8.3 31 32-62 117-147 (172)
168 cd04117 Rab15 Rab15 subfamily. 97.6 0.00058 1.3E-08 66.8 11.3 117 34-217 2-120 (161)
169 PLN03127 Elongation factor Tu; 97.6 0.00019 4.1E-09 82.2 8.9 128 33-217 62-192 (447)
170 TIGR01393 lepA GTP-binding pro 97.6 0.00038 8.2E-09 82.5 11.7 128 34-216 5-136 (595)
171 smart00177 ARF ARF-like small 97.6 0.00031 6.7E-09 69.9 9.4 68 131-216 57-128 (175)
172 cd04107 Rab32_Rab38 Rab38/Rab3 97.6 0.00061 1.3E-08 69.3 11.6 24 34-57 2-25 (201)
173 TIGR02034 CysN sulfate adenyly 97.5 0.00038 8.2E-09 79.0 10.7 83 115-218 65-149 (406)
174 cd01900 YchF YchF subfamily. 97.5 0.00026 5.7E-09 75.8 8.9 38 35-72 1-38 (274)
175 cd04132 Rho4_like Rho4-like su 97.5 0.00053 1.1E-08 68.5 10.6 24 34-57 2-25 (187)
176 cd04150 Arf1_5_like Arf1-Arf5- 97.5 0.00047 1E-08 67.4 9.9 68 131-216 44-115 (159)
177 PTZ00369 Ras-like protein; Pro 97.5 0.00069 1.5E-08 68.2 11.3 25 33-57 6-30 (189)
178 smart00174 RHO Rho (Ras homolo 97.5 0.00037 8E-09 68.6 9.1 23 35-57 1-23 (174)
179 cd01851 GBP Guanylate-binding 97.5 0.00027 5.9E-09 73.6 8.5 36 31-67 6-45 (224)
180 PTZ00133 ADP-ribosylation fact 97.5 0.00077 1.7E-08 67.6 11.5 25 33-57 18-42 (182)
181 cd01885 EF2 EF2 (for archaea a 97.5 0.00071 1.5E-08 70.4 11.3 67 130-215 72-138 (222)
182 TIGR00475 selB selenocysteine- 97.5 0.0004 8.7E-09 82.2 10.6 66 131-217 50-118 (581)
183 PRK10512 selenocysteinyl-tRNA- 97.5 0.0005 1.1E-08 81.7 11.3 67 131-217 51-119 (614)
184 KOG2486|consensus 97.5 0.00027 5.9E-09 74.1 7.7 74 132-216 184-262 (320)
185 cd04146 RERG_RasL11_like RERG/ 97.5 0.00034 7.5E-09 68.3 8.2 24 34-57 1-24 (165)
186 PRK05124 cysN sulfate adenylyl 97.5 0.00091 2E-08 77.3 12.8 148 29-217 24-175 (474)
187 cd04126 Rab20 Rab20 subfamily. 97.5 0.00071 1.5E-08 70.3 10.5 24 34-57 2-25 (220)
188 PLN00223 ADP-ribosylation fact 97.5 0.00071 1.5E-08 67.9 10.2 68 131-216 61-132 (181)
189 cd01874 Cdc42 Cdc42 subfamily. 97.5 0.00069 1.5E-08 67.4 10.0 115 34-217 3-120 (175)
190 PRK12317 elongation factor 1-a 97.4 0.00077 1.7E-08 76.9 11.5 81 115-216 69-153 (425)
191 PF10662 PduV-EutP: Ethanolami 97.4 0.00066 1.4E-08 65.4 9.2 24 34-57 3-26 (143)
192 PLN03071 GTP-binding nuclear p 97.4 0.00046 9.9E-09 71.5 8.8 68 131-216 62-131 (219)
193 PTZ00258 GTP-binding protein; 97.4 0.00077 1.7E-08 75.5 10.5 44 30-73 19-62 (390)
194 cd01857 HSR1_MMR1 HSR1/MMR1. 97.4 0.00033 7.2E-09 67.3 6.7 24 34-57 85-108 (141)
195 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.4 0.0014 3.1E-08 68.1 11.6 115 34-217 3-120 (222)
196 cd00877 Ran Ran (Ras-related n 97.4 0.00065 1.4E-08 66.9 8.5 24 34-57 2-25 (166)
197 PRK09601 GTP-binding protein Y 97.4 0.00079 1.7E-08 74.6 9.9 38 33-71 3-41 (364)
198 CHL00071 tufA elongation facto 97.3 0.00073 1.6E-08 76.7 9.6 127 34-217 14-143 (409)
199 cd04128 Spg1 Spg1p. Spg1p (se 97.3 0.00083 1.8E-08 67.5 8.9 115 34-216 2-118 (182)
200 cd01870 RhoA_like RhoA-like su 97.3 0.00099 2.1E-08 65.5 9.4 25 33-57 2-26 (175)
201 TIGR03596 GTPase_YlqF ribosome 97.3 0.00089 1.9E-08 72.0 9.6 29 32-60 118-146 (276)
202 cd04135 Tc10 TC10 subfamily. 97.3 0.00065 1.4E-08 66.8 7.8 24 34-57 2-25 (174)
203 PRK12289 GTPase RsgA; Reviewed 97.3 0.00055 1.2E-08 76.0 7.9 24 34-57 174-197 (352)
204 cd04143 Rhes_like Rhes_like su 97.3 0.002 4.4E-08 68.1 11.8 24 34-57 2-25 (247)
205 cd04134 Rho3 Rho3 subfamily. 97.3 0.00078 1.7E-08 67.8 8.3 115 34-217 2-119 (189)
206 cd01899 Ygr210 Ygr210 subfamil 97.3 0.0006 1.3E-08 74.7 7.8 37 35-71 1-37 (318)
207 PRK14721 flhF flagellar biosyn 97.3 0.0011 2.3E-08 75.1 9.8 85 132-231 271-355 (420)
208 PRK09602 translation-associate 97.3 0.0007 1.5E-08 76.3 8.4 39 33-71 2-40 (396)
209 PRK00049 elongation factor Tu; 97.3 0.0012 2.6E-08 74.7 10.2 126 34-216 14-142 (396)
210 PRK00741 prfC peptide chain re 97.3 0.0029 6.2E-08 74.0 13.5 131 34-216 12-145 (526)
211 cd01856 YlqF YlqF. Proteins o 97.3 0.0014 3.1E-08 65.0 9.5 27 32-58 115-141 (171)
212 cd01883 EF1_alpha Eukaryotic e 97.3 0.0011 2.5E-08 68.5 9.1 20 35-54 2-21 (219)
213 TIGR00157 ribosome small subun 97.2 0.001 2.2E-08 70.3 8.6 25 33-57 121-145 (245)
214 PRK12288 GTPase RsgA; Reviewed 97.2 0.00091 2E-08 74.1 8.6 23 35-57 208-230 (347)
215 PLN03126 Elongation factor Tu; 97.2 0.0011 2.4E-08 76.5 9.5 126 34-216 83-211 (478)
216 TIGR02836 spore_IV_A stage IV 97.2 0.008 1.7E-07 67.1 15.6 40 18-62 8-47 (492)
217 cd01871 Rac1_like Rac1-like su 97.2 0.0017 3.7E-08 64.6 9.6 115 34-217 3-120 (174)
218 TIGR00437 feoB ferrous iron tr 97.2 0.002 4.3E-08 76.5 11.6 71 132-216 42-113 (591)
219 cd04121 Rab40 Rab40 subfamily. 97.2 0.0061 1.3E-07 61.8 13.6 68 131-216 55-124 (189)
220 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.2 0.0021 4.5E-08 67.4 10.5 116 32-216 13-131 (232)
221 TIGR01394 TypA_BipA GTP-bindin 97.2 0.0023 4.9E-08 75.9 12.0 125 34-216 3-130 (594)
222 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.2 0.0018 3.9E-08 65.2 9.7 115 34-217 7-124 (182)
223 PRK05433 GTP-binding protein L 97.2 0.0023 5E-08 76.0 12.1 128 34-216 9-140 (600)
224 cd04131 Rnd Rnd subfamily. Th 97.2 0.0015 3.2E-08 65.5 9.0 115 34-217 3-120 (178)
225 cd04130 Wrch_1 Wrch-1 subfamil 97.2 0.0014 2.9E-08 64.8 8.4 24 34-57 2-25 (173)
226 TIGR00483 EF-1_alpha translati 97.2 0.0027 5.9E-08 72.5 11.8 82 115-216 70-155 (426)
227 cd01875 RhoG RhoG subfamily. 97.1 0.0023 5E-08 64.7 9.7 115 34-217 5-122 (191)
228 PRK05506 bifunctional sulfate 97.1 0.0025 5.4E-08 76.5 11.6 68 129-216 102-171 (632)
229 PRK09563 rbgA GTPase YlqF; Rev 97.1 0.0017 3.8E-08 70.1 9.4 30 32-61 121-150 (287)
230 PF08477 Miro: Miro-like prote 97.1 0.00038 8.3E-09 64.1 3.5 24 34-57 1-24 (119)
231 COG0370 FeoB Fe2+ transport sy 97.1 0.0022 4.7E-08 75.1 10.3 118 33-217 4-123 (653)
232 PRK12739 elongation factor G; 97.1 0.0022 4.8E-08 77.7 10.8 131 32-217 8-140 (691)
233 PRK12735 elongation factor Tu; 97.1 0.0018 3.9E-08 73.2 9.3 22 34-55 14-35 (396)
234 TIGR00484 EF-G translation elo 97.1 0.0034 7.4E-08 76.0 12.0 131 32-217 10-142 (689)
235 PF00071 Ras: Ras family; Int 97.0 0.0034 7.4E-08 60.8 9.7 116 34-216 1-118 (162)
236 cd01892 Miro2 Miro2 subfamily. 97.0 0.0041 8.8E-08 61.5 10.3 25 33-57 5-29 (169)
237 TIGR00485 EF-Tu translation el 97.0 0.0024 5.2E-08 72.2 9.7 127 34-217 14-143 (394)
238 PRK06731 flhF flagellar biosyn 97.0 0.0026 5.6E-08 68.1 9.4 84 131-231 155-240 (270)
239 TIGR01425 SRP54_euk signal rec 97.0 0.024 5.3E-07 64.3 17.5 81 131-226 183-263 (429)
240 PRK12736 elongation factor Tu; 97.0 0.0024 5.1E-08 72.2 9.4 126 34-216 14-142 (394)
241 PRK00007 elongation factor G; 97.0 0.0035 7.6E-08 75.9 11.4 133 32-217 10-142 (693)
242 PRK13351 elongation factor G; 97.0 0.0037 8E-08 75.7 11.6 130 32-216 8-139 (687)
243 TIGR03597 GTPase_YqeH ribosome 97.0 0.0022 4.8E-08 71.6 8.7 24 33-56 155-178 (360)
244 cd01882 BMS1 Bms1. Bms1 is an 97.0 0.006 1.3E-07 63.6 11.3 26 30-55 36-62 (225)
245 cd04133 Rop_like Rop subfamily 96.9 0.0048 1E-07 61.8 9.8 115 34-217 3-120 (176)
246 cd04102 RabL3 RabL3 (Rab-like3 96.9 0.0043 9.3E-08 63.6 9.5 26 34-59 2-27 (202)
247 PRK10218 GTP-binding protein; 96.9 0.0044 9.6E-08 73.5 10.9 66 130-216 67-134 (607)
248 PRK14974 cell division protein 96.9 0.0058 1.3E-07 67.4 10.8 81 131-226 223-303 (336)
249 PF03193 DUF258: Protein of un 96.9 0.0011 2.3E-08 65.4 4.3 24 33-56 36-59 (161)
250 PRK04000 translation initiatio 96.8 0.0039 8.4E-08 70.9 9.3 22 34-55 11-32 (411)
251 TIGR03680 eif2g_arch translati 96.8 0.0052 1.1E-07 69.8 10.2 22 34-55 6-27 (406)
252 PRK11889 flhF flagellar biosyn 96.8 0.013 2.9E-07 65.4 12.9 86 131-231 321-406 (436)
253 PRK13796 GTPase YqeH; Provisio 96.8 0.0023 5E-08 71.6 6.9 22 34-55 162-183 (365)
254 TIGR00503 prfC peptide chain r 96.7 0.011 2.4E-07 69.2 12.2 66 130-216 79-146 (527)
255 cd04129 Rho2 Rho2 subfamily. 96.7 0.0065 1.4E-07 61.0 9.1 24 34-57 3-26 (187)
256 COG2229 Predicted GTPase [Gene 96.7 0.019 4.2E-07 57.1 11.8 137 30-226 8-147 (187)
257 COG5019 CDC3 Septin family pro 96.7 0.012 2.6E-07 64.4 11.4 81 131-217 82-177 (373)
258 COG1163 DRG Predicted GTPase [ 96.7 0.0022 4.7E-08 68.9 5.5 45 12-56 33-87 (365)
259 KOG1547|consensus 96.7 0.044 9.5E-07 56.7 14.5 80 131-216 104-198 (336)
260 PRK12726 flagellar biosynthesi 96.7 0.018 4E-07 64.1 12.9 151 34-227 208-367 (407)
261 PRK14722 flhF flagellar biosyn 96.7 0.0032 6.9E-08 70.3 6.9 22 34-55 139-160 (374)
262 PRK10416 signal recognition pa 96.7 0.0072 1.6E-07 66.3 9.5 22 34-55 116-137 (318)
263 cd01854 YjeQ_engC YjeQ/EngC. 96.7 0.007 1.5E-07 65.5 9.1 25 33-57 162-186 (287)
264 smart00176 RAN Ran (Ras-relate 96.6 0.0059 1.3E-07 62.5 8.0 68 131-216 44-113 (200)
265 PRK14723 flhF flagellar biosyn 96.6 0.0051 1.1E-07 74.1 8.3 172 34-251 187-367 (767)
266 PRK05703 flhF flagellar biosyn 96.6 0.018 4E-07 65.6 12.5 87 131-231 300-386 (424)
267 PTZ00141 elongation factor 1- 96.6 0.0062 1.3E-07 69.9 8.3 65 129-214 83-157 (446)
268 PRK07560 elongation factor EF- 96.5 0.02 4.4E-07 69.9 13.1 131 31-215 19-152 (731)
269 PTZ00416 elongation factor 2; 96.5 0.0088 1.9E-07 73.9 9.9 65 132-215 93-157 (836)
270 TIGR00490 aEF-2 translation el 96.5 0.015 3.2E-07 70.9 11.6 66 130-216 85-152 (720)
271 KOG2655|consensus 96.5 0.023 4.9E-07 62.7 11.8 82 131-218 79-174 (366)
272 PRK00098 GTPase RsgA; Reviewed 96.5 0.0081 1.8E-07 65.3 8.3 23 34-56 166-188 (298)
273 KOG1954|consensus 96.5 0.0021 4.4E-08 69.8 3.4 161 28-217 54-226 (532)
274 PF00448 SRP54: SRP54-type pro 96.4 0.0091 2E-07 61.0 7.9 85 131-231 84-169 (196)
275 PRK12724 flagellar biosynthesi 96.4 0.021 4.6E-07 64.5 11.3 21 35-55 226-246 (432)
276 PF09439 SRPRB: Signal recogni 96.4 0.0073 1.6E-07 60.7 6.8 129 32-230 3-142 (181)
277 PRK12727 flagellar biosynthesi 96.4 0.014 3.1E-07 67.5 9.9 22 34-55 352-373 (559)
278 COG1161 Predicted GTPases [Gen 96.4 0.01 2.3E-07 65.2 8.6 39 17-57 119-157 (322)
279 cd01859 MJ1464 MJ1464. This f 96.4 0.016 3.4E-07 56.4 9.0 25 32-56 101-125 (156)
280 PRK00771 signal recognition pa 96.4 0.031 6.8E-07 63.8 12.5 80 132-226 177-256 (437)
281 PLN00043 elongation factor 1-a 96.4 0.01 2.2E-07 68.3 8.6 69 129-216 83-159 (447)
282 PTZ00327 eukaryotic translatio 96.3 0.018 4E-07 66.2 10.4 66 132-217 118-186 (460)
283 PLN00116 translation elongatio 96.2 0.037 8.1E-07 68.6 13.1 26 30-55 17-42 (843)
284 PF00025 Arf: ADP-ribosylation 96.2 0.021 4.5E-07 56.9 8.8 97 131-246 58-158 (175)
285 PRK10867 signal recognition pa 96.2 0.045 9.7E-07 62.5 12.4 87 130-231 183-269 (433)
286 KOG0094|consensus 96.2 0.025 5.4E-07 56.8 8.9 71 130-217 70-143 (221)
287 PLN00023 GTP-binding protein; 96.1 0.025 5.4E-07 61.9 9.6 28 30-57 19-46 (334)
288 KOG1489|consensus 95.9 0.02 4.3E-07 61.5 7.5 25 32-56 196-220 (366)
289 TIGR00064 ftsY signal recognit 95.9 0.022 4.8E-07 61.1 7.9 22 34-55 74-95 (272)
290 KOG0410|consensus 95.9 0.065 1.4E-06 57.8 11.0 44 22-66 169-212 (410)
291 cd01873 RhoBTB RhoBTB subfamil 95.8 0.038 8.3E-07 56.2 8.9 66 131-216 66-134 (195)
292 PRK12723 flagellar biosynthesi 95.8 0.2 4.4E-06 56.4 15.3 85 131-231 255-341 (388)
293 PRK12740 elongation factor G; 95.7 0.044 9.4E-07 66.3 10.4 67 130-217 59-127 (668)
294 TIGR00959 ffh signal recogniti 95.7 0.047 1E-06 62.2 9.6 86 131-231 183-268 (428)
295 COG1162 Predicted GTPases [Gen 95.6 0.023 5E-07 61.2 6.6 22 34-55 166-187 (301)
296 cd03114 ArgK-like The function 95.6 0.048 1E-06 53.1 8.3 21 35-55 2-22 (148)
297 PRK13768 GTPase; Provisional 95.6 0.056 1.2E-06 57.4 9.4 76 132-218 98-178 (253)
298 cd03276 ABC_SMC6_euk Eukaryoti 95.5 0.028 6.2E-07 57.3 6.4 66 129-200 130-197 (198)
299 PTZ00132 GTP-binding nuclear p 95.4 0.13 2.8E-06 52.7 11.0 26 30-55 7-33 (215)
300 cd03115 SRP The signal recogni 95.2 0.067 1.4E-06 53.0 8.0 81 131-226 83-163 (173)
301 KOG1490|consensus 95.1 0.078 1.7E-06 60.1 8.8 79 130-217 214-296 (620)
302 COG5256 TEF1 Translation elong 95.1 0.13 2.8E-06 57.4 10.2 70 129-217 83-160 (428)
303 KOG1532|consensus 95.0 0.035 7.6E-07 58.5 5.3 41 30-76 17-57 (366)
304 KOG0093|consensus 94.9 0.41 9E-06 46.1 11.6 117 34-217 23-141 (193)
305 TIGR00092 GTP-binding protein 94.8 0.21 4.4E-06 55.8 11.1 37 34-70 4-41 (368)
306 PRK06995 flhF flagellar biosyn 94.7 0.27 5.8E-06 56.9 12.0 100 132-251 336-435 (484)
307 KOG2203|consensus 94.6 0.039 8.4E-07 62.8 4.8 29 29-57 34-62 (772)
308 KOG0446|consensus 94.6 0.013 2.9E-07 69.9 1.3 266 29-321 183-452 (657)
309 COG1101 PhnK ABC-type uncharac 94.4 0.03 6.6E-07 57.3 3.0 32 30-63 27-61 (263)
310 COG1136 SalX ABC-type antimicr 94.3 0.035 7.6E-07 57.7 3.4 30 35-66 34-63 (226)
311 KOG0458|consensus 94.2 0.059 1.3E-06 62.1 5.2 101 114-234 239-347 (603)
312 PF00005 ABC_tran: ABC transpo 94.2 0.03 6.6E-07 52.9 2.5 30 34-65 13-42 (137)
313 COG0536 Obg Predicted GTPase [ 94.1 0.33 7.2E-06 53.0 10.2 22 35-56 162-183 (369)
314 PF13555 AAA_29: P-loop contai 93.9 0.056 1.2E-06 44.6 3.1 21 34-54 25-45 (62)
315 COG4107 PhnK ABC-type phosphon 93.6 0.056 1.2E-06 53.6 3.1 31 34-66 34-64 (258)
316 TIGR00750 lao LAO/AO transport 93.6 0.37 8E-06 52.5 9.9 25 31-55 33-57 (300)
317 TIGR03348 VI_IcmF type VI secr 93.6 0.34 7.4E-06 62.3 11.1 33 28-62 107-139 (1169)
318 cd03280 ABC_MutS2 MutS2 homolo 93.6 0.28 6.1E-06 50.0 8.4 33 29-62 23-65 (200)
319 KOG0092|consensus 93.4 0.15 3.2E-06 51.3 5.7 24 34-57 7-30 (200)
320 TIGR01166 cbiO cobalt transpor 93.4 0.065 1.4E-06 54.0 3.4 30 34-65 20-49 (190)
321 cd01130 VirB11-like_ATPase Typ 93.4 0.061 1.3E-06 54.2 3.1 30 35-66 28-57 (186)
322 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.4 0.063 1.4E-06 55.2 3.3 30 34-65 32-61 (218)
323 cd03261 ABC_Org_Solvent_Resist 93.4 0.063 1.4E-06 56.0 3.3 30 34-65 28-57 (235)
324 cd03225 ABC_cobalt_CbiO_domain 93.3 0.068 1.5E-06 54.7 3.4 29 35-65 30-58 (211)
325 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.3 0.068 1.5E-06 51.6 3.3 30 35-66 29-58 (144)
326 COG3840 ThiQ ABC-type thiamine 93.2 0.071 1.5E-06 53.3 3.2 29 34-63 27-55 (231)
327 cd03264 ABC_drug_resistance_li 93.2 0.072 1.6E-06 54.5 3.4 30 34-65 27-56 (211)
328 cd03218 ABC_YhbG The ABC trans 93.2 0.078 1.7E-06 55.1 3.6 29 35-65 29-57 (232)
329 cd03224 ABC_TM1139_LivF_branch 93.1 0.076 1.7E-06 54.7 3.4 30 34-65 28-57 (222)
330 KOG1145|consensus 93.1 0.72 1.6E-05 53.2 11.1 76 125-223 195-272 (683)
331 cd03266 ABC_NatA_sodium_export 93.1 0.077 1.7E-06 54.6 3.4 29 35-65 34-62 (218)
332 cd03269 ABC_putative_ATPase Th 93.1 0.077 1.7E-06 54.3 3.3 34 30-65 23-57 (210)
333 cd03263 ABC_subfamily_A The AB 93.0 0.079 1.7E-06 54.6 3.4 29 35-65 31-59 (220)
334 TIGR02673 FtsE cell division A 93.0 0.079 1.7E-06 54.3 3.4 29 35-65 31-59 (214)
335 cd03226 ABC_cobalt_CbiO_domain 93.0 0.078 1.7E-06 54.1 3.3 29 35-65 29-57 (205)
336 COG0410 LivF ABC-type branched 93.0 0.081 1.8E-06 54.8 3.4 28 35-64 32-59 (237)
337 cd03215 ABC_Carb_Monos_II This 93.0 0.088 1.9E-06 52.7 3.6 30 34-65 28-57 (182)
338 cd00267 ABC_ATPase ABC (ATP-bi 93.0 0.085 1.8E-06 51.4 3.4 32 34-67 27-58 (157)
339 COG0532 InfB Translation initi 93.0 0.58 1.3E-05 53.9 10.4 115 30-216 3-121 (509)
340 PF05879 RHD3: Root hair defec 92.9 0.055 1.2E-06 66.0 2.4 24 38-62 1-24 (742)
341 cd03259 ABC_Carb_Solutes_like 92.9 0.082 1.8E-06 54.2 3.3 29 35-65 29-57 (213)
342 cd03222 ABC_RNaseL_inhibitor T 92.9 0.082 1.8E-06 53.1 3.2 31 34-66 27-57 (177)
343 PRK11629 lolD lipoprotein tran 92.9 0.08 1.7E-06 55.2 3.3 30 35-66 38-67 (233)
344 PRK13541 cytochrome c biogenes 92.9 0.092 2E-06 53.2 3.6 31 34-66 28-58 (195)
345 TIGR00960 3a0501s02 Type II (G 92.9 0.085 1.8E-06 54.2 3.3 30 34-65 31-60 (216)
346 TIGR02315 ABC_phnC phosphonate 92.8 0.084 1.8E-06 55.3 3.3 29 34-64 30-58 (243)
347 cd03265 ABC_DrrA DrrA is the A 92.8 0.085 1.9E-06 54.4 3.3 29 35-65 29-57 (220)
348 cd03243 ABC_MutS_homologs The 92.8 0.55 1.2E-05 47.8 9.2 24 34-57 31-54 (202)
349 cd03293 ABC_NrtD_SsuB_transpor 92.8 0.087 1.9E-06 54.3 3.3 29 35-65 33-61 (220)
350 cd03229 ABC_Class3 This class 92.8 0.097 2.1E-06 52.2 3.6 30 34-65 28-57 (178)
351 cd03262 ABC_HisP_GlnQ_permease 92.8 0.091 2E-06 53.8 3.4 30 34-65 28-57 (213)
352 cd03292 ABC_FtsE_transporter F 92.8 0.087 1.9E-06 53.9 3.3 28 35-64 30-57 (214)
353 cd03230 ABC_DR_subfamily_A Thi 92.8 0.094 2E-06 52.1 3.4 30 34-65 28-57 (173)
354 COG1120 FepC ABC-type cobalami 92.7 0.093 2E-06 55.7 3.4 33 30-64 23-58 (258)
355 cd03256 ABC_PhnC_transporter A 92.6 0.094 2E-06 54.7 3.4 30 34-65 29-58 (241)
356 PRK13540 cytochrome c biogenes 92.6 0.097 2.1E-06 53.2 3.4 29 34-64 29-57 (200)
357 cd03254 ABCC_Glucan_exporter_l 92.6 0.097 2.1E-06 54.3 3.4 29 35-65 32-60 (229)
358 TIGR03263 guanyl_kin guanylate 92.6 0.11 2.4E-06 51.5 3.8 21 35-55 4-24 (180)
359 cd00071 GMPK Guanosine monopho 92.6 0.11 2.4E-06 49.8 3.5 33 35-69 2-38 (137)
360 cd03258 ABC_MetN_methionine_tr 92.6 0.099 2.1E-06 54.4 3.5 30 34-65 33-62 (233)
361 PRK13651 cobalt transporter AT 92.6 0.093 2E-06 57.3 3.4 31 34-66 35-65 (305)
362 PRK15177 Vi polysaccharide exp 92.6 0.1 2.2E-06 53.8 3.5 30 35-66 16-45 (213)
363 KOG1486|consensus 92.6 0.17 3.7E-06 52.7 5.0 24 33-56 63-86 (364)
364 KOG0075|consensus 92.6 0.34 7.3E-06 46.7 6.5 69 130-216 64-136 (186)
365 cd03278 ABC_SMC_barmotin Barmo 92.6 0.067 1.4E-06 54.6 2.1 24 32-55 22-45 (197)
366 PRK15112 antimicrobial peptide 92.5 0.1 2.3E-06 55.6 3.6 30 35-66 42-71 (267)
367 cd03219 ABC_Mj1267_LivG_branch 92.5 0.098 2.1E-06 54.5 3.3 29 34-64 28-56 (236)
368 cd03268 ABC_BcrA_bacitracin_re 92.5 0.099 2.2E-06 53.4 3.3 29 35-65 29-57 (208)
369 cd03249 ABC_MTABC3_MDL1_MDL2 M 92.5 0.098 2.1E-06 54.6 3.3 35 30-66 26-61 (238)
370 TIGR03608 L_ocin_972_ABC putat 92.5 0.1 2.2E-06 53.1 3.4 29 34-64 26-54 (206)
371 KOG0078|consensus 92.5 0.71 1.5E-05 47.1 9.2 120 29-216 9-131 (207)
372 cd03236 ABC_RNaseL_inhibitor_d 92.5 0.1 2.2E-06 55.5 3.4 31 34-66 28-58 (255)
373 cd03369 ABCC_NFT1 Domain 2 of 92.5 0.1 2.2E-06 53.3 3.3 31 34-66 36-66 (207)
374 cd04103 Centaurin_gamma Centau 92.5 0.11 2.4E-06 50.8 3.4 24 34-57 2-25 (158)
375 PRK14250 phosphate ABC transpo 92.4 0.11 2.3E-06 54.7 3.4 31 34-66 31-61 (241)
376 cd03216 ABC_Carb_Monos_I This 92.4 0.11 2.4E-06 51.1 3.4 30 34-65 28-57 (163)
377 cd03246 ABCC_Protease_Secretio 92.4 0.11 2.3E-06 51.7 3.3 30 34-65 30-59 (173)
378 cd03223 ABCD_peroxisomal_ALDP 92.4 0.11 2.5E-06 51.2 3.4 30 34-65 29-58 (166)
379 COG1121 ZnuC ABC-type Mn/Zn tr 92.4 0.11 2.3E-06 55.0 3.4 33 35-69 33-65 (254)
380 cd03298 ABC_ThiQ_thiamine_tran 92.4 0.11 2.4E-06 53.2 3.4 30 34-65 26-55 (211)
381 TIGR03864 PQQ_ABC_ATP ABC tran 92.4 0.1 2.3E-06 54.4 3.3 29 35-65 30-58 (236)
382 TIGR01978 sufC FeS assembly AT 92.4 0.11 2.5E-06 54.2 3.6 32 34-65 28-59 (243)
383 cd03235 ABC_Metallic_Cations A 92.4 0.11 2.4E-06 53.3 3.4 30 34-65 27-56 (213)
384 PRK10895 lipopolysaccharide AB 92.3 0.11 2.4E-06 54.4 3.4 30 34-65 31-60 (241)
385 cd03257 ABC_NikE_OppD_transpor 92.3 0.11 2.4E-06 53.6 3.4 30 34-65 33-62 (228)
386 TIGR03410 urea_trans_UrtE urea 92.3 0.11 2.4E-06 53.9 3.4 29 35-65 29-57 (230)
387 cd03231 ABC_CcmA_heme_exporter 92.3 0.12 2.7E-06 52.6 3.7 30 34-65 28-57 (201)
388 PRK13543 cytochrome c biogenes 92.3 0.12 2.6E-06 53.2 3.5 31 34-66 39-69 (214)
389 PRK11124 artP arginine transpo 92.3 0.11 2.4E-06 54.4 3.3 29 35-65 31-59 (242)
390 cd03260 ABC_PstB_phosphate_tra 92.3 0.099 2.1E-06 54.2 3.0 21 35-55 29-49 (227)
391 TIGR02211 LolD_lipo_ex lipopro 92.3 0.12 2.5E-06 53.4 3.4 29 34-64 33-61 (221)
392 cd03301 ABC_MalK_N The N-termi 92.3 0.11 2.5E-06 53.1 3.3 30 34-65 28-57 (213)
393 cd03228 ABCC_MRP_Like The MRP 92.2 0.12 2.6E-06 51.2 3.4 30 34-65 30-59 (171)
394 cd03253 ABCC_ATM1_transporter 92.2 0.11 2.5E-06 54.0 3.4 29 35-65 30-58 (236)
395 cd03217 ABC_FeS_Assembly ABC-t 92.2 0.12 2.7E-06 52.5 3.5 32 34-65 28-59 (200)
396 COG4559 ABC-type hemin transpo 92.2 0.12 2.6E-06 53.0 3.3 31 35-67 30-60 (259)
397 KOG0091|consensus 92.2 0.28 6E-06 48.0 5.6 75 34-109 10-111 (213)
398 PRK10584 putative ABC transpor 92.2 0.12 2.5E-06 53.7 3.4 29 34-64 38-66 (228)
399 PRK11248 tauB taurine transpor 92.2 0.12 2.6E-06 54.9 3.5 29 35-65 30-58 (255)
400 cd03245 ABCC_bacteriocin_expor 92.2 0.12 2.6E-06 53.2 3.4 30 35-66 33-62 (220)
401 PRK13641 cbiO cobalt transport 92.2 0.11 2.5E-06 56.0 3.4 30 35-66 36-65 (287)
402 TIGR02323 CP_lyasePhnK phospho 92.1 0.12 2.6E-06 54.5 3.4 30 34-65 31-60 (253)
403 CHL00131 ycf16 sulfate ABC tra 92.1 0.13 2.7E-06 54.3 3.6 31 34-64 35-65 (252)
404 TIGR02324 CP_lyasePhnL phospho 92.1 0.13 2.7E-06 53.3 3.5 30 34-65 36-65 (224)
405 COG0050 TufB GTPases - transla 92.1 0.52 1.1E-05 50.4 7.9 128 35-217 15-143 (394)
406 COG3910 Predicted ATPase [Gene 92.1 0.17 3.6E-06 51.0 4.0 35 29-63 34-69 (233)
407 cd03300 ABC_PotA_N PotA is an 92.0 0.13 2.8E-06 53.6 3.5 31 34-66 28-58 (232)
408 cd03232 ABC_PDR_domain2 The pl 92.0 0.14 3E-06 51.9 3.5 32 34-65 35-66 (192)
409 cd03250 ABCC_MRP_domain1 Domai 92.0 0.13 2.9E-06 52.3 3.4 31 34-66 33-63 (204)
410 cd03297 ABC_ModC_molybdenum_tr 92.0 0.13 2.9E-06 52.7 3.4 38 25-64 16-53 (214)
411 TIGR01184 ntrCD nitrate transp 91.9 0.13 2.9E-06 53.5 3.5 30 34-65 13-42 (230)
412 PRK10908 cell division protein 91.9 0.13 2.8E-06 53.2 3.3 29 35-65 31-59 (222)
413 cd03252 ABCC_Hemolysin The ABC 91.9 0.13 2.8E-06 53.6 3.4 29 34-64 30-58 (237)
414 PRK13538 cytochrome c biogenes 91.9 0.14 3E-06 52.3 3.4 30 34-65 29-58 (204)
415 cd03251 ABCC_MsbA MsbA is an e 91.9 0.13 2.8E-06 53.5 3.3 29 35-65 31-59 (234)
416 PRK13539 cytochrome c biogenes 91.9 0.14 3E-06 52.5 3.4 30 35-66 31-60 (207)
417 TIGR03740 galliderm_ABC gallid 91.9 0.13 2.9E-06 53.1 3.3 30 34-65 28-57 (223)
418 cd03295 ABC_OpuCA_Osmoprotecti 91.9 0.14 2.9E-06 53.8 3.4 29 35-65 30-58 (242)
419 PRK00300 gmk guanylate kinase; 91.9 0.14 3E-06 52.1 3.4 36 34-69 7-43 (205)
420 PF03205 MobB: Molybdopterin g 91.9 0.13 2.8E-06 49.6 3.0 23 33-55 1-23 (140)
421 cd03233 ABC_PDR_domain1 The pl 91.8 0.13 2.7E-06 52.6 3.1 23 34-56 35-57 (202)
422 PF13521 AAA_28: AAA domain; P 91.8 0.1 2.2E-06 51.2 2.3 22 34-55 1-22 (163)
423 cd03214 ABC_Iron-Siderophores_ 91.8 0.15 3.1E-06 51.1 3.5 30 34-65 27-56 (180)
424 PRK10247 putative ABC transpor 91.8 0.14 3E-06 53.2 3.4 29 35-65 36-64 (225)
425 PRK13643 cbiO cobalt transport 91.8 0.13 2.8E-06 55.6 3.3 30 34-65 34-63 (288)
426 PRK13645 cbiO cobalt transport 91.8 0.14 3E-06 55.4 3.4 30 34-65 39-68 (289)
427 PRK13635 cbiO cobalt transport 91.8 0.14 2.9E-06 55.2 3.4 29 35-65 36-64 (279)
428 PRK13632 cbiO cobalt transport 91.8 0.14 2.9E-06 54.9 3.3 29 34-64 37-65 (271)
429 KOG1424|consensus 91.7 0.21 4.5E-06 57.1 4.8 25 33-57 315-339 (562)
430 TIGR00968 3a0106s01 sulfate AB 91.7 0.14 3E-06 53.6 3.3 31 34-66 28-58 (237)
431 PRK13652 cbiO cobalt transport 91.7 0.14 2.9E-06 55.1 3.3 29 35-65 33-61 (277)
432 PRK13638 cbiO cobalt transport 91.7 0.14 3E-06 54.8 3.3 30 34-65 29-58 (271)
433 PRK11247 ssuB aliphatic sulfon 91.7 0.14 3E-06 54.5 3.3 30 34-65 40-69 (257)
434 PRK13633 cobalt transporter AT 91.7 0.14 3E-06 55.1 3.4 30 35-66 39-68 (280)
435 TIGR01277 thiQ thiamine ABC tr 91.7 0.14 3.1E-06 52.5 3.4 29 35-65 27-55 (213)
436 TIGR01189 ccmA heme ABC export 91.7 0.15 3.2E-06 51.8 3.4 29 34-64 28-56 (198)
437 cd03247 ABCC_cytochrome_bd The 91.7 0.15 3.3E-06 50.8 3.4 28 35-64 31-58 (178)
438 cd03294 ABC_Pro_Gly_Bertaine T 91.7 0.14 3E-06 54.7 3.4 28 35-64 53-80 (269)
439 cd03296 ABC_CysA_sulfate_impor 91.7 0.14 3E-06 53.6 3.3 28 35-64 31-58 (239)
440 COG1419 FlhF Flagellar GTP-bin 91.7 1.3 2.8E-05 49.8 10.9 154 35-231 206-367 (407)
441 cd03273 ABC_SMC2_euk Eukaryoti 91.7 0.14 2.9E-06 54.2 3.2 26 30-55 23-48 (251)
442 cd03237 ABC_RNaseL_inhibitor_d 91.6 0.15 3.3E-06 53.9 3.5 31 34-66 27-57 (246)
443 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 91.6 0.14 3.1E-06 53.1 3.3 29 35-65 51-79 (224)
444 cd03291 ABCC_CFTR1 The CFTR su 91.6 0.16 3.4E-06 54.9 3.7 30 35-66 66-95 (282)
445 PRK10253 iron-enterobactin tra 91.6 0.15 3.3E-06 54.3 3.5 30 34-65 35-64 (265)
446 COG1116 TauB ABC-type nitrate/ 91.6 0.16 3.4E-06 53.4 3.4 22 35-56 32-53 (248)
447 TIGR03411 urea_trans_UrtD urea 91.6 0.15 3.3E-06 53.3 3.5 30 35-66 31-60 (242)
448 TIGR02982 heterocyst_DevA ABC 91.5 0.15 3.2E-06 52.6 3.3 30 34-65 33-62 (220)
449 KOG1707|consensus 91.5 0.13 2.8E-06 59.5 2.9 25 33-57 10-34 (625)
450 KOG2485|consensus 91.5 0.45 9.7E-06 51.4 6.8 48 7-55 119-166 (335)
451 cd03281 ABC_MSH5_euk MutS5 hom 91.5 1.1 2.3E-05 46.4 9.5 22 34-55 31-52 (213)
452 PRK13546 teichoic acids export 91.4 0.16 3.5E-06 54.3 3.5 30 35-66 53-82 (264)
453 TIGR02769 nickel_nikE nickel i 91.4 0.16 3.4E-06 54.2 3.4 30 34-65 39-68 (265)
454 PRK11264 putative amino-acid A 91.4 0.15 3.3E-06 53.5 3.3 29 35-65 32-60 (250)
455 PRK13639 cbiO cobalt transport 91.4 0.16 3.6E-06 54.4 3.6 31 34-66 30-60 (275)
456 PRK13851 type IV secretion sys 91.4 0.15 3.2E-06 56.6 3.3 30 35-66 165-194 (344)
457 PRK10575 iron-hydroxamate tran 91.4 0.16 3.4E-06 54.1 3.4 29 35-65 40-68 (265)
458 PRK13648 cbiO cobalt transport 91.4 0.15 3.3E-06 54.4 3.3 30 34-65 37-66 (269)
459 PRK11614 livF leucine/isoleuci 91.4 0.16 3.5E-06 53.0 3.4 29 34-64 33-61 (237)
460 PRK10619 histidine/lysine/argi 91.4 0.16 3.4E-06 53.8 3.3 30 35-66 34-63 (257)
461 TIGR03873 F420-0_ABC_ATP propo 91.3 0.18 3.8E-06 53.4 3.6 29 35-65 30-58 (256)
462 PRK11300 livG leucine/isoleuci 91.3 0.16 3.5E-06 53.6 3.3 29 35-65 34-62 (255)
463 PRK09580 sufC cysteine desulfu 91.3 0.16 3.6E-06 53.2 3.4 31 34-64 29-59 (248)
464 TIGR03771 anch_rpt_ABC anchore 91.3 0.17 3.6E-06 52.5 3.4 30 34-65 8-37 (223)
465 cd03248 ABCC_TAP TAP, the Tran 91.3 0.16 3.6E-06 52.5 3.3 29 34-64 42-70 (226)
466 COG4988 CydD ABC-type transpor 91.3 0.17 3.6E-06 58.8 3.6 29 34-64 349-377 (559)
467 cd03244 ABCC_MRP_domain2 Domai 91.3 0.17 3.7E-06 52.1 3.4 29 35-65 33-61 (221)
468 COG0012 Predicted GTPase, prob 91.2 0.6 1.3E-05 51.7 7.6 24 33-56 3-26 (372)
469 PRK11701 phnK phosphonate C-P 91.2 0.18 3.8E-06 53.5 3.4 29 34-64 34-62 (258)
470 PRK13647 cbiO cobalt transport 91.2 0.17 3.6E-06 54.4 3.3 29 35-65 34-62 (274)
471 PRK13649 cbiO cobalt transport 91.1 0.17 3.6E-06 54.4 3.3 29 34-64 35-63 (280)
472 PF04670 Gtr1_RagA: Gtr1/RagA 91.1 0.64 1.4E-05 48.8 7.5 120 34-217 1-126 (232)
473 COG4525 TauB ABC-type taurine 91.1 0.18 3.9E-06 51.1 3.1 31 34-66 33-63 (259)
474 PRK11831 putative ABC transpor 91.0 0.18 3.9E-06 53.9 3.4 29 34-64 35-63 (269)
475 TIGR03005 ectoine_ehuA ectoine 91.0 0.18 3.9E-06 53.2 3.3 29 35-65 29-57 (252)
476 PRK13636 cbiO cobalt transport 91.0 0.18 3.9E-06 54.4 3.3 31 34-66 34-64 (283)
477 PRK13637 cbiO cobalt transport 90.9 0.18 3.9E-06 54.5 3.3 29 34-64 35-63 (287)
478 cd03290 ABCC_SUR1_N The SUR do 90.9 0.2 4.2E-06 51.6 3.4 28 34-63 29-56 (218)
479 PRK09544 znuC high-affinity zi 90.9 0.18 4E-06 53.3 3.3 29 35-65 33-61 (251)
480 TIGR02788 VirB11 P-type DNA tr 90.9 0.18 3.9E-06 55.2 3.2 30 34-65 146-175 (308)
481 PRK15056 manganese/iron transp 90.9 0.18 4E-06 53.9 3.3 29 34-64 35-63 (272)
482 PRK09493 glnQ glutamine ABC tr 90.9 0.19 4.1E-06 52.6 3.3 30 34-65 29-58 (240)
483 KOG0090|consensus 90.8 0.72 1.6E-05 47.3 7.2 22 33-54 39-60 (238)
484 PRK13631 cbiO cobalt transport 90.8 0.2 4.2E-06 55.2 3.5 31 34-66 54-84 (320)
485 PRK10771 thiQ thiamine transpo 90.8 0.2 4.4E-06 52.1 3.4 29 34-64 27-55 (232)
486 COG5192 BMS1 GTP-binding prote 90.8 1 2.2E-05 51.8 8.9 28 28-55 64-92 (1077)
487 TIGR01360 aden_kin_iso1 adenyl 90.8 0.18 3.8E-06 50.3 2.8 27 31-57 2-31 (188)
488 PRK13644 cbiO cobalt transport 90.7 0.2 4.4E-06 53.7 3.4 30 34-65 30-59 (274)
489 PRK13548 hmuV hemin importer A 90.7 0.2 4.4E-06 53.1 3.4 28 35-64 31-58 (258)
490 PRK11231 fecE iron-dicitrate t 90.7 0.2 4.4E-06 52.9 3.4 34 30-65 25-59 (255)
491 COG1126 GlnQ ABC-type polar am 90.6 0.23 5E-06 51.1 3.4 27 35-63 31-57 (240)
492 TIGR01188 drrA daunorubicin re 90.6 0.2 4.4E-06 54.5 3.3 30 35-66 22-51 (302)
493 PRK13646 cbiO cobalt transport 90.6 0.21 4.5E-06 54.0 3.4 28 35-64 36-63 (286)
494 PRK13547 hmuV hemin importer A 90.5 0.21 4.6E-06 53.6 3.3 27 30-56 24-51 (272)
495 COG3839 MalK ABC-type sugar tr 90.5 0.23 4.9E-06 54.8 3.5 27 35-63 32-58 (338)
496 TIGR01288 nodI ATP-binding ABC 90.5 0.21 4.6E-06 54.4 3.3 31 34-66 32-62 (303)
497 cd03213 ABCG_EPDR ABCG transpo 90.4 0.22 4.8E-06 50.4 3.3 31 34-64 37-67 (194)
498 KOG0084|consensus 90.4 1.1 2.4E-05 45.4 7.9 114 32-217 9-129 (205)
499 cd03267 ABC_NatA_like Similar 90.3 0.23 4.9E-06 52.0 3.3 28 35-64 50-77 (236)
500 PRK13634 cbiO cobalt transport 90.3 0.22 4.8E-06 53.9 3.3 30 34-65 35-64 (290)
No 1
>KOG0446|consensus
Probab=100.00 E-value=1.1e-118 Score=1038.88 Aligned_cols=646 Identities=38% Similarity=0.545 Sum_probs=576.1
Q ss_pred ChhhhHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccc---c
Q psy3395 4 NPGLEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMT---E 80 (775)
Q Consensus 4 ~~~m~~li~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~---~ 80 (775)
|..|+.++|++|++||++..+|....++||+|||||+||||||||||+|+|++|||||+|+|||||++++|.+... +
T Consensus 1 ~~~~~~li~~vn~lqd~~~~l~~~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e 80 (657)
T KOG0446|consen 1 RGLMRLLIPLSNPLQDKLEILGSSSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEE 80 (657)
T ss_pred CchhhhccccchHHHHHHHHhcCCCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCccc
Confidence 4579999999999999999999778899999999999999999999999999999999999999999999998764 8
Q ss_pred ceeee-ccCCccccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHH
Q psy3395 81 YAEFL-HCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKD 159 (775)
Q Consensus 81 ~~~~~-~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~ 159 (775)
|++|+ |.++..++||++++++|+.+|++++|.++|+|+.||.|+|++|++++||||||||++++|++|||.|++.+|++
T Consensus 81 ~~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~ 160 (657)
T KOG0446|consen 81 EASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKS 160 (657)
T ss_pred chhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCChhcHHHHHhhcccccccCCCeE
Q psy3395 160 MLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCL 239 (775)
Q Consensus 160 lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~~d~~~~l~~~~~~~l~~G~~~ 239 (775)
|++.|+++++||||+|+|||+|++|++++++|+++||.|.||+|| +||.|+||+|+|+.++|.|+.++ +++| |
T Consensus 161 mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigv----itK~DlmdkGt~~~~~L~g~~~~-l~~g--~ 233 (657)
T KOG0446|consen 161 MIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEV----ITKFDFMDKGTNAVTRLVGRPIT-LKVG--Y 233 (657)
T ss_pred HHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHH----hhhHHhhhcCCcceeeecCCccc-cccc--e
Confidence 999999999999999999999999999999999999999999999 99999999999999999999999 9999 9
Q ss_pred EEEEcCCCcccccchHH--HHhhhcCCCCCCCCCcccccccChHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Q psy3395 240 ILAVTPANSDLANSDAL--KLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQKQLLTLEKDV 317 (775)
Q Consensus 240 ~~V~nrsq~d~~~~~~~--~~~~E~~fF~~~p~~~~~~~r~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL 317 (775)
++|+||+|+|++.++++ ++..|+.||.+||.|+++++++|+++|.+.|+..|..||++++|.|+.+|+..+.+.+++|
T Consensus 234 v~vvnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el 313 (657)
T KOG0446|consen 234 VGVVNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDEL 313 (657)
T ss_pred eeeeccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCcccCcccccchhhhhHHhhhccccccccccCchHHhHHHHHH
Q psy3395 318 EQFKHFRPDDPSIKTKAMLQMIQQLQSDFERTIEGSGSAQINTMELSGGAKINRLFHERFPFEIVKMEFDEKELRREIAF 397 (775)
Q Consensus 318 ~~lg~~~~~~~~~~~~~Ll~~i~~f~~~f~~~I~G~~~~~~~~~el~ggarI~~iF~~~f~~~l~~~~~~~~~~~~eI~~ 397 (775)
..||. +++...+...++++++.|+..|...+.|..+... +.+++|||||+++|++.|+..+.++++++.....+|++
T Consensus 314 ~~~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~-~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~ 390 (657)
T KOG0446|consen 314 NRIGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVP-TKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEK 390 (657)
T ss_pred HHhcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccc-hhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHH
Confidence 99997 4445566789999999999999999999987445 88999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc--cCCCchhHHHHHHHHHHHHHHHHH
Q psy3395 398 AIRNIHGIRVGLFTPDMAFEAIVKKQISRLKEPALKCVDLVVAELSNVVRICTD--KMSRYPRLREETERIITSYVRNRE 475 (775)
Q Consensus 398 ~i~ns~G~~~~lF~P~~afe~Lvk~qi~~~~~pa~~cv~~V~~eL~~iv~~~~~--~~~rFP~L~~~i~~iv~~~L~e~~ 475 (775)
+++|++|+++++|.|+.+||.++++||+.+++||++||+.|+++|.+++++|.. ++.|||.|++++.+++.+++++++
T Consensus 391 ~i~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~~l~rfp~l~~~~~~~~~~~~~~~~ 470 (657)
T KOG0446|consen 391 LVSEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRATELKRFPVLYSELVEIASSLIAEGL 470 (657)
T ss_pred HHHhccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999987 699999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCChhhhhhhh-hhhhhhhhcccchhhccccCcccccccccccccccccCCCCCCcccccc
Q psy3395 476 QQCKEQIVLLVDCELAYMNTNHEDFIGFAN-VMFSAQQTTDNSNKAGRKLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLT 554 (775)
Q Consensus 476 ~~a~~~I~~Lid~E~~yInTnHpdFig~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 554 (775)
++++++|.++|+||.+||||+||||+++.. +|....... +.
T Consensus 471 ~~t~~~v~~~i~~e~~yinT~h~df~~~~~~al~~~~~~~--------------~~------------------------ 512 (657)
T KOG0446|consen 471 DETKKAVKNLIDLEQSYLNTDHPDFRSLTDSALSSVTSPS--------------IA------------------------ 512 (657)
T ss_pred hHHHHHHHHHHHHHHHHhcCcChhhhhhHHHHHHHhhccc--------------cc------------------------
Confidence 999999999999999999999999999885 442221110 00
Q ss_pred ccccccccchHHHHhhccCCcCCCccccccCCCCccccccccccCCCCcccchhhhhhccccccCCcchhhhhhhhcccC
Q psy3395 555 SENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVY 634 (775)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (775)
+..|+.+. . .. .+.+ ..++.++.++... |+. +. .
T Consensus 513 --~~~~~~~~-----~--~~--------~~~~-------------~~~~~~~~~~~~~-----------~~~---~~--~ 546 (657)
T KOG0446|consen 513 --AMKLISAQ-----L--LK--------EELG-------------ECNSALKAIKNAV-----------GSI---RL--D 546 (657)
T ss_pred --cccccccc-----c--cc--------cccc-------------cccchhhhhcchh-----------hhh---hh--c
Confidence 00010000 0 00 0000 0000111100000 000 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC
Q psy3395 635 PEKSTDQSNGDEGGTEGTSSMDPQLERQVETIRNLVDSYMKIVTKTCRDLVPKTIMLLIINNAKDFINGELLAHLYA-SG 713 (775)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~s~d~~~~~eve~Ir~Li~SYF~IVrKni~D~VPKaIm~~lVn~~k~~lq~eLv~~LY~-~~ 713 (775)
|+.. . -.....+++++..++++|++++.|||+||+|+|+|+|||+|||+|||.+|+.||++|+.+||+ ++
T Consensus 547 ~~~~---~------~~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~~~~ 617 (657)
T KOG0446|consen 547 PSDI---V------LSRALVLKKRECKETEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYAGDE 617 (657)
T ss_pred ccch---h------hhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 0000 0 001234567778899999999999999999999999999999999999999999999999999 99
Q ss_pred ChhHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3395 714 DQAAMMEESPEEALKREEMLRMYHACKEALRIIGDVSMA 752 (775)
Q Consensus 714 ~~~~LL~E~~~ia~rR~~~~~~l~aLk~A~~ii~ev~~~ 752 (775)
.++.||+|+|.++++|++|++|+++|++|+.+|..+...
T Consensus 618 ~~~~ll~E~~~i~~~R~~~~~~l~~L~~a~~ii~~~~~~ 656 (657)
T KOG0446|consen 618 QLESLLKEDPRIKRRRELQQKRLLALQKALSILATVAQA 656 (657)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999988654
No 2
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=8.6e-56 Score=476.81 Aligned_cols=283 Identities=33% Similarity=0.540 Sum_probs=248.4
Q ss_pred HHHHhhcccccccCCCeEEEEEcCCCcccccchHH--HHhhhcCCCCCCCCCcccccccChHHHHHHHHHHHHHHHhhhc
Q psy3395 222 EYQIKSMILQFIKRDNCLILAVTPANSDLANSDAL--KLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTL 299 (775)
Q Consensus 222 ~~~l~~~~~~~l~~G~~~~~V~nrsq~d~~~~~~~--~~~~E~~fF~~~p~~~~~~~r~G~~~L~~~L~~~L~~~i~~~l 299 (775)
.++|+|+.+| |++| ||+|+||||+|+..+.++ +++.|++||++||+|+..+++||+++|+.+|+++|.+||+++|
T Consensus 2 ~~iL~n~~~p-LklG--y~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~L 78 (295)
T PF01031_consen 2 MDILRNKVIP-LKLG--YVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSL 78 (295)
T ss_dssp HHHHTTSSS---TT---EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCeec-cCCC--eEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhC
Confidence 5899999999 9999 999999999999887766 8889999999999999988999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCcccCcccccchhhhhHHhhhcccc
Q psy3395 300 PGLRDRLQKQLLTLEKDVEQFKHFRPDDPSIKTKAMLQMIQQLQSDFERTIEGSGSAQINTMELSGGAKINRLFHERFPF 379 (775)
Q Consensus 300 P~l~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~Ll~~i~~f~~~f~~~I~G~~~~~~~~~el~ggarI~~iF~~~f~~ 379 (775)
|.|+.+|++.|.+++.+|+.||++++.++.+++.+|++++++|++.|+++|+|.+.+.+.+.++.||+||+++|++.|..
T Consensus 79 P~l~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~ 158 (295)
T PF01031_consen 79 PSLKSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDK 158 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhh
Confidence 99999999999999999999999998788899999999999999999999999998557889999999999999999999
Q ss_pred ccccccCchHHhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc-cCCCchh
Q psy3395 380 EIVKMEFDEKELRREIAFAIRNIHGIRVGLFTPDMAFEAIVKKQISRLKEPALKCVDLVVAELSNVVRICTD-KMSRYPR 458 (775)
Q Consensus 380 ~l~~~~~~~~~~~~eI~~~i~ns~G~~~~lF~P~~afe~Lvk~qi~~~~~pa~~cv~~V~~eL~~iv~~~~~-~~~rFP~ 458 (775)
.+.+++++...++++|+++|+|++|+++|+|+|+.+|+.|+++||++|++||++||+.|+++|.+++.+|.. +|.|||+
T Consensus 159 ~~~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~ 238 (295)
T PF01031_consen 159 FLEKIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPN 238 (295)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHH
T ss_pred hhhhhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchH
Confidence 998888999999999999999999999999999999999999999999999999999999999999999765 7999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhhhhhh
Q psy3395 459 LREETERIITSYVRNREQQCKEQIVLLVDCELAYMNTNHEDFIGFANVM 507 (775)
Q Consensus 459 L~~~i~~iv~~~L~e~~~~a~~~I~~Lid~E~~yInTnHpdFig~~~~~ 507 (775)
|++++.+++.++++++..+|.++|++||+||++||||+||||+++..++
T Consensus 239 L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T~~~~f~~~~~~~ 287 (295)
T PF01031_consen 239 LKEAIKEAVQQLLEECREPAKEMIENLIDMELSYINTQHPDFLGELQAI 287 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSTT--TTS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988754
No 3
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=1.5e-52 Score=434.62 Aligned_cols=239 Identities=70% Similarity=1.051 Sum_probs=229.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeec
Q psy3395 7 LEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLH 86 (775)
Q Consensus 7 m~~li~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~ 86 (775)
|+.|++++|++++..+++|++..+++|+|||||+||||||||||+|+|..|+|+++|+|||||++|+|++...+|+++++
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~ 80 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLH 80 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEe
Confidence 78999999999776559999989999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhh
Q psy3395 87 CKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFIT 166 (775)
Q Consensus 87 ~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~ 166 (775)
.+++.+.+|+++++.|+++++++.|.+++||+++|+|+|+||++|+|+||||||++..+.++|+.++.+++++|+..||+
T Consensus 81 ~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~ 160 (240)
T smart00053 81 CKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFIS 160 (240)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999888788888899999999999999
Q ss_pred ccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCChhcHHHHHhhcccccccCCCeEEEEEcCC
Q psy3395 167 KETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLILAVTPA 246 (775)
Q Consensus 167 ~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~~d~~~~l~~~~~~~l~~G~~~~~V~nrs 246 (775)
++++|||+|++|+.|+++++++++|+.+||.|.||+|| +||+|..++++++.++++|+.++ |++| ||+|+||+
T Consensus 161 ~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~V----iTK~D~~~~~~~~~~~~~~~~~~-l~~g--~~~v~nr~ 233 (240)
T smart00053 161 KEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGV----ITKLDLMDEGTDARDILENKLLP-LRRG--YIGVVNRS 233 (240)
T ss_pred CccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEE----EECCCCCCccHHHHHHHhCCccc-cCCC--EEEEECCC
Confidence 99999999999999999999999999999999999999 99999999999999999999999 9999 99999999
Q ss_pred Cccccc
Q psy3395 247 NSDLAN 252 (775)
Q Consensus 247 q~d~~~ 252 (775)
|+|++.
T Consensus 234 ~~d~~~ 239 (240)
T smart00053 234 QKDIEG 239 (240)
T ss_pred hHHhhc
Confidence 999864
No 4
>KOG0447|consensus
Probab=100.00 E-value=2.4e-34 Score=311.67 Aligned_cols=284 Identities=24% Similarity=0.349 Sum_probs=231.3
Q ss_pred hHHHHHHHHHHHHHHhcCC--CCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceee
Q psy3395 8 EQLIPIVNKLQDAFTQLGV--PMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEF 84 (775)
Q Consensus 8 ~~li~~~~~l~d~l~~~G~--~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~ 84 (775)
+.||+++..+-|.|+.-.. +..-.||++||||+|||||+||||.|....+||||+| +.||.|+.++|...|--.+.|
T Consensus 282 kSLIDMYSEVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqF 361 (980)
T KOG0447|consen 282 KSLIDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALF 361 (980)
T ss_pred HHHHHHHHHHHHHHhcccccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhh
Confidence 6799999999999986543 3456899999999999999999999999999999999 789999999998765332333
Q ss_pred ecc---CC-ccccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHH
Q psy3395 85 LHC---KG-KKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDM 160 (775)
Q Consensus 85 ~~~---~~-~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~l 160 (775)
-.. ++ .+.+|+.+++.+++-.+..-...++.+|+.+|.+.+.||+++.++||||||++..-+.|-..|-.+.|-.|
T Consensus 362 rDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~m 441 (980)
T KOG0447|consen 362 KDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSI 441 (980)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHH
Confidence 221 11 24568899999999887665555789999999999999999999999999999876667667777788999
Q ss_pred HHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCCh----hcHHHHHhhcccccccCC
Q psy3395 161 LFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQP----ADIEYQIKSMILQFIKRD 236 (775)
Q Consensus 161 v~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~----~d~~~~l~~~~~~~l~~G 236 (775)
.+.||+|||+||||+-.+..|...|.+-.++-++||.|.|||+| +||+|+.+.. .-+..+|+|++.|.=.+|
T Consensus 442 sKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfV----LTKVDlAEknlA~PdRI~kIleGKLFPMKALG 517 (980)
T KOG0447|consen 442 SKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFV----LTKVDLAEKNVASPSRIQQIIEGKLFPMKALG 517 (980)
T ss_pred HHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEE----EeecchhhhccCCHHHHHHHHhcCccchhhcc
Confidence 99999999999999999999999999999999999999999999 9999998752 235689999999944589
Q ss_pred CeEEEEEcC-CCcccccchHH--HHhhhcCCCCCCCCCcc---cccccChHHHHHHHHHHHHHHHhhhchh
Q psy3395 237 NCLILAVTP-ANSDLANSDAL--KLAKEVDPPGLHPSYRH---LADRLGTPYLQRVLNQQLTNHIRDTLPG 301 (775)
Q Consensus 237 ~~~~~V~nr-sq~d~~~~~~~--~~~~E~~fF~~~p~~~~---~~~r~G~~~L~~~L~~~L~~~i~~~lP~ 301 (775)
|++||+- +..+ .+| -++.|+.||.+..-++. .++.+-+.+|.-+.+.-++..+|+++-.
T Consensus 518 --YfaVVTGrGnss----dSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEq 582 (980)
T KOG0447|consen 518 --YFAVVTGKGNSS----ESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQ 582 (980)
T ss_pred --eeEEEecCCCcc----hhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHH
Confidence 9999973 3322 333 45678899987543322 1467788899888888888877765543
No 5
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.95 E-value=8e-28 Score=214.04 Aligned_cols=90 Identities=43% Similarity=0.626 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHhhcCCHHHHHHHHHHHHHHHHH
Q psy3395 660 ERQVETIRNLVDSYMKIVTKTCRDLVPKTIMLLIINNAKDFINGELLAHLYASGDQAAMMEESPEEALKREEMLRMYHAC 739 (775)
Q Consensus 660 ~~eve~Ir~Li~SYF~IVrKni~D~VPKaIm~~lVn~~k~~lq~eLv~~LY~~~~~~~LL~E~~~ia~rR~~~~~~l~aL 739 (775)
+.++++|++|+.|||+||+|+++|+|||+|||||||++++.||++|+++||+++.+++||+|||+|++||++|.+++++|
T Consensus 3 ~~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~~~~~~LL~E~~~i~~kR~~~~~~l~~L 82 (92)
T smart00302 3 DSELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEELLDELLEEDPEIASKRKELKKRLELL 82 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q psy3395 740 KEALRIIGDV 749 (775)
Q Consensus 740 k~A~~ii~ev 749 (775)
++|.++|++|
T Consensus 83 ~~A~~~l~~v 92 (92)
T smart00302 83 KKARQIIAAV 92 (92)
T ss_pred HHHHHHHhcC
Confidence 9999999986
No 6
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.92 E-value=3.9e-26 Score=197.55 Aligned_cols=110 Identities=81% Similarity=1.444 Sum_probs=106.8
Q ss_pred cccccccccccccccCCCCCCccccccccccccccchHHHHhhccCCcCCCccccccCCCCccccccccccCCCCcccch
Q psy3395 528 VIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKD 607 (775)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (775)
||++||+.++|.+.++||++.+||||+++++.||+|++++++++++|++|+++|+.+.|||++.+.|++|+++++|+||+
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvykd 80 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKD 80 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEecceeeeecccccccccceeeccccEEEeecccccCCCcEEEEEcCcccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCcchhhhhhhhcccCCCC
Q psy3395 608 YKQLELSCENQDDVDSWKASFLRAGVYPEK 637 (775)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (775)
+++++|+|++++++++|++||+||||||+.
T Consensus 81 ~k~lel~~~~~e~vdswkasflragvype~ 110 (110)
T cd01256 81 YKQLELGCETLEEVDSWKASFLRAGVYPEK 110 (110)
T ss_pred hheeeecCCCHHHHHHHHHHHHhccccCCC
Confidence 999999999999999999999999999973
No 7
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.88 E-value=1.9e-22 Score=179.96 Aligned_cols=92 Identities=37% Similarity=0.603 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHhhcCCHHHHHHHHHHHHHHH
Q psy3395 658 QLERQVETIRNLVDSYMKIVTKTCRDLVPKTIMLLIINNAKDFINGELLAHLYASGDQAAMMEESPEEALKREEMLRMYH 737 (775)
Q Consensus 658 ~~~~eve~Ir~Li~SYF~IVrKni~D~VPKaIm~~lVn~~k~~lq~eLv~~LY~~~~~~~LL~E~~~ia~rR~~~~~~l~ 737 (775)
|++.+++.|+.++.|||+||+|++.|+|||+|+||||+++++.|+.+|+.+||..+.+++||+|||+++++|++|.++++
T Consensus 1 ~e~~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~~~~~Ll~Ed~~i~~kR~~l~~~~~ 80 (92)
T PF02212_consen 1 REQREVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEEDLEELLQEDPEIAEKREELKKKLE 80 (92)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGCCCCT--GHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy3395 738 ACKEALRIIGDV 749 (775)
Q Consensus 738 aLk~A~~ii~ev 749 (775)
+|++|.++|++|
T Consensus 81 ~L~~A~~~L~~~ 92 (92)
T PF02212_consen 81 RLKKAQQILSEV 92 (92)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 999999999875
No 8
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.85 E-value=9.6e-21 Score=186.55 Aligned_cols=164 Identities=29% Similarity=0.451 Sum_probs=133.3
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccc----eeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEY----AEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~----~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
|+|+|.+|||||||||||+|.+++|.+.+.||++|++++..+.+... ..........+.++.++++.+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 79999999999999999999999999999999999999998765422 11122234566788999988887766665
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQI 190 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~l 190 (775)
+....++..++.+....+...+++|||+||+....... .+++.+|+ +...++++|++++.++.+++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~---------~~~~~~~~-~~~d~vi~V~~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH---------TEITEEYL-PKADVVIFVVDANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT---------SHHHHHHH-STTEEEEEEEETTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhh---------HHHHHHhh-ccCCEEEEEeccCcccchHHHHHH
Confidence 55667888889999999999999999999996532211 16899999 677788999999999999999999
Q ss_pred HHhcCCCCCcceeccCCCCccc
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKV 212 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~ 212 (775)
.+..++...|+++| +||+
T Consensus 151 ~~~~~~~~~~~i~V----~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFV----LNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEE----EE-G
T ss_pred HHHhcCCCCeEEEE----EcCC
Confidence 99999999999999 9985
No 9
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=99.70 E-value=1.9e-15 Score=176.02 Aligned_cols=537 Identities=23% Similarity=0.275 Sum_probs=379.3
Q ss_pred cceeeeccCCccccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHH
Q psy3395 80 EYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKD 159 (775)
Q Consensus 80 ~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~ 159 (775)
+|..|.+.......++.++..++...+....|.+.++...++.+.+..+....++.+|.||+...+...++.++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (546)
T COG0699 2 EEFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDEL 81 (546)
T ss_pred CcchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHH
Confidence 35566666667778999999999988888888889999999999999999999999999999999999999999877778
Q ss_pred HHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCChhcHHHHHhhcccccccCCCeE
Q psy3395 160 MLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCL 239 (775)
Q Consensus 160 lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~~d~~~~l~~~~~~~l~~G~~~ 239 (775)
+-..|+..++++|.....++.+.++......++..+| + .|+.+.++.+++.... +..| .
T Consensus 82 ~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~--------~~~~--~ 140 (546)
T COG0699 82 LDLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------V----PTKINFLNGGTNLTLI--------LGNG--D 140 (546)
T ss_pred HHhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------h----hHHHHHHhcCCceeee--------eccc--c
Confidence 9999999999999999999999999999999998887 6 7888777766543211 3445 8
Q ss_pred EEEEcCCCcccccchHH--HHhhhcCCCCCCCCCcccccccChHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Q psy3395 240 ILAVTPANSDLANSDAL--KLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQKQLLTLEKDV 317 (775)
Q Consensus 240 ~~V~nrsq~d~~~~~~~--~~~~E~~fF~~~p~~~~~~~r~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL 317 (775)
+.++|+.+.++...... +...+..+|..|+.|......++..++...+++.+..|++...|....+.......
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 215 (546)
T COG0699 141 VLVVDALETDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ----- 215 (546)
T ss_pred ccccCchhHHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc-----
Confidence 88888888887654333 66677889999999998888899999999999999999999988776665544432
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCcccCcccccchhhhhHHhhhccccccccccCchHHhHHHHHH
Q psy3395 318 EQFKHFRPDDPSIKTKAMLQMIQQLQSDFERTIEGSGSAQINTMELSGGAKINRLFHERFPFEIVKMEFDEKELRREIAF 397 (775)
Q Consensus 318 ~~lg~~~~~~~~~~~~~Ll~~i~~f~~~f~~~I~G~~~~~~~~~el~ggarI~~iF~~~f~~~l~~~~~~~~~~~~eI~~ 397 (775)
.++. ..++.....|...++...+|. ++... ...+..........+..
T Consensus 216 -~~~~----------~~~~~~~~~~~~~~~~~~~~~--------------~~~~~--------~~~~~~l~~~~~~~~~~ 262 (546)
T COG0699 216 -DLFE----------NEVLAVIQTLLKRLSELVRGA--------------RIRLN--------IILFSDLEEVSDSPVLL 262 (546)
T ss_pred -cccc----------hHHHHHHHHHHHHHHHHhccc--------------hhhhh--------hcccchHHHhhhhhhHH
Confidence 2211 144556667766666444443 22222 11122333344566677
Q ss_pred HHHHhcCCCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc--cCCCchhHHHHHHHHHHHHHHHHH
Q psy3395 398 AIRNIHGIRVGLFTPDMAFEAIVKKQISRLKEPALKCVDLVVAELSNVVRICTD--KMSRYPRLREETERIITSYVRNRE 475 (775)
Q Consensus 398 ~i~ns~G~~~~lF~P~~afe~Lvk~qi~~~~~pa~~cv~~V~~eL~~iv~~~~~--~~~rFP~L~~~i~~iv~~~L~e~~ 475 (775)
...++.|.++..|....++..++..++..+..++.+|+..+.+++.++...... ....||.+...+...+.+......
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (546)
T COG0699 263 KELASKGERPSLLSGLTLLDTLVETPIGQFDTQINQLLRKLISELVRILLKELESASSSPFPKLSEALEEVVNQLKNKVD 342 (546)
T ss_pred HHHcccCCCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHhh
Confidence 788888988889999999999999999999999999999999999988554433 368899999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCChhhhhhhhhhhhhhhhcccchhhccccCcccccccccccccccccCCCCCCccccccc
Q psy3395 476 QQCKEQIVLLVDCELAYMNTNHEDFIGFANVMFSAQQTTDNSNKAGRKLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTS 555 (775)
Q Consensus 476 ~~a~~~I~~Lid~E~~yInTnHpdFig~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~ 555 (775)
......+...++++..|++|.||.|.+...++.................+. ... + ..+.....
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~-~----~~~~~~~~---------- 405 (546)
T COG0699 343 SGLESGLLAIIDIEERYINTKHPLFLSLRQAAAILSKVLDNLEALLRSLDD--SRL-R----ELSDMGLN---------- 405 (546)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHhhcc--ccc-c----chhhcccc----------
Confidence 999999999999999999999999998877653332211000000000000 000 0 00000000
Q ss_pred cccccccchHHHHhhccCCcCCCccccccCCCCccccccccccCCCCcccchhhhhhccccccCCcchhhhhhhhcccCC
Q psy3395 556 ENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYP 635 (775)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (775)
+.. ......... .+.+... . |....... +....+ ....|.....
T Consensus 406 -~~~--~~~~~~~~~-------------~~~~~~~----~-~~~~~~~~-~~~~~~--------~~~~~~~~~~------ 449 (546)
T COG0699 406 -SLL--SNNLEEHLL-------------GSDFSLY----K-FLNEFLEL-KKLDAL--------LATLGEALRR------ 449 (546)
T ss_pred -hhH--HHHHHHHhh-------------cchhhHH----H-HHHHHhhh-ccchhh--------hccchHHHHH------
Confidence 000 000000000 0000000 0 00000000 000000 0000100000
Q ss_pred CCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Q psy3395 636 EKSTDQSNGDEGGTEGTSSMDPQLERQVETIRNLVDSYMKIVTKTCRDLVPKTIMLLIINNAKDFINGELLAHLYASGDQ 715 (775)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~s~d~~~~~eve~Ir~Li~SYF~IVrKni~D~VPKaIm~~lVn~~k~~lq~eLv~~LY~~~~~ 715 (775)
......+...-+.+.|+.++.+| .++...+.|.+++++++++.+..+...+......+|.....
T Consensus 450 ---------------~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (546)
T COG0699 450 ---------------LTGLLPERKTLEKQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLEQLE 513 (546)
T ss_pred ---------------hhcccchhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111222223455679999999 99999999999999999999999999999999999999999
Q ss_pred hHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy3395 716 AAMMEESPEEALKREEMLRMYHACKEALR 744 (775)
Q Consensus 716 ~~LL~E~~~ia~rR~~~~~~l~aLk~A~~ 744 (775)
++|..+.+.+.+.|..+.+.+.++.++..
T Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (546)
T COG0699 514 DELLRTAEEILELRLLLEQFLEALKLAAR 542 (546)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998865
No 10
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.25 E-value=2.8e-11 Score=120.92 Aligned_cols=127 Identities=24% Similarity=0.305 Sum_probs=89.1
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcc--cccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI--VTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETD 107 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~--~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 107 (775)
-++|+||++|..++||||+||+|+|..-|.|-+.+ .||.+-..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff----------------------------------- 66 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFF----------------------------------- 66 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEE-----------------------------------
Confidence 47999999999999999999999997766766653 34432111
Q ss_pred hhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCC--Cccch
Q psy3395 108 RITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANT--DLATS 185 (775)
Q Consensus 108 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~--d~~~s 185 (775)
++. ..+-||||||+....+ |....+.+.+++..|+....+|-++|.=.+. .+...
T Consensus 67 ----------------~~~----~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~ 123 (200)
T COG0218 67 ----------------EVD----DELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDL 123 (200)
T ss_pred ----------------Eec----CcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHH
Confidence 000 0166999999987654 4567789999999999997777666554333 33332
Q ss_pred HHHHHHHhcCCCCCcceeccCCCCcccCCCCChh
Q psy3395 186 DALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPA 219 (775)
Q Consensus 186 ~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~~ 219 (775)
| .++...+...|..++.| +||+|...++.
T Consensus 124 D-~em~~~l~~~~i~~~vv----~tK~DKi~~~~ 152 (200)
T COG0218 124 D-REMIEFLLELGIPVIVV----LTKADKLKKSE 152 (200)
T ss_pred H-HHHHHHHHHcCCCeEEE----EEccccCChhH
Confidence 2 24444444466788899 99999987654
No 11
>PRK09866 hypothetical protein; Provisional
Probab=99.17 E-value=9.3e-10 Score=126.25 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeecc
Q psy3395 7 LEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSM 78 (775)
Q Consensus 7 m~~li~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~ 78 (775)
.+.+-.-+.+|+..|..+-... |.++|||..|+|||||+++|+|...+|.+...+|.+|+.++.....
T Consensus 48 rR~i~~ri~~L~~~L~Kv~~~~----~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg~ 115 (741)
T PRK09866 48 QPNIAERHAMLNNELRKISRLE----MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQ 115 (741)
T ss_pred HHHHHHHHHHHHHHHHHHhccc----eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCCc
Confidence 4566677777777777664332 9999999999999999999999999999999999999977766543
No 12
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.83 E-value=2.8e-08 Score=99.30 Aligned_cols=125 Identities=21% Similarity=0.266 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcc--cccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI--VTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETD 107 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~--~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 107 (775)
-..|.|+++|..++||||++++|+|..|.+.-+.. +|+-+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 57 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLI-------------------------------------- 57 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEE--------------------------------------
Confidence 56889999999999999999999997654332211 22210
Q ss_pred hhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccc--cEEEEEecCCCCccch
Q psy3395 108 RITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKET--CLILAVTPANTDLATS 185 (775)
Q Consensus 108 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~--~iILaV~~a~~d~~~s 185 (775)
....+ + .++.++|+||+.... ++......+..++..|+.... +.++.|+.++..+..+
T Consensus 58 -------------~~~~~--~--~~~~liDtpG~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~ 117 (179)
T TIGR03598 58 -------------NFFEV--N--DGFRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKEL 117 (179)
T ss_pred -------------EEEEe--C--CcEEEEeCCCCcccc---CChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHH
Confidence 00111 1 268899999986532 233334567778888987642 3456667777666555
Q ss_pred HHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 186 DALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 186 ~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+. .+.+.++..+.+.++| +||+|+++.
T Consensus 118 ~~-~~~~~~~~~~~pviiv----~nK~D~~~~ 144 (179)
T TIGR03598 118 DL-EMLEWLRERGIPVLIV----LTKADKLKK 144 (179)
T ss_pred HH-HHHHHHHHcCCCEEEE----EECcccCCH
Confidence 54 3344445567788999 999999854
No 13
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.82 E-value=3.1e-08 Score=99.78 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcc--cccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI--VTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETD 107 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~--~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 107 (775)
=.+|.|+|||..++|||||+++|+|..|.+..++. |||.+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~------------------------------------- 64 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLIN------------------------------------- 64 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEE-------------------------------------
Confidence 47899999999999999999999997654443322 232110
Q ss_pred hhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhcccc--EEEEEecCCCCccch
Q psy3395 108 RITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETC--LILAVTPANTDLATS 185 (775)
Q Consensus 108 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~--iILaV~~a~~d~~~s 185 (775)
...+ ..+++|+|+||+.... .+.+..+....++..|+..... +++.|+++.......
T Consensus 65 --------------~~~~----~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~ 123 (196)
T PRK00454 65 --------------FFEV----NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKEL 123 (196)
T ss_pred --------------EEec----CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHH
Confidence 0000 1478999999975422 2344455667888899887643 344445554433322
Q ss_pred HHHHHHHhcCCCCCcceeccCCCCcccCCCCCh
Q psy3395 186 DALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQP 218 (775)
Q Consensus 186 ~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~ 218 (775)
+ ..+.+.+...+...+.| +||+|+.+.+
T Consensus 124 ~-~~i~~~l~~~~~~~iiv----~nK~Dl~~~~ 151 (196)
T PRK00454 124 D-LQMIEWLKEYGIPVLIV----LTKADKLKKG 151 (196)
T ss_pred H-HHHHHHHHHcCCcEEEE----EECcccCCHH
Confidence 2 12223333345667888 8999997643
No 14
>COG1159 Era GTPase [General function prediction only]
Probab=98.77 E-value=1.1e-07 Score=100.54 Aligned_cols=121 Identities=26% Similarity=0.425 Sum_probs=77.0
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHH-hhhcCCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAET-DRITGSN 113 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~-~~~~g~~ 113 (775)
+++||..++|||+|||+|+|... .++++.|- .| .++.|
T Consensus 9 VaIiGrPNvGKSTLlN~l~G~Ki-----sIvS~k~Q----------------------------------TTR~~I~G-- 47 (298)
T COG1159 9 VAIIGRPNVGKSTLLNALVGQKI-----SIVSPKPQ----------------------------------TTRNRIRG-- 47 (298)
T ss_pred EEEEcCCCCcHHHHHHHHhcCce-----EeecCCcc----------------------------------hhhhheeE--
Confidence 89999999999999999999987 45555440 01 11112
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--HHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--ALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~l~la 191 (775)
|..-+-.+.+|||+||+++.. ..+.+..-..+.+-++ .-.+||.|++|+..+..-| ++...
T Consensus 48 -----------I~t~~~~QiIfvDTPGih~pk-----~~l~~~m~~~a~~sl~-dvDlilfvvd~~~~~~~~d~~il~~l 110 (298)
T COG1159 48 -----------IVTTDNAQIIFVDTPGIHKPK-----HALGELMNKAARSALK-DVDLILFVVDADEGWGPGDEFILEQL 110 (298)
T ss_pred -----------EEEcCCceEEEEeCCCCCCcc-----hHHHHHHHHHHHHHhc-cCcEEEEEEeccccCCccHHHHHHHH
Confidence 112224578899999998731 1111122222333333 4568889999988776655 34445
Q ss_pred HhcCCCCCcceeccCCCCcccCCCCChhc
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGDQPAD 220 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~~~~d 220 (775)
+. ...+.+.+ ++|+|...+...
T Consensus 111 k~---~~~pvil~----iNKID~~~~~~~ 132 (298)
T COG1159 111 KK---TKTPVILV----VNKIDKVKPKTV 132 (298)
T ss_pred hh---cCCCeEEE----EEccccCCcHHH
Confidence 54 34578899 999999876553
No 15
>PRK00089 era GTPase Era; Reviewed
Probab=98.77 E-value=2.5e-07 Score=99.91 Aligned_cols=119 Identities=19% Similarity=0.322 Sum_probs=71.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc-ccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV-TRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~-TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
-|+|||..+||||||+++|+|..+...+.... ||..
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~------------------------------------------- 43 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHR------------------------------------------- 43 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCccccc-------------------------------------------
Confidence 38999999999999999999987532222111 1111
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~l 190 (775)
+. .+....-..++|+|+||+.... ..+.+.....+..++...+.++++ +++...+... ..+..
T Consensus 44 --------i~-~i~~~~~~qi~~iDTPG~~~~~-----~~l~~~~~~~~~~~~~~~D~il~v-vd~~~~~~~~~~~i~~~ 108 (292)
T PRK00089 44 --------IR-GIVTEDDAQIIFVDTPGIHKPK-----RALNRAMNKAAWSSLKDVDLVLFV-VDADEKIGPGDEFILEK 108 (292)
T ss_pred --------EE-EEEEcCCceEEEEECCCCCCch-----hHHHHHHHHHHHHHHhcCCEEEEE-EeCCCCCChhHHHHHHH
Confidence 00 0111122468999999986532 122333445566677777766655 4554433332 23444
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
++. .+.+.+.| +||+|+...
T Consensus 109 l~~---~~~pvilV----lNKiDl~~~ 128 (292)
T PRK00089 109 LKK---VKTPVILV----LNKIDLVKD 128 (292)
T ss_pred Hhh---cCCCEEEE----EECCcCCCC
Confidence 442 34678999 999999843
No 16
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.76 E-value=8.5e-08 Score=97.41 Aligned_cols=153 Identities=17% Similarity=0.225 Sum_probs=87.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCc--ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g--~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
+|++||..++||||++|+|+|...+..+.. .+|+-+..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~---------------------------------------- 41 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQK---------------------------------------- 41 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccce----------------------------------------
Confidence 699999999999999999999876544431 34442110
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--HHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--ALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~l~ 189 (775)
...++ +-..++|||+||+..... ...++...+...+......++ +||.|+++.. +...+ +++
T Consensus 42 ---------~~~~~---~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~~~~g~~-~illVi~~~~-~t~~d~~~l~ 105 (196)
T cd01852 42 ---------ESAVW---DGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSLSAPGPH-AFLLVVPLGR-FTEEEEQAVE 105 (196)
T ss_pred ---------eeEEE---CCeEEEEEECcCCCCccC--ChHHHHHHHHHHHHhcCCCCE-EEEEEEECCC-cCHHHHHHHH
Confidence 00111 123688999999986432 223333333322322233344 6667777766 55444 455
Q ss_pred HHHhc-CCC-CCcceeccCCCCcccCCCCChhcHHHHHhhcc---ccccc-CCCeEEEEEcCCC
Q psy3395 190 IAKQV-DPD-VLNLTLVDLPGMTKVPIGDQPADIEYQIKSMI---LQFIK-RDNCLILAVTPAN 247 (775)
Q Consensus 190 lar~~-DP~-g~RtigVdLPGlTK~D~~~~~~d~~~~l~~~~---~~~l~-~G~~~~~V~nrsq 247 (775)
..+++ .+. ..+++.| +|+.|..... ...+.+.+.- .+.++ -|.+|+..-|+..
T Consensus 106 ~l~~~fg~~~~~~~ivv----~T~~d~l~~~-~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~ 164 (196)
T cd01852 106 TLQELFGEKVLDHTIVL----FTRGDDLEGG-TLEDYLENSCEALKRLLEKCGGRYVAFNNKAK 164 (196)
T ss_pred HHHHHhChHhHhcEEEE----EECccccCCC-cHHHHHHhccHHHHHHHHHhCCeEEEEeCCCC
Confidence 55543 332 2578899 9999987643 2223322221 11122 2666888888764
No 17
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.76 E-value=7.8e-08 Score=88.95 Aligned_cols=114 Identities=25% Similarity=0.397 Sum_probs=67.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
+|+|+|..++|||||+++|+|......+.. .+|+.+..-...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~------------------------------------- 43 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFE------------------------------------- 43 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEE-------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeee-------------------------------------
Confidence 689999999999999999999754444443 566655210000
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccH-HHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDI-EQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIA 191 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di-~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~la 191 (775)
+ ....+.|+|+||+.... ..+. ...++ .+.+.+...+.+|+ |+.++. ....+...+.
T Consensus 44 ------------~---~~~~~~~vDtpG~~~~~----~~~~~~~~~~-~~~~~~~~~d~ii~-vv~~~~-~~~~~~~~~~ 101 (116)
T PF01926_consen 44 ------------Y---NNKKFILVDTPGINDGE----SQDNDGKEIR-KFLEQISKSDLIIY-VVDASN-PITEDDKNIL 101 (116)
T ss_dssp ------------E---TTEEEEEEESSSCSSSS----HHHHHHHHHH-HHHHHHCTESEEEE-EEETTS-HSHHHHHHHH
T ss_pred ------------e---ceeeEEEEeCCCCcccc----hhhHHHHHHH-HHHHHHHHCCEEEE-EEECCC-CCCHHHHHHH
Confidence 0 12245799999986521 1111 11233 35555555665544 555555 3333344555
Q ss_pred HhcCCCCCcceeccCCCCcc
Q psy3395 192 KQVDPDVLNLTLVDLPGMTK 211 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK 211 (775)
+++. .+.+.+.| +||
T Consensus 102 ~~l~-~~~~~i~v----~NK 116 (116)
T PF01926_consen 102 RELK-NKKPIILV----LNK 116 (116)
T ss_dssp HHHH-TTSEEEEE----EES
T ss_pred HHHh-cCCCEEEE----EcC
Confidence 5554 67888888 887
No 18
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.75 E-value=3.3e-07 Score=97.98 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=71.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
.|+|||..++|||||+++|+|..+-.++. ...||.++.-
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~---------------------------------------- 41 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISG---------------------------------------- 41 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEE----------------------------------------
Confidence 58999999999999999999987522222 1234432100
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc-hHHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT-SDALQIA 191 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~-s~~l~la 191 (775)
+.. .+-..++|+|+||+.... ..+.+.....+..++...+.+++ |++++..... ..++...
T Consensus 42 ----------i~~--~~~~qii~vDTPG~~~~~-----~~l~~~~~~~~~~~l~~aDvvl~-VvD~~~~~~~~~~i~~~l 103 (270)
T TIGR00436 42 ----------IHT--TGASQIIFIDTPGFHEKK-----HSLNRLMMKEARSAIGGVDLILF-VVDSDQWNGDGEFVLTKL 103 (270)
T ss_pred ----------EEE--cCCcEEEEEECcCCCCCc-----chHHHHHHHHHHHHHhhCCEEEE-EEECCCCCchHHHHHHHH
Confidence 000 111247899999987531 12223333445677777775555 5555543322 2334444
Q ss_pred HhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+. .+...+.| +||+|+.++
T Consensus 104 ~~---~~~p~ilV----~NK~Dl~~~ 122 (270)
T TIGR00436 104 QN---LKRPVVLT----RNKLDNKFK 122 (270)
T ss_pred Hh---cCCCEEEE----EECeeCCCH
Confidence 43 45678999 999999743
No 19
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.75 E-value=7.6e-07 Score=99.27 Aligned_cols=171 Identities=21% Similarity=0.294 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCCC-CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeec
Q psy3395 8 EQLIPIVNKLQDAFTQLGVPMQ-MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLH 86 (775)
Q Consensus 8 ~~li~~~~~l~d~l~~~G~~~~-i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~ 86 (775)
.+|-.+..+|-+.++....... -+=-.+|+||..++|||||||||+|.+- .|||-.|
T Consensus 192 ~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~----------------- 249 (454)
T COG0486 192 EKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIA----------------- 249 (454)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCC-----------------
Confidence 3344444444443433322221 1333599999999999999999999874 5666543
Q ss_pred cCCccccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHH-HHHHHHHh
Q psy3395 87 CKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQI-KDMLFQFI 165 (775)
Q Consensus 87 ~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i-~~lv~~yi 165 (775)
|. +.|+|.-.+.- +..++.|+||-|+... .|..+.+ =+-..+-+
T Consensus 250 ------------------------GT----TRDviee~i~i-~G~pv~l~DTAGiRet------~d~VE~iGIeRs~~~i 294 (454)
T COG0486 250 ------------------------GT----TRDVIEEDINL-NGIPVRLVDTAGIRET------DDVVERIGIERAKKAI 294 (454)
T ss_pred ------------------------CC----ccceEEEEEEE-CCEEEEEEecCCcccC------ccHHHHHHHHHHHHHH
Confidence 21 23334333322 2346889999999742 2222221 11233344
Q ss_pred hccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCChhcHHHHHhhcccccccCCCeEEEEEcC
Q psy3395 166 TKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLILAVTP 245 (775)
Q Consensus 166 ~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~~d~~~~l~~~~~~~l~~G~~~~~V~nr 245 (775)
++.+ +||.|..++..+...+-.-+. .-|.+.+++.| +||.|+..+.... .. . +..|..++.+..+
T Consensus 295 ~~AD-lvL~v~D~~~~~~~~d~~~~~--~~~~~~~~i~v----~NK~DL~~~~~~~------~~-~-~~~~~~~i~iSa~ 359 (454)
T COG0486 295 EEAD-LVLFVLDASQPLDKEDLALIE--LLPKKKPIIVV----LNKADLVSKIELE------SE-K-LANGDAIISISAK 359 (454)
T ss_pred HhCC-EEEEEEeCCCCCchhhHHHHH--hcccCCCEEEE----Eechhcccccccc------hh-h-ccCCCceEEEEec
Confidence 4444 778899988865555533332 34567889999 9999999764311 00 1 3344336666666
Q ss_pred CCccc
Q psy3395 246 ANSDL 250 (775)
Q Consensus 246 sq~d~ 250 (775)
....+
T Consensus 360 t~~Gl 364 (454)
T COG0486 360 TGEGL 364 (454)
T ss_pred CccCH
Confidence 55444
No 20
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.74 E-value=1.1e-07 Score=105.39 Aligned_cols=126 Identities=22% Similarity=0.332 Sum_probs=78.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
-..|+|++||..++||||||++|+|..+...+.-..|+-|+.
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~-------------------------------------- 228 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTT-------------------------------------- 228 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEE--------------------------------------
Confidence 467999999999999999999999987533333334543321
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH---
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--- 186 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--- 186 (775)
-.+.-|+...+.|+|+||+.+. -|.++.+.++... .++.+.+.+ |.|+.+.......+
T Consensus 229 -------------~~i~~~~~~~i~l~DT~G~~~~----l~~~lie~f~~tl-e~~~~ADli-l~VvD~s~~~~~~~~~~ 289 (351)
T TIGR03156 229 -------------RRLDLPDGGEVLLTDTVGFIRD----LPHELVAAFRATL-EEVREADLL-LHVVDASDPDREEQIEA 289 (351)
T ss_pred -------------EEEEeCCCceEEEEecCccccc----CCHHHHHHHHHHH-HHHHhCCEE-EEEEECCCCchHHHHHH
Confidence 1122233346889999998542 2444444565543 467777755 45555543322222
Q ss_pred HHHHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 187 ALQIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 187 ~l~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
...+.+++.-.+...+.| ++|+|+.+
T Consensus 290 ~~~~L~~l~~~~~piIlV----~NK~Dl~~ 315 (351)
T TIGR03156 290 VEKVLEELGAEDIPQLLV----YNKIDLLD 315 (351)
T ss_pred HHHHHHHhccCCCCEEEE----EEeecCCC
Confidence 234555554345678899 99999875
No 21
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.73 E-value=7.5e-08 Score=101.63 Aligned_cols=131 Identities=18% Similarity=0.201 Sum_probs=82.0
Q ss_pred CCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHH
Q psy3395 28 MQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAET 106 (775)
Q Consensus 28 ~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 106 (775)
..-.-.+|+|+|..++||||++|+|+|....+.+.. .+|+.+....
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~--------------------------------- 73 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVS--------------------------------- 73 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEE---------------------------------
Confidence 345667899999999999999999999876454432 2343322110
Q ss_pred hhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhc-cccEEEEEecCCC-Cccc
Q psy3395 107 DRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITK-ETCLILAVTPANT-DLAT 184 (775)
Q Consensus 107 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~-~~~iILaV~~a~~-d~~~ 184 (775)
.. .+...+++||+||+.....++ ...+.+.+.+.+|+++ .-.+||.|...+. .+..
T Consensus 74 ----------------~~---~~g~~i~vIDTPGl~~~~~~~---~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~ 131 (249)
T cd01853 74 ----------------GT---VDGFKLNIIDTPGLLESVMDQ---RVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDY 131 (249)
T ss_pred ----------------EE---ECCeEEEEEECCCcCcchhhH---HHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCH
Confidence 00 112357899999997542211 1334566678889874 3456777776553 3333
Q ss_pred h--HHHHHHHh-cCCC-CCcceeccCCCCcccCCCCC
Q psy3395 185 S--DALQIAKQ-VDPD-VLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 185 s--~~l~lar~-~DP~-g~RtigVdLPGlTK~D~~~~ 217 (775)
. .+++..++ +.+. -.+++.| +||.|...+
T Consensus 132 ~d~~llk~I~e~fG~~i~~~~ivV----~T~~d~~~p 164 (249)
T cd01853 132 LDLPLLRAITDSFGPSIWRNAIVV----LTHAASSPP 164 (249)
T ss_pred HHHHHHHHHHHHhChhhHhCEEEE----EeCCccCCC
Confidence 3 35555554 3221 2579999 999999854
No 22
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.69 E-value=2.8e-07 Score=99.25 Aligned_cols=140 Identities=18% Similarity=0.288 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccEEEEEeeccccceeeec
Q psy3395 8 EQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLINSMTEYAEFLH 86 (775)
Q Consensus 8 ~~li~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~~l~l~~~~~~~~~~~~ 86 (775)
..|++++.+|.+ .+.+..+|+|||..|+||||++|+|+|......+. -.+|..|+..
T Consensus 22 ~~l~~~l~~l~~--------~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~-------------- 79 (313)
T TIGR00991 22 TKLLELLGKLKE--------EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMV-------------- 79 (313)
T ss_pred HHHHHHHHhccc--------ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEE--------------
Confidence 445666666543 34778899999999999999999999986422211 1122222111
Q ss_pred cCCccccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhh
Q psy3395 87 CKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFIT 166 (775)
Q Consensus 87 ~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~ 166 (775)
...+ +...+++||+||+... ..+.+.+.+.+..|+.
T Consensus 80 -----------------------------------~~~~---~G~~l~VIDTPGL~d~------~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 80 -----------------------------------SRTR---AGFTLNIIDTPGLIEG------GYINDQAVNIIKRFLL 115 (313)
T ss_pred -----------------------------------EEEE---CCeEEEEEECCCCCch------HHHHHHHHHHHHHHhh
Confidence 0001 2236889999999753 2334455677788875
Q ss_pred c-cccEEEEEecCCC-Ccc--chHHHHHHHhc--CCCCCcceeccCCCCcccCCCCC
Q psy3395 167 K-ETCLILAVTPANT-DLA--TSDALQIAKQV--DPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 167 ~-~~~iILaV~~a~~-d~~--~s~~l~lar~~--DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
. .-.+||.|...+. .+. ...+++..+++ +.--.++|.| +|+.|..++
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVV----fTh~d~~~p 168 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVV----LTHAQFSPP 168 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEE----EECCccCCC
Confidence 4 3445666655432 222 23456655553 1123689999 999998853
No 23
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.68 E-value=7.3e-08 Score=93.22 Aligned_cols=122 Identities=19% Similarity=0.262 Sum_probs=78.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc--ccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV--TRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~--TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
+|+++|..++|||||+++|+|..+.+..++.. |+.+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~----------------------------------------- 39 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLIN----------------------------------------- 39 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEE-----------------------------------------
Confidence 48999999999999999999655666665532 22110
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhcccc--EEEEEecCCCCccchHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETC--LILAVTPANTDLATSDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~--iILaV~~a~~d~~~s~~l~ 189 (775)
.+.+. ..++++|+||+..... +.+..+.+..++..|+...+. .++.|+.+..... .....
T Consensus 40 ----------~~~~~----~~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~ 101 (170)
T cd01876 40 ----------FFNVN----DKFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPT-EIDLE 101 (170)
T ss_pred ----------EEEcc----CeEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCC-HhHHH
Confidence 01111 1789999999865433 444556778888999987654 3455655554332 22233
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCCh
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQP 218 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~~ 218 (775)
+++.++..+...+.| +||+|++..+
T Consensus 102 ~~~~l~~~~~~vi~v----~nK~D~~~~~ 126 (170)
T cd01876 102 MLDWLEELGIPFLVV----LTKADKLKKS 126 (170)
T ss_pred HHHHHHHcCCCEEEE----EEchhcCChH
Confidence 344444445677888 8999997544
No 24
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.65 E-value=1e-07 Score=93.26 Aligned_cols=116 Identities=22% Similarity=0.317 Sum_probs=69.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
+|++||..++|||||+|+|+|... ..++= ..|+-+.+-
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g---------------------------------------- 40 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEG---------------------------------------- 40 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEE----------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeE----------------------------------------
Confidence 699999999999999999999874 33321 222211111
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhh-ccccEEEEEecCCCCccchHHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFIT-KETCLILAVTPANTDLATSDALQIA 191 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~-~~~~iILaV~~a~~d~~~s~~l~la 191 (775)
.+++ .-..+.||||||+..... .. .+ +.+..+|+. ..-.+|+.|+.|+. + ..-+.++
T Consensus 41 ---------~~~~---~~~~~~lvDlPG~ysl~~--~s--~e---e~v~~~~l~~~~~D~ii~VvDa~~-l--~r~l~l~ 98 (156)
T PF02421_consen 41 ---------IFKL---GDQQVELVDLPGIYSLSS--KS--EE---ERVARDYLLSEKPDLIIVVVDATN-L--ERNLYLT 98 (156)
T ss_dssp ---------EEEE---TTEEEEEEE----SSSSS--SS--HH---HHHHHHHHHHTSSSEEEEEEEGGG-H--HHHHHHH
T ss_pred ---------EEEe---cCceEEEEECCCcccCCC--CC--cH---HHHHHHHHhhcCCCEEEEECCCCC-H--HHHHHHH
Confidence 1111 114678999999865421 11 11 235566663 44556677777754 2 3335555
Q ss_pred HhcCCCCCcceeccCCCCcccCCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.++--.|.+++.| +||+|...
T Consensus 99 ~ql~e~g~P~vvv----lN~~D~a~ 119 (156)
T PF02421_consen 99 LQLLELGIPVVVV----LNKMDEAE 119 (156)
T ss_dssp HHHHHTTSSEEEE----EETHHHHH
T ss_pred HHHHHcCCCEEEE----EeCHHHHH
Confidence 5555568899999 99999875
No 25
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.63 E-value=1.1e-07 Score=98.11 Aligned_cols=151 Identities=21% Similarity=0.259 Sum_probs=81.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCc--ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g--~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
+|+++|..+|||||+.|+|+|...++.+.+ .||+.....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~--------------------------------------- 42 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKY--------------------------------------- 42 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEE---------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCccccccee---------------------------------------
Confidence 699999999999999999999988776632 455532111
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--HHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--ALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~l~ 189 (775)
..++. -..+++||+||+..... .+.++...+.+.+......+++++ .|.+++ .+...+ +++
T Consensus 43 ----------~~~~~---g~~v~VIDTPGl~d~~~--~~~~~~~~i~~~l~~~~~g~ha~l-lVi~~~-r~t~~~~~~l~ 105 (212)
T PF04548_consen 43 ----------SGEVD---GRQVTVIDTPGLFDSDG--SDEEIIREIKRCLSLCSPGPHAFL-LVIPLG-RFTEEDREVLE 105 (212)
T ss_dssp ----------EEEET---TEEEEEEE--SSEETTE--EHHHHHHHHHHHHHHTTT-ESEEE-EEEETT-B-SHHHHHHHH
T ss_pred ----------eeeec---ceEEEEEeCCCCCCCcc--cHHHHHHHHHHHHHhccCCCeEEE-EEEecC-cchHHHHHHHH
Confidence 00111 24688999999965432 222333333332222233466655 556666 666544 455
Q ss_pred HHHh-cCCC-CCcceeccCCCCcccCCCCChhcHHHHHhhcc----cccc-cCCCeEEEEEcC
Q psy3395 190 IAKQ-VDPD-VLNLTLVDLPGMTKVPIGDQPADIEYQIKSMI----LQFI-KRDNCLILAVTP 245 (775)
Q Consensus 190 lar~-~DP~-g~RtigVdLPGlTK~D~~~~~~d~~~~l~~~~----~~~l-~~G~~~~~V~nr 245 (775)
..++ +.+. -.+|+.| +|..|...... ..+.+++.. ...+ +-|.+|++.-|+
T Consensus 106 ~l~~~FG~~~~k~~ivv----fT~~d~~~~~~-~~~~l~~~~~~~l~~li~~c~~R~~~f~n~ 163 (212)
T PF04548_consen 106 LLQEIFGEEIWKHTIVV----FTHADELEDDS-LEDYLKKESNEALQELIEKCGGRYHVFNNK 163 (212)
T ss_dssp HHHHHHCGGGGGGEEEE----EEEGGGGTTTT-HHHHHHHHHHHHHHHHHHHTTTCEEECCTT
T ss_pred HHHHHccHHHHhHhhHH----hhhcccccccc-HHHHHhccCchhHhHHhhhcCCEEEEEecc
Confidence 5554 4442 3689999 99998775433 333333111 1101 135558888777
No 26
>PRK11058 GTPase HflX; Provisional
Probab=98.62 E-value=3.8e-07 Score=103.46 Aligned_cols=126 Identities=24% Similarity=0.328 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
-.+|.|++||.+++|||||+++|+|..+...+.-..|+-|+.-
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~------------------------------------- 237 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLR------------------------------------- 237 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceE-------------------------------------
Confidence 4679999999999999999999999875321211234433211
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH---
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--- 186 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--- 186 (775)
.+.+ ++.-...|+|+||+.+. .|.++.+.++.. ..++...+.+ |.|++++......+
T Consensus 238 ------------~i~l--~~~~~~~l~DTaG~~r~----lp~~lve~f~~t-l~~~~~ADlI-L~VvDaS~~~~~e~l~~ 297 (426)
T PRK11058 238 ------------RIDV--ADVGETVLADTVGFIRH----LPHDLVAAFKAT-LQETRQATLL-LHVVDAADVRVQENIEA 297 (426)
T ss_pred ------------EEEe--CCCCeEEEEecCccccc----CCHHHHHHHHHH-HHHhhcCCEE-EEEEeCCCccHHHHHHH
Confidence 1111 22224679999998542 244444445553 4556666655 55555543321111
Q ss_pred HHHHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 187 ALQIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 187 ~l~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
...+.+++...+.+.+.| +||+|+.+
T Consensus 298 v~~iL~el~~~~~pvIiV----~NKiDL~~ 323 (426)
T PRK11058 298 VNTVLEEIDAHEIPTLLV----MNKIDMLD 323 (426)
T ss_pred HHHHHHHhccCCCCEEEE----EEcccCCC
Confidence 234455555456788999 99999874
No 27
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.61 E-value=4.7e-07 Score=92.20 Aligned_cols=127 Identities=21% Similarity=0.349 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
-..|.|+|+|..++||||||++|+|..+.+.+....|.-|.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~--------------------------------------- 79 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPT--------------------------------------- 79 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccce---------------------------------------
Confidence 44799999999999999999999998653333322232211
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch---H
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS---D 186 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s---~ 186 (775)
...+..++...++++|+||+.... +.......+..+ .++.+.+.+++ |..+....... .
T Consensus 80 ------------~~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~~-~~~~~~d~ii~-v~D~~~~~~~~~~~~ 141 (204)
T cd01878 80 ------------TRRLRLPDGREVLLTDTVGFIRDL----PHQLVEAFRSTL-EEVAEADLLLH-VVDASDPDYEEQIET 141 (204)
T ss_pred ------------eEEEEecCCceEEEeCCCccccCC----CHHHHHHHHHHH-HHHhcCCeEEE-EEECCCCChhhHHHH
Confidence 001111222268899999985421 222223344443 33455665555 44454332222 2
Q ss_pred HHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 187 ALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 187 ~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
...+.+.+...+.+.++| +||.|+.+.
T Consensus 142 ~~~~l~~~~~~~~~viiV----~NK~Dl~~~ 168 (204)
T cd01878 142 VEKVLKELGAEDIPMILV----LNKIDLLDD 168 (204)
T ss_pred HHHHHHHcCcCCCCEEEE----EEccccCCh
Confidence 345556665556788999 999999764
No 28
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.60 E-value=4.7e-07 Score=87.24 Aligned_cols=120 Identities=20% Similarity=0.363 Sum_probs=71.1
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcc-cccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~-~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
..|+++|..+|||||++++|+|..+.+..... +|+.+
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~------------------------------------------ 41 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR------------------------------------------ 41 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece------------------------------------------
Confidence 56999999999999999999998652222111 11100
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc--hHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT--SDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~--s~~l~ 189 (775)
+. .+......++.++|+||+...... ....+..+...++...+.+++++...+. ... ....+
T Consensus 42 ---------~~-~~~~~~~~~~~liDtpG~~~~~~~-----~~~~~~~~~~~~~~~~d~i~~v~d~~~~-~~~~~~~~~~ 105 (168)
T cd04163 42 ---------IR-GIYTDDDAQIIFVDTPGIHKPKKK-----LGERMVKAAWSALKDVDLVLFVVDASEP-IGEGDEFILE 105 (168)
T ss_pred ---------EE-EEEEcCCeEEEEEECCCCCcchHH-----HHHHHHHHHHHHHHhCCEEEEEEECCCc-cCchHHHHHH
Confidence 00 011111246889999998653211 1122445667778888877776555443 222 22333
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+.. .+...+.| +||.|+...
T Consensus 106 ~~~~---~~~~~iiv----~nK~Dl~~~ 126 (168)
T cd04163 106 LLKK---SKTPVILV----LNKIDLVKD 126 (168)
T ss_pred HHHH---hCCCEEEE----EEchhcccc
Confidence 3333 34567889 999999843
No 29
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.60 E-value=3.4e-06 Score=96.30 Aligned_cols=144 Identities=21% Similarity=0.255 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCcccc-CcccccccEEEEEeeccccceeeeccC
Q psy3395 10 LIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRG-SGIVTRRPLVLQLINSMTEYAEFLHCK 88 (775)
Q Consensus 10 li~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~-~g~~TR~p~~l~l~~~~~~~~~~~~~~ 88 (775)
|-.+.++|.+.+........-+-++||+||..++|||||+++|+|..+-..+ ....||-+.+
T Consensus 181 l~~~~~~l~~ll~~~~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~----------------- 243 (442)
T TIGR00450 181 LLSIIAELKDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVE----------------- 243 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEE-----------------
Confidence 3344444444444432222235578999999999999999999997531111 1112221110
Q ss_pred CccccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhcc
Q psy3395 89 GKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKE 168 (775)
Q Consensus 89 ~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~ 168 (775)
-.+.+. -..+.++|+||+.... ..++..--.....|+.+.
T Consensus 244 --------------------------------~~i~~~---g~~v~l~DTaG~~~~~-----~~ie~~gi~~~~~~~~~a 283 (442)
T TIGR00450 244 --------------------------------GDFELN---GILIKLLDTAGIREHA-----DFVERLGIEKSFKAIKQA 283 (442)
T ss_pred --------------------------------EEEEEC---CEEEEEeeCCCcccch-----hHHHHHHHHHHHHHHhhC
Confidence 011121 1246799999985421 112211112456788877
Q ss_pred ccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 169 TCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 169 ~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+.+|++ .+++......+. ....+...+...+.| +||.|+.+.
T Consensus 284 D~il~V-~D~s~~~s~~~~--~l~~~~~~~~piIlV----~NK~Dl~~~ 325 (442)
T TIGR00450 284 DLVIYV-LDASQPLTKDDF--LIIDLNKSKKPFILV----LNKIDLKIN 325 (442)
T ss_pred CEEEEE-EECCCCCChhHH--HHHHHhhCCCCEEEE----EECccCCCc
Confidence 766555 445443332232 333333345678899 999999654
No 30
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.57 E-value=3.9e-07 Score=88.99 Aligned_cols=116 Identities=20% Similarity=0.300 Sum_probs=68.9
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
|.|+|+|..++||||++++|++..|.......+|+-. .
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~-----~------------------------------------- 38 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI-----G------------------------------------- 38 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEee-----c-------------------------------------
Confidence 7899999999999999999998776332222223210 0
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-cchHHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-ATSDALQIA 191 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-~~s~~l~la 191 (775)
...+....+...+++++|+||... ...+...++...+++++++-....+. .....+..+
T Consensus 39 -------~~~~~~~~~~~~~~~iiDtpG~~~-------------~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~ 98 (168)
T cd01887 39 -------AFEVPAEVLKIPGITFIDTPGHEA-------------FTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLA 98 (168)
T ss_pred -------cEEEecccCCcceEEEEeCCCcHH-------------HHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHH
Confidence 000011102345789999999521 23455666666776655554433221 122334444
Q ss_pred HhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+. .+.+.+.| +||+|+.+.
T Consensus 99 ~~---~~~p~ivv----~NK~Dl~~~ 117 (168)
T cd01887 99 KA---ANVPFIVA----LNKIDKPNA 117 (168)
T ss_pred HH---cCCCEEEE----EEceecccc
Confidence 44 45678888 999998743
No 31
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.48 E-value=1.8e-06 Score=92.24 Aligned_cols=144 Identities=22% Similarity=0.394 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccc
Q psy3395 13 IVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKF 92 (775)
Q Consensus 13 ~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~ 92 (775)
.+++.++.|+.+-. .+.++|.|||+|-.|+||||||.+|++.+ |-=. +|
T Consensus 150 fL~~~r~~l~~LP~-Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA-----------------~Y----------- 198 (346)
T COG1084 150 FLRKARDHLKKLPA-IDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVA-----------------PY----------- 198 (346)
T ss_pred HHHHHHHHHhcCCC-CCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccC-----------------CC-----------
Confidence 34444444455432 35789999999999999999999999976 2110 00
Q ss_pred cChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEE
Q psy3395 93 VDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLI 172 (775)
Q Consensus 93 ~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iI 172 (775)
-|+-.-|.+=.+--......+|||||+-.-|... -.+|| ...-.-+.+=..+|
T Consensus 199 ----------------------PFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~E-rN~IE----~qAi~AL~hl~~~I 251 (346)
T COG1084 199 ----------------------PFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEE-RNEIE----RQAILALRHLAGVI 251 (346)
T ss_pred ----------------------CccccceeEeeeecCCceEEEecCCcccCCChHH-hcHHH----HHHHHHHHHhcCeE
Confidence 1111223332333334467799999997655532 22343 33333344556778
Q ss_pred EEEecCCCC--ccchHHHHHHHhcCCCC-CcceeccCCCCcccCCCCCh
Q psy3395 173 LAVTPANTD--LATSDALQIAKQVDPDV-LNLTLVDLPGMTKVPIGDQP 218 (775)
Q Consensus 173 LaV~~a~~d--~~~s~~l~lar~~DP~g-~RtigVdLPGlTK~D~~~~~ 218 (775)
|.+..+... +.-.+-..|.+++-+.- .+++.| ++|.|..+..
T Consensus 252 lF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V----~nK~D~~~~e 296 (346)
T COG1084 252 LFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVV----INKIDIADEE 296 (346)
T ss_pred EEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEE----Eecccccchh
Confidence 888866543 22222344444544433 478889 9999998653
No 32
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.47 E-value=2.2e-06 Score=81.32 Aligned_cols=76 Identities=12% Similarity=0.211 Sum_probs=45.2
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGM 209 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGl 209 (775)
..+++++|+||+.......+ ....+...++...+.+++++.+... ....... +.....-.+...+.| +
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~------~~~~~~~~~~~~~d~il~v~~~~~~-~~~~~~~-~~~~~~~~~~~~ivv----~ 111 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGR------EREELARRVLERADLILFVVDADLR-ADEEEEK-LLELLRERGKPVLLV----L 111 (163)
T ss_pred CCcEEEEECCCCCccccchh------hHHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHH-HHHHHHhcCCeEEEE----E
Confidence 56899999999876432211 1124566777878876665554443 3222221 222222235678888 9
Q ss_pred cccCCCCC
Q psy3395 210 TKVPIGDQ 217 (775)
Q Consensus 210 TK~D~~~~ 217 (775)
||.|+...
T Consensus 112 nK~D~~~~ 119 (163)
T cd00880 112 NKIDLLPE 119 (163)
T ss_pred EccccCCh
Confidence 99998864
No 33
>PRK04213 GTP-binding protein; Provisional
Probab=98.47 E-value=1.4e-06 Score=88.46 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
-..+.|+++|..++|||||+++|+|..|
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~ 34 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV 34 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4568999999999999999999999764
No 34
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.44 E-value=4.6e-06 Score=81.16 Aligned_cols=126 Identities=21% Similarity=0.254 Sum_probs=69.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcc-cccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~-~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
.++|+++|..++||||++++|+|..+.+.+.-. +|+-..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 41 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSI---------------------------------------- 41 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCce----------------------------------------
Confidence 578999999999999999999997643322211 111000
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQI 190 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~l 190 (775)
...+... ..+++++|+||+...... ...++.....-...++...+.+|++ ..++...... .+.+
T Consensus 42 ---------~~~~~~~---~~~~~iiDtpG~~~~~~~--~~~~e~~~~~~~~~~~~~~d~vi~v-~d~~~~~~~~-~~~~ 105 (174)
T cd01895 42 ---------DVPFEYD---GKKYTLIDTAGIRRKGKV--EEGIEKYSVLRTLKAIERADVVLLV-IDATEGITEQ-DLRI 105 (174)
T ss_pred ---------eeEEEEC---CeeEEEEECCCCccccch--hccHHHHHHHHHHHHHhhcCeEEEE-EeCCCCcchh-HHHH
Confidence 0011111 234689999998653111 1112211111123455566655554 4555444332 3334
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+.+.-.+...+.| +||+|+.+.
T Consensus 106 ~~~~~~~~~~~iiv----~nK~Dl~~~ 128 (174)
T cd01895 106 AGLILEEGKALVIV----VNKWDLVEK 128 (174)
T ss_pred HHHHHhcCCCEEEE----EeccccCCc
Confidence 44433345678888 999999865
No 35
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.42 E-value=2.3e-06 Score=83.74 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
|.|+++|.+++||||++++|+|..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999999764
No 36
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.42 E-value=1.5e-06 Score=88.58 Aligned_cols=25 Identities=40% Similarity=0.525 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..|+|+|..++|||||+++|+|..+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~ 26 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH 26 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC
Confidence 4699999999999999999999765
No 37
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.40 E-value=1.4e-06 Score=91.05 Aligned_cols=123 Identities=22% Similarity=0.276 Sum_probs=80.8
Q ss_pred CCeEE-EEcCCCCchHHHHHHhhCCCCcccc-CcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 32 LPQIA-VVGGQSAGKSSVLENFVGRDFLPRG-SGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 32 lP~Iv-VvG~qSsGKSSvLeal~G~~flPr~-~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
-|-++ ++|..++||||++|||.+-..-|+. -|.||+-++....
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~----------------------------------- 82 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRL----------------------------------- 82 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHh-----------------------------------
Confidence 45555 9999999999999999964444555 4667764321100
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCC-CccchHHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANT-DLATSDAL 188 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~-d~~~s~~l 188 (775)
+ -+.-+|+|.|+||+...-..| ...+.++..|+.+.+ ++|++.+|.. ++....
T Consensus 83 ~-----------------~~~~~l~lwDtPG~gdg~~~D------~~~r~~~~d~l~~~D-LvL~l~~~~draL~~d~-- 136 (296)
T COG3596 83 S-----------------YDGENLVLWDTPGLGDGKDKD------AEHRQLYRDYLPKLD-LVLWLIKADDRALGTDE-- 136 (296)
T ss_pred h-----------------ccccceEEecCCCcccchhhh------HHHHHHHHHHhhhcc-EEEEeccCCCccccCCH--
Confidence 0 123479999999986532222 356888999988776 8899998864 343332
Q ss_pred HHHHhc-CC-CCCcceeccCCCCcccCCCCChh
Q psy3395 189 QIAKQV-DP-DVLNLTLVDLPGMTKVPIGDQPA 219 (775)
Q Consensus 189 ~lar~~-DP-~g~RtigVdLPGlTK~D~~~~~~ 219 (775)
.+++.+ -+ .+.|++.| +|.+|...++.
T Consensus 137 ~f~~dVi~~~~~~~~i~~----VtQ~D~a~p~~ 165 (296)
T COG3596 137 DFLRDVIILGLDKRVLFV----VTQADRAEPGR 165 (296)
T ss_pred HHHHHHHHhccCceeEEE----Eehhhhhcccc
Confidence 122211 01 12799999 99999887763
No 38
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.40 E-value=2.2e-06 Score=83.97 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|++||..++|||||+++|+|...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~ 25 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP 25 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc
Confidence 489999999999999999998653
No 39
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.38 E-value=3.3e-06 Score=87.94 Aligned_cols=74 Identities=22% Similarity=0.282 Sum_probs=45.7
Q ss_pred EecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--HHHHHHhcCCCCCcce
Q psy3395 125 VYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--ALQIAKQVDPDVLNLT 202 (775)
Q Consensus 125 i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~l~lar~~DP~g~Rti 202 (775)
++...-..++|||+||..+ ..+.++.......-.+++.|++|...+..++ .+.+++. .|...+
T Consensus 78 ~~~~~~~~i~liDtpG~~~------------~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~---~~ip~i 142 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHER------------YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALA---LNIPVF 142 (224)
T ss_pred eeeeCCcEEEEEECCCcHH------------HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHH---cCCCEE
Confidence 3334455799999999532 3445555533223334556677776665543 3444444 566789
Q ss_pred eccCCCCcccCCCCC
Q psy3395 203 LVDLPGMTKVPIGDQ 217 (775)
Q Consensus 203 gVdLPGlTK~D~~~~ 217 (775)
.| +||+|+.++
T Consensus 143 vv----vNK~D~~~~ 153 (224)
T cd04165 143 VV----VTKIDLAPA 153 (224)
T ss_pred EE----EECccccCH
Confidence 99 999999754
No 40
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.37 E-value=2.7e-06 Score=94.78 Aligned_cols=117 Identities=22% Similarity=0.307 Sum_probs=76.5
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccc-cCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPR-GSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr-~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
|.|++||..++|||||.|.|+|...==+ +.-.+||
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTR-------------------------------------------- 39 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTR-------------------------------------------- 39 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCcc--------------------------------------------
Confidence 8999999999999999999999764101 1112333
Q ss_pred CCCcccccCeE--EEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--H
Q psy3395 112 SNKGISNVPIN--LRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--A 187 (775)
Q Consensus 112 ~~~~~s~~~i~--l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~ 187 (775)
|.+. .++.+ ...+||||+|+.... +..+.++++.....-|...++|| .|+.+...+...| +
T Consensus 40 -------Dr~y~~~~~~~---~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eADvil-fvVD~~~Git~~D~~i 104 (444)
T COG1160 40 -------DRIYGDAEWLG---REFILIDTGGLDDGD----EDELQELIREQALIAIEEADVIL-FVVDGREGITPADEEI 104 (444)
T ss_pred -------CCccceeEEcC---ceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCCEEE-EEEeCCCCCCHHHHHH
Confidence 2111 12222 137899999997532 34577888888888888888664 5566655444433 4
Q ss_pred HHHHHhcCCCCCcceeccCCCCcccCCC
Q psy3395 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIG 215 (775)
Q Consensus 188 l~lar~~DP~g~RtigVdLPGlTK~D~~ 215 (775)
.++.+ +.+..+++| ++|+|..
T Consensus 105 a~~Lr---~~~kpviLv----vNK~D~~ 125 (444)
T COG1160 105 AKILR---RSKKPVILV----VNKIDNL 125 (444)
T ss_pred HHHHH---hcCCCEEEE----EEcccCc
Confidence 44444 355677888 7888766
No 41
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.37 E-value=3.4e-05 Score=88.46 Aligned_cols=121 Identities=19% Similarity=0.246 Sum_probs=69.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
+-+.|++||..++|||||+++|+|..+...+. -..||-+++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~-------------------------------------- 255 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIE-------------------------------------- 255 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEE--------------------------------------
Confidence 34689999999999999999999976422211 111221100
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCccc-HHHHHHHHHHHHhhccccEEEEEecCCCCccchHHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPID-IEQQIKDMLFQFITKETCLILAVTPANTDLATSDAL 188 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~d-i~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l 188 (775)
..+.+. -..++|+|+||+.. +.+ ++..--.....|+.+.+.+++ |++++...... -.
T Consensus 256 -----------~~i~~~---g~~i~l~DT~G~~~------~~~~ie~~gi~~~~~~~~~aD~il~-VvD~s~~~s~~-~~ 313 (449)
T PRK05291 256 -----------EHINLD---GIPLRLIDTAGIRE------TDDEVEKIGIERSREAIEEADLVLL-VLDASEPLTEE-DD 313 (449)
T ss_pred -----------EEEEEC---CeEEEEEeCCCCCC------CccHHHHHHHHHHHHHHHhCCEEEE-EecCCCCCChh-HH
Confidence 111221 23578999999853 222 221111224567777776655 55554433222 23
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+... ..+...+.| +||+|+.+.
T Consensus 314 ~~l~~--~~~~piiiV----~NK~DL~~~ 336 (449)
T PRK05291 314 EILEE--LKDKPVIVV----LNKADLTGE 336 (449)
T ss_pred HHHHh--cCCCCcEEE----EEhhhcccc
Confidence 33333 335678899 999999753
No 42
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.36 E-value=2.7e-06 Score=95.51 Aligned_cols=122 Identities=17% Similarity=0.224 Sum_probs=70.8
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccC--cccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGS--GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~--g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
+..|++||..+|||||||++|++.. |.-+ -..||.|..-.+.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~---------------------------------- 202 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVR---------------------------------- 202 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEE----------------------------------
Confidence 4579999999999999999999975 3222 1356666433221
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCC----CCccc-
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPAN----TDLAT- 184 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~----~d~~~- 184 (775)
.++...++|+|+||+.+.+..+. ..-..++ +++...+.+++ |+.+. .+...
T Consensus 203 -----------------~~~~~~i~~vDtPGi~~~a~~~~-----~Lg~~~l-~~i~radvlL~-VVD~s~~~~~d~~e~ 258 (390)
T PRK12298 203 -----------------VDDERSFVVADIPGLIEGASEGA-----GLGIRFL-KHLERCRVLLH-LIDIAPIDGSDPVEN 258 (390)
T ss_pred -----------------eCCCcEEEEEeCCCccccccchh-----hHHHHHH-HHHHhCCEEEE-EeccCcccccChHHH
Confidence 11122478999999976432111 1122233 46666665554 44443 22211
Q ss_pred -hHHHHHHHhcCC--CCCcceeccCCCCcccCCCCC
Q psy3395 185 -SDALQIAKQVDP--DVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 185 -s~~l~lar~~DP--~g~RtigVdLPGlTK~D~~~~ 217 (775)
...++....+.+ .....+.| +||+|+.++
T Consensus 259 ~~~l~~eL~~~~~~L~~kP~IlV----lNKiDl~~~ 290 (390)
T PRK12298 259 ARIIINELEKYSPKLAEKPRWLV----FNKIDLLDE 290 (390)
T ss_pred HHHHHHHHHhhhhhhcCCCEEEE----EeCCccCCh
Confidence 223344444443 24567888 899998753
No 43
>PRK15494 era GTPase Era; Provisional
Probab=98.35 E-value=1.5e-05 Score=88.21 Aligned_cols=24 Identities=25% Similarity=0.715 Sum_probs=22.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|++||..++|||||+++|+|..+
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~ 77 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKL 77 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCce
Confidence 799999999999999999999875
No 44
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.33 E-value=8e-06 Score=89.96 Aligned_cols=123 Identities=19% Similarity=0.293 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCc--ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhh
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDR 108 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g--~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 108 (775)
-++.|++||-.+|||||||++|++.. |.-+. ..|+.|..-.+.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~--------------------------------- 201 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVR--------------------------------- 201 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEE---------------------------------
Confidence 36789999999999999999999864 33221 346655422111
Q ss_pred hcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCC-CC-ccch-
Q psy3395 109 ITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPAN-TD-LATS- 185 (775)
Q Consensus 109 ~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~-~d-~~~s- 185 (775)
+ ++...++++|+||+...+..+. .+.....+++...+.+|+ |++++ .+ +..-
T Consensus 202 ----------------~--~~~~~~~i~D~PGli~ga~~~~------gLg~~flrhie~a~vlI~-ViD~s~~~s~e~~~ 256 (335)
T PRK12299 202 ----------------V--DDYKSFVIADIPGLIEGASEGA------GLGHRFLKHIERTRLLLH-LVDIEAVDPVEDYK 256 (335)
T ss_pred ----------------e--CCCcEEEEEeCCCccCCCCccc------cHHHHHHHHhhhcCEEEE-EEcCCCCCCHHHHH
Confidence 1 1223578999999975332111 122334456666665555 44444 23 1111
Q ss_pred HHHHHHHhcCCC--CCcceeccCCCCcccCCCCC
Q psy3395 186 DALQIAKQVDPD--VLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 186 ~~l~lar~~DP~--g~RtigVdLPGlTK~D~~~~ 217 (775)
.+....+.++|. ....+.| +||+|+.+.
T Consensus 257 ~~~~EL~~~~~~L~~kp~IIV----~NKiDL~~~ 286 (335)
T PRK12299 257 TIRNELEKYSPELADKPRILV----LNKIDLLDE 286 (335)
T ss_pred HHHHHHHHhhhhcccCCeEEE----EECcccCCc
Confidence 133444555652 4567788 899998654
No 45
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.32 E-value=6.5e-06 Score=79.82 Aligned_cols=116 Identities=16% Similarity=0.277 Sum_probs=68.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+++|..++|||||+++++|..|.+......|+-...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 39 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLS------------------------------------------ 39 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEE------------------------------------------
Confidence 58999999999999999999988743222222211100
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch-HHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS-DALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s-~~l~la 191 (775)
-.+.+.+ ....+.++|+||.. ..+.++..|+...+++|+++...+.. +... ..+...
T Consensus 40 -------~~~~~~~-~~~~l~~~D~~G~~-------------~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~ 98 (161)
T cd01861 40 -------KTMYLED-KTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDV 98 (161)
T ss_pred -------EEEEECC-EEEEEEEEECCCcH-------------HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 0111111 11257899999932 23567888998888776665443211 2111 123333
Q ss_pred HhcCCCCCcceeccCCCCcccCCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+..-+.+...+.| +||.|+.+
T Consensus 99 ~~~~~~~~~iilv----~nK~D~~~ 119 (161)
T cd01861 99 RDERGNDVIIVLV----GNKTDLSD 119 (161)
T ss_pred HHhCCCCCEEEEE----EEChhccc
Confidence 3222335678888 89999854
No 46
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.31 E-value=6.6e-06 Score=88.34 Aligned_cols=136 Identities=21% Similarity=0.286 Sum_probs=73.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc-cccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT-RRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T-R~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
.|+|||..++||||++++|.|..+.+....... .-+ .
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~---------------------------------------~--- 43 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEH---------------------------------------I--- 43 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccc---------------------------------------c---
Confidence 599999999999999999999887544321110 000 0
Q ss_pred CCcccccCeEEEEecC-CCcceEEEeCCCCCccCC-CCCcccHHHHHHHHHHHHhhc--------------cccEEEEEe
Q psy3395 113 NKGISNVPINLRVYSP-NVLNITLIDLPGLTKVPV-GDQPIDIEQQIKDMLFQFITK--------------ETCLILAVT 176 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p-~~~~LtlvDlPG~~~~~~-~~q~~di~~~i~~lv~~yi~~--------------~~~iILaV~ 176 (775)
....+-......+... ....|++||+||+...-. ..+-..+..-+.+....|+.. .+++++.+.
T Consensus 44 ~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~ 123 (276)
T cd01850 44 DKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIE 123 (276)
T ss_pred CCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEe
Confidence 0000001111122111 224799999999965321 122223333333333444421 233444444
Q ss_pred cCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 177 PANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 177 ~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+....+...| +.+++.+.. +...+.| +||+|+..+
T Consensus 124 ~~~~~l~~~D-~~~lk~l~~-~v~vi~V----inK~D~l~~ 158 (276)
T cd01850 124 PTGHGLKPLD-IEFMKRLSK-RVNIIPV----IAKADTLTP 158 (276)
T ss_pred CCCCCCCHHH-HHHHHHHhc-cCCEEEE----EECCCcCCH
Confidence 4444565555 455555543 5678899 999999863
No 47
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.30 E-value=7.8e-06 Score=94.39 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=75.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCcccc-CcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRG-SGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDR 108 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~-~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 108 (775)
-.+|.|++||..++|||||+++|+|..+...+ ...+||-
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d---------------------------------------- 75 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRD---------------------------------------- 75 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEe----------------------------------------
Confidence 45799999999999999999999997541111 1112221
Q ss_pred hcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc--hH
Q psy3395 109 ITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT--SD 186 (775)
Q Consensus 109 ~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~--s~ 186 (775)
.+...+... -..+.|+|+||+... ...+...+...+..|+...+.+|++| .+...... ..
T Consensus 76 -----------~~~~~~~~~-~~~~~l~DT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~il~Vv-D~~~~~s~~~~~ 137 (472)
T PRK03003 76 -----------RVSYDAEWN-GRRFTVVDTGGWEPD-----AKGLQASVAEQAEVAMRTADAVLFVV-DATVGATATDEA 137 (472)
T ss_pred -----------eEEEEEEEC-CcEEEEEeCCCcCCc-----chhHHHHHHHHHHHHHHhCCEEEEEE-ECCCCCCHHHHH
Confidence 111111111 124789999997531 22355677778888999888665554 44433322 23
Q ss_pred HHHHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 187 ALQIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 187 ~l~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
....++ ..+...++| ++|+|+..
T Consensus 138 i~~~l~---~~~~piilV----~NK~Dl~~ 160 (472)
T PRK03003 138 VARVLR---RSGKPVILA----ANKVDDER 160 (472)
T ss_pred HHHHHH---HcCCCEEEE----EECccCCc
Confidence 344444 356788999 99999864
No 48
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.30 E-value=8e-06 Score=78.26 Aligned_cols=119 Identities=24% Similarity=0.314 Sum_probs=67.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc-cccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~-~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
.|+++|..++||||++++|+|..+...+.-. +|+.
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~-------------------------------------------- 38 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRD-------------------------------------------- 38 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccc--------------------------------------------
Confidence 6999999999999999999997642222211 1110
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAK 192 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar 192 (775)
.....+. .....++++|+||+..... .....--..+..++.+.+.+++ |.++.......+ .++.+
T Consensus 39 -------~~~~~~~-~~~~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~-v~d~~~~~~~~~-~~~~~ 103 (157)
T cd04164 39 -------VIEESID-IGGIPVRLIDTAGIRETED-----EIEKIGIERAREAIEEADLVLF-VIDASRGLDEED-LEILE 103 (157)
T ss_pred -------eEEEEEE-eCCEEEEEEECCCcCCCcc-----hHHHHHHHHHHHHHhhCCEEEE-EEECCCCCCHHH-HHHHH
Confidence 0000111 1123688999999864321 1211112234456666775555 555554333333 23333
Q ss_pred hcCCCCCcceeccCCCCcccCCCCC
Q psy3395 193 QVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 193 ~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
. ..+.+.+.| +||.|+.+.
T Consensus 104 ~--~~~~~vi~v----~nK~D~~~~ 122 (157)
T cd04164 104 L--PADKPIIVV----LNKSDLLPD 122 (157)
T ss_pred h--hcCCCEEEE----EEchhcCCc
Confidence 2 235788999 999999864
No 49
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.29 E-value=1e-05 Score=77.13 Aligned_cols=115 Identities=18% Similarity=0.265 Sum_probs=69.3
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
.+|+|||.+++||||++++|.+..+.+...- |-.+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~--t~~~------------------------------------------- 35 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKS--TIGV------------------------------------------- 35 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCC--ceee-------------------------------------------
Confidence 3699999999999999999999886332110 1000
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH---HHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD---ALQ 189 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~---~l~ 189 (775)
......+.+. ....+++++|+||.. ....+...++++.+++|+++...+.+ .... .+.
T Consensus 36 ----~~~~~~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~ 96 (159)
T cd00154 36 ----DFKSKTIEID-GKTVKLQIWDTAGQE-------------RFRSITPSYYRGAHGAILVYDITNRE-SFENLDKWLK 96 (159)
T ss_pred ----eeEEEEEEEC-CEEEEEEEEecCChH-------------HHHHHHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHH
Confidence 0000111111 122467899999952 34457788888888777766654321 1112 333
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIG 215 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~ 215 (775)
........+..++.| +||.|+.
T Consensus 97 ~~~~~~~~~~p~ivv----~nK~D~~ 118 (159)
T cd00154 97 ELKEYAPENIPIILV----GNKIDLE 118 (159)
T ss_pred HHHHhCCCCCcEEEE----EEccccc
Confidence 344333235678888 8999996
No 50
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.28 E-value=8.5e-06 Score=93.02 Aligned_cols=120 Identities=23% Similarity=0.283 Sum_probs=76.4
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
+|.|++||..++|||||+++|+|..+-..+. ..+||-...
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~--------------------------------------- 41 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIY--------------------------------------- 41 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceE---------------------------------------
Confidence 4889999999999999999999876311111 122321110
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DAL 188 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l 188 (775)
-.+++.+ ..+.|+|+||+... ..++...++..+..++...+.+|++|. +...+... ...
T Consensus 42 ----------~~~~~~~---~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~vvd-~~~~~~~~~~~~~ 102 (435)
T PRK00093 42 ----------GEAEWLG---REFILIDTGGIEPD-----DDGFEKQIREQAELAIEEADVILFVVD-GRAGLTPADEEIA 102 (435)
T ss_pred ----------EEEEECC---cEEEEEECCCCCCc-----chhHHHHHHHHHHHHHHhCCEEEEEEE-CCCCCCHHHHHHH
Confidence 0112211 46889999998651 123556677788888888887666554 44433332 344
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
..+++. +...+.| ++|+|+.+
T Consensus 103 ~~l~~~---~~piilv----~NK~D~~~ 123 (435)
T PRK00093 103 KILRKS---NKPVILV----VNKVDGPD 123 (435)
T ss_pred HHHHHc---CCcEEEE----EECccCcc
Confidence 555553 6788999 99999654
No 51
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.28 E-value=4.8e-06 Score=79.93 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=45.6
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~l~lar~~DP~g~RtigVdLPG 208 (775)
..+.++|+||+..... ...+.+.+....++...+.+++++ .+.... .+....+.+++ .+...++|
T Consensus 45 ~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~d~ii~v~-d~~~~~~~~~~~~~~~~~~---~~~piiiv---- 111 (157)
T cd01894 45 REFILIDTGGIEPDDE-----GISKEIREQAELAIEEADVILFVV-DGREGLTPADEEIAKYLRK---SKKPVILV---- 111 (157)
T ss_pred eEEEEEECCCCCCchh-----HHHHHHHHHHHHHHHhCCEEEEEE-eccccCCccHHHHHHHHHh---cCCCEEEE----
Confidence 4688999999865321 233344455566777777665554 444332 22334555554 35788999
Q ss_pred CcccCCCCC
Q psy3395 209 MTKVPIGDQ 217 (775)
Q Consensus 209 lTK~D~~~~ 217 (775)
+||+|+.+.
T Consensus 112 ~nK~D~~~~ 120 (157)
T cd01894 112 VNKVDNIKE 120 (157)
T ss_pred EECcccCCh
Confidence 999999764
No 52
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.27 E-value=9.8e-06 Score=79.10 Aligned_cols=117 Identities=13% Similarity=0.203 Sum_probs=72.2
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
..|+|||..++||||+++++++..|.+...-.++...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~------------------------------------------- 40 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEF------------------------------------------- 40 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEE-------------------------------------------
Confidence 5799999999999999999999886332221111100
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~l~l 190 (775)
....+.+.+ ....+.++|+||.. ....+...|+.+..++|+++...+.+- .-...+..
T Consensus 41 ------~~~~~~~~~-~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~ 100 (165)
T cd01868 41 ------ATRSIQIDG-KTIKAQIWDTAGQE-------------RYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKE 100 (165)
T ss_pred ------EEEEEEECC-EEEEEEEEeCCChH-------------HHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHH
Confidence 001111111 12357899999942 245577788888887777765543211 11123455
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+++..+.+...+.| .||.|+.+
T Consensus 101 ~~~~~~~~~pi~vv----~nK~Dl~~ 122 (165)
T cd01868 101 LRDHADSNIVIMLV----GNKSDLRH 122 (165)
T ss_pred HHHhCCCCCeEEEE----EECccccc
Confidence 55555666777888 89999864
No 53
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.27 E-value=7.3e-06 Score=80.50 Aligned_cols=118 Identities=14% Similarity=0.206 Sum_probs=71.0
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
..+|+|||..++||||+++++++..|-+.-. .+.+.+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~------------------------------------------ 40 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDF------------------------------------------ 40 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceE------------------------------------------
Confidence 3689999999999999999999987622100 000000
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDAL 188 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~l 188 (775)
....+.+.+ ....+.|.|+||.. ....+...|+++.+++|++....+.+- ...+.+
T Consensus 41 --------~~~~~~~~~-~~~~l~l~D~~g~~-------------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~ 98 (167)
T cd01867 41 --------KIRTIELDG-KKIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIILVYDITDEKSFENIRNWM 98 (167)
T ss_pred --------EEEEEEECC-EEEEEEEEeCCchH-------------HHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHH
Confidence 000111111 22467899999942 234466788888888877765433211 112234
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
..+++..+.+...+.| .||.|+.+.
T Consensus 99 ~~i~~~~~~~~p~iiv----~nK~Dl~~~ 123 (167)
T cd01867 99 RNIEEHASEDVERMLV----GNKCDMEEK 123 (167)
T ss_pred HHHHHhCCCCCcEEEE----EECcccccc
Confidence 4444455556677888 899999753
No 54
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.25 E-value=1.4e-05 Score=78.67 Aligned_cols=116 Identities=13% Similarity=0.188 Sum_probs=68.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
..|+|||.+++||||+++.+++..|-+......+...
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~------------------------------------------- 41 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF------------------------------------------- 41 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE-------------------------------------------
Confidence 5799999999999999999999876333222111100
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHH---
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQ--- 189 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~--- 189 (775)
....+++.+ ....++++|+||- +....+...|+++.+++++++-. +..-.-.++.+
T Consensus 42 ------~~~~~~~~~-~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~il~v~d~-~~~~s~~~~~~~~~ 100 (168)
T cd01866 42 ------GARMITIDG-KQIKLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLVYDI-TRRETFNHLTSWLE 100 (168)
T ss_pred ------EEEEEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhccCCEEEEEEEC-CCHHHHHHHHHHHH
Confidence 001111111 1125789999993 13456778899888887775554 32222222322
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
..++....+...+.| .||.|+.+
T Consensus 101 ~~~~~~~~~~pvivv----~nK~Dl~~ 123 (168)
T cd01866 101 DARQHSNSNMTIMLI----GNKCDLES 123 (168)
T ss_pred HHHHhCCCCCcEEEE----EECccccc
Confidence 223322224567888 89999874
No 55
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.23 E-value=1.2e-05 Score=93.55 Aligned_cols=137 Identities=22% Similarity=0.291 Sum_probs=83.4
Q ss_pred HHHhcCCCCCCC-CCeEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccEEEEEeeccccceeeeccCCccccChHH
Q psy3395 20 AFTQLGVPMQMD-LPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDE 97 (775)
Q Consensus 20 ~l~~~G~~~~i~-lP~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~ 97 (775)
.+.+.|.. +++ -.+|+|||..++||||++|+|+|...+..+. ..+|.....+.
T Consensus 106 ~~ea~g~~-~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~------------------------ 160 (763)
T TIGR00993 106 QLEAEGQD-PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE------------------------ 160 (763)
T ss_pred hhhhhhcc-ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEE------------------------
Confidence 34445543 233 2469999999999999999999987545443 13333221110
Q ss_pred HHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhc-cccEEEEEe
Q psy3395 98 VRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITK-ETCLILAVT 176 (775)
Q Consensus 98 v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~-~~~iILaV~ 176 (775)
..+ +-..+++||+||+...... ....+.+...+..|++. +-.++|.|.
T Consensus 161 -------------------------~~i---dG~~L~VIDTPGL~dt~~d---q~~neeILk~Ik~~Lsk~gpDVVLlV~ 209 (763)
T TIGR00993 161 -------------------------GLV---QGVKIRVIDTPGLKSSASD---QSKNEKILSSVKKFIKKNPPDIVLYVD 209 (763)
T ss_pred -------------------------EEE---CCceEEEEECCCCCccccc---hHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 001 1235889999999864321 12334556667778774 345777777
Q ss_pred cCC---CCccchHHHHHHHhc-CC-CCCcceeccCCCCcccCCCC
Q psy3395 177 PAN---TDLATSDALQIAKQV-DP-DVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 177 ~a~---~d~~~s~~l~lar~~-DP-~g~RtigVdLPGlTK~D~~~ 216 (775)
..+ .|.....+++..+++ .+ --.++|.| +|+.|..+
T Consensus 210 RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVV----FThgD~lp 250 (763)
T TIGR00993 210 RLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVT----LTHAASAP 250 (763)
T ss_pred eCCCccccHHHHHHHHHHHHHhCHHhHcCEEEE----EeCCccCC
Confidence 654 233333456665543 32 23689999 99999985
No 56
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.22 E-value=9.4e-06 Score=78.63 Aligned_cols=67 Identities=18% Similarity=0.288 Sum_probs=40.4
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc--hHHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT--SDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~--s~~l~lar~~DP~g~RtigVdLPG 208 (775)
..++++|+||.. .....+..|+...+++|++ .+++.++.. .+.+..++..+ ....+.|
T Consensus 51 ~~~~~~DtpG~~-------------~~~~~~~~~~~~ad~ii~V-~d~~~~~~~~~~~~~~~~~~~~--~~~~ilv---- 110 (164)
T cd04171 51 KRLGFIDVPGHE-------------KFIKNMLAGAGGIDLVLLV-VAADEGIMPQTREHLEILELLG--IKRGLVV---- 110 (164)
T ss_pred cEEEEEECCChH-------------HHHHHHHhhhhcCCEEEEE-EECCCCccHhHHHHHHHHHHhC--CCcEEEE----
Confidence 378999999952 1223455677777766654 455443322 22344444332 1367889
Q ss_pred CcccCCCCC
Q psy3395 209 MTKVPIGDQ 217 (775)
Q Consensus 209 lTK~D~~~~ 217 (775)
+||.|+.++
T Consensus 111 ~NK~Dl~~~ 119 (164)
T cd04171 111 LTKADLVDE 119 (164)
T ss_pred EECccccCH
Confidence 999999754
No 57
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.22 E-value=1.5e-05 Score=90.67 Aligned_cols=125 Identities=19% Similarity=0.234 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
..+.|+|+|..++|||||+++|+|......+. ...||-+...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~------------------------------------- 213 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDI------------------------------------- 213 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeE-------------------------------------
Confidence 45689999999999999999999976432221 1122211111
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQ 189 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~ 189 (775)
.++.. -..++|+|+||+.+...- ...++.........++...+.+|++ ..+...+..++ .+
T Consensus 214 ------------~~~~~---~~~~~liDT~G~~~~~~~--~~~~e~~~~~~~~~~~~~ad~~ilV-~D~~~~~~~~~-~~ 274 (429)
T TIGR03594 214 ------------PFERN---GKKYLLIDTAGIRRKGKV--TEGVEKYSVLRTLKAIERADVVLLV-LDATEGITEQD-LR 274 (429)
T ss_pred ------------EEEEC---CcEEEEEECCCccccccc--hhhHHHHHHHHHHHHHHhCCEEEEE-EECCCCccHHH-HH
Confidence 11111 125789999998653211 1122221112234677777766665 45555454444 33
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIG 215 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~ 215 (775)
+++.+.-.|.+.+.| ++|+|+.
T Consensus 275 ~~~~~~~~~~~iiiv----~NK~Dl~ 296 (429)
T TIGR03594 275 IAGLILEAGKALVIV----VNKWDLV 296 (429)
T ss_pred HHHHHHHcCCcEEEE----EECcccC
Confidence 444443357788999 9999998
No 58
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.22 E-value=1.2e-05 Score=91.71 Aligned_cols=120 Identities=20% Similarity=0.227 Sum_probs=76.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCcccc-CcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRG-SGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~-~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
.|++||..++|||||++.|+|...-..+ ...+||-+...
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~---------------------------------------- 40 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYG---------------------------------------- 40 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEE----------------------------------------
Confidence 3899999999999999999997632221 22344432111
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--HHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--ALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~l~l 190 (775)
.+++.+ ..++|+|+||+.. ....+.+.+.+.+..++...+.+ |.|+.+...+...+ ..+.
T Consensus 41 ---------~~~~~~---~~~~liDTpG~~~-----~~~~~~~~~~~~~~~~~~~ad~v-l~vvD~~~~~~~~d~~i~~~ 102 (429)
T TIGR03594 41 ---------DAEWGG---REFILIDTGGIEE-----DDDGLDKQIREQAEIAIEEADVI-LFVVDGREGLTPEDEEIAKW 102 (429)
T ss_pred ---------EEEECC---eEEEEEECCCCCC-----cchhHHHHHHHHHHHHHhhCCEE-EEEEeCCCCCCHHHHHHHHH
Confidence 111111 1478999999853 12345667888888999888755 55556655444433 3444
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCCh
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQP 218 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~~ 218 (775)
+++ .+...+.| ++|+|+.+..
T Consensus 103 l~~---~~~piilV----vNK~D~~~~~ 123 (429)
T TIGR03594 103 LRK---SGKPVILV----ANKIDGKKED 123 (429)
T ss_pred HHH---hCCCEEEE----EECccCCccc
Confidence 444 46778999 9999987543
No 59
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.19 E-value=1.3e-05 Score=88.18 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
-++.|++||.++|||||||++|++..
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~ 181 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAK 181 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCC
Confidence 35789999999999999999999865
No 60
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.19 E-value=2.5e-05 Score=88.48 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
++.|++||..+|||||||++|++..
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak 182 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK 182 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC
Confidence 4589999999999999999999865
No 61
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.18 E-value=7.1e-06 Score=81.45 Aligned_cols=126 Identities=20% Similarity=0.261 Sum_probs=70.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|+|..+|||||++++|++..+.+.....++- . +.+... .+. ..|
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~---------------~--------~~~~~~--~~~------~~~-- 47 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEE---------------T--------FLDVLK--EER------ERG-- 47 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceec---------------c--------cccCCH--HHH------HcC--
Confidence 3899999999999999999998752222111110 0 000000 000 001
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc--hHHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT--SDALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~--s~~l~la 191 (775)
..+......++. ....++|+|+||... .......|+...+.+++++ ++...... .+.+..+
T Consensus 48 ~~~~~~~~~~~~---~~~~~~liDtpG~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~~~~~~~~~~~~ 110 (189)
T cd00881 48 ITIKSGVATFEW---PDRRVNFIDTPGHED-------------FSSEVIRGLSVSDGAILVV-DANEGVQPQTREHLRIA 110 (189)
T ss_pred CCeecceEEEee---CCEEEEEEeCCCcHH-------------HHHHHHHHHHhcCEEEEEE-ECCCCCcHHHHHHHHHH
Confidence 011111222222 245799999999632 2345667777888777654 44432221 1233344
Q ss_pred HhcCCCCCcceeccCCCCcccCCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+. .+...+.| +||.|+..
T Consensus 111 ~~---~~~~i~iv----~nK~D~~~ 128 (189)
T cd00881 111 RE---GGLPIIVA----INKIDRVG 128 (189)
T ss_pred HH---CCCCeEEE----EECCCCcc
Confidence 43 45678899 99999986
No 62
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.14 E-value=1.4e-05 Score=96.70 Aligned_cols=123 Identities=18% Similarity=0.229 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
.+|.|++||..++|||||+++|+|..+-..+. -.+||-.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~---------------------------------------- 313 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDR---------------------------------------- 313 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEE----------------------------------------
Confidence 46889999999999999999999975411111 1223211
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQ 189 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~ 189 (775)
+...... +...+.|+|+||+... ..++...+...+..|+...+.+|+ |+.+...+...+. .
T Consensus 314 -----------~~~~~~~-~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~iL~-VvDa~~~~~~~d~-~ 374 (712)
T PRK09518 314 -----------VSYDAEW-AGTDFKLVDTGGWEAD-----VEGIDSAIASQAQIAVSLADAVVF-VVDGQVGLTSTDE-R 374 (712)
T ss_pred -----------EEEEEEE-CCEEEEEEeCCCcCCC-----CccHHHHHHHHHHHHHHhCCEEEE-EEECCCCCCHHHH-H
Confidence 1111111 1225789999998632 234566677778888888886655 5556554433331 2
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+++.+...+...+.| ++|+|+..
T Consensus 375 i~~~Lr~~~~pvIlV----~NK~D~~~ 397 (712)
T PRK09518 375 IVRMLRRAGKPVVLA----VNKIDDQA 397 (712)
T ss_pred HHHHHHhcCCCEEEE----EECccccc
Confidence 233333467788999 99999864
No 63
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.14 E-value=3e-05 Score=75.82 Aligned_cols=117 Identities=15% Similarity=0.263 Sum_probs=67.9
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
..|+|||..++||||+++++++..|-+ .. ..|-. ...
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~-~~t~~---~~~-------------------------------------- 39 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SY-ISTIG---VDF-------------------------------------- 39 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CC-CCccc---eeE--------------------------------------
Confidence 479999999999999999999877622 11 00100 000
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-c-cchHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-L-ATSDALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~-~~s~~l~l 190 (775)
....+.+.+ ....+.++|+||.. ....+...|+++.+++|+++-..+.+ + .-...+..
T Consensus 40 ------~~~~~~~~~-~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~ 99 (166)
T cd01869 40 ------KIRTIELDG-KTIKLQIWDTAGQE-------------RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQE 99 (166)
T ss_pred ------EEEEEEECC-EEEEEEEEECCCcH-------------hHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHH
Confidence 000111111 12356799999942 23557788888899888877554322 0 11123333
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+.....+...+.| .||.|+..
T Consensus 100 ~~~~~~~~~~~iiv----~nK~Dl~~ 121 (166)
T cd01869 100 IDRYASENVNKLLV----GNKCDLTD 121 (166)
T ss_pred HHHhCCCCCcEEEE----EEChhccc
Confidence 44444334566777 89999864
No 64
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.14 E-value=1.4e-05 Score=77.50 Aligned_cols=70 Identities=14% Similarity=0.307 Sum_probs=42.5
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHHHHh---cCCCCCcceecc
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQIAKQ---VDPDVLNLTLVD 205 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~lar~---~DP~g~RtigVd 205 (775)
..+.++|+||.. ..+.+...|+.+.+++|+++-..+.. +.. ...+..+.+ +...+.+.+.|
T Consensus 45 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv- 110 (162)
T cd04157 45 LSFTAFDMSGQG-------------KYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFF- 110 (162)
T ss_pred EEEEEEECCCCH-------------hhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEE-
Confidence 457899999953 23557778898888887765543321 111 112222222 12245778889
Q ss_pred CCCCcccCCCCC
Q psy3395 206 LPGMTKVPIGDQ 217 (775)
Q Consensus 206 LPGlTK~D~~~~ 217 (775)
+||.|+.+.
T Consensus 111 ---~NK~Dl~~~ 119 (162)
T cd04157 111 ---ANKMDLPDA 119 (162)
T ss_pred ---EeCccccCC
Confidence 999998753
No 65
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.14 E-value=1.4e-05 Score=77.11 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=40.3
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhh--ccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFIT--KETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPG 208 (775)
.++.|+|+||...... .+.+ ..+...|+. ..+.+|+ |+.+...-........+.+ .+...++|
T Consensus 43 ~~~~liDtpG~~~~~~--~~~~-----~~~~~~~~~~~~~d~vi~-v~d~~~~~~~~~~~~~~~~---~~~~~iiv---- 107 (158)
T cd01879 43 KEIEIVDLPGTYSLSP--YSED-----EKVARDFLLGEKPDLIVN-VVDATNLERNLYLTLQLLE---LGLPVVVA---- 107 (158)
T ss_pred eEEEEEECCCccccCC--CChh-----HHHHHHHhcCCCCcEEEE-EeeCCcchhHHHHHHHHHH---cCCCEEEE----
Confidence 3789999999865321 1111 235566665 5665555 4445432111222222333 35678888
Q ss_pred CcccCCCCC
Q psy3395 209 MTKVPIGDQ 217 (775)
Q Consensus 209 lTK~D~~~~ 217 (775)
+||.|+.+.
T Consensus 108 ~NK~Dl~~~ 116 (158)
T cd01879 108 LNMIDEAEK 116 (158)
T ss_pred Eehhhhccc
Confidence 999999753
No 66
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.13 E-value=1.4e-05 Score=76.49 Aligned_cols=24 Identities=33% Similarity=0.668 Sum_probs=22.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+|+++|.+++|||||+++|+|..|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~ 24 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQF 24 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCC
Confidence 589999999999999999999876
No 67
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.13 E-value=2.6e-05 Score=76.39 Aligned_cols=24 Identities=25% Similarity=0.762 Sum_probs=22.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|+|||..++||||+++++++..|
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~ 25 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKF 25 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998876
No 68
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.13 E-value=2.1e-05 Score=76.98 Aligned_cols=119 Identities=16% Similarity=0.263 Sum_probs=71.4
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
...|+|||+.++||||+++++.+..|.+... .|.. +..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~-~~~--------------------------------------- 40 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIG-VDF--------------------------------------- 40 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC--Cccc-eEE---------------------------------------
Confidence 3579999999999999999998776522111 1110 000
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-c-cchHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-L-ATSDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~-~~s~~l~ 189 (775)
....+.+.+ ....++|+|+||-. ....+...|+...+++++++...+.. + .....+.
T Consensus 41 -------~~~~~~~~~-~~~~l~i~D~~G~~-------------~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~ 99 (165)
T cd01864 41 -------TMKTLEIEG-KRVKLQIWDTAGQE-------------RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIE 99 (165)
T ss_pred -------EEEEEEECC-EEEEEEEEECCChH-------------HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHH
Confidence 001111111 12368899999931 34557788888888888776554321 1 1123344
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.++...+.+...+.| .||.|+.+.
T Consensus 100 ~i~~~~~~~~p~ivv----~nK~Dl~~~ 123 (165)
T cd01864 100 EVEKYGASNVVLLLI----GNKCDLEEQ 123 (165)
T ss_pred HHHHhCCCCCcEEEE----EECcccccc
Confidence 445555555667888 899998743
No 69
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.12 E-value=2.9e-05 Score=76.09 Aligned_cols=116 Identities=17% Similarity=0.191 Sum_probs=69.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc-cccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~-~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
.|+++|++++||||+++.+++..|.+.-.-+ .+++..
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~------------------------------------------ 40 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV------------------------------------------ 40 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEE------------------------------------------
Confidence 6999999999999999999998763211100 001000
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~l~l 190 (775)
..+... .....+.|+|+||.. ..+.+...|+++.+++++++...+.+- ...+.+..
T Consensus 41 --------~~~~~~-~~~~~~~l~Dt~g~~-------------~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~ 98 (165)
T cd01865 41 --------KTVFRN-DKRVKLQIWDTAGQE-------------RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ 98 (165)
T ss_pred --------EEEEEC-CEEEEEEEEECCChH-------------HHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHH
Confidence 001110 012357799999942 234567788888888877665443210 11223444
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.++..+.....+.| .||+|+.++
T Consensus 99 i~~~~~~~~piivv----~nK~Dl~~~ 121 (165)
T cd01865 99 IKTYSWDNAQVILV----GNKCDMEDE 121 (165)
T ss_pred HHHhCCCCCCEEEE----EECcccCcc
Confidence 55555556678888 899998754
No 70
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.11 E-value=3.7e-05 Score=75.35 Aligned_cols=117 Identities=14% Similarity=0.208 Sum_probs=70.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|||+.++||||+++.+++..|.+....+ +.....
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t-~~~~~~------------------------------------------ 40 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHT-IGVEFG------------------------------------------ 40 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCcc-cceeEE------------------------------------------
Confidence 5899999999999999999988774322211 000000
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-c-cchHHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-L-ATSDALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~-~~s~~l~la 191 (775)
...+.+.+ ....+.+.|+||.. ..+.+...|+++.+++|+++...+.+ + .-...+..+
T Consensus 41 ------~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~ 100 (166)
T cd04122 41 ------TRIIEVNG-QKIKLQIWDTAGQE-------------RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA 100 (166)
T ss_pred ------EEEEEECC-EEEEEEEEECCCcH-------------HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 00111111 12357799999942 34567788999999988887655422 1 112233334
Q ss_pred HhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+.........+.| .+|.|+..+
T Consensus 101 ~~~~~~~~~iiiv----~nK~Dl~~~ 122 (166)
T cd04122 101 RNLTNPNTVIFLI----GNKADLEAQ 122 (166)
T ss_pred HHhCCCCCeEEEE----EECcccccc
Confidence 4443334566777 799998643
No 71
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.11 E-value=8.6e-06 Score=90.08 Aligned_cols=132 Identities=27% Similarity=0.417 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCC
Q psy3395 10 LIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKG 89 (775)
Q Consensus 10 li~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~ 89 (775)
|-.++.++++.|..+.. ..+ .|+|+|+.|+||||++|||-|+. +-+.|-. |
T Consensus 17 ~~~~~s~i~~~l~~~~~---~~l-~IaV~G~sGsGKSSfINalrGl~--~~d~~aA---~-------------------- 67 (376)
T PF05049_consen 17 LQEVVSKIREALKDIDN---APL-NIAVTGESGSGKSSFINALRGLG--HEDEGAA---P-------------------- 67 (376)
T ss_dssp HHHHHHHHHHHHHHHHH-----E-EEEEEESTTSSHHHHHHHHTT----TTSTTS-------------------------
T ss_pred HHHHHHHHHHHHHHhhc---Cce-EEEEECCCCCCHHHHHHHHhCCC--CCCcCcC---C--------------------
Confidence 45677888888777642 233 69999999999999999999864 3222210 0
Q ss_pred ccccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhh---
Q psy3395 90 KKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFIT--- 166 (775)
Q Consensus 90 ~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~--- 166 (775)
+|.- .-+.. .-....|..||++|.||||+... ..+ ...|+.
T Consensus 68 --------------------tGv~-etT~~--~~~Y~~p~~pnv~lWDlPG~gt~---~f~----------~~~Yl~~~~ 111 (376)
T PF05049_consen 68 --------------------TGVV-ETTME--PTPYPHPKFPNVTLWDLPGIGTP---NFP----------PEEYLKEVK 111 (376)
T ss_dssp --------------------SSSH-SCCTS---EEEE-SS-TTEEEEEE--GGGS---S------------HHHHHHHTT
T ss_pred --------------------CCCC-cCCCC--CeeCCCCCCCCCeEEeCCCCCCC---CCC----------HHHHHHHcc
Confidence 0000 00001 11234589999999999998532 121 223333
Q ss_pred --ccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCC
Q psy3395 167 --KETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPI 214 (775)
Q Consensus 167 --~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~ 214 (775)
+-+.+|+ |++ ..+. ..-..+|+++--.|.+.+.| -||+|.
T Consensus 112 ~~~yD~fii-i~s--~rf~-~ndv~La~~i~~~gK~fyfV----RTKvD~ 153 (376)
T PF05049_consen 112 FYRYDFFII-ISS--ERFT-ENDVQLAKEIQRMGKKFYFV----RTKVDS 153 (376)
T ss_dssp GGG-SEEEE-EES--SS---HHHHHHHHHHHHTT-EEEEE----E--HHH
T ss_pred ccccCEEEE-EeC--CCCc-hhhHHHHHHHHHcCCcEEEE----Eecccc
Confidence 2344444 443 2233 33355666666678999999 999985
No 72
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.11 E-value=1.1e-05 Score=79.75 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=42.2
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGM 209 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGl 209 (775)
-..+.|+|+||..+ ...++..|+...+++|+++- +......++ +.........+...+.| +
T Consensus 66 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~D-~~~~~~~~~-~~~~~~~~~~~~~iiiv----~ 126 (179)
T cd01890 66 EYLLNLIDTPGHVD-------------FSYEVSRSLAACEGALLLVD-ATQGVEAQT-LANFYLALENNLEIIPV----I 126 (179)
T ss_pred cEEEEEEECCCChh-------------hHHHHHHHHHhcCeEEEEEE-CCCCccHhh-HHHHHHHHHcCCCEEEE----E
Confidence 34688999999743 24467788888888877654 433322222 12212222245678889 9
Q ss_pred cccCCCC
Q psy3395 210 TKVPIGD 216 (775)
Q Consensus 210 TK~D~~~ 216 (775)
||.|+.+
T Consensus 127 NK~Dl~~ 133 (179)
T cd01890 127 NKIDLPS 133 (179)
T ss_pred ECCCCCc
Confidence 9999864
No 73
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.11 E-value=1.9e-05 Score=77.29 Aligned_cols=118 Identities=17% Similarity=0.285 Sum_probs=69.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcc-cccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~-~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
.++.|+|+|..++||||+++++++..+.| +.+. .+....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~--------------------------------------- 45 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFM--------------------------------------- 45 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEE---------------------------------------
Confidence 35889999999999999999999766533 2211 110000
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDA 187 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~ 187 (775)
.-.+.+. .....+.++|+||.. ..+.+...|+...+++++++...+.+- .....
T Consensus 46 ----------~~~~~~~-~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 101 (169)
T cd04114 46 ----------IKTVEIK-GEKIKLQIWDTAGQE-------------RFRSITQSYYRSANALILTYDITCEESFRCLPEW 101 (169)
T ss_pred ----------EEEEEEC-CEEEEEEEEECCCcH-------------HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHH
Confidence 0001111 111356799999942 234456778888888877765433211 01123
Q ss_pred HHHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 188 l~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+..++...+.+...+.| .||.|+.+
T Consensus 102 ~~~l~~~~~~~~~~i~v----~NK~D~~~ 126 (169)
T cd04114 102 LREIEQYANNKVITILV----GNKIDLAE 126 (169)
T ss_pred HHHHHHhCCCCCeEEEE----EECccccc
Confidence 44445545555667888 89999864
No 74
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.10 E-value=2.6e-05 Score=89.56 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
-++.|++||-.||||||||++|++..
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~ak 183 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAK 183 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCC
Confidence 46789999999999999999999865
No 75
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.09 E-value=1.7e-05 Score=79.50 Aligned_cols=24 Identities=38% Similarity=0.546 Sum_probs=22.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|++||..++||||+++++++..|
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~ 28 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEF 28 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCc
Confidence 599999999999999999998765
No 76
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.09 E-value=2.1e-05 Score=89.87 Aligned_cols=127 Identities=21% Similarity=0.248 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
+.++|+|||..++||||++++|+|....+.+.. ..||-++
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~--------------------------------------- 212 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSI--------------------------------------- 212 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEE---------------------------------------
Confidence 467899999999999999999999753332221 1222111
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQ 189 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~ 189 (775)
...+. .+-..++|+|+||+.+..... ..++.....-..+++...+.+|| |+++...+..++. +
T Consensus 213 ------------~~~~~-~~~~~~~lvDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~il-ViD~~~~~~~~~~-~ 275 (435)
T PRK00093 213 ------------DTPFE-RDGQKYTLIDTAGIRRKGKVT--EGVEKYSVIRTLKAIERADVVLL-VIDATEGITEQDL-R 275 (435)
T ss_pred ------------EEEEE-ECCeeEEEEECCCCCCCcchh--hHHHHHHHHHHHHHHHHCCEEEE-EEeCCCCCCHHHH-H
Confidence 11111 112357899999986532111 11221111123456777765555 5566665555543 3
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+++.+.-.|...+.| ++|+|+.++
T Consensus 276 i~~~~~~~~~~~ivv----~NK~Dl~~~ 299 (435)
T PRK00093 276 IAGLALEAGRALVIV----VNKWDLVDE 299 (435)
T ss_pred HHHHHHHcCCcEEEE----EECccCCCH
Confidence 444444456788899 999999843
No 77
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.07 E-value=3.3e-05 Score=75.07 Aligned_cols=116 Identities=18% Similarity=0.262 Sum_probs=69.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|+|+.++||||+++.|++..|-+......+.. .
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~-----~--------------------------------------- 37 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVE-----F--------------------------------------- 37 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-----E---------------------------------------
Confidence 58999999999999999999887633322111100 0
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch---HHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS---DALQI 190 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s---~~l~l 190 (775)
....+.+. .....+.|+|+||.. ....+...|+++.+++|+++...+.+ +.. ..+..
T Consensus 38 -----~~~~~~~~-~~~~~l~l~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~ 97 (161)
T cd04113 38 -----GSKIIRVG-GKRVKLQIWDTAGQE-------------RFRSVTRSYYRGAAGALLVYDITNRT-SFEALPTWLSD 97 (161)
T ss_pred -----EEEEEEEC-CEEEEEEEEECcchH-------------HHHHhHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHH
Confidence 00111111 122467899999942 23457778888888887776554422 112 22333
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+.....+...+.| .||.|+..+
T Consensus 98 ~~~~~~~~~~iivv----~nK~D~~~~ 120 (161)
T cd04113 98 ARALASPNIVVILV----GNKSDLADQ 120 (161)
T ss_pred HHHhCCCCCeEEEE----EEchhcchh
Confidence 33332223567777 899998753
No 78
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.07 E-value=5.6e-05 Score=73.41 Aligned_cols=26 Identities=35% Similarity=0.631 Sum_probs=23.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLP 59 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flP 59 (775)
.|+|||..++||||+++++++..|.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~ 28 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSE 28 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 58999999999999999999998744
No 79
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.07 E-value=4.5e-05 Score=74.05 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=42.5
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH----HHHHHhcCCCCCcceeccC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA----LQIAKQVDPDVLNLTLVDL 206 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~----l~lar~~DP~g~RtigVdL 206 (775)
..+.++|+||... ...+...|++..+++|+++...+.. .-..+ ..+.+..+..+...+.|
T Consensus 50 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piiiv-- 113 (164)
T cd04145 50 AILDILDTAGQEE-------------FSAMREQYMRTGEGFLLVFSVTDRG-SFEEVDKFHTQILRVKDRDEFPMILV-- 113 (164)
T ss_pred EEEEEEECCCCcc-------------hhHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCCEEEE--
Confidence 4578999999532 3457778998888888777544321 11111 12222234445677888
Q ss_pred CCCcccCCCCC
Q psy3395 207 PGMTKVPIGDQ 217 (775)
Q Consensus 207 PGlTK~D~~~~ 217 (775)
.||+|+.++
T Consensus 114 --~NK~Dl~~~ 122 (164)
T cd04145 114 --GNKADLEHQ 122 (164)
T ss_pred --eeCcccccc
Confidence 899998643
No 80
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.06 E-value=2.2e-05 Score=79.37 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=44.1
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHHHhcCCCCCcceeccCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIAKQVDPDVLNLTLVDLP 207 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~lar~~DP~g~RtigVdLP 207 (775)
...+.|+|+||... ...++..|+.+.+++|+++.. ......+ ..+..+.. .+.+.+.|
T Consensus 64 ~~~~~l~DtpG~~~-------------~~~~~~~~~~~~d~~ilV~d~-~~~~~~~~~~~~~~~~~---~~~p~iiv--- 123 (194)
T cd01891 64 DTKINIVDTPGHAD-------------FGGEVERVLSMVDGVLLLVDA-SEGPMPQTRFVLKKALE---LGLKPIVV--- 123 (194)
T ss_pred CEEEEEEECCCcHH-------------HHHHHHHHHHhcCEEEEEEEC-CCCccHHHHHHHHHHHH---cCCCEEEE---
Confidence 35789999999632 345778899999988775554 3333222 12333332 46678889
Q ss_pred CCcccCCCCC
Q psy3395 208 GMTKVPIGDQ 217 (775)
Q Consensus 208 GlTK~D~~~~ 217 (775)
++|+|+.+.
T Consensus 124 -~NK~Dl~~~ 132 (194)
T cd01891 124 -INKIDRPDA 132 (194)
T ss_pred -EECCCCCCC
Confidence 999999753
No 81
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.06 E-value=5.9e-05 Score=73.21 Aligned_cols=116 Identities=16% Similarity=0.281 Sum_probs=68.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|||+.++||||+++++++..|.+....+.+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~----------------------------------------------- 34 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIG----------------------------------------------- 34 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc-----------------------------------------------
Confidence 599999999999999999999886321110000
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~l~la 191 (775)
+.-....+.+.+ ....+.+.|+||.. ....+...|+...+++|+++-..+.+- .-...+..+
T Consensus 35 --~~~~~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~ 98 (168)
T cd04119 35 --IDYGVKKVSVRN-KEVRVNFFDLSGHP-------------EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEM 98 (168)
T ss_pred --eeEEEEEEEECC-eEEEEEEEECCccH-------------HHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHH
Confidence 000001122222 23468899999952 233567778888888887764433210 011223333
Q ss_pred Hh-cCC----CCCcceeccCCCCcccCCCC
Q psy3395 192 KQ-VDP----DVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 r~-~DP----~g~RtigVdLPGlTK~D~~~ 216 (775)
++ ..+ .+.+.++| .||.|+.+
T Consensus 99 ~~~~~~~~~~~~~piilv----~nK~Dl~~ 124 (168)
T cd04119 99 KQEGGPHGNMENIVVVVC----ANKIDLTK 124 (168)
T ss_pred HHhccccccCCCceEEEE----EEchhccc
Confidence 32 332 45678888 89999863
No 82
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.06 E-value=6.7e-05 Score=73.00 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=42.7
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~lar~~DP~g~RtigVdLPG 208 (775)
..+.+.|+||. +..+.|+..|+.+.+++|+++...+.+ +.. ...+...+...+ +...+.|
T Consensus 52 ~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv---- 113 (164)
T cd04101 52 VELFIFDSAGQ-------------ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASK-HMPGVLV---- 113 (164)
T ss_pred EEEEEEECCCH-------------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEE----
Confidence 46789999993 244668888998888877766432211 110 123344444443 3577888
Q ss_pred CcccCCCCC
Q psy3395 209 MTKVPIGDQ 217 (775)
Q Consensus 209 lTK~D~~~~ 217 (775)
.||.|+.++
T Consensus 114 ~nK~Dl~~~ 122 (164)
T cd04101 114 GNKMDLADK 122 (164)
T ss_pred EECcccccc
Confidence 899998643
No 83
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.05 E-value=2.8e-05 Score=89.80 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
..++|++||..++|||||+++|+|..+...+. ...||-+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~------------------------------------- 252 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDS------------------------------------- 252 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceE-------------------------------------
Confidence 56899999999999999999999976522221 1233322111
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHH-HHHHhhccccEEEEEecCCCCccchHHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDM-LFQFITKETCLILAVTPANTDLATSDAL 188 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~l-v~~yi~~~~~iILaV~~a~~d~~~s~~l 188 (775)
.+++.+ ..+.|+|+||+.+..... ...+....+ ...++...+.+|+++ .+......++.
T Consensus 253 ------------~~~~~~---~~~~l~DTaG~~~~~~~~---~~~e~~~~~~~~~~i~~ad~vilV~-Da~~~~s~~~~- 312 (472)
T PRK03003 253 ------------LIELGG---KTWRFVDTAGLRRRVKQA---SGHEYYASLRTHAAIEAAEVAVVLI-DASEPISEQDQ- 312 (472)
T ss_pred ------------EEEECC---EEEEEEECCCcccccccc---chHHHHHHHHHHHHHhcCCEEEEEE-eCCCCCCHHHH-
Confidence 111111 235699999985432111 111222222 234677777666554 55554444442
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.++..+...|...+.| ++|+|+.+
T Consensus 313 ~~~~~~~~~~~piIiV----~NK~Dl~~ 336 (472)
T PRK03003 313 RVLSMVIEAGRALVLA----FNKWDLVD 336 (472)
T ss_pred HHHHHHHHcCCCEEEE----EECcccCC
Confidence 3444444457788889 99999975
No 84
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.05 E-value=6.1e-05 Score=72.63 Aligned_cols=115 Identities=15% Similarity=0.263 Sum_probs=67.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|+|..++||||+++++++..|-+....+ ++.....
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~-~~~~~~~----------------------------------------- 39 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHEST-TQASFFQ----------------------------------------- 39 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCc-cceeEEE-----------------------------------------
Confidence 5899999999999999999988763321111 1100000
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch---HHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS---DALQI 190 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s---~~l~l 190 (775)
..+.+.+ ....+.++|+||.. ....+...|+.+.+.+++++...+.+ ... ..+..
T Consensus 40 -------~~~~~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~ 97 (162)
T cd04123 40 -------KTVNIGG-KRIDLAIWDTAGQE-------------RYHALGPIYYRDADGAILVYDITDAD-SFQKVKKWIKE 97 (162)
T ss_pred -------EEEEECC-EEEEEEEEECCchH-------------HHHHhhHHHhccCCEEEEEEECCCHH-HHHHHHHHHHH
Confidence 0011111 12357899999932 23446667787777776666543332 111 12333
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+...+.....++| +||.|+.+
T Consensus 98 i~~~~~~~~piiiv----~nK~D~~~ 119 (162)
T cd04123 98 LKQMRGNNISLVIV----GNKIDLER 119 (162)
T ss_pred HHHhCCCCCeEEEE----EECccccc
Confidence 34444445678888 89999874
No 85
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.04 E-value=6.2e-05 Score=72.96 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=67.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|+|..++||||+++++++..|-+......+.. ..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~---~~---------------------------------------- 38 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVD---FK---------------------------------------- 38 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeE---EE----------------------------------------
Confidence 58999999999999999999987622111111100 00
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH---HHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA---LQI 190 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~---l~l 190 (775)
...+.+. .....+.++|+||.. ....+...|+++.+.+|+++...+.+ +...+ +..
T Consensus 39 ------~~~~~~~-~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~l~~ 97 (164)
T smart00175 39 ------TKTIEVD-GKRVKLQIWDTAGQE-------------RFRSITSSYYRGAVGALLVYDITNRE-SFENLKNWLKE 97 (164)
T ss_pred ------EEEEEEC-CEEEEEEEEECCChH-------------HHHHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHH
Confidence 0011111 112357799999942 23457788888888888877654321 11222 222
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.......+...+.| .||.|+..
T Consensus 98 ~~~~~~~~~pivvv----~nK~D~~~ 119 (164)
T smart00175 98 LREYADPNVVIMLV----GNKSDLED 119 (164)
T ss_pred HHHhCCCCCeEEEE----EEchhccc
Confidence 22222235677888 89999764
No 86
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.03 E-value=2.4e-05 Score=75.73 Aligned_cols=70 Identities=13% Similarity=0.285 Sum_probs=43.3
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc--hHHHHHHHhcCCCCCcceeccCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT--SDALQIAKQVDPDVLNLTLVDLP 207 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~--s~~l~lar~~DP~g~RtigVdLP 207 (775)
..+.++|+||... .+.+...|++..+++++++-+.+.+ +.. .....+.+.....+...+.|
T Consensus 43 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv--- 106 (158)
T cd00878 43 VSFTVWDVGGQDK-------------IRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIF--- 106 (158)
T ss_pred EEEEEEECCCChh-------------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEE---
Confidence 4688999999532 2446677888888887765554432 111 11223333334456778888
Q ss_pred CCcccCCCCC
Q psy3395 208 GMTKVPIGDQ 217 (775)
Q Consensus 208 GlTK~D~~~~ 217 (775)
.||.|+...
T Consensus 107 -~nK~D~~~~ 115 (158)
T cd00878 107 -ANKQDLPGA 115 (158)
T ss_pred -eeccCCccc
Confidence 899998753
No 87
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.03 E-value=4.9e-05 Score=73.70 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=42.0
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH---HHHHHHhcCCCCCcceeccCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD---ALQIAKQVDPDVLNLTLVDLP 207 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~---~l~lar~~DP~g~RtigVdLP 207 (775)
..+.|+|+||.. ..+.+...|+++.+.++++....+.+ .-.. .+..++...+ +...+.|
T Consensus 51 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~v~v~d~~~~~-s~~~l~~~~~~~~~~~~-~~p~iiv--- 112 (162)
T cd04106 51 VRLMLWDTAGQE-------------EFDAITKAYYRGAQACILVFSTTDRE-SFEAIESWKEKVEAECG-DIPMVLV--- 112 (162)
T ss_pred EEEEEeeCCchH-------------HHHHhHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCC-CCCEEEE---
Confidence 468899999931 34567788998888877766543322 1111 2222333223 4567888
Q ss_pred CCcccCCCCC
Q psy3395 208 GMTKVPIGDQ 217 (775)
Q Consensus 208 GlTK~D~~~~ 217 (775)
.||.|+.++
T Consensus 113 -~nK~Dl~~~ 121 (162)
T cd04106 113 -QTKIDLLDQ 121 (162)
T ss_pred -EEChhcccc
Confidence 899998754
No 88
>KOG0448|consensus
Probab=98.03 E-value=0.00026 Score=81.96 Aligned_cols=167 Identities=23% Similarity=0.321 Sum_probs=96.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCC-ccccChHHHHHHHHHHHhhhcCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKG-KKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~-~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
.|++-|+-|+|||||+||++-.++||-|.|.||-|=+++.=. ....+++..++ ..-.|.--+...+.. +...
T Consensus 111 KV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Vega---dG~e~vl~~~~s~ek~d~~ti~~~~ha----L~~~ 183 (749)
T KOG0448|consen 111 KVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGA---DGAEAVLATEGSEEKIDMKTINQLAHA----LKPD 183 (749)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeeccc---CCcceeeccCCCcccccHHHHhHHHHh----cCcc
Confidence 489999999999999999999999999999999886655322 11222333333 111232223322221 1100
Q ss_pred CCcccccCeEEEEecCCC------cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH
Q psy3395 113 NKGISNVPINLRVYSPNV------LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD 186 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~------~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~ 186 (775)
+. -...--++|+.|+- -++.|||.||+.-.+.. ..-|.++....+-+|| |+.|.+.++.+
T Consensus 184 -~~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~----------tswid~~cldaDVfVl-V~NaEntlt~s- 249 (749)
T KOG0448|consen 184 -KD-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSEL----------TSWIDSFCLDADVFVL-VVNAENTLTLS- 249 (749)
T ss_pred -cc-cCcceEEEEEecCccchhhhccceeccCCCCCCchhh----------hHHHHHHhhcCCeEEE-EecCccHhHHH-
Confidence 00 12234567777765 28999999998643221 2245566666665555 55555555433
Q ss_pred HHHHHHhcCCCCCcceeccCCCC-cccCCCCChhcHHHHHh
Q psy3395 187 ALQIAKQVDPDVLNLTLVDLPGM-TKVPIGDQPADIEYQIK 226 (775)
Q Consensus 187 ~l~lar~~DP~g~RtigVdLPGl-TK~D~~~~~~d~~~~l~ 226 (775)
..++.+.+.-. ..-|+| + .|.|....-.++.+.+.
T Consensus 250 ek~Ff~~vs~~-KpniFI----lnnkwDasase~ec~e~V~ 285 (749)
T KOG0448|consen 250 EKQFFHKVSEE-KPNIFI----LNNKWDASASEPECKEDVL 285 (749)
T ss_pred HHHHHHHhhcc-CCcEEE----EechhhhhcccHHHHHHHH
Confidence 34444444433 455666 5 77898754444544333
No 89
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.02 E-value=3e-05 Score=75.75 Aligned_cols=70 Identities=10% Similarity=0.245 Sum_probs=42.8
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH----HHHHHhcCCCCCcceecc
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA----LQIAKQVDPDVLNLTLVD 205 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~----l~lar~~DP~g~RtigVd 205 (775)
...+.++|+||... ...+...|+...+.+|++|-+.+.+ .-..+ ..+.+...-.+.+.+.|
T Consensus 49 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~v~vvd~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv- 113 (167)
T cd04160 49 NARLKFWDLGGQES-------------LRSLWDKYYAECHAIIYVIDSTDRE-RFEESKSALEKVLRNEALEGVPLLIL- 113 (167)
T ss_pred CEEEEEEECCCChh-------------hHHHHHHHhCCCCEEEEEEECchHH-HHHHHHHHHHHHHhChhhcCCCEEEE-
Confidence 35788999999632 3456778888888777765543322 11111 22222222345778889
Q ss_pred CCCCcccCCCCC
Q psy3395 206 LPGMTKVPIGDQ 217 (775)
Q Consensus 206 LPGlTK~D~~~~ 217 (775)
++|+|+.+.
T Consensus 114 ---~NK~D~~~~ 122 (167)
T cd04160 114 ---ANKQDLPDA 122 (167)
T ss_pred ---EEccccccC
Confidence 999998653
No 90
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.02 E-value=7.8e-05 Score=74.75 Aligned_cols=121 Identities=15% Similarity=0.259 Sum_probs=72.5
Q ss_pred HhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHH
Q psy3395 22 TQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRRE 101 (775)
Q Consensus 22 ~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~ 101 (775)
..+|.. ..-+.|+++|..+|||||++++|+|..+ . ....|..|..
T Consensus 11 ~~~~~~--~~~~ki~ilG~~~~GKStLi~~l~~~~~-~--~~~~T~~~~~------------------------------ 55 (190)
T cd00879 11 SSLGLY--NKEAKILFLGLDNAGKTTLLHMLKDDRL-A--QHVPTLHPTS------------------------------ 55 (190)
T ss_pred HHhhcc--cCCCEEEEECCCCCCHHHHHHHHhcCCC-c--ccCCccCcce------------------------------
Confidence 345543 5568899999999999999999998764 1 1122322210
Q ss_pred HHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC
Q psy3395 102 IEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD 181 (775)
Q Consensus 102 i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d 181 (775)
..+.+. ...+.++|+||.. ..+.+...|+...+.+|+++...+.+
T Consensus 56 -------------------~~i~~~---~~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~iilV~D~~~~~ 100 (190)
T cd00879 56 -------------------EELTIG---NIKFKTFDLGGHE-------------QARRLWKDYFPEVDGIVFLVDAADPE 100 (190)
T ss_pred -------------------EEEEEC---CEEEEEEECCCCH-------------HHHHHHHHHhccCCEEEEEEECCcHH
Confidence 111121 1357799999942 23456778999888887776544321
Q ss_pred -cc--chHHHHHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 182 -LA--TSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 182 -~~--~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+. ......+.+..+-.+.+.+.| .||.|+.+
T Consensus 101 s~~~~~~~~~~i~~~~~~~~~pvivv----~NK~Dl~~ 134 (190)
T cd00879 101 RFQESKEELDSLLSDEELANVPFLIL----GNKIDLPG 134 (190)
T ss_pred HHHHHHHHHHHHHcCccccCCCEEEE----EeCCCCCC
Confidence 11 111222222222234677888 89999864
No 91
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.02 E-value=2.7e-05 Score=76.42 Aligned_cols=113 Identities=20% Similarity=0.314 Sum_probs=67.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|||+.++|||||++++++-.| |... .+-.+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~~~~--~~~~~-------------------------------------------- 34 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-PENV--PRVLP-------------------------------------------- 34 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CccC--CCccc--------------------------------------------
Confidence 589999999999999999998776 3211 00000
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH----HHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD----ALQ 189 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~----~l~ 189 (775)
...+...+.+ ....+.++|+||... .+.+...|++..+.++|++. ++..-.... .+.
T Consensus 35 ----~~~~~~~~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~ilv~d-~~~~~s~~~~~~~~~~ 95 (166)
T cd01893 35 ----EITIPADVTP-ERVPTTIVDTSSRPQ-------------DRANLAAEIRKANVICLVYS-VDRPSTLERIRTKWLP 95 (166)
T ss_pred ----ceEeeeeecC-CeEEEEEEeCCCchh-------------hhHHHhhhcccCCEEEEEEE-CCCHHHHHHHHHHHHH
Confidence 0001111111 223678999999632 12345667777887766554 433222221 234
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.++...+ +...+.| .||+|+.+.
T Consensus 96 ~i~~~~~-~~pviiv----~nK~Dl~~~ 118 (166)
T cd01893 96 LIRRLGV-KVPIILV----GNKSDLRDG 118 (166)
T ss_pred HHHHhCC-CCCEEEE----EEchhcccc
Confidence 4555444 5678888 899999754
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.01 E-value=6e-05 Score=72.93 Aligned_cols=115 Identities=18% Similarity=0.255 Sum_probs=66.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+++|..++||||+++++++..| +.+....+. +..-
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~-~~~~----------------------------------------- 38 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKA-DSYR----------------------------------------- 38 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcch-hhEE-----------------------------------------
Confidence 589999999999999999998876 322211111 0000
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-cc-chHH-HHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LA-TSDA-LQI 190 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~-~s~~-l~l 190 (775)
..+.+ ......+.++|+||... ...+...|++..+++|+++...+.+ +. .... ..+
T Consensus 39 -------~~~~~-~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 97 (164)
T cd04139 39 -------KKVVL-DGEDVQLNILDTAGQED-------------YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQI 97 (164)
T ss_pred -------EEEEE-CCEEEEEEEEECCChhh-------------hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 00001 11223577999999532 2346677888888887776533221 00 1112 222
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+..++.....+.| +||.|+.+
T Consensus 98 ~~~~~~~~~piiiv----~NK~D~~~ 119 (164)
T cd04139 98 LRVKDDDNVPLLLV----GNKCDLED 119 (164)
T ss_pred HHhcCCCCCCEEEE----EEcccccc
Confidence 22223455677888 89999875
No 93
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.01 E-value=5.5e-05 Score=76.32 Aligned_cols=68 Identities=13% Similarity=0.221 Sum_probs=44.1
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-cc-chHHHHHHHhcCCCCCcceeccCCCC
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LA-TSDALQIAKQVDPDVLNLTLVDLPGM 209 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~-~s~~l~lar~~DP~g~RtigVdLPGl 209 (775)
.++|+|+||-. ....+...|+...+++|+++-..+.+ +. ....+..+++..+.+...+.| .
T Consensus 51 ~~~i~Dt~G~~-------------~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv----~ 113 (191)
T cd04112 51 KLQIWDTAGQE-------------RFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLL----G 113 (191)
T ss_pred EEEEEeCCCcH-------------HHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEE----E
Confidence 57899999931 23446677888888777666443321 11 122345566666767778888 8
Q ss_pred cccCCCC
Q psy3395 210 TKVPIGD 216 (775)
Q Consensus 210 TK~D~~~ 216 (775)
+|.|+..
T Consensus 114 NK~Dl~~ 120 (191)
T cd04112 114 NKADMSG 120 (191)
T ss_pred Ecccchh
Confidence 9999864
No 94
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.00 E-value=5.7e-05 Score=84.38 Aligned_cols=127 Identities=17% Similarity=0.272 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
+.-+|++||..++|||||+|+|+|..-.=++.-
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~----------------------------------------------- 209 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDI----------------------------------------------- 209 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCC-----------------------------------------------
Confidence 567899999999999999999999753211111
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH--H
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA--L 188 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~--l 188 (775)
.|.+.|.|...+. -+.-..+|||+-|+.+-..-....+--...+ ...-|... .++|.|..|...+..||. +
T Consensus 210 ---aGTTRD~I~~~~e-~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~r--t~~aI~~a-~vvllviDa~~~~~~qD~~ia 282 (444)
T COG1160 210 ---AGTTRDSIDIEFE-RDGRKYVLIDTAGIRRKGKITESVEKYSVAR--TLKAIERA-DVVLLVIDATEGISEQDLRIA 282 (444)
T ss_pred ---CCccccceeeeEE-ECCeEEEEEECCCCCcccccccceEEEeehh--hHhHHhhc-CEEEEEEECCCCchHHHHHHH
Confidence 1223344444443 2233578999999976322111000000111 12223333 467778899998888883 4
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCCh
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQP 218 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~~ 218 (775)
.++.+ .|.-.+.| +.|.|++++.
T Consensus 283 ~~i~~---~g~~~vIv----vNKWDl~~~~ 305 (444)
T COG1160 283 GLIEE---AGRGIVIV----VNKWDLVEED 305 (444)
T ss_pred HHHHH---cCCCeEEE----EEccccCCch
Confidence 44443 67888889 9999999874
No 95
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.00 E-value=8.4e-05 Score=71.50 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=67.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|+|..+|||||++++|++..| +......|..+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~-------------------------------------------- 35 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDS-------------------------------------------- 35 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHe--------------------------------------------
Confidence 489999999999999999998764 32221111100
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCcc--chHHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLA--TSDALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~--~s~~l~la 191 (775)
......+. .....+.++|+||... ...+...+++..+.+|+++...+.+.. ........
T Consensus 36 -----~~~~~~~~-~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 96 (160)
T cd00876 36 -----YRKTIVVD-GETYTLDILDTAGQEE-------------FSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQI 96 (160)
T ss_pred -----EEEEEEEC-CEEEEEEEEECCChHH-------------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 00011111 1134677999999432 345667788888877776654443211 11122223
Q ss_pred HhcCC-CCCcceeccCCCCcccCCCC
Q psy3395 192 KQVDP-DVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 r~~DP-~g~RtigVdLPGlTK~D~~~ 216 (775)
....+ .+...+.| +||.|+.+
T Consensus 97 ~~~~~~~~~p~ivv----~nK~D~~~ 118 (160)
T cd00876 97 LRVKDDEDIPIVLV----GNKCDLEN 118 (160)
T ss_pred HHhcCCCCCcEEEE----EECCcccc
Confidence 33333 45778888 89999875
No 96
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.00 E-value=3.3e-05 Score=90.94 Aligned_cols=132 Identities=20% Similarity=0.287 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
+..|-|+|+|+.++||||||++|+|..|.....|..|+-.-. .++ +.+... ..
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~-----------~~v--------~~~~~~--------~~ 54 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGA-----------TEI--------PMDVIE--------GI 54 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCe-----------eEe--------eecccc--------cc
Confidence 457999999999999999999999998765555666652100 000 000000 00
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDA 187 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~ 187 (775)
.+ ...-..++. -..+.++|+|+||.. ....|...|....+++||++ +++..+ .+.+.
T Consensus 55 ~~------~~~~~~~v~-~~~~~l~~iDTpG~e-------------~f~~l~~~~~~~aD~~IlVv-D~~~g~~~qt~e~ 113 (590)
T TIGR00491 55 CG------DLLKKFKIR-LKIPGLLFIDTPGHE-------------AFTNLRKRGGALADLAILIV-DINEGFKPQTQEA 113 (590)
T ss_pred cc------ccccccccc-cccCcEEEEECCCcH-------------hHHHHHHHHHhhCCEEEEEE-ECCcCCCHhHHHH
Confidence 00 000001111 123469999999942 23446667887778776654 454433 23344
Q ss_pred HHHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 188 l~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+.+++.. +...+.| +||+|+.+
T Consensus 114 i~~l~~~---~vpiIVv----~NK~Dl~~ 135 (590)
T TIGR00491 114 LNILRMY---KTPFVVA----ANKIDRIP 135 (590)
T ss_pred HHHHHHc---CCCEEEE----EECCCccc
Confidence 5555543 5678888 99999874
No 97
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.98 E-value=8.1e-05 Score=75.93 Aligned_cols=24 Identities=29% Similarity=0.812 Sum_probs=22.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|+|||++++||||+++.+++..|
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f 25 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF 25 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Confidence 589999999999999999998876
No 98
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.98 E-value=4.3e-05 Score=75.53 Aligned_cols=116 Identities=17% Similarity=0.288 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
-.-+.|+++|..++|||||+++|+|..+ +. ..|+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~------~~~t--------------------------------------- 45 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DT------ISPT--------------------------------------- 45 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CC------cCCc---------------------------------------
Confidence 3457899999999999999999998743 21 0110
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch-HH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS-DA 187 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s-~~ 187 (775)
.++... .+.+ +...+.++|+||.. ..+.+...|+.+.+++|+++...+.+ +.+. ..
T Consensus 46 ----~g~~~~--~~~~---~~~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 103 (173)
T cd04154 46 ----LGFQIK--TLEY---EGYKLNIWDVGGQK-------------TLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRE 103 (173)
T ss_pred ----cccceE--EEEE---CCEEEEEEECCCCH-------------HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHH
Confidence 000000 1111 12467899999942 24557788998888887766544331 1111 11
Q ss_pred H-HHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 188 L-QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 188 l-~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+ .+.+.....+...+.| .||.|+.+.
T Consensus 104 ~~~~~~~~~~~~~p~iiv----~nK~Dl~~~ 130 (173)
T cd04154 104 LKELLQEERLAGATLLIL----ANKQDLPGA 130 (173)
T ss_pred HHHHHhChhhcCCCEEEE----EECcccccC
Confidence 1 1212112234677888 899998753
No 99
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.98 E-value=6.6e-05 Score=72.41 Aligned_cols=116 Identities=17% Similarity=0.234 Sum_probs=68.4
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
..|+|+|+.++||||+++++++..|...-. .|-... +
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~--~t~~~~----------~------------------------------- 38 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYD--PTIEDS----------Y------------------------------- 38 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcC--Ccchhe----------E-------------------------------
Confidence 369999999999999999999877632111 110000 0
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch-HH-HH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS-DA-LQ 189 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s-~~-l~ 189 (775)
...+.+.+ ....+.++|+||.. ..+.+...|+.+.+++++++...+.+ +.+. .. ..
T Consensus 39 -------~~~~~~~~-~~~~~~i~Dt~G~~-------------~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~ 97 (162)
T cd04138 39 -------RKQVVIDG-ETCLLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQ 97 (162)
T ss_pred -------EEEEEECC-EEEEEEEEECCCCc-------------chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 00111111 12346789999942 24567888999988887776543321 1111 11 22
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+.+..+..+...+.| .||.|+.+
T Consensus 98 i~~~~~~~~~piivv----~nK~Dl~~ 120 (162)
T cd04138 98 IKRVKDSDDVPMVLV----GNKCDLAA 120 (162)
T ss_pred HHHhcCCCCCCEEEE----EECccccc
Confidence 233334445677888 89999875
No 100
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.97 E-value=5.4e-05 Score=76.00 Aligned_cols=112 Identities=15% Similarity=0.253 Sum_probs=68.6
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
+.|+++|..++||||+++.++|..|- . ...|+.|..-
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~-~--~~~t~~~~~~---------------------------------------- 54 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLA-Q--HQPTQHPTSE---------------------------------------- 54 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-c--cCCccccceE----------------------------------------
Confidence 78999999999999999999987641 1 1122222100
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--HHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--DALQ 189 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~~l~ 189 (775)
.+.+ ....+.++|+||... .+.+...|+.+.+.+|++|-..+.+ +... ...+
T Consensus 55 ---------~~~~---~~~~~~~~D~~G~~~-------------~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~ 109 (184)
T smart00178 55 ---------ELAI---GNIKFTTFDLGGHQQ-------------ARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDA 109 (184)
T ss_pred ---------EEEE---CCEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHH
Confidence 0111 123578999999632 3556778999999888876554432 1111 1122
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+.+...-.+...+.| +||.|+..
T Consensus 110 l~~~~~~~~~piliv----~NK~Dl~~ 132 (184)
T smart00178 110 LLSDEELATVPFLIL----GNKIDAPY 132 (184)
T ss_pred HHcChhhcCCCEEEE----EeCccccC
Confidence 222111235678888 89999853
No 101
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.97 E-value=4.5e-05 Score=73.94 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=22.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+|+++|..++||||+++++++..|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~ 24 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL 24 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc
Confidence 589999999999999999999875
No 102
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.97 E-value=2.1e-05 Score=77.15 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.3
Q ss_pred EEcCCCCchHHHHHHhhCCCC
Q psy3395 37 VVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 37 VvG~qSsGKSSvLeal~G~~f 57 (775)
++|.+++||||+|++|+|..+
T Consensus 1 iiG~~~~GKStll~~l~~~~~ 21 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP 21 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc
Confidence 589999999999999999864
No 103
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.96 E-value=9.5e-05 Score=71.92 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=22.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+|+|+|+.++||||+++++++..|
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~ 25 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF 25 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 589999999999999999998876
No 104
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.96 E-value=4.7e-05 Score=92.23 Aligned_cols=126 Identities=19% Similarity=0.210 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCc-cccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFL-PRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~fl-Pr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
+.|.|++||..++|||||+++|+|..+. +......||-+..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~-------------------------------------- 490 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVD-------------------------------------- 490 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcce--------------------------------------
Confidence 5689999999999999999999997642 1111223332110
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHH-HHHHhhccccEEEEEecCCCCccchHHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDM-LFQFITKETCLILAVTPANTDLATSDAL 188 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~l-v~~yi~~~~~iILaV~~a~~d~~~s~~l 188 (775)
..+++. ...++|+|+||+.+-.... ...+....+ ...++...+.+|+ |..++.....++ +
T Consensus 491 -----------~~~~~~---~~~~~liDTaG~~~~~~~~---~~~e~~~~~r~~~~i~~advvil-ViDat~~~s~~~-~ 551 (712)
T PRK09518 491 -----------EIVEID---GEDWLFIDTAGIKRRQHKL---TGAEYYSSLRTQAAIERSELALF-LFDASQPISEQD-L 551 (712)
T ss_pred -----------eEEEEC---CCEEEEEECCCcccCcccc---hhHHHHHHHHHHHHhhcCCEEEE-EEECCCCCCHHH-H
Confidence 011221 2246799999986421111 101112222 2455666666654 556666555544 3
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.++..+...|...+.| +||+|+.+.
T Consensus 552 ~i~~~~~~~~~piIiV----~NK~DL~~~ 576 (712)
T PRK09518 552 KVMSMAVDAGRALVLV----FNKWDLMDE 576 (712)
T ss_pred HHHHHHHHcCCCEEEE----EEchhcCCh
Confidence 3444444457788899 999999753
No 105
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.95 E-value=3.9e-05 Score=93.07 Aligned_cols=121 Identities=18% Similarity=0.276 Sum_probs=68.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
..|++||..++||||++|+|+|..+ ..+.- .+|.-
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve------------------------------------------- 39 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVE------------------------------------------- 39 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEe-------------------------------------------
Confidence 4799999999999999999999764 22221 11110
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhh--ccccEEEEEecCCCCccchHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFIT--KETCLILAVTPANTDLATSDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iILaV~~a~~d~~~s~~l~ 189 (775)
..+..+.. +-..+.+|||||+........+...++. +...|+. .++ +++.|++|+.--.+ +.
T Consensus 40 --------~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~---i~~~~l~~~~aD-~vI~VvDat~ler~---l~ 103 (772)
T PRK09554 40 --------RKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQ---IACHYILSGDAD-LLINVVDASNLERN---LY 103 (772)
T ss_pred --------eEEEEEEc-CceEEEEEECCCccccccccccccHHHH---HHHHHHhccCCC-EEEEEecCCcchhh---HH
Confidence 00111111 1235789999998654321111222222 3455654 444 45566666542122 22
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+..++.-.|.+++.| +||.|+.++
T Consensus 104 l~~ql~e~giPvIvV----lNK~Dl~~~ 127 (772)
T PRK09554 104 LTLQLLELGIPCIVA----LNMLDIAEK 127 (772)
T ss_pred HHHHHHHcCCCEEEE----EEchhhhhc
Confidence 333333357889999 999998743
No 106
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.94 E-value=7.8e-05 Score=72.28 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=22.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|+|+|..++||||++++|++..|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~ 25 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTF 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998876
No 107
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.89 E-value=6.8e-05 Score=72.82 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=41.8
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-c--cchHHHHHHHhcCCCCCcceeccCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-L--ATSDALQIAKQVDPDVLNLTLVDLP 207 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~--~~s~~l~lar~~DP~g~RtigVdLP 207 (775)
..+.++|+||... .+.+...|+...+.+|+++-..+.. + .......+.+...-.+...+.|
T Consensus 43 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv--- 106 (158)
T cd04151 43 LKFQVWDLGGQTS-------------IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVF--- 106 (158)
T ss_pred EEEEEEECCCCHH-------------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEE---
Confidence 3578999999632 3456778898888887766433321 1 1112223333322235677888
Q ss_pred CCcccCCCC
Q psy3395 208 GMTKVPIGD 216 (775)
Q Consensus 208 GlTK~D~~~ 216 (775)
+||.|+.+
T Consensus 107 -~nK~Dl~~ 114 (158)
T cd04151 107 -ANKQDMPG 114 (158)
T ss_pred -EeCCCCCC
Confidence 89999864
No 108
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.88 E-value=0.00015 Score=77.44 Aligned_cols=128 Identities=21% Similarity=0.298 Sum_probs=69.1
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNK 114 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~ 114 (775)
|++||..+||||||+|+|.+.. |...|... + ..|....|++... .+ + | .
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~~------g~~~~~g~-v--------------~~g~~~~d~~~~e--~~----r--~--~ 50 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYAT------GAIDRLGS-V--------------EDGTTVSDYDPEE--IK----R--K--M 50 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCccCCe-e--------------cCCcccCCCCHHH--Hh----h--c--c
Confidence 8999999999999999998643 22222110 0 0111222333211 11 0 1 1
Q ss_pred cccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc--hHHHHHHH
Q psy3395 115 GISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT--SDALQIAK 192 (775)
Q Consensus 115 ~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~--s~~l~lar 192 (775)
.+......++. .-..++|+|+||... ....+..++...+++|++| .+...... ...++.++
T Consensus 51 ti~~~~~~~~~---~~~~i~liDtPG~~~-------------f~~~~~~~l~~aD~~i~Vv-d~~~g~~~~~~~~~~~~~ 113 (268)
T cd04170 51 SISTSVAPLEW---KGHKINLIDTPGYAD-------------FVGETRAALRAADAALVVV-SAQSGVEVGTEKLWEFAD 113 (268)
T ss_pred cccceeEEEEE---CCEEEEEEECcCHHH-------------HHHHHHHHHHHCCEEEEEE-eCCCCCCHHHHHHHHHHH
Confidence 11222233333 235789999999632 1234566777777766655 44443222 23344443
Q ss_pred hcCCCCCcceeccCCCCcccCCCCC
Q psy3395 193 QVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 193 ~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
. .+...+.| +||+|+...
T Consensus 114 ~---~~~p~iiv----vNK~D~~~~ 131 (268)
T cd04170 114 E---AGIPRIIF----INKMDRERA 131 (268)
T ss_pred H---cCCCEEEE----EECCccCCC
Confidence 3 45677788 999998754
No 109
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.87 E-value=9.8e-05 Score=75.11 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
...|+|||+.++||||+++.+.+..|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~ 31 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF 31 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999998775
No 110
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.87 E-value=0.00011 Score=72.11 Aligned_cols=26 Identities=31% Similarity=0.652 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
-.+|+++|.++|||||++++|+|..+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~ 39 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDI 39 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCC
Confidence 57799999999999999999999754
No 111
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.87 E-value=3.5e-05 Score=77.61 Aligned_cols=68 Identities=29% Similarity=0.448 Sum_probs=43.9
Q ss_pred cCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCcc--chHHHHHHHhcCCCCCcceec
Q psy3395 127 SPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLA--TSDALQIAKQVDPDVLNLTLV 204 (775)
Q Consensus 127 ~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~--~s~~l~lar~~DP~g~RtigV 204 (775)
......++|+|+||.. ..+.++. .-+...+++||+ ++|+..+. +.+.+..++.. +.+.+.|
T Consensus 66 ~~~~~~i~~iDtPG~~------------~f~~~~~-~~~~~~D~ailv-Vda~~g~~~~~~~~l~~~~~~---~~p~ivv 128 (188)
T PF00009_consen 66 NENNRKITLIDTPGHE------------DFIKEMI-RGLRQADIAILV-VDANDGIQPQTEEHLKILREL---GIPIIVV 128 (188)
T ss_dssp TESSEEEEEEEESSSH------------HHHHHHH-HHHTTSSEEEEE-EETTTBSTHHHHHHHHHHHHT---T-SEEEE
T ss_pred cccccceeeccccccc------------ceeeccc-ceecccccceee-eeccccccccccccccccccc---ccceEEe
Confidence 4566789999999942 1233333 447777776555 45554443 33457777664 4458888
Q ss_pred cCCCCcccCCC
Q psy3395 205 DLPGMTKVPIG 215 (775)
Q Consensus 205 dLPGlTK~D~~ 215 (775)
+||+|+.
T Consensus 129 ----lNK~D~~ 135 (188)
T PF00009_consen 129 ----LNKMDLI 135 (188)
T ss_dssp ----EETCTSS
T ss_pred ----eeeccch
Confidence 9999998
No 112
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.87 E-value=0.00018 Score=69.78 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..|+|||+.++|||||++.+++-.|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~ 26 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF 26 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4799999999999999999997765
No 113
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.86 E-value=9.4e-05 Score=72.95 Aligned_cols=69 Identities=12% Similarity=0.226 Sum_probs=44.3
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH---HHHHHH-hcCCCCCcceeccC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD---ALQIAK-QVDPDVLNLTLVDL 206 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~---~l~lar-~~DP~g~RtigVdL 206 (775)
..+.++|+||-. ..+.+...|+.+.+.+|+++-..+.+ .-.+ .+.-.. .....+...+.|
T Consensus 43 ~~~~i~D~~G~~-------------~~~~~~~~~~~~a~~ii~V~D~s~~~-s~~~~~~~l~~l~~~~~~~~~piliv-- 106 (167)
T cd04161 43 YEVCIFDLGGGA-------------NFRGIWVNYYAEAHGLVFVVDSSDDD-RVQEVKEILRELLQHPRVSGKPILVL-- 106 (167)
T ss_pred EEEEEEECCCcH-------------HHHHHHHHHHcCCCEEEEEEECCchh-HHHHHHHHHHHHHcCccccCCcEEEE--
Confidence 468899999942 34667889999999888876554432 1122 222222 222245677888
Q ss_pred CCCcccCCCCC
Q psy3395 207 PGMTKVPIGDQ 217 (775)
Q Consensus 207 PGlTK~D~~~~ 217 (775)
.+|.|+.+.
T Consensus 107 --~NK~Dl~~~ 115 (167)
T cd04161 107 --ANKQDKKNA 115 (167)
T ss_pred --EeCCCCcCC
Confidence 899998753
No 114
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.86 E-value=9e-05 Score=70.54 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=21.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|++||+.++|||||+++++|..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 589999999999999999998653
No 115
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.86 E-value=0.00015 Score=76.15 Aligned_cols=127 Identities=17% Similarity=0.225 Sum_probs=70.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNK 114 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~ 114 (775)
|+++|..++|||||+|+|+... |...|.- .. ..+..+.|+... +.+. | .
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~------g~i~~~g------~v---------~~~~~~~D~~~~--e~~r------g--~ 50 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTS------GAIRKLG------SV---------DKGTTRTDTMEL--ERQR------G--I 50 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHc------CCccccc------cc---------cCCcccCCCchh--HhhC------C--C
Confidence 7999999999999999998642 2222210 00 001122233221 1110 1 1
Q ss_pred cccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHHH
Q psy3395 115 GISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIAK 192 (775)
Q Consensus 115 ~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~lar 192 (775)
.+......++. .-..++|+|+||... ....+..|++..+++|+.|. +......+ .....++
T Consensus 51 ti~~~~~~~~~---~~~~i~liDTPG~~~-------------f~~~~~~~l~~aD~~IlVvd-~~~g~~~~~~~~~~~~~ 113 (237)
T cd04168 51 TIFSAVASFQW---EDTKVNLIDTPGHMD-------------FIAEVERSLSVLDGAILVIS-AVEGVQAQTRILWRLLR 113 (237)
T ss_pred ceeeeeEEEEE---CCEEEEEEeCCCccc-------------hHHHHHHHHHHhCeEEEEEe-CCCCCCHHHHHHHHHHH
Confidence 12222233332 234789999999743 12345678888887777654 44444322 2444444
Q ss_pred hcCCCCCcceeccCCCCcccCCCC
Q psy3395 193 QVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 193 ~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
. .+.+.+.| ++|.|+..
T Consensus 114 ~---~~~P~iiv----vNK~D~~~ 130 (237)
T cd04168 114 K---LNIPTIIF----VNKIDRAG 130 (237)
T ss_pred H---cCCCEEEE----EECccccC
Confidence 4 45677888 99999874
No 116
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.86 E-value=0.00011 Score=78.61 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=42.9
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHHHhcCCCCCcceeccCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIAKQVDPDVLNLTLVDLP 207 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~lar~~DP~g~RtigVdLP 207 (775)
-..++|||+||... ...-+..++...+++|+. ++|...+..+ ..++.++. .+.+.++|
T Consensus 63 ~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~ailV-VDa~~g~~~~t~~~~~~~~~---~~~p~ivv--- 122 (270)
T cd01886 63 DHRINIIDTPGHVD-------------FTIEVERSLRVLDGAVAV-FDAVAGVEPQTETVWRQADR---YNVPRIAF--- 122 (270)
T ss_pred CEEEEEEECCCcHH-------------HHHHHHHHHHHcCEEEEE-EECCCCCCHHHHHHHHHHHH---cCCCEEEE---
Confidence 34788999999642 112356777778877664 5565544333 34555544 45677889
Q ss_pred CCcccCCCC
Q psy3395 208 GMTKVPIGD 216 (775)
Q Consensus 208 GlTK~D~~~ 216 (775)
++|+|+.+
T Consensus 123 -iNK~D~~~ 130 (270)
T cd01886 123 -VNKMDRTG 130 (270)
T ss_pred -EECCCCCC
Confidence 99999875
No 117
>KOG1423|consensus
Probab=97.85 E-value=5.9e-05 Score=79.79 Aligned_cols=127 Identities=18% Similarity=0.298 Sum_probs=80.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc-ccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV-TRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~-TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
+|+|||..++|||+|.|.++|.++.|+..-.- ||+- +.|
T Consensus 74 ~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~---------------------------------------ilg- 113 (379)
T KOG1423|consen 74 YVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHR---------------------------------------ILG- 113 (379)
T ss_pred EEEEEcCCCcchhhhhhHhhCCccccccccccceeee---------------------------------------eeE-
Confidence 69999999999999999999999988777643 3431 111
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCC-CCccchHHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPAN-TDLATSDALQIA 191 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~-~d~~~s~~l~la 191 (775)
|....-..|.|+|+||+..-....+...+.. +..=..+-+.+.++++..|-..+ ...-+..+|.+.
T Consensus 114 ------------i~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s-~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l 180 (379)
T KOG1423|consen 114 ------------IITSGETQLVFYDTPGLVSKKMHRRHHLMMS-VLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHML 180 (379)
T ss_pred ------------EEecCceEEEEecCCcccccchhhhHHHHHH-hhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHH
Confidence 2223455799999999975332222111111 11123344556676655544332 344556678888
Q ss_pred HhcCCCCCcceeccCCCCcccCCCCChh
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGDQPA 219 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~~~~ 219 (775)
+++.- ...+.| +.|+|...+-.
T Consensus 181 ~~ys~--ips~lv----mnkid~~k~k~ 202 (379)
T KOG1423|consen 181 EEYSK--IPSILV----MNKIDKLKQKR 202 (379)
T ss_pred HHHhc--CCceee----ccchhcchhhh
Confidence 77653 456889 99999886643
No 118
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.85 E-value=4.4e-05 Score=82.16 Aligned_cols=138 Identities=22% Similarity=0.310 Sum_probs=71.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|.|||..|+||||++++|.+..+.+......+.. + + . ...
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~------------~----~----------------------~-~~~ 46 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPS------------A----S----------------------I-SRT 46 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S---------------------------------------------SC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccccccccccc------------c----c----------------------c-ccc
Confidence 48999999999999999999987655441111100 0 0 0 000
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCC-CCCcccHHHHHHHHHHHHhhcc-------------ccEEEEEecCC
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPV-GDQPIDIEQQIKDMLFQFITKE-------------TCLILAVTPAN 179 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~-~~q~~di~~~i~~lv~~yi~~~-------------~~iILaV~~a~ 179 (775)
..+......++- .--..+|++||+||+...-. ......|..-|.+--..|+..+ +|.+..+.|..
T Consensus 47 ~~i~~~~~~l~e-~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~ 125 (281)
T PF00735_consen 47 LEIEERTVELEE-NGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG 125 (281)
T ss_dssp EEEEEEEEEEEE-TCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS
T ss_pred cceeeEEEEecc-CCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC
Confidence 001111111111 11234899999999864311 1222344445555555666432 45555666655
Q ss_pred CCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 180 TDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 180 ~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
..+...|+ ...|++... -..|-| |+|.|.+..
T Consensus 126 ~~L~~~Di-~~mk~Ls~~-vNvIPv----IaKaD~lt~ 157 (281)
T PF00735_consen 126 HGLKPLDI-EFMKRLSKR-VNVIPV----IAKADTLTP 157 (281)
T ss_dssp SSS-HHHH-HHHHHHTTT-SEEEEE----ESTGGGS-H
T ss_pred ccchHHHH-HHHHHhccc-ccEEeE----EecccccCH
Confidence 66766665 455666654 467888 999999864
No 119
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.84 E-value=0.00031 Score=73.60 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
++++||..|+|||||+++|+|..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~ 24 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK 24 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999975
No 120
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.83 E-value=0.00021 Score=69.67 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=66.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|+|+.++||||++++++.-.|.+.-. ..++..
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~~~~~~~-~t~~~~-------------------------------------------- 37 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGIFVEKYD-PTIEDS-------------------------------------------- 37 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccC-Ccchhe--------------------------------------------
Confidence 69999999999999999998654422111 111100
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~la 191 (775)
+ ...+.+. .....|.++|+||..+ .+.+...|++..+++|+++...+.. +.. .+.+...
T Consensus 38 --~---~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i 98 (164)
T cd04175 38 --Y---RKQVEVD-GQQCMLEILDTAGTEQ-------------FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQI 98 (164)
T ss_pred --E---EEEEEEC-CEEEEEEEEECCCccc-------------chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 0 0122222 1235678999999532 3446777889999988876543221 111 1122222
Q ss_pred Hh-cCCCCCcceeccCCCCcccCCCC
Q psy3395 192 KQ-VDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 r~-~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+ ....+...+.| .||.|+.+
T Consensus 99 ~~~~~~~~~piilv----~nK~Dl~~ 120 (164)
T cd04175 99 LRVKDTEDVPMILV----GNKCDLED 120 (164)
T ss_pred HHhcCCCCCCEEEE----EECCcchh
Confidence 22 23345567888 89999864
No 121
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.83 E-value=0.00024 Score=75.94 Aligned_cols=133 Identities=15% Similarity=0.292 Sum_probs=71.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
-|++||..+||||||+|+|+... |...|...+ .-. ...+....|+... +.+ + |
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~------g~i~~~g~v-~~~----------~~~~~t~~D~~~~--e~~----r--g-- 56 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFG------GAIREAGAV-KAR----------KSRKHATSDWMEI--EKQ----R--G-- 56 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhc------CCcccCcee-ccc----------ccCCCccCCCcHH--HHh----C--C--
Confidence 38999999999999999998542 222222110 000 0011122343321 111 1 1
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~la 191 (775)
-.++.....++. .-..+.|+|+||... ....+..++...+++|+++ ++...+..+ .+++.+
T Consensus 57 ~si~~~~~~~~~---~~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~IlVv-da~~g~~~~~~~i~~~~ 119 (267)
T cd04169 57 ISVTSSVMQFEY---RDCVINLLDTPGHED-------------FSEDTYRTLTAVDSAVMVI-DAAKGVEPQTRKLFEVC 119 (267)
T ss_pred CCeEEEEEEEee---CCEEEEEEECCCchH-------------HHHHHHHHHHHCCEEEEEE-ECCCCccHHHHHHHHHH
Confidence 122222333333 235789999999632 1224566777788887755 454444322 334444
Q ss_pred HhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+. .+...+.| ++|+|+...
T Consensus 120 ~~---~~~P~iiv----vNK~D~~~a 138 (267)
T cd04169 120 RL---RGIPIITF----INKLDREGR 138 (267)
T ss_pred Hh---cCCCEEEE----EECCccCCC
Confidence 33 45677888 899998653
No 122
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.82 E-value=0.00013 Score=67.97 Aligned_cols=71 Identities=11% Similarity=0.196 Sum_probs=42.3
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHH----HHHHhcCCCCCcceecc
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDAL----QIAKQVDPDVLNLTLVD 205 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l----~lar~~DP~g~RtigVd 205 (775)
...++++|+||.... ......++.+.+.+|+++. ++......+.. .........+...++|
T Consensus 44 ~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv- 108 (157)
T cd00882 44 KVKLQIWDTAGQERF-------------RSLRRLYYRGADGIILVYD-VTDRESFENVKEWLLLILINKEGENIPIILV- 108 (157)
T ss_pred EEEEEEEecCChHHH-------------HhHHHHHhcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhhccCCCcEEEE-
Confidence 346889999996532 1223667777776666554 44332222221 2223334456788999
Q ss_pred CCCCcccCCCCCh
Q psy3395 206 LPGMTKVPIGDQP 218 (775)
Q Consensus 206 LPGlTK~D~~~~~ 218 (775)
+||.|+.+..
T Consensus 109 ---~nk~D~~~~~ 118 (157)
T cd00882 109 ---GNKIDLPEER 118 (157)
T ss_pred ---Eecccccccc
Confidence 9999987643
No 123
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.82 E-value=0.00018 Score=73.89 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=45.7
Q ss_pred cccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--HHHHHH
Q psy3395 115 GISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--ALQIAK 192 (775)
Q Consensus 115 ~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~l~lar 192 (775)
+++.+.....+. .+-..+.|+|+||... ...+ +..++...+.+|++ +++...+..++ ...+++
T Consensus 62 g~T~~~~~~~~~-~~~~~~~liDTpG~~~------------~~~~-~~~~~~~ad~~llV-vD~~~~~~~~~~~~~~~~~ 126 (208)
T cd04166 62 GITIDVAYRYFS-TPKRKFIIADTPGHEQ------------YTRN-MVTGASTADLAILL-VDARKGVLEQTRRHSYILS 126 (208)
T ss_pred CcCeecceeEEe-cCCceEEEEECCcHHH------------HHHH-HHHhhhhCCEEEEE-EECCCCccHhHHHHHHHHH
Confidence 344444444433 2345789999999521 2223 33456667766555 45554443322 344555
Q ss_pred hcCCCCCcceeccCCCCcccCCCCC
Q psy3395 193 QVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 193 ~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
... ..+.|.| +||+|+.+.
T Consensus 127 ~~~--~~~iIvv----iNK~D~~~~ 145 (208)
T cd04166 127 LLG--IRHVVVA----VNKMDLVDY 145 (208)
T ss_pred HcC--CCcEEEE----EEchhcccC
Confidence 432 1357778 899999754
No 124
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.81 E-value=0.00013 Score=71.29 Aligned_cols=114 Identities=18% Similarity=0.284 Sum_probs=67.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|||+.++|||||++.+++..|-|... .|..+ .+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~---~~~-------------------------------------- 38 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQL--STYAL---TLY-------------------------------------- 38 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcC--Cceee---EEE--------------------------------------
Confidence 58999999999999999999877633221 11100 000
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-c-chHHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-A-TSDALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-~-~s~~l~la 191 (775)
...+.+.+ ....+.+.|+||-. ..+.+...|+.+.+.+|+++-..+.+- . -...+...
T Consensus 39 ------~~~~~~~~-~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 98 (161)
T cd04124 39 ------KHNAKFEG-KTILVDFWDTAGQE-------------RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEEL 98 (161)
T ss_pred ------EEEEEECC-EEEEEEEEeCCCch-------------hhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 00011111 12357799999942 245578889999988877665433211 1 12234444
Q ss_pred HhcCCCCCcceeccCCCCcccCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIG 215 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~ 215 (775)
++..|. ...+.| .||.|+.
T Consensus 99 ~~~~~~-~p~ivv----~nK~Dl~ 117 (161)
T cd04124 99 REYRPE-IPCIVV----ANKIDLD 117 (161)
T ss_pred HHhCCC-CcEEEE----EECccCc
Confidence 554443 577788 8999984
No 125
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.80 E-value=0.00015 Score=71.22 Aligned_cols=26 Identities=31% Similarity=0.648 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+-+|+|||+.++||||+++.+++..|
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~ 30 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKF 30 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35799999999999999999998776
No 126
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.80 E-value=0.00015 Score=74.20 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.|+++|..++|||||+++|+|.. +++..+-
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~-~~~~~~e 31 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVW-TVRFKEE 31 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCCCCee
Confidence 37899999999999999999873 3444433
No 127
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.79 E-value=0.00021 Score=71.73 Aligned_cols=117 Identities=12% Similarity=0.204 Sum_probs=68.5
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
..|+|+|+.++||||+++.+++..|-+... .|-- ..+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~--~t~~---~~~-------------------------------------- 37 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK--STIG---VDF-------------------------------------- 37 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--Ccee---eEE--------------------------------------
Confidence 369999999999999999999887622111 0100 000
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-c-chHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-A-TSDALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-~-~s~~l~l 190 (775)
....+.+.+ ....+.+.|+||.. ..+.+...|+++.+++|+++...+.+- . -...+..
T Consensus 38 ------~~~~~~~~~-~~~~~~i~Dt~g~~-------------~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~ 97 (188)
T cd04125 38 ------KIKTVYIEN-KIIKLQIWDTNGQE-------------RFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINE 97 (188)
T ss_pred ------EEEEEEECC-EEEEEEEEECCCcH-------------HHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHH
Confidence 000111111 13467899999942 234467888888888887766443221 0 1112333
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+...+.....++| .||.|+.+
T Consensus 98 i~~~~~~~~~~ivv----~nK~Dl~~ 119 (188)
T cd04125 98 INRYARENVIKVIV----ANKSDLVN 119 (188)
T ss_pred HHHhCCCCCeEEEE----EECCCCcc
Confidence 44444444567778 89999874
No 128
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.79 E-value=0.0001 Score=72.74 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+||+||..++||||+++++++..|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~ 24 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF 24 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC
Confidence 489999999999999999998754
No 129
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.78 E-value=0.00017 Score=74.17 Aligned_cols=25 Identities=36% Similarity=0.642 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..|+|||+.++||||+|+.+++..|
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~ 27 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRF 27 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3699999999999999999998876
No 130
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.78 E-value=0.00016 Score=71.13 Aligned_cols=111 Identities=21% Similarity=0.299 Sum_probs=66.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
||++||++++||||++..+++..| +.. -.|+. |
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~-----~~pt~---------------------------------------g-- 33 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LES-----VVPTT---------------------------------------G-- 33 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-ccc-----ccccC---------------------------------------C--
Confidence 799999999999999999998765 211 01110 0
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH---HHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA---LQI 190 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~---l~l 190 (775)
+. .+ .+... -..|.+.|+||-.. .+.+...|+++.+++|+++-..+.. .-..+ +.-
T Consensus 34 --~~--~~--~i~~~-~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii~V~D~t~~~-s~~~~~~~l~~ 92 (164)
T cd04162 34 --FN--SV--AIPTQ-DAIMELLEIGGSQN-------------LRKYWKRYLSGSQGLIFVVDSADSE-RLPLARQELHQ 92 (164)
T ss_pred --cc--eE--EEeeC-CeEEEEEECCCCcc-------------hhHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHH
Confidence 00 01 11111 24688999999532 2446678999999888776544322 11111 121
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+.... .+...+.| .+|.|+.+.
T Consensus 93 ~~~~~-~~~piilv----~NK~Dl~~~ 114 (164)
T cd04162 93 LLQHP-PDLPLVVL----ANKQDLPAA 114 (164)
T ss_pred HHhCC-CCCcEEEE----EeCcCCcCC
Confidence 22112 45778888 899998643
No 131
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.77 E-value=0.00011 Score=75.15 Aligned_cols=116 Identities=15% Similarity=0.284 Sum_probs=70.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
||||||+.++||||++..+++-.|-+ .. . |+. |
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~-~~-~----~Ti---------------------------------------~-- 34 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCE-AC-K----SGV---------------------------------------G-- 34 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC-cC-C----Ccc---------------------------------------e--
Confidence 79999999999999999999877621 11 0 100 0
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~la 191 (775)
.++.. -.+.+.+ ....|.+.|++|-. ..+.+...|+++.+++||++...+.+ +.+ ...+..+
T Consensus 35 ~~~~~--~~i~~~~-~~v~l~iwDtaGqe-------------~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i 98 (202)
T cd04120 35 VDFKI--KTVELRG-KKIRLQIWDTAGQE-------------RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI 98 (202)
T ss_pred eEEEE--EEEEECC-EEEEEEEEeCCCch-------------hhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 00000 0112211 23567899999942 34668889999999998866543322 111 1234445
Q ss_pred HhcCCCCCcceeccCCCCcccCCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
++..+.+...+.| -+|.|+.+
T Consensus 99 ~~~~~~~~piilV----gNK~DL~~ 119 (202)
T cd04120 99 DKYASEDAELLLV----GNKLDCET 119 (202)
T ss_pred HHhCCCCCcEEEE----EECccccc
Confidence 5554555667777 79999853
No 132
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.77 E-value=0.00014 Score=73.34 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.|+++|+.++|||||+++|++.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~ 23 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEI 23 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhc
Confidence 5899999999999999999975
No 133
>PLN03108 Rab family protein; Provisional
Probab=97.77 E-value=0.00022 Score=73.25 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=23.9
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCcc
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLP 59 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flP 59 (775)
-.|||||+.++|||||++.|++..|-+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~ 33 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP 33 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 469999999999999999999987633
No 134
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.76 E-value=0.00014 Score=87.37 Aligned_cols=118 Identities=15% Similarity=0.288 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
-..|.|+|+|..++||||||++|.+..|.....+..|.-.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i---------------------------------------- 281 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKI---------------------------------------- 281 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCcccccc----------------------------------------
Confidence 3668999999999999999999998765221112222100
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDA 187 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~ 187 (775)
....+.+.. ......++|+|+||.. ....|...++...+.+||+| +|+... .+-++
T Consensus 282 -------~~~~v~~~~-~~~~~kItfiDTPGhe-------------~F~~mr~rg~~~aDiaILVV-DA~dGv~~QT~E~ 339 (742)
T CHL00189 282 -------GAYEVEFEY-KDENQKIVFLDTPGHE-------------AFSSMRSRGANVTDIAILII-AADDGVKPQTIEA 339 (742)
T ss_pred -------ceEEEEEEe-cCCceEEEEEECCcHH-------------HHHHHHHHHHHHCCEEEEEE-ECcCCCChhhHHH
Confidence 000011111 0123578999999942 34557778888888777766 454433 23345
Q ss_pred HHHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 188 l~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+..++. .+.+.|.| +||+|+.+
T Consensus 340 I~~~k~---~~iPiIVV----iNKiDl~~ 361 (742)
T CHL00189 340 INYIQA---ANVPIIVA----INKIDKAN 361 (742)
T ss_pred HHHHHh---cCceEEEE----EECCCccc
Confidence 555543 45678889 99999875
No 135
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.75 E-value=0.00043 Score=67.91 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
+|++||..++|||||+++|.|.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~ 24 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGN 24 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6999999999999999999985
No 136
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.74 E-value=0.00027 Score=69.19 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=22.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+|++||+.++||||+++++++-.|
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f 26 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTF 26 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999998876
No 137
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.74 E-value=0.00034 Score=69.29 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCc
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFL 58 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~fl 58 (775)
..|+|||+.++|||||+..+++..|.
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~ 30 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFN 30 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57999999999999999999998773
No 138
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.74 E-value=0.00023 Score=70.67 Aligned_cols=115 Identities=20% Similarity=0.295 Sum_probs=68.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|||+.++|||||+..+.+..| |... ..|- |
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f-~~~~-~~t~-------------------------------------------~-- 36 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF-PDYH-DPTI-------------------------------------------E-- 36 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCc-CCcc-------------------------------------------c--
Confidence 589999999999999999998776 3211 0010 0
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~la 191 (775)
..+ ...+.+.+ ....|.|.|+||.. ..+.|...|+...+++|+++...+.+ +.+ .+.....
T Consensus 37 ~~~---~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i 99 (172)
T cd04141 37 DAY---KQQARIDN-EPALLDILDTAGQA-------------EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLI 99 (172)
T ss_pred ceE---EEEEEECC-EEEEEEEEeCCCch-------------hhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHH
Confidence 000 01122221 12368899999953 23557888999988888876654332 111 1122233
Q ss_pred Hhc-CCCCCcceeccCCCCcccCCCC
Q psy3395 192 KQV-DPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 r~~-DP~g~RtigVdLPGlTK~D~~~ 216 (775)
++. ...+.+.+.| .||.|+.+
T Consensus 100 ~~~~~~~~~piilv----gNK~Dl~~ 121 (172)
T cd04141 100 TRVRLTEDIPLVLV----GNKVDLES 121 (172)
T ss_pred HHhcCCCCCCEEEE----EEChhhhh
Confidence 332 2334677888 89999754
No 139
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.74 E-value=0.00032 Score=69.06 Aligned_cols=118 Identities=17% Similarity=0.282 Sum_probs=67.8
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
..|+|||+.++||||+++++++..| |.... .| +....
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~-~t---~~~~~-------------------------------------- 39 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PERTE-AT---IGVDF-------------------------------------- 39 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCccc-cc---eeEEE--------------------------------------
Confidence 4799999999999999999998765 32211 00 00000
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-cc-chHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LA-TSDALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~-~s~~l~l 190 (775)
..-.+.+.+ ....+.++|+||... .-..+...|+++.+++|+++...+.+ +. ....+..
T Consensus 40 ------~~~~~~~~~-~~~~~~i~Dt~G~~~------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 100 (170)
T cd04115 40 ------RERTVEIDG-ERIKVQLWDTAGQER------------FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEE 100 (170)
T ss_pred ------EEEEEEECC-eEEEEEEEeCCChHH------------HHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHH
Confidence 000111111 124678999999421 11246788889999988876654322 11 1122333
Q ss_pred HHhc-CCCCCcceeccCCCCcccCCCC
Q psy3395 191 AKQV-DPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 191 ar~~-DP~g~RtigVdLPGlTK~D~~~ 216 (775)
++.. .......+.| .||.|+..
T Consensus 101 ~~~~~~~~~~p~iiv----~nK~Dl~~ 123 (170)
T cd04115 101 CEQHSLPNEVPRILV----GNKCDLRE 123 (170)
T ss_pred HHHhcCCCCCCEEEE----EECccchh
Confidence 3332 2234677888 89999864
No 140
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.74 E-value=8.4e-05 Score=72.70 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRG 61 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~ 61 (775)
.|++||.+++|||||+|+|.|...++.+
T Consensus 104 ~v~~~G~~nvGKStliN~l~~~~~~~~~ 131 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLRSKKVCKVA 131 (157)
T ss_pred EEEEEeCCCCChHHHHHHHhcCCceeeC
Confidence 5889999999999999999997654443
No 141
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.73 E-value=0.00025 Score=73.12 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=22.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|++||+.++|||||++.+++-.|
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~ 25 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF 25 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998765
No 142
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.73 E-value=0.00019 Score=69.86 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=66.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
+|+++|+.++||||++..+.+-.|.+.-..+...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~---------------------------------------------- 36 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED---------------------------------------------- 36 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh----------------------------------------------
Confidence 6999999999999999999887763221110000
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-cc-chHHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LA-TSDALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~-~s~~l~la 191 (775)
+. ...+.+.+ ....+.|.|+||..+ .+.+...|+.+.+++|++....+.. +. ....+...
T Consensus 37 --~~--~~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~ 98 (163)
T cd04176 37 --FY--RKEIEVDS-SPSVLEILDTAGTEQ-------------FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQI 98 (163)
T ss_pred --eE--EEEEEECC-EEEEEEEEECCCccc-------------ccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 00 01111211 123578999999532 2346677888899888776544322 11 11122222
Q ss_pred Hh-cCCCCCcceeccCCCCcccCCCC
Q psy3395 192 KQ-VDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 r~-~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+ ....+...+.| .||.|+.+
T Consensus 99 ~~~~~~~~~piviv----~nK~Dl~~ 120 (163)
T cd04176 99 VRVKGYEKVPIILV----GNKVDLES 120 (163)
T ss_pred HHhcCCCCCCEEEE----EECccchh
Confidence 22 23345677888 89999864
No 143
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.73 E-value=0.00015 Score=71.78 Aligned_cols=116 Identities=21% Similarity=0.296 Sum_probs=67.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|++||+.++||||+++++++..| +..- .|+.-
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~----------------------------------------- 34 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNY-----KATIG----------------------------------------- 34 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCC-----CCcee-----------------------------------------
Confidence 589999999999999999999876 2111 11100
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~la 191 (775)
..+ ...++++.+ ....+.+.|+||.. ....+...|++..+.++|++...+.+ +.. ...+...
T Consensus 35 ~~~--~~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~ 98 (170)
T cd04108 35 VDF--EMERFEILG-VPFSLQLWDTAGQE-------------RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDA 98 (170)
T ss_pred eEE--EEEEEEECC-EEEEEEEEeCCChH-------------HHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 000 001122221 12468899999953 23457778888888776665443211 211 1123332
Q ss_pred -HhcCCCCCcceeccCCCCcccCCCC
Q psy3395 192 -KQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 -r~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+...|.....++| .||.|+.+
T Consensus 99 ~~~~~~~~~~iilV----gnK~Dl~~ 120 (170)
T cd04108 99 LKENDPSSVLLFLV----GTKKDLSS 120 (170)
T ss_pred HHhcCCCCCeEEEE----EEChhcCc
Confidence 3345554456788 89999864
No 144
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.72 E-value=0.00022 Score=73.48 Aligned_cols=133 Identities=20% Similarity=0.266 Sum_probs=71.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|||..++|||||+++|++..+ .. ++. .. ...... .+.|..+ .+.+. |
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~-~~-----~~~-----~~-~~~~~~--------~~~d~~~--~e~~~------g-- 51 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTH-DL-----TPS-----GK-DGWKPL--------RYTDIRK--DEQER------G-- 51 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcC-CC-----ccc-----cc-ccCCce--------eECCCCH--HHHHc------C--
Confidence 389999999999999999998654 11 111 00 000000 0111111 11110 1
Q ss_pred CcccccCeEEEEec--CCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHH
Q psy3395 114 KGISNVPINLRVYS--PNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~--p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~la 191 (775)
-.+....+.+.... .....++++|+||.... ...+..|+...+++|++|-. ....... .....
T Consensus 52 iti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f-------------~~~~~~~~~~aD~~llVvD~-~~~~~~~-~~~~~ 116 (213)
T cd04167 52 ISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNF-------------MDEVAAALRLSDGVVLVVDV-VEGVTSN-TERLI 116 (213)
T ss_pred ccccccceeEEEEcCCCCEEEEEEEECCCCcch-------------HHHHHHHHHhCCEEEEEEEC-CCCCCHH-HHHHH
Confidence 11222334443332 22357899999996431 23567788888888776654 3333222 22222
Q ss_pred HhcCCCCCcceeccCCCCcccCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIG 215 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~ 215 (775)
+.....+...+.| +||+|+.
T Consensus 117 ~~~~~~~~p~iiv----iNK~D~~ 136 (213)
T cd04167 117 RHAILEGLPIVLV----INKIDRL 136 (213)
T ss_pred HHHHHcCCCEEEE----EECcccC
Confidence 3232345677888 9999986
No 145
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.72 E-value=0.00016 Score=70.58 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCc-cccccc
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRP 69 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p 69 (775)
...++|+++|..++||||++++|+|..-++.+.+ .+||.+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~ 138 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce
Confidence 4568899999999999999999999764455544 456654
No 146
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.71 E-value=0.00028 Score=69.99 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..|+++|.+++||||+++.|++-.|
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~ 40 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEV 40 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC
Confidence 4799999999999999999987665
No 147
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.71 E-value=0.00022 Score=71.78 Aligned_cols=24 Identities=33% Similarity=0.736 Sum_probs=22.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|+|||+.++|||||++++++..|
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~ 25 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRF 25 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCc
Confidence 699999999999999999998776
No 148
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.71 E-value=0.00017 Score=71.36 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=41.5
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhc----CCCCCcceeccC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQV----DPDVLNLTLVDL 206 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~----DP~g~RtigVdL 206 (775)
..+.|.|+||.. ..+.+...|+++.+++|+++-..+.. +-.++....+++ ...+...+.|
T Consensus 53 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~a~~ii~v~D~t~~~-s~~~~~~~~~~~~~~~~~~~~piilv-- 116 (168)
T cd04149 53 VKFNVWDVGGQD-------------KIRPLWRHYYTGTQGLIFVVDSADRD-RIDEARQELHRIINDREMRDALLLVF-- 116 (168)
T ss_pred EEEEEEECCCCH-------------HHHHHHHHHhccCCEEEEEEeCCchh-hHHHHHHHHHHHhcCHhhcCCcEEEE--
Confidence 358899999953 23456678889999887776654422 122222222221 1234577888
Q ss_pred CCCcccCCCC
Q psy3395 207 PGMTKVPIGD 216 (775)
Q Consensus 207 PGlTK~D~~~ 216 (775)
.+|.|+.+
T Consensus 117 --~NK~Dl~~ 124 (168)
T cd04149 117 --ANKQDLPD 124 (168)
T ss_pred --EECcCCcc
Confidence 89999864
No 149
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.69 E-value=0.00033 Score=66.27 Aligned_cols=29 Identities=31% Similarity=0.578 Sum_probs=24.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGS 62 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~ 62 (775)
+.|+++|..+|||||++++|++..+ |...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~~~ 30 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF-ITEY 30 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-cCcC
Confidence 5799999999999999999999873 5443
No 150
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.69 E-value=0.00039 Score=71.27 Aligned_cols=118 Identities=20% Similarity=0.344 Sum_probs=78.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCc--ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g--~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
+|||+|+.|+||||+++++++..| +.+.. +.+.+|...
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~--------------------------------------- 46 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKT--------------------------------------- 46 (219)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEE---------------------------------------
Confidence 699999999999999999999886 43221 111111100
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC---ccchHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD---LATSDAL 188 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d---~~~s~~l 188 (775)
.........+.++|++|.. .++.+...|...++.+++++...... -......
T Consensus 47 ------------~~~~~~~~~~~~~Dt~gq~-------------~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~ 101 (219)
T COG1100 47 ------------IEPYRRNIKLQLWDTAGQE-------------EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWL 101 (219)
T ss_pred ------------EEeCCCEEEEEeecCCCHH-------------HHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHH
Confidence 0000013457799999942 45778999999999998887766522 2233345
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCChhc
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQPAD 220 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~~~d 220 (775)
..++..++.....+.| .+|.|+.+....
T Consensus 102 ~~l~~~~~~~~~iilv----~nK~Dl~~~~~~ 129 (219)
T COG1100 102 EELRELAPDDVPILLV----GNKIDLFDEQSS 129 (219)
T ss_pred HHHHHhCCCCceEEEE----ecccccccchhH
Confidence 5566666656677788 899999876543
No 151
>PLN03110 Rab GTPase; Provisional
Probab=97.67 E-value=0.00027 Score=73.05 Aligned_cols=117 Identities=15% Similarity=0.234 Sum_probs=69.4
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
-.|+|||++++|||||++.|++..| +... ..| +.+.+
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~-~~t---~g~~~-------------------------------------- 49 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEF-CLES-KST---IGVEF-------------------------------------- 49 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCC-CCc---eeEEE--------------------------------------
Confidence 4799999999999999999998876 2211 001 00000
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~l 190 (775)
....+.+.+ ....+.|.|+||-. ....+...|+++...+|+++...+.+ +.+ ...+..
T Consensus 50 ------~~~~v~~~~-~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~ 109 (216)
T PLN03110 50 ------ATRTLQVEG-KTVKAQIWDTAGQE-------------RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRE 109 (216)
T ss_pred ------EEEEEEECC-EEEEEEEEECCCcH-------------HHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHH
Confidence 001111211 22367799999932 24567788998887776665443221 111 234555
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
++...+.+...++| .+|+|+..
T Consensus 110 ~~~~~~~~~piiiv----~nK~Dl~~ 131 (216)
T PLN03110 110 LRDHADSNIVIMMA----GNKSDLNH 131 (216)
T ss_pred HHHhCCCCCeEEEE----EEChhccc
Confidence 55555555667778 89999753
No 152
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.66 E-value=0.00012 Score=71.67 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=22.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|+|+|..++||||++++|++..|
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~ 25 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999999886
No 153
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.66 E-value=0.00014 Score=74.13 Aligned_cols=68 Identities=24% Similarity=0.309 Sum_probs=41.1
Q ss_pred CCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHHHhcCCCCC-cceecc
Q psy3395 129 NVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIAKQVDPDVL-NLTLVD 205 (775)
Q Consensus 129 ~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~lar~~DP~g~-RtigVd 205 (775)
....++|||+||... .+..+. .-+...+++|| |++|...+..+ ..+.+++.. |. +.|+|
T Consensus 63 ~~~~i~~iDtPG~~~------------~~~~~~-~~~~~~D~~il-Vvda~~g~~~~~~~~~~~~~~~---~~~~iIvv- 124 (195)
T cd01884 63 ANRHYAHVDCPGHAD------------YIKNMI-TGAAQMDGAIL-VVSATDGPMPQTREHLLLARQV---GVPYIVVF- 124 (195)
T ss_pred CCeEEEEEECcCHHH------------HHHHHH-HHhhhCCEEEE-EEECCCCCcHHHHHHHHHHHHc---CCCcEEEE-
Confidence 345789999999631 233332 23445665555 55666555444 345555553 44 57788
Q ss_pred CCCCcccCCCCC
Q psy3395 206 LPGMTKVPIGDQ 217 (775)
Q Consensus 206 LPGlTK~D~~~~ 217 (775)
+||+|+.++
T Consensus 125 ---iNK~D~~~~ 133 (195)
T cd01884 125 ---LNKADMVDD 133 (195)
T ss_pred ---EeCCCCCCc
Confidence 899999753
No 154
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.66 E-value=0.00023 Score=84.05 Aligned_cols=115 Identities=20% Similarity=0.300 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
...|.|+++|..++||||||++|.+..|.....+..|.--
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~i---------------------------------------- 124 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHI---------------------------------------- 124 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecc----------------------------------------
Confidence 3568999999999999999999998776332222222200
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDA 187 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~ 187 (775)
| ...+.+ ++.-.++|+|+||... ...|..++....+.+||+| +++... .+.+.
T Consensus 125 -g--------~~~v~~--~~~~~i~~iDTPGhe~-------------F~~~r~rga~~aDiaILVV-da~dgv~~qT~e~ 179 (587)
T TIGR00487 125 -G--------AYHVEN--EDGKMITFLDTPGHEA-------------FTSMRARGAKVTDIVVLVV-AADDGVMPQTIEA 179 (587)
T ss_pred -e--------EEEEEE--CCCcEEEEEECCCCcc-------------hhhHHHhhhccCCEEEEEE-ECCCCCCHhHHHH
Confidence 0 001111 1112689999999532 2345567777777777766 454433 23334
Q ss_pred HHHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 188 l~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+..++. .+...+.+ +||+|+.+
T Consensus 180 i~~~~~---~~vPiIVv----iNKiDl~~ 201 (587)
T TIGR00487 180 ISHAKA---ANVPIIVA----INKIDKPE 201 (587)
T ss_pred HHHHHH---cCCCEEEE----EECccccc
Confidence 555444 45678888 89999864
No 155
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.65 E-value=0.00039 Score=68.26 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFL 58 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~fl 58 (775)
.|++||..++||||+++++++..|.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~ 27 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFI 27 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5999999999999999999987763
No 156
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.65 E-value=0.00059 Score=67.66 Aligned_cols=24 Identities=50% Similarity=0.742 Sum_probs=22.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|++||..++||||+++.+++..|
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~ 26 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998765
No 157
>KOG1191|consensus
Probab=97.64 E-value=0.0003 Score=78.93 Aligned_cols=95 Identities=29% Similarity=0.323 Sum_probs=58.0
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
-++||++|..++|||||||+|+..+. .|++-.|
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~dr-----sIVSpv~------------------------------------------ 300 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDR-----SIVSPVP------------------------------------------ 300 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCc-----eEeCCCC------------------------------------------
Confidence 48899999999999999999998664 2322211
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL 182 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~ 182 (775)
|-+.|.|...+. ++.....|+|+-|+.+- .++-++.+ -|+ -..+-+... .+|++|++|+.-.
T Consensus 301 ---GTTRDaiea~v~-~~G~~v~L~DTAGiRe~-~~~~iE~~--gI~-rA~k~~~~a-dvi~~vvda~~~~ 362 (531)
T KOG1191|consen 301 ---GTTRDAIEAQVT-VNGVPVRLSDTAGIREE-SNDGIEAL--GIE-RARKRIERA-DVILLVVDAEESD 362 (531)
T ss_pred ---CcchhhheeEee-cCCeEEEEEeccccccc-cCChhHHH--hHH-HHHHHHhhc-CEEEEEecccccc
Confidence 223444555555 56667889999999872 22221111 011 123333333 4778888885433
No 158
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.64 E-value=0.00035 Score=72.47 Aligned_cols=24 Identities=25% Similarity=0.630 Sum_probs=21.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|+|||+.++|||||++.+++-.|
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~ 25 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEY 25 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCc
Confidence 699999999999999999976555
No 159
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.63 E-value=0.00023 Score=72.32 Aligned_cols=24 Identities=21% Similarity=0.612 Sum_probs=22.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+|+|||+.++|||||++++++..|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~ 24 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC
Confidence 489999999999999999998775
No 160
>PLN03118 Rab family protein; Provisional
Probab=97.63 E-value=0.00052 Score=70.42 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.+|+|||+.++||||++++|++..|
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~ 39 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV 39 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC
Confidence 3799999999999999999998764
No 161
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.62 E-value=0.00015 Score=73.24 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.++++||..++|||||+|+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 4699999999999999999998653
No 162
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.62 E-value=0.00026 Score=83.63 Aligned_cols=133 Identities=20% Similarity=0.337 Sum_probs=73.7
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhh
Q psy3395 29 QMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDR 108 (775)
Q Consensus 29 ~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 108 (775)
.+..|.|+++|..++||||||++|.|..+.-...|..|+-- |-.+.+.+.. ..
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~i-------------------g~~~~~~~~~--------~~ 55 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHI-------------------GATEVPIDVI--------EK 55 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEee-------------------ceeecccccc--------cc
Confidence 35679999999999999999999998754222223344310 0000000000 00
Q ss_pred hcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc--hH
Q psy3395 109 ITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT--SD 186 (775)
Q Consensus 109 ~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~--s~ 186 (775)
..|. .+. .+..++. .+.++|+|+||.. ....+...++...+.+||+| ++...+.. -+
T Consensus 56 ~~~~--~~~--~~~~~~~---~~~i~~iDTPG~e-------------~f~~~~~~~~~~aD~~IlVv-Da~~g~~~qt~e 114 (586)
T PRK04004 56 IAGP--LKK--PLPIKLK---IPGLLFIDTPGHE-------------AFTNLRKRGGALADIAILVV-DINEGFQPQTIE 114 (586)
T ss_pred ccce--ecc--ccccccc---cCCEEEEECCChH-------------HHHHHHHHhHhhCCEEEEEE-ECCCCCCHhHHH
Confidence 0010 000 0111221 2358999999953 23445566777777666654 55543322 23
Q ss_pred HHHHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 187 ALQIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 187 ~l~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+.+++. .+...+.| +||+|+.+
T Consensus 115 ~i~~~~~---~~vpiIvv----iNK~D~~~ 137 (586)
T PRK04004 115 AINILKR---RKTPFVVA----ANKIDRIP 137 (586)
T ss_pred HHHHHHH---cCCCEEEE----EECcCCch
Confidence 4555554 35668888 89999863
No 163
>COG2262 HflX GTPases [General function prediction only]
Probab=97.60 E-value=0.00072 Score=74.73 Aligned_cols=148 Identities=20% Similarity=0.340 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHHhcCC--------CCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeecc
Q psy3395 8 EQLIPIVNKLQDAFTQLGV--------PMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSM 78 (775)
Q Consensus 8 ~~li~~~~~l~d~l~~~G~--------~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~ 78 (775)
+.+-.-|.+|+..|..+-. ...-..|+|..||=.+||||||+|+|+|... +...- ..|=-|+
T Consensus 160 R~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpt-------- 230 (411)
T COG2262 160 RRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADV-YVADQLFATLDPT-------- 230 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCe-eccccccccccCc--------
Confidence 4444566677666655432 1247999999999999999999999998775 32221 1222111
Q ss_pred ccceeeeccCCccccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHH
Q psy3395 79 TEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIK 158 (775)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~ 158 (775)
.=++.-++.-...|-|+-|+++ +=|..+.+..+
T Consensus 231 -------------------------------------------tR~~~l~~g~~vlLtDTVGFI~----~LP~~LV~AFk 263 (411)
T COG2262 231 -------------------------------------------TRRIELGDGRKVLLTDTVGFIR----DLPHPLVEAFK 263 (411)
T ss_pred -------------------------------------------eeEEEeCCCceEEEecCccCcc----cCChHHHHHHH
Confidence 1112223344577999999976 34666666666
Q ss_pred HHHHHHhhccccEEEEEecCCCC-ccc--hHHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 159 DMLFQFITKETCLILAVTPANTD-LAT--SDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 159 ~lv~~yi~~~~~iILaV~~a~~d-~~~--s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.-... +..++ ++|.|+.|..+ +.. ..+....++++-...++|.| ++|+|++..
T Consensus 264 sTLEE-~~~aD-lllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v----~NKiD~~~~ 319 (411)
T COG2262 264 STLEE-VKEAD-LLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILV----LNKIDLLED 319 (411)
T ss_pred HHHHH-hhcCC-EEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEE----EecccccCc
Confidence 54444 33444 66667766544 222 23567777877777899999 999998864
No 164
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.60 E-value=0.0003 Score=85.30 Aligned_cols=114 Identities=21% Similarity=0.308 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
...|.|+|+|..++||||||++|.+..|.....+..|.- +
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~----------------------------------------i 327 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQH----------------------------------------I 327 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeee----------------------------------------c
Confidence 356899999999999999999998765421111111110 0
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCcc--chHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLA--TSDA 187 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~--~s~~ 187 (775)
| ...+.+. -..++|+|+||... ...|...+....+.+||+| +++.... +.++
T Consensus 328 -g--------a~~v~~~---~~~ItfiDTPGhe~-------------F~~m~~rga~~aDiaILVV-dAddGv~~qT~e~ 381 (787)
T PRK05306 328 -G--------AYQVETN---GGKITFLDTPGHEA-------------FTAMRARGAQVTDIVVLVV-AADDGVMPQTIEA 381 (787)
T ss_pred -c--------EEEEEEC---CEEEEEEECCCCcc-------------chhHHHhhhhhCCEEEEEE-ECCCCCCHhHHHH
Confidence 0 0112221 13689999999532 2346667777777776655 5554332 2345
Q ss_pred HHHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 188 l~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+..++. .+...|.| +||+|+.+
T Consensus 382 i~~a~~---~~vPiIVv----iNKiDl~~ 403 (787)
T PRK05306 382 INHAKA---AGVPIIVA----INKIDKPG 403 (787)
T ss_pred HHHHHh---cCCcEEEE----EECccccc
Confidence 555554 45678888 99999964
No 165
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.60 E-value=0.0005 Score=70.39 Aligned_cols=25 Identities=16% Similarity=0.565 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
|.|+++|..+||||||+..|++..|
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~ 25 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY 25 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999998765
No 166
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.59 E-value=0.00026 Score=71.34 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=40.9
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHHHHhcC---CCCCcceeccC
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQIAKQVD---PDVLNLTLVDL 206 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~lar~~D---P~g~RtigVdL 206 (775)
.|.|+|+||.. ..+.+...|++..+++|+++...+.+ +.. ...+...+.+. +.....+.|
T Consensus 48 ~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv-- 112 (190)
T cd04144 48 MLEVLDTAGQE-------------EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIV-- 112 (190)
T ss_pred EEEEEECCCch-------------hhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEE--
Confidence 58899999942 23446678899999888776543321 111 12333333332 234567778
Q ss_pred CCCcccCCCC
Q psy3395 207 PGMTKVPIGD 216 (775)
Q Consensus 207 PGlTK~D~~~ 216 (775)
.+|.|+.+
T Consensus 113 --gNK~Dl~~ 120 (190)
T cd04144 113 --GNKCDKVY 120 (190)
T ss_pred --EEChhccc
Confidence 89999853
No 167
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.58 E-value=0.00022 Score=71.23 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=25.8
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGS 62 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~ 62 (775)
.-+++|||..++|||||+++|+|....+++.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~ 147 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGA 147 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecC
Confidence 4579999999999999999999976545443
No 168
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.58 E-value=0.00058 Score=66.76 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=67.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|||+.++||||++..+++..|.|.. ..|-.+ .
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~t~~~---~---------------------------------------- 36 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH--ISTIGV---D---------------------------------------- 36 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC--CCceee---E----------------------------------------
Confidence 5899999999999999999988773321 111100 0
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-cc-chHHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LA-TSDALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~-~s~~l~la 191 (775)
+ ....+.+.+ ....+.+.|+||-. ....+...|..+.+++++++...+.+ +. ....+..+
T Consensus 37 --~--~~~~~~~~~-~~~~l~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~ 98 (161)
T cd04117 37 --F--KMKTIEVDG-IKVRIQIWDTAGQE-------------RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDV 98 (161)
T ss_pred --E--EEEEEEECC-EEEEEEEEeCCCcH-------------hHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHH
Confidence 0 001111211 12357799999942 23456778888888887766543321 10 01123333
Q ss_pred HhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
++..+.....+.| -||.|+.++
T Consensus 99 ~~~~~~~~~iilv----gnK~Dl~~~ 120 (161)
T cd04117 99 DEYAPEGVQKILI----GNKADEEQK 120 (161)
T ss_pred HHhCCCCCeEEEE----EECcccccc
Confidence 3344444566777 799998643
No 169
>PLN03127 Elongation factor Tu; Provisional
Probab=97.58 E-value=0.00019 Score=82.21 Aligned_cols=128 Identities=18% Similarity=0.278 Sum_probs=72.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
-.|+++|...+|||||+++|+|.. -..|.+ +. + .+...|....|.
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~-~~~g~~---~~------------~---------~~~~~D~~~~E~---------- 106 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVL-AEEGKA---KA------------V---------AFDEIDKAPEEK---------- 106 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHH-HHhhcc---cc------------e---------eeccccCChhHh----------
Confidence 349999999999999999998742 011110 00 0 000111111111
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~l 190 (775)
..+++-+.....+... -..++|||+||..+ .+.+|+... ...+.+ +.|++|+..+..+ +.+.+
T Consensus 107 ~rGiTi~~~~~~~~~~-~~~i~~iDtPGh~~------------f~~~~~~g~-~~aD~a-llVVda~~g~~~qt~e~l~~ 171 (447)
T PLN03127 107 ARGITIATAHVEYETA-KRHYAHVDCPGHAD------------YVKNMITGA-AQMDGG-ILVVSAPDGPMPQTKEHILL 171 (447)
T ss_pred hcCceeeeeEEEEcCC-CeEEEEEECCCccc------------hHHHHHHHH-hhCCEE-EEEEECCCCCchhHHHHHHH
Confidence 1344444444444433 34789999999632 455565543 335544 5566777665444 34555
Q ss_pred HHhcCCCCCc-ceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLN-LTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~R-tigVdLPGlTK~D~~~~ 217 (775)
++.. |.+ .|.| +||+|+.+.
T Consensus 172 ~~~~---gip~iIvv----iNKiDlv~~ 192 (447)
T PLN03127 172 ARQV---GVPSLVVF----LNKVDVVDD 192 (447)
T ss_pred HHHc---CCCeEEEE----EEeeccCCH
Confidence 6553 445 4788 899999863
No 170
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.58 E-value=0.00038 Score=82.50 Aligned_cols=128 Identities=18% Similarity=0.304 Sum_probs=74.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
-|++||+.++|||||+++|+... |..+++. ++..+.|..+..++ .|
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~------g~i~~~~------------------~~~~~~D~~~~Ere--------rG-- 50 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYT------GAISERE------------------MREQVLDSMDLERE--------RG-- 50 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc------CCCcccc------------------ccccccCCChHHHh--------cC--
Confidence 48999999999999999998642 3333321 01122222211110 11
Q ss_pred CcccccCeEEEEe--cCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--HHH
Q psy3395 114 KGISNVPINLRVY--SPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--ALQ 189 (775)
Q Consensus 114 ~~~s~~~i~l~i~--~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~l~ 189 (775)
-.+....+.+... ......+.|+|+||... ....+..|+...+++||+| +++.....+. .+.
T Consensus 51 iTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d-------------F~~~v~~~l~~aD~aILVv-Dat~g~~~qt~~~~~ 116 (595)
T TIGR01393 51 ITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD-------------FSYEVSRSLAACEGALLLV-DAAQGIEAQTLANVY 116 (595)
T ss_pred CCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH-------------HHHHHHHHHHhCCEEEEEe-cCCCCCCHhHHHHHH
Confidence 1233334444443 22335799999999743 2346778888888776654 5555444333 233
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+.+ .+...+.| +||+|+.+
T Consensus 117 ~~~~---~~ipiIiV----iNKiDl~~ 136 (595)
T TIGR01393 117 LALE---NDLEIIPV----INKIDLPS 136 (595)
T ss_pred HHHH---cCCCEEEE----EECcCCCc
Confidence 3333 24567888 89999864
No 171
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.58 E-value=0.00031 Score=69.88 Aligned_cols=68 Identities=18% Similarity=0.287 Sum_probs=41.1
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhc----CCCCCcceeccC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQV----DPDVLNLTLVDL 206 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~----DP~g~RtigVdL 206 (775)
..+.|.|+||.. ..+.+...|+++.+++|+++-..+.+ .-.++......+ .......+.|
T Consensus 57 ~~l~l~D~~G~~-------------~~~~~~~~~~~~ad~ii~v~D~t~~~-s~~~~~~~l~~~~~~~~~~~~piilv-- 120 (175)
T smart00177 57 ISFTVWDVGGQD-------------KIRPLWRHYYTNTQGLIFVVDSNDRD-RIDEAREELHRMLNEDELRDAVILVF-- 120 (175)
T ss_pred EEEEEEECCCCh-------------hhHHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHhhCHhhcCCcEEEE--
Confidence 468899999953 23557888999999888876654332 111122222111 1123456777
Q ss_pred CCCcccCCCC
Q psy3395 207 PGMTKVPIGD 216 (775)
Q Consensus 207 PGlTK~D~~~ 216 (775)
.+|.|+.+
T Consensus 121 --~NK~Dl~~ 128 (175)
T smart00177 121 --ANKQDLPD 128 (175)
T ss_pred --EeCcCccc
Confidence 89999864
No 172
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.57 E-value=0.00061 Score=69.29 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=22.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|||||+.++|||||++.+++..|
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~ 25 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIF 25 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998776
No 173
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.55 E-value=0.00038 Score=78.98 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=48.8
Q ss_pred cccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHHH
Q psy3395 115 GISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIAK 192 (775)
Q Consensus 115 ~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~lar 192 (775)
++|-+.-...+.. .-..++|+|+||.. +.+++|+.. +...+.+|| |++|...+..+ +.+.+++
T Consensus 65 giTid~~~~~~~~-~~~~~~liDtPGh~------------~f~~~~~~~-~~~aD~all-VVda~~G~~~qt~~~~~~~~ 129 (406)
T TIGR02034 65 GITIDVAYRYFST-DKRKFIVADTPGHE------------QYTRNMATG-ASTADLAVL-LVDARKGVLEQTRRHSYIAS 129 (406)
T ss_pred CcCeEeeeEEEcc-CCeEEEEEeCCCHH------------HHHHHHHHH-HhhCCEEEE-EEECCCCCccccHHHHHHHH
Confidence 3444433333333 33478999999942 244555543 455565544 56676665444 3466666
Q ss_pred hcCCCCCcceeccCCCCcccCCCCCh
Q psy3395 193 QVDPDVLNLTLVDLPGMTKVPIGDQP 218 (775)
Q Consensus 193 ~~DP~g~RtigVdLPGlTK~D~~~~~ 218 (775)
... ..+.+.| +||+|+.+..
T Consensus 130 ~~~--~~~iivv----iNK~D~~~~~ 149 (406)
T TIGR02034 130 LLG--IRHVVLA----VNKMDLVDYD 149 (406)
T ss_pred HcC--CCcEEEE----EEecccccch
Confidence 654 2456778 8999998643
No 174
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.55 E-value=0.00026 Score=75.75 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=29.7
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEE
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 72 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l 72 (775)
|++||-.++|||||+++|+|...-+..-..||+-|..-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g 38 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVG 38 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceee
Confidence 57899999999999999999885333335788877543
No 175
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.54 E-value=0.00053 Score=68.50 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|+|||+.++||||+++.+.+..|
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~ 25 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF 25 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC
Confidence 589999999999999999998875
No 176
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.54 E-value=0.00047 Score=67.41 Aligned_cols=68 Identities=15% Similarity=0.271 Sum_probs=40.9
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhc----CCCCCcceeccC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQV----DPDVLNLTLVDL 206 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~----DP~g~RtigVdL 206 (775)
..+.|.|+||.. ..+.+...|+++.+++|+++-..+.+ +-.++....+++ .-.....+.|
T Consensus 44 ~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~~i~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv-- 107 (159)
T cd04150 44 ISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIFVVDSNDRE-RIGEAREELQRMLNEDELRDAVLLVF-- 107 (159)
T ss_pred EEEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhcHHhcCCCEEEE--
Confidence 458899999952 24557778999999887776554322 111222222222 1123456777
Q ss_pred CCCcccCCCC
Q psy3395 207 PGMTKVPIGD 216 (775)
Q Consensus 207 PGlTK~D~~~ 216 (775)
.||.|+.+
T Consensus 108 --~NK~Dl~~ 115 (159)
T cd04150 108 --ANKQDLPN 115 (159)
T ss_pred --EECCCCCC
Confidence 79999864
No 177
>PTZ00369 Ras-like protein; Provisional
Probab=97.53 E-value=0.00069 Score=68.17 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..|+|||+.++||||+++.+.+-.|
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~ 30 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHF 30 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999998766
No 178
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.53 E-value=0.00037 Score=68.56 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=21.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~f 57 (775)
|+|||+.++||||+++.+.+..|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~ 23 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF 23 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC
Confidence 68999999999999999999876
No 179
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.53 E-value=0.00027 Score=73.61 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCC--CCccccCc--cccc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGR--DFLPRGSG--IVTR 67 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~--~flPr~~g--~~TR 67 (775)
++=.|+|+|.+++|||+|||.|+|. .| +.+.+ -|||
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f-~~~~~~~~~T~ 45 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGF-DVMDTSQQTTK 45 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCe-EecCCCCCCcc
Confidence 3445899999999999999999998 65 77766 6776
No 180
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.52 E-value=0.00077 Score=67.61 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
-+|++||++++||||++..+..-.|
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~ 42 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEV 42 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Confidence 4799999999999999999965444
No 181
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.51 E-value=0.00071 Score=70.41 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=43.4
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGM 209 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGl 209 (775)
-..+.|+|+||... ....+..++...+++||+| ++......+ ...+++.....+.+.+.| +
T Consensus 72 ~~~i~iiDTPG~~~-------------f~~~~~~~l~~aD~~ilVv-D~~~g~~~~-t~~~l~~~~~~~~p~ilv----i 132 (222)
T cd01885 72 EYLINLIDSPGHVD-------------FSSEVTAALRLCDGALVVV-DAVEGVCVQ-TETVLRQALKERVKPVLV----I 132 (222)
T ss_pred ceEEEEECCCCccc-------------cHHHHHHHHHhcCeeEEEE-ECCCCCCHH-HHHHHHHHHHcCCCEEEE----E
Confidence 35689999999743 1235777888888887755 454444333 233333333356678899 9
Q ss_pred cccCCC
Q psy3395 210 TKVPIG 215 (775)
Q Consensus 210 TK~D~~ 215 (775)
+|+|+.
T Consensus 133 NKiD~~ 138 (222)
T cd01885 133 NKIDRL 138 (222)
T ss_pred ECCCcc
Confidence 999986
No 182
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.51 E-value=0.0004 Score=82.16 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=41.8
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCcc--chHHHHHHHhcCCCCCc-ceeccCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLA--TSDALQIAKQVDPDVLN-LTLVDLP 207 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~--~s~~l~lar~~DP~g~R-tigVdLP 207 (775)
..++++|+||.. ..++. +..++.+.+.+|| |++++..+. +.+.+.+++.. |.. .+.|
T Consensus 50 ~~v~~iDtPGhe------------~f~~~-~~~g~~~aD~aIL-VVDa~~G~~~qT~ehl~il~~l---gi~~iIVV--- 109 (581)
T TIGR00475 50 YRLGFIDVPGHE------------KFISN-AIAGGGGIDAALL-VVDADEGVMTQTGEHLAVLDLL---GIPHTIVV--- 109 (581)
T ss_pred EEEEEEECCCHH------------HHHHH-HHhhhccCCEEEE-EEECCCCCcHHHHHHHHHHHHc---CCCeEEEE---
Confidence 578999999941 23343 4456677776666 555655432 23345555553 344 8889
Q ss_pred CCcccCCCCC
Q psy3395 208 GMTKVPIGDQ 217 (775)
Q Consensus 208 GlTK~D~~~~ 217 (775)
+||+|+.++
T Consensus 110 -lNK~Dlv~~ 118 (581)
T TIGR00475 110 -ITKADRVNE 118 (581)
T ss_pred -EECCCCCCH
Confidence 999999864
No 183
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.50 E-value=0.0005 Score=81.74 Aligned_cols=67 Identities=24% Similarity=0.311 Sum_probs=41.8
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~lar~~DP~g~RtigVdLPG 208 (775)
..++|||+||. +..+++|+ .++...+.++| |++|+..+..+ +.+.+++... ....+.|
T Consensus 51 ~~i~~IDtPGh------------e~fi~~m~-~g~~~~D~~lL-VVda~eg~~~qT~ehl~il~~lg--i~~iIVV---- 110 (614)
T PRK10512 51 RVLGFIDVPGH------------EKFLSNML-AGVGGIDHALL-VVACDDGVMAQTREHLAILQLTG--NPMLTVA---- 110 (614)
T ss_pred cEEEEEECCCH------------HHHHHHHH-HHhhcCCEEEE-EEECCCCCcHHHHHHHHHHHHcC--CCeEEEE----
Confidence 35789999995 22455554 44566666655 55676655444 3455665543 2345688
Q ss_pred CcccCCCCC
Q psy3395 209 MTKVPIGDQ 217 (775)
Q Consensus 209 lTK~D~~~~ 217 (775)
+||+|+.++
T Consensus 111 lNKiDlv~~ 119 (614)
T PRK10512 111 LTKADRVDE 119 (614)
T ss_pred EECCccCCH
Confidence 999999864
No 184
>KOG2486|consensus
Probab=97.49 E-value=0.00027 Score=74.11 Aligned_cols=74 Identities=18% Similarity=0.298 Sum_probs=46.3
Q ss_pred ceEEEeCCCCCccCCCCC-cccHHHHHHHHHHHHhhccccEE--EEEecCCCCccchH--HHHHHHhcCCCCCcceeccC
Q psy3395 132 NITLIDLPGLTKVPVGDQ-PIDIEQQIKDMLFQFITKETCLI--LAVTPANTDLATSD--ALQIAKQVDPDVLNLTLVDL 206 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q-~~di~~~i~~lv~~yi~~~~~iI--LaV~~a~~d~~~s~--~l~lar~~DP~g~RtigVdL 206 (775)
.+++|||||+.+...+.. |+ .+-++++.|+.+...++ ++.+.|...+.+-| +...+-+ .+-.-..|
T Consensus 184 ~~~~vDlPG~~~a~y~~~~~~----d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge---~~VP~t~v-- 254 (320)
T KOG2486|consen 184 SWYEVDLPGYGRAGYGFELPA----DWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE---NNVPMTSV-- 254 (320)
T ss_pred eEEEEecCCcccccCCccCcc----hHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh---cCCCeEEe--
Confidence 688999999876554432 33 35678999998765554 22334444444444 2333333 45566788
Q ss_pred CCCcccCCCC
Q psy3395 207 PGMTKVPIGD 216 (775)
Q Consensus 207 PGlTK~D~~~ 216 (775)
+||+|.+-
T Consensus 255 --fTK~DK~k 262 (320)
T KOG2486|consen 255 --FTKCDKQK 262 (320)
T ss_pred --eehhhhhh
Confidence 99999874
No 185
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.49 E-value=0.00034 Score=68.29 Aligned_cols=24 Identities=38% Similarity=0.737 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|+|||+.++|||||++++.+..|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~ 24 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF 24 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc
Confidence 389999999999999999987665
No 186
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.48 E-value=0.00091 Score=77.33 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=74.7
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCcc--ccChHHHHHHHHHHH
Q psy3395 29 QMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKK--FVDFDEVRREIEAET 106 (775)
Q Consensus 29 ~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~--~~d~~~v~~~i~~~~ 106 (775)
.-....|||||..++|||||+++|+... |..++.-+. .+.+.. ...|.. ..++.-+.+...++-
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~------g~i~~~~~~-~~~~~~-------~~~g~~~~~~~~a~~~D~~~eEr 89 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDT------KQIYEDQLA-SLHNDS-------KRHGTQGEKLDLALLVDGLQAER 89 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhc------CCCcHHHHH-HHHHHH-------HhcCCCccccchhhhccCChHHh
Confidence 3566889999999999999999998643 222221000 000000 000100 000000100001110
Q ss_pred hhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch-
Q psy3395 107 DRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS- 185 (775)
Q Consensus 107 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s- 185 (775)
..+++-+.-. ..+...-..++|||+||.. ..+++++.. +...+.+ |.|++|+..+..+
T Consensus 90 ------~rgiTid~~~-~~~~~~~~~i~~iDTPGh~------------~f~~~~~~~-l~~aD~a-llVVDa~~G~~~qt 148 (474)
T PRK05124 90 ------EQGITIDVAY-RYFSTEKRKFIIADTPGHE------------QYTRNMATG-ASTCDLA-ILLIDARKGVLDQT 148 (474)
T ss_pred ------hcCCCeEeeE-EEeccCCcEEEEEECCCcH------------HHHHHHHHH-HhhCCEE-EEEEECCCCccccc
Confidence 1233433222 2233334579999999931 244556655 4555555 5566676655433
Q ss_pred -HHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 186 -DALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 186 -~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+.+.++....- .+.|.| +||+|+.+.
T Consensus 149 ~~~~~l~~~lg~--~~iIvv----vNKiD~~~~ 175 (474)
T PRK05124 149 RRHSFIATLLGI--KHLVVA----VNKMDLVDY 175 (474)
T ss_pred hHHHHHHHHhCC--CceEEE----EEeeccccc
Confidence 34555555431 356778 899999853
No 187
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.46 E-value=0.00071 Score=70.30 Aligned_cols=24 Identities=29% Similarity=0.726 Sum_probs=22.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|||||+.++||||+++.+++-.|
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f 25 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF 25 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 489999999999999999998876
No 188
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.46 E-value=0.00071 Score=67.85 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=41.2
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhc----CCCCCcceeccC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQV----DPDVLNLTLVDL 206 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~----DP~g~RtigVdL 206 (775)
..+.|+|+||- +..+.+...|+++.+++|+++-..+.+ .-.++.....++ .......+.|
T Consensus 61 ~~~~i~D~~Gq-------------~~~~~~~~~~~~~a~~iI~V~D~s~~~-s~~~~~~~l~~~l~~~~~~~~piilv-- 124 (181)
T PLN00223 61 ISFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVF-- 124 (181)
T ss_pred EEEEEEECCCC-------------HHHHHHHHHHhccCCEEEEEEeCCcHH-HHHHHHHHHHHHhcCHhhCCCCEEEE--
Confidence 45889999993 135668889999999988876544322 111222222221 1123566777
Q ss_pred CCCcccCCCC
Q psy3395 207 PGMTKVPIGD 216 (775)
Q Consensus 207 PGlTK~D~~~ 216 (775)
.+|.|+.+
T Consensus 125 --~NK~Dl~~ 132 (181)
T PLN00223 125 --ANKQDLPN 132 (181)
T ss_pred --EECCCCCC
Confidence 78888764
No 189
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.45 E-value=0.00069 Score=67.44 Aligned_cols=115 Identities=15% Similarity=0.229 Sum_probs=69.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|||||+.++||||++..+++-.| |... ..|-..
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f-~~~~-~pt~~~-------------------------------------------- 36 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF-PSEY-VPTVFD-------------------------------------------- 36 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCC-CCceee--------------------------------------------
Confidence 599999999999999999998776 3221 111100
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--HHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--DALQI 190 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~~l~l 190 (775)
.+ ...+.+.+ ....|.|.|+||-.+ .+.+...|+.+.+++||+....+.+ +.+. ..+..
T Consensus 37 -~~---~~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~ 98 (175)
T cd01874 37 -NY---AVTVMIGG-EPYTLGLFDTAGQED-------------YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 98 (175)
T ss_pred -ee---EEEEEECC-EEEEEEEEECCCccc-------------hhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 00 01112211 124678999999633 1235566888899888887654432 2221 13444
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+...| ....+.| .||.|+.+.
T Consensus 99 i~~~~~-~~piilv----gnK~Dl~~~ 120 (175)
T cd01874 99 ITHHCP-KTPFLLV----GTQIDLRDD 120 (175)
T ss_pred HHHhCC-CCCEEEE----EECHhhhhC
Confidence 444444 3577888 899998654
No 190
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.44 E-value=0.00077 Score=76.92 Aligned_cols=81 Identities=16% Similarity=0.304 Sum_probs=45.4
Q ss_pred cccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCC--Cccch--HHHHH
Q psy3395 115 GISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANT--DLATS--DALQI 190 (775)
Q Consensus 115 ~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~--d~~~s--~~l~l 190 (775)
|++-+.....+.. .-..++|+|+||... .++.++. .+...+.+|| |++++. .+..+ ..+.+
T Consensus 69 G~T~d~~~~~~~~-~~~~i~liDtpG~~~------------~~~~~~~-~~~~aD~~il-VvDa~~~~~~~~~~~~~~~~ 133 (425)
T PRK12317 69 GVTIDLAHKKFET-DKYYFTIVDCPGHRD------------FVKNMIT-GASQADAAVL-VVAADDAGGVMPQTREHVFL 133 (425)
T ss_pred CccceeeeEEEec-CCeEEEEEECCCccc------------chhhHhh-chhcCCEEEE-EEEcccCCCCCcchHHHHHH
Confidence 3444444444433 345799999999521 2233332 3456666655 555654 44333 34555
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
++... ..+.+.| +||.|+.+
T Consensus 134 ~~~~~--~~~iivv----iNK~Dl~~ 153 (425)
T PRK12317 134 ARTLG--INQLIVA----INKMDAVN 153 (425)
T ss_pred HHHcC--CCeEEEE----EEcccccc
Confidence 55442 1357788 89999976
No 191
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.44 E-value=0.00066 Score=65.43 Aligned_cols=24 Identities=21% Similarity=0.580 Sum_probs=22.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+|.+||..+||||||+.+|.|...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~ 26 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI 26 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC
Confidence 689999999999999999999653
No 192
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.44 E-value=0.00046 Score=71.53 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=41.6
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~lar~~DP~g~RtigVdLPG 208 (775)
..+.+.|+||..+ .+.+...|.+..+++|+++...+.+ +.+ ...+..+++..+ +...+.|
T Consensus 62 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilv---- 123 (219)
T PLN03071 62 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLC---- 123 (219)
T ss_pred EEEEEEECCCchh-------------hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEE----
Confidence 4788999999532 2346677888888887776544322 110 123333444443 4567777
Q ss_pred CcccCCCC
Q psy3395 209 MTKVPIGD 216 (775)
Q Consensus 209 lTK~D~~~ 216 (775)
.||.|+.+
T Consensus 124 gNK~Dl~~ 131 (219)
T PLN03071 124 GNKVDVKN 131 (219)
T ss_pred EEchhhhh
Confidence 79999853
No 193
>PTZ00258 GTP-binding protein; Provisional
Probab=97.40 E-value=0.00077 Score=75.50 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEE
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQ 73 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~ 73 (775)
..-.+|++||-.++|||||+++|+|...-...--.||+-|..-.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~ 62 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTAR 62 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEE
Confidence 44558999999999999999999998742223346888776543
No 194
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.40 E-value=0.00033 Score=67.27 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=22.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.++++|.+|+|||||+++|.|..+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 799999999999999999998765
No 195
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.38 E-value=0.0014 Score=68.09 Aligned_cols=115 Identities=16% Similarity=0.297 Sum_probs=69.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|||||+.++||||||..+++..| |..- -|++.
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y-----~pTi~----------------------------------------- 35 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSY-----VPTVF----------------------------------------- 35 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCcc-----CCccc-----------------------------------------
Confidence 589999999999999999998876 4221 11100
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--HHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--DALQI 190 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~~l~l 190 (775)
..+ ...+.+. .....|.|.|++|-. ....+...|+.+.+++||+....+.+ +.+- .....
T Consensus 36 ~~~---~~~~~~~-~~~v~L~iwDt~G~e-------------~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~ 98 (222)
T cd04173 36 ENY---TASFEID-KRRIELNMWDTSGSS-------------YYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGE 98 (222)
T ss_pred cce---EEEEEEC-CEEEEEEEEeCCCcH-------------HHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 000 0112222 123478899999942 23345566888888887776644432 1111 12233
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+...|. ...+.| .||.|+.+.
T Consensus 99 ~~~~~~~-~piiLV----gnK~DL~~~ 120 (222)
T cd04173 99 TQEFCPN-AKVVLV----GCKLDMRTD 120 (222)
T ss_pred HHhhCCC-CCEEEE----EECcccccc
Confidence 4444453 578888 899999754
No 196
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.36 E-value=0.00065 Score=66.88 Aligned_cols=24 Identities=21% Similarity=0.581 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|+|||++++||||+++.++...|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~ 25 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999986654
No 197
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.36 E-value=0.00079 Score=74.62 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccEE
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLV 71 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~~ 71 (775)
.+|.+||-.++|||||+++|+|... ..+. ..||+-|..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~nypftTi~p~~ 41 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNV 41 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-eecccccccccceE
Confidence 5799999999999999999999873 3333 468887753
No 198
>CHL00071 tufA elongation factor Tu
Probab=97.34 E-value=0.00073 Score=76.73 Aligned_cols=127 Identities=19% Similarity=0.248 Sum_probs=69.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+++|...+|||||+++|++..- .. ..+.- ..+...+....|. .
T Consensus 14 ~i~i~Gh~d~GKSTL~~~Ll~~~~-~~----~~~~~--------------------~~~~~~d~~~~e~----------~ 58 (409)
T CHL00071 14 NIGTIGHVDHGKTTLTAAITMTLA-AK----GGAKA--------------------KKYDEIDSAPEEK----------A 58 (409)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-cc----ccccc--------------------cccccccCChhhh----------c
Confidence 489999999999999999997531 11 11100 0000111111111 1
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--HHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--ALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~l~la 191 (775)
.+++-+....... ..-..++|||+||.. ..++.++.. +...+.++ .|++|...+..++ .+.++
T Consensus 59 rg~T~~~~~~~~~-~~~~~~~~iDtPGh~------------~~~~~~~~~-~~~~D~~i-lVvda~~g~~~qt~~~~~~~ 123 (409)
T CHL00071 59 RGITINTAHVEYE-TENRHYAHVDCPGHA------------DYVKNMITG-AAQMDGAI-LVVSAADGPMPQTKEHILLA 123 (409)
T ss_pred CCEeEEccEEEEc-cCCeEEEEEECCChH------------HHHHHHHHH-HHhCCEEE-EEEECCCCCcHHHHHHHHHH
Confidence 2333232222222 233468899999942 245555444 44555554 4666766654443 45555
Q ss_pred HhcCCCCCc-ceeccCCCCcccCCCCC
Q psy3395 192 KQVDPDVLN-LTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 192 r~~DP~g~R-tigVdLPGlTK~D~~~~ 217 (775)
+.. |.+ .|.| +||+|+.+.
T Consensus 124 ~~~---g~~~iIvv----vNK~D~~~~ 143 (409)
T CHL00071 124 KQV---GVPNIVVF----LNKEDQVDD 143 (409)
T ss_pred HHc---CCCEEEEE----EEccCCCCH
Confidence 543 444 6788 999999864
No 199
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.33 E-value=0.00083 Score=67.48 Aligned_cols=115 Identities=17% Similarity=0.273 Sum_probs=67.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|||+.++|||||+..+++-.| +... ..|-. ..
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~-~~T~g---~~---------------------------------------- 36 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF-DEDY-IQTLG---VN---------------------------------------- 36 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCC-CCccc---eE----------------------------------------
Confidence 589999999999999999988776 2110 11100 00
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-cc-hHHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-AT-SDALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-~~-s~~l~la 191 (775)
+. .-.+.+.+ ....|.+.|++|-. ..+.+...|+.+.+.+++++-..+.+- .+ ...+..+
T Consensus 37 --~~--~~~i~~~~-~~~~l~iwDt~G~~-------------~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~ 98 (182)
T cd04128 37 --FM--EKTISIRG-TEITFSIWDLGGQR-------------EFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQA 98 (182)
T ss_pred --EE--EEEEEECC-EEEEEEEEeCCCch-------------hHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 00 01112221 12467899999842 234577788888888877665433221 11 1344555
Q ss_pred HhcCCCCCcceeccCCCCcccCCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
++..|.... ++| .||.|+..
T Consensus 99 ~~~~~~~~p-ilV----gnK~Dl~~ 118 (182)
T cd04128 99 RGFNKTAIP-ILV----GTKYDLFA 118 (182)
T ss_pred HHhCCCCCE-EEE----EEchhccc
Confidence 555554433 778 89999864
No 200
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.33 E-value=0.00099 Score=65.55 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..|+|+|+.++|||||+..+.+..|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~ 26 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF 26 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4699999999999999999998776
No 201
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.33 E-value=0.00089 Score=71.97 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPR 60 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr 60 (775)
..+++|||.+++||||++|+|+|.....+
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~ 146 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKV 146 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccc
Confidence 45799999999999999999998765443
No 202
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.31 E-value=0.00065 Score=66.81 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=22.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|+|+|..++||||++..+.+-.|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~ 25 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998876
No 203
>PRK12289 GTPase RsgA; Reviewed
Probab=97.30 E-value=0.00055 Score=75.95 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.+||+|..++|||||||+|.|..-
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 489999999999999999998653
No 204
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.30 E-value=0.002 Score=68.08 Aligned_cols=24 Identities=29% Similarity=0.774 Sum_probs=22.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|+|||+.++||||+++.+++-.|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f 25 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF 25 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999988776
No 205
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.30 E-value=0.00078 Score=67.83 Aligned_cols=115 Identities=21% Similarity=0.315 Sum_probs=67.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|||+.++|||||+..+++-.| |... -|+..
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~-~~~~-----~~t~~----------------------------------------- 34 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF-PQVY-----EPTVF----------------------------------------- 34 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCcc-----CCcce-----------------------------------------
Confidence 589999999999999999998776 3210 01100
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--HHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--DALQI 190 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~~l~l 190 (775)
..+. ..+.+.+ .-..|.|.|+||-.. .+.+...|....+++||+..-.+.+ +.+. ..+..
T Consensus 35 ~~~~---~~i~~~~-~~~~l~i~Dt~G~~~-------------~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~ 97 (189)
T cd04134 35 ENYV---HDIFVDG-LHIELSLWDTAGQEE-------------FDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGE 97 (189)
T ss_pred eeeE---EEEEECC-EEEEEEEEECCCChh-------------ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 0000 0111111 124688999999532 1234455778888888776543332 2222 23445
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
++...| +...+.| .||.|+.+.
T Consensus 98 i~~~~~-~~piilv----gNK~Dl~~~ 119 (189)
T cd04134 98 IREHCP-GVKLVLV----ALKCDLREA 119 (189)
T ss_pred HHHhCC-CCCEEEE----EEChhhccC
Confidence 555444 4567888 899999754
No 206
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.28 E-value=0.0006 Score=74.69 Aligned_cols=37 Identities=30% Similarity=0.287 Sum_probs=28.9
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccccccEE
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLV 71 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~ 71 (775)
|++||..|+||||++++|++..+-...--.||+-|.+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~ 37 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNV 37 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCcccccee
Confidence 5899999999999999999987522222358888764
No 207
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.0011 Score=75.09 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=45.3
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcc
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTK 211 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK 211 (775)
++.|||++|..+. .....+++..+. . ...+...+| |.+|+.. ..++.+.++.+.+.+. +=+| +||
T Consensus 271 d~VLIDTaGrsqr-----d~~~~~~l~~l~-~-~~~~~~~~L-Vl~at~~--~~~~~~~~~~f~~~~~-~~~I----~TK 335 (420)
T PRK14721 271 HMVLIDTVGMSQR-----DQMLAEQIAMLS-Q-CGTQVKHLL-LLNATSS--GDTLDEVISAYQGHGI-HGCI----ITK 335 (420)
T ss_pred CEEEecCCCCCcc-----hHHHHHHHHHHh-c-cCCCceEEE-EEcCCCC--HHHHHHHHHHhcCCCC-CEEE----EEe
Confidence 7889999998642 111222333221 1 122334444 4555542 3344555555554432 2356 799
Q ss_pred cCCCCChhcHHHHHhhcccc
Q psy3395 212 VPIGDQPADIEYQIKSMILQ 231 (775)
Q Consensus 212 ~D~~~~~~d~~~~l~~~~~~ 231 (775)
.|-...+-.+.+++...-.|
T Consensus 336 lDEt~~~G~~l~~~~~~~lP 355 (420)
T PRK14721 336 VDEAASLGIALDAVIRRKLV 355 (420)
T ss_pred eeCCCCccHHHHHHHHhCCC
Confidence 99887766666665544334
No 208
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.27 E-value=0.0007 Score=76.34 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEE
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLV 71 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~ 71 (775)
.+|++||..++|||||+++|++..+-...-..||+-|..
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999987633333568887765
No 209
>PRK00049 elongation factor Tu; Reviewed
Probab=97.26 E-value=0.0012 Score=74.71 Aligned_cols=126 Identities=17% Similarity=0.284 Sum_probs=69.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+++|.-.+|||||+++|++.. ...+.+. .+ .+...+..+.|.+
T Consensus 14 ni~iiGhvd~GKSTL~~~L~~~~-~~~g~~~-~~-----------------------~~~~~d~~~~E~~---------- 58 (396)
T PRK00049 14 NVGTIGHVDHGKTTLTAAITKVL-AKKGGAE-AK-----------------------AYDQIDKAPEEKA---------- 58 (396)
T ss_pred EEEEEeECCCCHHHHHHHHHHhh-hhccCCc-cc-----------------------chhhccCChHHHh----------
Confidence 48999999999999999999742 1111100 00 0000111122221
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~la 191 (775)
.+++-+.....+. ..-..++|||+||.. +.+.++... +...+.++| |++|...+..+ ..+.++
T Consensus 59 rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~------------~f~~~~~~~-~~~aD~~ll-VVDa~~g~~~qt~~~~~~~ 123 (396)
T PRK00049 59 RGITINTAHVEYE-TEKRHYAHVDCPGHA------------DYVKNMITG-AAQMDGAIL-VVSAADGPMPQTREHILLA 123 (396)
T ss_pred cCeEEeeeEEEEc-CCCeEEEEEECCCHH------------HHHHHHHhh-hccCCEEEE-EEECCCCCchHHHHHHHHH
Confidence 2233333333332 233468999999962 244555433 455665555 66666554433 356666
Q ss_pred HhcCCCCCcc-eeccCCCCcccCCCC
Q psy3395 192 KQVDPDVLNL-TLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 r~~DP~g~Rt-igVdLPGlTK~D~~~ 216 (775)
+.. |.+. |.| +||+|+.+
T Consensus 124 ~~~---g~p~iiVv----vNK~D~~~ 142 (396)
T PRK00049 124 RQV---GVPYIVVF----LNKCDMVD 142 (396)
T ss_pred HHc---CCCEEEEE----EeecCCcc
Confidence 654 4444 467 89999985
No 210
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.26 E-value=0.0029 Score=74.04 Aligned_cols=131 Identities=15% Similarity=0.279 Sum_probs=71.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCc-cccChHHHHHHHHHHHhhhcCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGK-KFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~-~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
.|++||..+||||||.|+|+-.. |...+...+= -.. .+. ...|+.+...+ + |
T Consensus 12 ni~IiGh~daGKTTL~e~Ll~~~------g~i~~~g~v~-~~~-----------~~~~~~~D~~~~E~~------r--g- 64 (526)
T PRK00741 12 TFAIISHPDAGKTTLTEKLLLFG------GAIQEAGTVK-GRK-----------SGRHATSDWMEMEKQ------R--G- 64 (526)
T ss_pred EEEEECCCCCCHHHHHHHHHHhC------CCccccceee-ccc-----------cCccccCCCcHHHHh------h--C-
Confidence 59999999999999999996321 1112211100 000 000 11344332211 0 1
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~l 190 (775)
-.++...+.++. .-..++|+|+||... ....+..++...+++|++| ++...+..+ ..++.
T Consensus 65 -iSi~~~~~~~~~---~~~~inliDTPG~~d-------------f~~~~~~~l~~aD~aIlVv-Da~~gv~~~t~~l~~~ 126 (526)
T PRK00741 65 -ISVTSSVMQFPY---RDCLINLLDTPGHED-------------FSEDTYRTLTAVDSALMVI-DAAKGVEPQTRKLMEV 126 (526)
T ss_pred -CceeeeeEEEEE---CCEEEEEEECCCchh-------------hHHHHHHHHHHCCEEEEEE-ecCCCCCHHHHHHHHH
Confidence 122333333333 234689999999632 1234566778788777665 454444333 34444
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
++. .+...+.+ ++|+|+..
T Consensus 127 ~~~---~~iPiiv~----iNK~D~~~ 145 (526)
T PRK00741 127 CRL---RDTPIFTF----INKLDRDG 145 (526)
T ss_pred HHh---cCCCEEEE----EECCcccc
Confidence 443 56778888 99999864
No 211
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.25 E-value=0.0014 Score=65.03 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFL 58 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~fl 58 (775)
.+.++++|.+++||||++++|++..+.
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~ 141 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVA 141 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCce
Confidence 357999999999999999999998763
No 212
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.25 E-value=0.0011 Score=68.53 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=18.7
Q ss_pred EEEEcCCCCchHHHHHHhhC
Q psy3395 35 IAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G 54 (775)
|+++|...+|||||+++|+.
T Consensus 2 v~i~Gh~~~GKttL~~~ll~ 21 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLY 21 (219)
T ss_pred EEEecCCCCChHHHHHHHHH
Confidence 79999999999999999964
No 213
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.23 E-value=0.001 Score=70.26 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
-.++++|..++|||||||+|.|..-
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 3689999999999999999998653
No 214
>PRK12288 GTPase RsgA; Reviewed
Probab=97.23 E-value=0.00091 Score=74.14 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+|+||..++|||||||+|.|..-
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccc
Confidence 89999999999999999998754
No 215
>PLN03126 Elongation factor Tu; Provisional
Probab=97.22 E-value=0.0011 Score=76.48 Aligned_cols=126 Identities=20% Similarity=0.265 Sum_probs=70.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+++|...+|||||+++|++..- .+..+.+- .+ ...|.. .++.+
T Consensus 83 ni~iiGhvd~GKSTLi~~Ll~~~~-----~i~~~~~~---------~~---------~~~D~~--~~Er~---------- 127 (478)
T PLN03126 83 NIGTIGHVDHGKTTLTAALTMALA-----SMGGSAPK---------KY---------DEIDAA--PEERA---------- 127 (478)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhh-----hhcccccc---------cc---------ccccCC--hhHHh----------
Confidence 389999999999999999997531 12122110 00 011211 11111
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~la 191 (775)
.+++-+.....+.. .-..++|||+||.. +.+.+|+... ...++.|| |++|...+..+ +.+.++
T Consensus 128 rGiTi~~~~~~~~~-~~~~i~liDtPGh~------------~f~~~~~~g~-~~aD~ail-VVda~~G~~~qt~e~~~~~ 192 (478)
T PLN03126 128 RGITINTATVEYET-ENRHYAHVDCPGHA------------DYVKNMITGA-AQMDGAIL-VVSGADGPMPQTKEHILLA 192 (478)
T ss_pred CCeeEEEEEEEEec-CCcEEEEEECCCHH------------HHHHHHHHHH-hhCCEEEE-EEECCCCCcHHHHHHHHHH
Confidence 22332322222322 33478999999952 2455554443 45565555 56666555444 356666
Q ss_pred HhcCCCCC-cceeccCCCCcccCCCC
Q psy3395 192 KQVDPDVL-NLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 r~~DP~g~-RtigVdLPGlTK~D~~~ 216 (775)
+.. |. +.|.| +||+|+.+
T Consensus 193 ~~~---gi~~iIvv----vNK~Dl~~ 211 (478)
T PLN03126 193 KQV---GVPNMVVF----LNKQDQVD 211 (478)
T ss_pred HHc---CCCeEEEE----EecccccC
Confidence 654 44 46788 89999986
No 216
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.22 E-value=0.008 Score=67.09 Aligned_cols=40 Identities=30% Similarity=0.367 Sum_probs=30.3
Q ss_pred HHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccC
Q psy3395 18 QDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS 62 (775)
Q Consensus 18 ~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~ 62 (775)
+|.-.+.|-+. .|.|||.-.+||||++++++|.-.+|-=+
T Consensus 8 kDIa~RT~G~I-----yIGvvGpvrtGKSTfIn~fm~q~VlP~i~ 47 (492)
T TIGR02836 8 KDIAERTQGDI-----YIGVVGPVRTGKSTFIKKFMELLVLPNIS 47 (492)
T ss_pred HHHHHHhCCcE-----EEEEEcCCCCChHHHHHHHHhhhcccccc
Confidence 34445555442 49999999999999999999987777443
No 217
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.21 E-value=0.0017 Score=64.58 Aligned_cols=115 Identities=19% Similarity=0.278 Sum_probs=68.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|+|+.++||||++..+++-.| +..- .|+...
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f-~~~~-----~~t~~~---------------------------------------- 36 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAF-PGEY-----IPTVFD---------------------------------------- 36 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCcC-----CCccee----------------------------------------
Confidence 589999999999999999998765 3211 111000
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--HHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--DALQI 190 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~~l~l 190 (775)
.+ ...+.+.+ ....|.+.|+||-.. ...+...|+++.+++|++....+.+ +.+- ..+..
T Consensus 37 -~~---~~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~ 98 (174)
T cd01871 37 -NY---SANVMVDG-KPVNLGLWDTAGQED-------------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE 98 (174)
T ss_pred -ee---EEEEEECC-EEEEEEEEECCCchh-------------hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 00 01111211 124678999999422 2345667888899888877654432 1111 12344
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+...| ....+.| .||.|+.+.
T Consensus 99 ~~~~~~-~~piilv----gnK~Dl~~~ 120 (174)
T cd01871 99 VRHHCP-NTPIILV----GTKLDLRDD 120 (174)
T ss_pred HHHhCC-CCCEEEE----eeChhhccC
Confidence 444444 4577788 899998643
No 218
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.20 E-value=0.002 Score=76.47 Aligned_cols=71 Identities=20% Similarity=0.363 Sum_probs=41.6
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhc-cccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCc
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITK-ETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMT 210 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~-~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlT 210 (775)
.+.++|+||...... ... + +.+...|+.. .-.+++.|++++. + ...+.+..++...+.+.+.| +|
T Consensus 42 ~i~lvDtPG~~~~~~--~s~--~---e~v~~~~l~~~~aDvvI~VvDat~-l--er~l~l~~ql~~~~~PiIIV----lN 107 (591)
T TIGR00437 42 DIEIVDLPGIYSLTT--FSL--E---EEVARDYLLNEKPDLVVNVVDASN-L--ERNLYLTLQLLELGIPMILA----LN 107 (591)
T ss_pred EEEEEECCCccccCc--cch--H---HHHHHHHHhhcCCCEEEEEecCCc-c--hhhHHHHHHHHhcCCCEEEE----Ee
Confidence 468999999865321 111 1 2244556542 3345666666654 2 22344444444457889999 99
Q ss_pred ccCCCC
Q psy3395 211 KVPIGD 216 (775)
Q Consensus 211 K~D~~~ 216 (775)
|.|+.+
T Consensus 108 K~Dl~~ 113 (591)
T TIGR00437 108 LVDEAE 113 (591)
T ss_pred hhHHHH
Confidence 999864
No 219
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.20 E-value=0.0061 Score=61.77 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=42.8
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~lar~~DP~g~RtigVdLPG 208 (775)
..|.|.|+||-. ..+.+...|.+..+++||++...+.. +.+ ...+..+++.-| +...+.|
T Consensus 55 ~~l~iwDt~G~~-------------~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilV---- 116 (189)
T cd04121 55 VKLQLWDTSGQG-------------RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILV---- 116 (189)
T ss_pred EEEEEEeCCCcH-------------HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEE----
Confidence 467899999952 23557788999998888776544321 111 123444444444 3566777
Q ss_pred CcccCCCC
Q psy3395 209 MTKVPIGD 216 (775)
Q Consensus 209 lTK~D~~~ 216 (775)
-||.|+.+
T Consensus 117 GNK~DL~~ 124 (189)
T cd04121 117 GNRLHLAF 124 (189)
T ss_pred EECccchh
Confidence 79999864
No 220
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.20 E-value=0.0021 Score=67.38 Aligned_cols=116 Identities=14% Similarity=0.224 Sum_probs=71.0
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
.-.|||||+.++||||+|..+++-.| +.. -.|+...
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~-----y~pTi~~-------------------------------------- 48 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY-PET-----YVPTVFE-------------------------------------- 48 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC-CCC-----cCCceee--------------------------------------
Confidence 34699999999999999999998876 321 1122100
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc--hHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT--SDAL 188 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~--s~~l 188 (775)
.+. ..+.+.+ ....|.|.|++|-. ..+.+...|+.+.+++||+....+.+ +.+ ...+
T Consensus 49 ---~~~---~~i~~~~-~~v~l~iwDTaG~e-------------~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~ 108 (232)
T cd04174 49 ---NYT---AGLETEE-QRVELSLWDTSGSP-------------YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWK 108 (232)
T ss_pred ---eeE---EEEEECC-EEEEEEEEeCCCch-------------hhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHH
Confidence 000 0111211 22468899999942 23556778999999887766544332 111 1234
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
..+++..|. ...++| -||.|+.+
T Consensus 109 ~~i~~~~~~-~piilV----gNK~DL~~ 131 (232)
T cd04174 109 AEIMDYCPS-TRILLI----GCKTDLRT 131 (232)
T ss_pred HHHHHhCCC-CCEEEE----EECccccc
Confidence 555655553 567888 89999864
No 221
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.20 E-value=0.0023 Score=75.92 Aligned_cols=125 Identities=19% Similarity=0.279 Sum_probs=72.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC-CccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD-FLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~-flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
-|++||...+|||||+++|+... .+.+ .+.++. ...|..+..++ .|
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~-~~~v~~-----------------------~~~D~~~~Ere--------rG- 49 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRA-NEAVAE-----------------------RVMDSNDLERE--------RG- 49 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcc-ccccee-----------------------ecccCchHHHh--------CC-
Confidence 38999999999999999998421 0111 111111 12233222111 01
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~l 190 (775)
-.+......++. .-..++|+|+||... ....+..+++..++++|+|. |......+ ..+..
T Consensus 50 -iTI~~~~~~v~~---~~~kinlIDTPGh~D-------------F~~ev~~~l~~aD~alLVVD-a~~G~~~qT~~~l~~ 111 (594)
T TIGR01394 50 -ITILAKNTAIRY---NGTKINIVDTPGHAD-------------FGGEVERVLGMVDGVLLLVD-ASEGPMPQTRFVLKK 111 (594)
T ss_pred -ccEEeeeEEEEE---CCEEEEEEECCCHHH-------------HHHHHHHHHHhCCEEEEEEe-CCCCCcHHHHHHHHH
Confidence 112222233333 235789999999522 23456788888888877665 44444333 45666
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
++. .+.+.|.| +||+|+.+
T Consensus 112 a~~---~~ip~IVv----iNKiD~~~ 130 (594)
T TIGR01394 112 ALE---LGLKPIVV----INKIDRPS 130 (594)
T ss_pred HHH---CCCCEEEE----EECCCCCC
Confidence 666 34567888 99999864
No 222
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.20 E-value=0.0018 Score=65.16 Aligned_cols=115 Identities=17% Similarity=0.294 Sum_probs=70.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|||||+.++|||||+..+++-.| +..- -|+...
T Consensus 7 KivvvGd~~vGKTsli~~~~~~~f-~~~~-----~pT~~~---------------------------------------- 40 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDCF-PENY-----VPTVFE---------------------------------------- 40 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCcc-----CCceee----------------------------------------
Confidence 599999999999999999998876 3211 111100
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc--hHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT--SDALQI 190 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~--s~~l~l 190 (775)
.+. ..+.+. .....|.|.|++|-. ..+.+...|+++.+++||+..-.+.+ +.+ ...+..
T Consensus 41 -~~~---~~~~~~-~~~~~l~iwDtaG~e-------------~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~ 102 (182)
T cd04172 41 -NYT---ASFEID-TQRIELSLWDTSGSP-------------YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE 102 (182)
T ss_pred -eeE---EEEEEC-CEEEEEEEEECCCch-------------hhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 000 111111 123468899999842 23456677899999888876643321 222 233445
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+++..|. ...+.| -||.|+.+.
T Consensus 103 i~~~~~~-~piilV----gNK~DL~~~ 124 (182)
T cd04172 103 IQEFCPN-TKMLLV----GCKSDLRTD 124 (182)
T ss_pred HHHHCCC-CCEEEE----eEChhhhcC
Confidence 5666663 567778 799998643
No 223
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.19 E-value=0.0023 Score=76.01 Aligned_cols=128 Identities=18% Similarity=0.312 Sum_probs=73.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
-|++||..++|||||+++|+... |..+++.. +..+.|..+..++ .|
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~t------g~i~~~~~------------------~~~~lD~~~~Ere--------rG-- 54 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELT------GTLSEREM------------------KAQVLDSMDLERE--------RG-- 54 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc------CCCccccc------------------ccccccCchHHhh--------cC--
Confidence 58999999999999999998532 22222210 1122222221111 01
Q ss_pred CcccccCeEEEEec--CCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--HHH
Q psy3395 114 KGISNVPINLRVYS--PNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--ALQ 189 (775)
Q Consensus 114 ~~~s~~~i~l~i~~--p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~l~ 189 (775)
-.+....+.+.... .....++|+|+||... ....+..|+...+++||+| ++......+. .+.
T Consensus 55 iTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d-------------F~~~v~~sl~~aD~aILVV-Das~gv~~qt~~~~~ 120 (600)
T PRK05433 55 ITIKAQAVRLNYKAKDGETYILNLIDTPGHVD-------------FSYEVSRSLAACEGALLVV-DASQGVEAQTLANVY 120 (600)
T ss_pred CcccccEEEEEEEccCCCcEEEEEEECCCcHH-------------HHHHHHHHHHHCCEEEEEE-ECCCCCCHHHHHHHH
Confidence 12223334444432 1235689999999743 2345677888888776654 5555444333 233
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+.. .+...+.| +||+|+.+
T Consensus 121 ~~~~---~~lpiIvV----iNKiDl~~ 140 (600)
T PRK05433 121 LALE---NDLEIIPV----LNKIDLPA 140 (600)
T ss_pred HHHH---CCCCEEEE----EECCCCCc
Confidence 3333 35568889 99999864
No 224
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.19 E-value=0.0015 Score=65.46 Aligned_cols=115 Identities=17% Similarity=0.289 Sum_probs=69.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|||||+.++|||||+..+++-.| |... .|+.-. .
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~------~--------------------------------- 37 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETY-----VPTVFE------N--------------------------------- 37 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCc-----CCceEE------E---------------------------------
Confidence 599999999999999999998876 4321 122100 0
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc--hHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT--SDALQI 190 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~--s~~l~l 190 (775)
++ ..+.+.+ ....|.|.|+||-.+ .+.+...|.++.+.+||+..-.+.+ +.+ ......
T Consensus 38 --~~---~~~~~~~-~~~~l~iwDt~G~~~-------------~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~ 98 (178)
T cd04131 38 --YT---ASFEIDE-QRIELSLWDTSGSPY-------------YDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGE 98 (178)
T ss_pred --EE---EEEEECC-EEEEEEEEECCCchh-------------hhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHH
Confidence 00 1112222 234688999999422 2335566888888877766543322 111 233445
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+++..|. ...+.| -||.|+.+.
T Consensus 99 i~~~~~~-~~iilV----gnK~DL~~~ 120 (178)
T cd04131 99 IQEFCPN-TKVLLV----GCKTDLRTD 120 (178)
T ss_pred HHHHCCC-CCEEEE----EEChhhhcC
Confidence 5555563 567778 799998653
No 225
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.17 E-value=0.0014 Score=64.81 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=21.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+|+++|+.++||||++..+++-.|
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~ 25 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999987666
No 226
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.15 E-value=0.0027 Score=72.47 Aligned_cols=82 Identities=16% Similarity=0.297 Sum_probs=45.8
Q ss_pred cccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC--ccc--hHHHHH
Q psy3395 115 GISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD--LAT--SDALQI 190 (775)
Q Consensus 115 ~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d--~~~--s~~l~l 190 (775)
+++-+.....+... -..++|+|+||.. ..++.++. ++...+.+||+|-..+.+ ... ..-+.+
T Consensus 70 g~Tid~~~~~~~~~-~~~i~iiDtpGh~------------~f~~~~~~-~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~ 135 (426)
T TIGR00483 70 GVTIDVAHWKFETD-KYEVTIVDCPGHR------------DFIKNMIT-GASQADAAVLVVAVGDGEFEVQPQTREHAFL 135 (426)
T ss_pred CceEEEEEEEEccC-CeEEEEEECCCHH------------HHHHHHHh-hhhhCCEEEEEEECCCCCcccCCchHHHHHH
Confidence 34444333344333 3479999999931 12333433 557778777765544432 222 223445
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
++... ..+.+.| +||.|+.+
T Consensus 136 ~~~~~--~~~iIVv----iNK~Dl~~ 155 (426)
T TIGR00483 136 ARTLG--INQLIVA----INKMDSVN 155 (426)
T ss_pred HHHcC--CCeEEEE----EEChhccC
Confidence 55543 2467888 99999975
No 227
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.13 E-value=0.0023 Score=64.66 Aligned_cols=115 Identities=19% Similarity=0.249 Sum_probs=68.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|||+.++|||||+..++.-.| +... .|+.-.
T Consensus 5 ki~~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~---------------------------------------- 38 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTNAF-PKEY-----IPTVFD---------------------------------------- 38 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcCC-----CCceEe----------------------------------------
Confidence 699999999999999999998776 3211 121100
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--HHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--DALQI 190 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~~l~l 190 (775)
.+. ..+.+. .....|.+.|+||-. ..+.+...|..+.+++|++..-.+.+ +.+- ..+..
T Consensus 39 -~~~---~~~~~~-~~~~~l~i~Dt~G~e-------------~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~ 100 (191)
T cd01875 39 -NYS---AQTAVD-GRTVSLNLWDTAGQE-------------EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPE 100 (191)
T ss_pred -eeE---EEEEEC-CEEEEEEEEECCCch-------------hhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 000 011222 123568899999942 34557778999999888876543322 1111 12232
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
++...| +...+.| -||.|+.+.
T Consensus 101 i~~~~~-~~piilv----gNK~DL~~~ 122 (191)
T cd01875 101 VCHHCP-NVPILLV----GTKKDLRND 122 (191)
T ss_pred HHhhCC-CCCEEEE----EeChhhhcC
Confidence 333334 3566777 799998654
No 228
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.13 E-value=0.0025 Score=76.49 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=41.8
Q ss_pred CCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHHHhcCCCCCcceeccC
Q psy3395 129 NVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIAKQVDPDVLNLTLVDL 206 (775)
Q Consensus 129 ~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~lar~~DP~g~RtigVdL 206 (775)
.-..++|||+||.. ..+++|+.. +...+.+ |.|++|+..+..+ +.+.+++.... .+.+.|
T Consensus 102 ~~~~~~liDtPG~~------------~f~~~~~~~-~~~aD~~-llVvda~~g~~~~t~e~~~~~~~~~~--~~iivv-- 163 (632)
T PRK05506 102 PKRKFIVADTPGHE------------QYTRNMVTG-ASTADLA-IILVDARKGVLTQTRRHSFIASLLGI--RHVVLA-- 163 (632)
T ss_pred CCceEEEEECCChH------------HHHHHHHHH-HHhCCEE-EEEEECCCCccccCHHHHHHHHHhCC--CeEEEE--
Confidence 34578999999942 234455543 5556655 4466676555333 45566665431 456778
Q ss_pred CCCcccCCCC
Q psy3395 207 PGMTKVPIGD 216 (775)
Q Consensus 207 PGlTK~D~~~ 216 (775)
+||+|+.+
T Consensus 164 --vNK~D~~~ 171 (632)
T PRK05506 164 --VNKMDLVD 171 (632)
T ss_pred --EEeccccc
Confidence 89999975
No 229
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.13 E-value=0.0017 Score=70.13 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCcccc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRG 61 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~ 61 (775)
-.+++|||..++||||++|+|+|.....++
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~ 150 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTG 150 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccC
Confidence 457999999999999999999997654433
No 230
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.10 E-value=0.00038 Score=64.05 Aligned_cols=24 Identities=33% Similarity=0.754 Sum_probs=22.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+|+|+|+.++||||||++|.+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999876
No 231
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0022 Score=75.10 Aligned_cols=118 Identities=19% Similarity=0.315 Sum_probs=68.8
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
.++++||..++||||+.|+|+|... -+|. | +|..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q-~VgN------------------w------pGvT--------------------- 37 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ-KVGN------------------W------PGVT--------------------- 37 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc-eecC------------------C------CCee---------------------
Confidence 4599999999999999999999863 3333 1 1100
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccc-cEEEEEecCCC-CccchHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKET-CLILAVTPANT-DLATSDALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~-~iILaV~~a~~-d~~~s~~l~l 190 (775)
+-...=.++.. .-..++|||||+-.-... +.| +....+|+.+.+ .+|+.|+.|.+ +..=-=.+++
T Consensus 38 ---VEkkeg~~~~~---~~~i~ivDLPG~YSL~~~--S~D-----E~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQL 104 (653)
T COG0370 38 ---VEKKEGKLKYK---GHEIEIVDLPGTYSLTAY--SED-----EKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQL 104 (653)
T ss_pred ---EEEEEEEEEec---CceEEEEeCCCcCCCCCC--Cch-----HHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHH
Confidence 00000011111 124679999999654221 222 235667776533 67777776642 2211123444
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.. -|..++.+ ++++|...+
T Consensus 105 lE----~g~p~ila----LNm~D~A~~ 123 (653)
T COG0370 105 LE----LGIPMILA----LNMIDEAKK 123 (653)
T ss_pred HH----cCCCeEEE----eccHhhHHh
Confidence 43 46678999 999998754
No 232
>PRK12739 elongation factor G; Reviewed
Probab=97.10 E-value=0.0022 Score=77.65 Aligned_cols=131 Identities=18% Similarity=0.148 Sum_probs=72.8
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
+-.|+|||..++|||||+|+|+... |...+. ... ..+....|+... |.+
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~------g~~~~~------~~v---------~~~~~~~D~~~~--E~~-------- 56 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYT------GKSHKI------GEV---------HDGAATMDWMEQ--EQE-------- 56 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhC------CCcccc------ccc---------cCCccccCCChh--Hhh--------
Confidence 4569999999999999999997532 100010 000 001122333221 111
Q ss_pred CCCccccc--CeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHH
Q psy3395 112 SNKGISNV--PINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQ 189 (775)
Q Consensus 112 ~~~~~s~~--~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~ 189 (775)
.+++-+ .+.++. +-..++|||+||... ....+..++...+.+|+ |++|...+..++ ..
T Consensus 57 --rgiti~~~~~~~~~---~~~~i~liDTPG~~~-------------f~~e~~~al~~~D~~il-VvDa~~g~~~qt-~~ 116 (691)
T PRK12739 57 --RGITITSAATTCFW---KGHRINIIDTPGHVD-------------FTIEVERSLRVLDGAVA-VFDAVSGVEPQS-ET 116 (691)
T ss_pred --cCCCccceeEEEEE---CCEEEEEEcCCCHHH-------------HHHHHHHHHHHhCeEEE-EEeCCCCCCHHH-HH
Confidence 223322 233333 345789999999632 11236666776665555 566666654443 23
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+++.+...|...|.+ ++|+|+.+.
T Consensus 117 i~~~~~~~~~p~iv~----iNK~D~~~~ 140 (691)
T PRK12739 117 VWRQADKYGVPRIVF----VNKMDRIGA 140 (691)
T ss_pred HHHHHHHcCCCEEEE----EECCCCCCC
Confidence 333333456777888 999999853
No 233
>PRK12735 elongation factor Tu; Reviewed
Probab=97.09 E-value=0.0018 Score=73.24 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.|+++|.-.+|||||+++|++.
T Consensus 14 ~i~iiGhvd~GKSTL~~~L~~~ 35 (396)
T PRK12735 14 NVGTIGHVDHGKTTLTAAITKV 35 (396)
T ss_pred EEEEECcCCCCHHHHHHHHHHh
Confidence 4899999999999999999984
No 234
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.07 E-value=0.0034 Score=76.04 Aligned_cols=131 Identities=17% Similarity=0.162 Sum_probs=72.3
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
+-.|+|||..++|||||+|+|++.. |...| . ... ..+....|+... +.+
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~------g~~~~-~-----~~~---------~~g~~~~D~~~~--e~~-------- 58 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYT------GRIHK-I-----GEV---------HDGAATMDWMEQ--EKE-------- 58 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhC------CCccc-c-----ccc---------cCCccccCCCHH--HHh--------
Confidence 5579999999999999999997532 11111 0 000 001122233221 111
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~ 189 (775)
.+++-+.....+... -..++|+|+||.... ...+..++...+.+||. +++......+ ..+.
T Consensus 59 --rgiti~~~~~~~~~~-~~~i~liDTPG~~~~-------------~~~~~~~l~~~D~~ilV-vda~~g~~~~~~~~~~ 121 (689)
T TIGR00484 59 --RGITITSAATTVFWK-GHRINIIDTPGHVDF-------------TVEVERSLRVLDGAVAV-LDAVGGVQPQSETVWR 121 (689)
T ss_pred --cCCCEecceEEEEEC-CeEEEEEECCCCcch-------------hHHHHHHHHHhCEEEEE-EeCCCCCChhHHHHHH
Confidence 122322222223222 347899999998531 11356677777766665 4565544433 3444
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.++. .+...+.| ++|+|+...
T Consensus 122 ~~~~---~~~p~ivv----iNK~D~~~~ 142 (689)
T TIGR00484 122 QANR---YEVPRIAF----VNKMDKTGA 142 (689)
T ss_pred HHHH---cCCCEEEE----EECCCCCCC
Confidence 4443 45677888 999999853
No 235
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.04 E-value=0.0034 Score=60.79 Aligned_cols=116 Identities=18% Similarity=0.353 Sum_probs=69.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|||+.++||||++..+.+..| |-.. ..|-. ..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~-~~t~~-~~------------------------------------------ 35 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENY-IPTIG-ID------------------------------------------ 35 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSS-ETTSS-EE------------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-cccc-ccccc-cc------------------------------------------
Confidence 489999999999999999999876 3221 11110 00
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-c-cchHHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-L-ATSDALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~-~~s~~l~la 191 (775)
.....+.+. .....|.|.|+||-.. ...+...++.+.+++|++....+.+ + .-...+...
T Consensus 36 ----~~~~~~~~~-~~~~~l~i~D~~g~~~-------------~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i 97 (162)
T PF00071_consen 36 ----SYSKEVSID-GKPVNLEIWDTSGQER-------------FDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEI 97 (162)
T ss_dssp ----EEEEEEEET-TEEEEEEEEEETTSGG-------------GHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHH
T ss_pred ----ccccccccc-cccccccccccccccc-------------ccccccccccccccccccccccccccccccccccccc
Confidence 000111111 2334688999998421 2335567888888888776543321 1 112345555
Q ss_pred HhcCCCCCcceeccCCCCcccCCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+...|.....+.| -||.|+.+
T Consensus 98 ~~~~~~~~~iivv----g~K~D~~~ 118 (162)
T PF00071_consen 98 QKYKPEDIPIIVV----GNKSDLSD 118 (162)
T ss_dssp HHHSTTTSEEEEE----EETTTGGG
T ss_pred cccccccccceee----eccccccc
Confidence 6566644566677 69999875
No 236
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.04 E-value=0.0041 Score=61.45 Aligned_cols=25 Identities=40% Similarity=0.708 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
-.|++||+.++||||++..+++-.|
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f 29 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSF 29 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3689999999999999999999886
No 237
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.04 E-value=0.0024 Score=72.20 Aligned_cols=127 Identities=18% Similarity=0.274 Sum_probs=69.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+++|...+|||||+++|+|.. ...|.+ |+ . .....+....|.+
T Consensus 14 ~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~---~~-------------~--------~~~~~d~~~~E~~---------- 58 (394)
T TIGR00485 14 NIGTIGHVDHGKTTLTAAITTVL-AKEGGA---AA-------------R--------AYDQIDNAPEEKA---------- 58 (394)
T ss_pred EEEEEeecCCCHHHHHHHHHhhH-HHhhcc---cc-------------c--------ccccccCCHHHHh----------
Confidence 48999999999999999998752 111111 00 0 0001111222221
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~la 191 (775)
.+++-+...+.+.. .-..++|+|+||..+ .+.+++. -+...+.+|| |++|+..+..+ +.+.++
T Consensus 59 rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~------------f~~~~~~-~~~~~D~~il-Vvda~~g~~~qt~e~l~~~ 123 (394)
T TIGR00485 59 RGITINTAHVEYET-ENRHYAHVDCPGHAD------------YVKNMIT-GAAQMDGAIL-VVSATDGPMPQTREHILLA 123 (394)
T ss_pred cCcceeeEEEEEcC-CCEEEEEEECCchHH------------HHHHHHH-HHhhCCEEEE-EEECCCCCcHHHHHHHHHH
Confidence 23344444444433 234689999999521 3344433 2345566655 55666544333 345555
Q ss_pred HhcCCCCCc-ceeccCCCCcccCCCCC
Q psy3395 192 KQVDPDVLN-LTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 192 r~~DP~g~R-tigVdLPGlTK~D~~~~ 217 (775)
+.. |.. .|.| +||+|+.++
T Consensus 124 ~~~---gi~~iIvv----vNK~Dl~~~ 143 (394)
T TIGR00485 124 RQV---GVPYIVVF----LNKCDMVDD 143 (394)
T ss_pred HHc---CCCEEEEE----EEecccCCH
Confidence 543 444 4468 899999864
No 238
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.03 E-value=0.0026 Score=68.07 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=47.6
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHh--hccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFI--TKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi--~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPG 208 (775)
.++.|||+||.... ... .+++|. +++ .++.. ++.|.+|+. ..+++...++.+.+-+..- .|
T Consensus 155 ~D~ViIDt~Gr~~~----~~~----~l~el~-~~~~~~~~~~-~~LVl~a~~--~~~d~~~~~~~f~~~~~~~-~I---- 217 (270)
T PRK06731 155 VDYILIDTAGKNYR----ASE----TVEEMI-ETMGQVEPDY-ICLTLSASM--KSKDMIEIITNFKDIHIDG-IV---- 217 (270)
T ss_pred CCEEEEECCCCCcC----CHH----HHHHHH-HHHhhhCCCe-EEEEEcCcc--CHHHHHHHHHHhCCCCCCE-EE----
Confidence 47889999997431 111 233332 222 23443 455555543 2356777777777644333 45
Q ss_pred CcccCCCCChhcHHHHHhhcccc
Q psy3395 209 MTKVPIGDQPADIEYQIKSMILQ 231 (775)
Q Consensus 209 lTK~D~~~~~~d~~~~l~~~~~~ 231 (775)
+||.|-...+-.+..+....-.|
T Consensus 218 ~TKlDet~~~G~~l~~~~~~~~P 240 (270)
T PRK06731 218 FTKFDETASSGELLKIPAVSSAP 240 (270)
T ss_pred EEeecCCCCccHHHHHHHHHCcC
Confidence 69999888766666655443334
No 239
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.03 E-value=0.024 Score=64.33 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=43.3
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCc
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMT 210 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlT 210 (775)
.++.|||+||.... .....+.+..+. + ..+|..+ +.|++|... +++...++.+.-...-+-.| +|
T Consensus 183 ~DvViIDTaGr~~~-----d~~lm~El~~i~-~-~~~p~e~-lLVlda~~G---q~a~~~a~~F~~~~~~~g~I----lT 247 (429)
T TIGR01425 183 FDIIIVDTSGRHKQ-----EDSLFEEMLQVA-E-AIQPDNI-IFVMDGSIG---QAAEAQAKAFKDSVDVGSVI----IT 247 (429)
T ss_pred CCEEEEECCCCCcc-----hHHHHHHHHHHh-h-hcCCcEE-EEEeccccC---hhHHHHHHHHHhccCCcEEE----EE
Confidence 48899999996432 111222222222 1 2345544 455556543 44455555543222345577 89
Q ss_pred ccCCCCChhcHHHHHh
Q psy3395 211 KVPIGDQPADIEYQIK 226 (775)
Q Consensus 211 K~D~~~~~~d~~~~l~ 226 (775)
|.|-...+-.+..+..
T Consensus 248 KlD~~argG~aLs~~~ 263 (429)
T TIGR01425 248 KLDGHAKGGGALSAVA 263 (429)
T ss_pred CccCCCCccHHhhhHH
Confidence 9998777655544443
No 240
>PRK12736 elongation factor Tu; Reviewed
Probab=97.01 E-value=0.0024 Score=72.24 Aligned_cols=126 Identities=22% Similarity=0.329 Sum_probs=68.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+++|.-.+|||||+++|+|.. ...|.+ ++ ..| ...+....|.+
T Consensus 14 ni~i~Ghvd~GKSTL~~~L~~~~-~~~g~~---~~----------~~~-----------~~~d~~~~E~~---------- 58 (394)
T PRK12736 14 NIGTIGHVDHGKTTLTAAITKVL-AERGLN---QA----------KDY-----------DSIDAAPEEKE---------- 58 (394)
T ss_pred EEEEEccCCCcHHHHHHHHHhhh-hhhccc---cc----------cch-----------hhhcCCHHHHh----------
Confidence 38999999999999999999752 111110 00 000 00111112211
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~la 191 (775)
.+++-+........ .-..++|+|+||.. +.+.+++... ...++++| |+++...+..+ +.+.++
T Consensus 59 rg~T~~~~~~~~~~-~~~~i~~iDtPGh~------------~f~~~~~~~~-~~~d~~ll-Vvd~~~g~~~~t~~~~~~~ 123 (394)
T PRK12736 59 RGITINTAHVEYET-EKRHYAHVDCPGHA------------DYVKNMITGA-AQMDGAIL-VVAATDGPMPQTREHILLA 123 (394)
T ss_pred cCccEEEEeeEecC-CCcEEEEEECCCHH------------HHHHHHHHHH-hhCCEEEE-EEECCCCCchhHHHHHHHH
Confidence 22333333333322 34578999999942 2345554443 44555544 66676554443 456666
Q ss_pred HhcCCCCCc-ceeccCCCCcccCCCC
Q psy3395 192 KQVDPDVLN-LTLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 r~~DP~g~R-tigVdLPGlTK~D~~~ 216 (775)
+.. |.. .|.| +||+|+.+
T Consensus 124 ~~~---g~~~~Ivv----iNK~D~~~ 142 (394)
T PRK12736 124 RQV---GVPYLVVF----LNKVDLVD 142 (394)
T ss_pred HHc---CCCEEEEE----EEecCCcc
Confidence 654 444 5788 89999975
No 241
>PRK00007 elongation factor G; Reviewed
Probab=97.00 E-value=0.0035 Score=75.92 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=71.1
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
+-.|++||..++|||||+|+|+... |...+ +... ..+..+.|+.... .+
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~------g~~~~------~g~v---------~~~~~~~D~~~~E--~~-------- 58 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYT------GVNHK------IGEV---------HDGAATMDWMEQE--QE-------- 58 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhc------CCccc------cccc---------cCCcccCCCCHHH--Hh--------
Confidence 5579999999999999999997321 10001 0000 0011223333211 11
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIA 191 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~la 191 (775)
.+++-+.....+... -..++|||+||.... ..+ +.+-+...+++|| |++|...+..++ ..++
T Consensus 59 --rg~ti~~~~~~~~~~-~~~~~liDTPG~~~f------------~~e-v~~al~~~D~~vl-Vvda~~g~~~qt-~~~~ 120 (693)
T PRK00007 59 --RGITITSAATTCFWK-DHRINIIDTPGHVDF------------TIE-VERSLRVLDGAVA-VFDAVGGVEPQS-ETVW 120 (693)
T ss_pred --CCCCEeccEEEEEEC-CeEEEEEeCCCcHHH------------HHH-HHHHHHHcCEEEE-EEECCCCcchhh-HHHH
Confidence 223333322333222 357999999996321 111 3444444555544 556766665544 2333
Q ss_pred HhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+.+...|...|.+ ++|+|+.+.
T Consensus 121 ~~~~~~~~p~iv~----vNK~D~~~~ 142 (693)
T PRK00007 121 RQADKYKVPRIAF----VNKMDRTGA 142 (693)
T ss_pred HHHHHcCCCEEEE----EECCCCCCC
Confidence 3333456777888 999999854
No 242
>PRK13351 elongation factor G; Reviewed
Probab=97.00 E-value=0.0037 Score=75.75 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=72.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
.-.|+|||..++|||||+++|+... |...+. -.+ . .+....|+....+ + + |
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~------g~~~~~-~~v---~-----------~~~~~~d~~~~e~--~----r--~ 58 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYT------GKIHKM-GEV---E-----------DGTTVTDWMPQEQ--E----R--G 58 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhc------CCcccc-ccc---c-----------CCcccCCCCHHHH--h----c--C
Confidence 4569999999999999999998532 110000 000 0 0111233332111 0 0 1
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCcc--chHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLA--TSDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~--~s~~l~ 189 (775)
-.+......++. .-..+.|+|+||... ....+..++...+++||.| .+..... +...+.
T Consensus 59 --~ti~~~~~~~~~---~~~~i~liDtPG~~d-------------f~~~~~~~l~~aD~~ilVv-d~~~~~~~~~~~~~~ 119 (687)
T PRK13351 59 --ITIESAATSCDW---DNHRINLIDTPGHID-------------FTGEVERSLRVLDGAVVVF-DAVTGVQPQTETVWR 119 (687)
T ss_pred --CCcccceEEEEE---CCEEEEEEECCCcHH-------------HHHHHHHHHHhCCEEEEEE-eCCCCCCHHHHHHHH
Confidence 112222333433 245789999999632 2346778888888877755 4444332 223344
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.++. .+.+.+.| +||.|+..
T Consensus 120 ~~~~---~~~p~iiv----iNK~D~~~ 139 (687)
T PRK13351 120 QADR---YGIPRLIF----INKMDRVG 139 (687)
T ss_pred HHHh---cCCCEEEE----EECCCCCC
Confidence 4443 46677889 99999875
No 243
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.97 E-value=0.0022 Score=71.56 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
-.++|||.+++|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 379999999999999999999853
No 244
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.97 E-value=0.006 Score=63.58 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.3
Q ss_pred CCCCe-EEEEcCCCCchHHHHHHhhCC
Q psy3395 30 MDLPQ-IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 30 i~lP~-IvVvG~qSsGKSSvLeal~G~ 55 (775)
...|. |+|||..++|||||+++|.+.
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45555 899999999999999999874
No 245
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=96.94 E-value=0.0048 Score=61.78 Aligned_cols=115 Identities=22% Similarity=0.286 Sum_probs=70.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|||+|+.++||||++..++.-.| +... ..|=.
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~-~~Ti~--------------------------------------------- 35 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDY-IPTVF--------------------------------------------- 35 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCC-CCcce---------------------------------------------
Confidence 489999999999999999998766 3211 11100
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--HHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--DALQI 190 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~~l~l 190 (775)
..+. ..+.+.+ ....|.+.|++|-.+ .+.+...|+++.+++||+..-.+.. +.+. ..+..
T Consensus 36 ~~~~---~~~~~~~-~~v~l~i~Dt~G~~~-------------~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~ 98 (176)
T cd04133 36 DNFS---ANVSVDG-NTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPE 98 (176)
T ss_pred eeeE---EEEEECC-EEEEEEEEECCCCcc-------------ccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHH
Confidence 0000 1122222 235788999999532 2446667899999888876544322 2221 23444
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+++..+ ....+.| -||.|+.++
T Consensus 99 i~~~~~-~~piilv----gnK~Dl~~~ 120 (176)
T cd04133 99 LRHYAP-NVPIVLV----GTKLDLRDD 120 (176)
T ss_pred HHHhCC-CCCEEEE----EeChhhccC
Confidence 555544 3566777 799999754
No 246
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=96.92 E-value=0.0043 Score=63.63 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLP 59 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flP 59 (775)
.|++||+.++||||++..+++-.|.+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~ 27 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG 27 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 58999999999999999999988743
No 247
>PRK10218 GTP-binding protein; Provisional
Probab=96.92 E-value=0.0044 Score=73.53 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=44.4
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHHHhcCCCCCcceeccCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIAKQVDPDVLNLTLVDLP 207 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~lar~~DP~g~RtigVdLP 207 (775)
-..+.|+|+||... ....+..|++..+++||+|- +......+ ..+..+.. .|.+.+.|
T Consensus 67 ~~~inliDTPG~~d-------------f~~~v~~~l~~aDg~ILVVD-a~~G~~~qt~~~l~~a~~---~gip~IVv--- 126 (607)
T PRK10218 67 DYRINIVDTPGHAD-------------FGGEVERVMSMVDSVLLVVD-AFDGPMPQTRFVTKKAFA---YGLKPIVV--- 126 (607)
T ss_pred CEEEEEEECCCcch-------------hHHHHHHHHHhCCEEEEEEe-cccCccHHHHHHHHHHHH---cCCCEEEE---
Confidence 35789999999643 23356778888888877654 44443333 34555555 45677888
Q ss_pred CCcccCCCC
Q psy3395 208 GMTKVPIGD 216 (775)
Q Consensus 208 GlTK~D~~~ 216 (775)
++|+|+.+
T Consensus 127 -iNKiD~~~ 134 (607)
T PRK10218 127 -INKVDRPG 134 (607)
T ss_pred -EECcCCCC
Confidence 99999864
No 248
>PRK14974 cell division protein FtsY; Provisional
Probab=96.88 E-value=0.0058 Score=67.41 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=47.7
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCc
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMT 210 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlT 210 (775)
.++.|||+||.... +.+....++.++. ..+|+.++| |.+|.. .++++..++.+...-.-+-.| +|
T Consensus 223 ~DvVLIDTaGr~~~-----~~~lm~eL~~i~~--~~~pd~~iL-Vl~a~~---g~d~~~~a~~f~~~~~~~giI----lT 287 (336)
T PRK14974 223 IDVVLIDTAGRMHT-----DANLMDELKKIVR--VTKPDLVIF-VGDALA---GNDAVEQAREFNEAVGIDGVI----LT 287 (336)
T ss_pred CCEEEEECCCccCC-----cHHHHHHHHHHHH--hhCCceEEE-eecccc---chhHHHHHHHHHhcCCCCEEE----Ee
Confidence 37899999998642 2223333444332 235665554 556643 457777777654322234467 79
Q ss_pred ccCCCCChhcHHHHHh
Q psy3395 211 KVPIGDQPADIEYQIK 226 (775)
Q Consensus 211 K~D~~~~~~d~~~~l~ 226 (775)
|+|....+-.+..+..
T Consensus 288 KlD~~~~~G~~ls~~~ 303 (336)
T PRK14974 288 KVDADAKGGAALSIAY 303 (336)
T ss_pred eecCCCCccHHHHHHH
Confidence 9999877665555443
No 249
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.86 E-value=0.0011 Score=65.38 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
..+|++|..++|||||||+|+|..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 569999999999999999999975
No 250
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.84 E-value=0.0039 Score=70.89 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.|+|+|.-.+|||||+++|+|.
T Consensus 11 ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 11 NIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEccCCCCHHHHHHHhhCe
Confidence 3899999999999999999875
No 251
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=96.82 E-value=0.0052 Score=69.75 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.|+++|.-++|||||+++|+|.
T Consensus 6 ~i~iiG~~~~GKSTL~~~Lt~~ 27 (406)
T TIGR03680 6 NIGMVGHVDHGKTTLTKALTGV 27 (406)
T ss_pred EEEEEccCCCCHHHHHHHHhCe
Confidence 4899999999999999999885
No 252
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.013 Score=65.37 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=48.2
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCc
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMT 210 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlT 210 (775)
.++.|||+||.... .......+..++.. ..|..++|+ .+|+. ..+++...++.+...+. +-.| +|
T Consensus 321 ~DvVLIDTaGRs~k-----d~~lm~EL~~~lk~--~~PdevlLV-LsATt--k~~d~~~i~~~F~~~~i-dglI----~T 385 (436)
T PRK11889 321 VDYILIDTAGKNYR-----ASETVEEMIETMGQ--VEPDYICLT-LSASM--KSKDMIEIITNFKDIHI-DGIV----FT 385 (436)
T ss_pred CCEEEEeCccccCc-----CHHHHHHHHHHHhh--cCCCeEEEE-ECCcc--ChHHHHHHHHHhcCCCC-CEEE----EE
Confidence 47889999997431 11111122333322 235545444 55542 34566777777766432 3356 79
Q ss_pred ccCCCCChhcHHHHHhhcccc
Q psy3395 211 KVPIGDQPADIEYQIKSMILQ 231 (775)
Q Consensus 211 K~D~~~~~~d~~~~l~~~~~~ 231 (775)
|.|-...+-.+..++...-.|
T Consensus 386 KLDET~k~G~iLni~~~~~lP 406 (436)
T PRK11889 386 KFDETASSGELLKIPAVSSAP 406 (436)
T ss_pred cccCCCCccHHHHHHHHHCcC
Confidence 999888776666665543334
No 253
>PRK13796 GTPase YqeH; Provisional
Probab=96.80 E-value=0.0023 Score=71.56 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.++|||.+++|||||||+|.+.
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhh
Confidence 5999999999999999999864
No 254
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.74 E-value=0.011 Score=69.23 Aligned_cols=66 Identities=12% Similarity=0.211 Sum_probs=42.6
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc--hHHHHHHHhcCCCCCcceeccCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT--SDALQIAKQVDPDVLNLTLVDLP 207 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~--s~~l~lar~~DP~g~RtigVdLP 207 (775)
-..+.|+|+||... ....+..++...+++|++|-+ ...+.. ...++.++. .+...+.|
T Consensus 79 ~~~inliDTPG~~d-------------f~~~~~~~l~~aD~aIlVvDa-~~gv~~~t~~l~~~~~~---~~~Piivv--- 138 (527)
T TIGR00503 79 DCLVNLLDTPGHED-------------FSEDTYRTLTAVDNCLMVIDA-AKGVETRTRKLMEVTRL---RDTPIFTF--- 138 (527)
T ss_pred CeEEEEEECCChhh-------------HHHHHHHHHHhCCEEEEEEEC-CCCCCHHHHHHHHHHHh---cCCCEEEE---
Confidence 45788999999631 123456677888888776554 433332 345555554 34577888
Q ss_pred CCcccCCCC
Q psy3395 208 GMTKVPIGD 216 (775)
Q Consensus 208 GlTK~D~~~ 216 (775)
++|+|+..
T Consensus 139 -iNKiD~~~ 146 (527)
T TIGR00503 139 -MNKLDRDI 146 (527)
T ss_pred -EECccccC
Confidence 89999863
No 255
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=96.73 E-value=0.0065 Score=60.97 Aligned_cols=24 Identities=33% Similarity=0.650 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|+|+|+.++|||||+..|++-.|
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~ 26 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF 26 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999985555
No 256
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.72 E-value=0.019 Score=57.11 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
+.-+.|||+|.+++||++++++|+-.. +++-++..+-.- + +++
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~-~v~t~~~~~~~s-----------~------k~k------------------- 50 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKP-LVITEADASSVS-----------G------KGK------------------- 50 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccc-cceeeccccccc-----------c------ccc-------------------
Confidence 556789999999999999999999875 344333222100 0 000
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecC-CCCccchHHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPA-NTDLATSDAL 188 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a-~~d~~~s~~l 188 (775)
....++.+.-.+++.. -..+.|+|+||-- ..+=|..-|.+....+|+.|-++ ..+...-.++
T Consensus 51 --r~tTva~D~g~~~~~~--~~~v~LfgtPGq~-------------RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii 113 (187)
T COG2229 51 --RPTTVAMDFGSIELDE--DTGVHLFGTPGQE-------------RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEII 113 (187)
T ss_pred --cceeEeecccceEEcC--cceEEEecCCCcH-------------HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHH
Confidence 0122333334444433 2357899999942 34557777777777776665433 2333223334
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCC--hhcHHHHHh
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ--PADIEYQIK 226 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~--~~d~~~~l~ 226 (775)
.+.....| .+.+.. ++|-|+-+. .++..+.+.
T Consensus 114 ~f~~~~~~--ip~vVa----~NK~DL~~a~ppe~i~e~l~ 147 (187)
T COG2229 114 DFLTSRNP--IPVVVA----INKQDLFDALPPEKIREALK 147 (187)
T ss_pred HHHhhccC--CCEEEE----eeccccCCCCCHHHHHHHHH
Confidence 44443333 344455 799998764 334445443
No 257
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=96.72 E-value=0.012 Score=64.44 Aligned_cols=81 Identities=23% Similarity=0.301 Sum_probs=51.7
Q ss_pred cceEEEeCCCCCccCCCC-CcccHHHHHHHHHHHHhhc--------------cccEEEEEecCCCCccchHHHHHHHhcC
Q psy3395 131 LNITLIDLPGLTKVPVGD-QPIDIEQQIKDMLFQFITK--------------ETCLILAVTPANTDLATSDALQIAKQVD 195 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~-q~~di~~~i~~lv~~yi~~--------------~~~iILaV~~a~~d~~~s~~l~lar~~D 195 (775)
.+||++|+||+...-... --+-|..-|++.-..|+.+ -+|.+..+-|-...+...|+--| +++.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~M-k~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAM-KRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHH-HHHh
Confidence 479999999997642221 1223455667777777743 24566666676666777775433 4444
Q ss_pred CCCCcceeccCCCCcccCCCCC
Q psy3395 196 PDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 196 P~g~RtigVdLPGlTK~D~~~~ 217 (775)
.. -..|-| |.|.|....
T Consensus 161 ~~-vNlIPV----I~KaD~lT~ 177 (373)
T COG5019 161 KR-VNLIPV----IAKADTLTD 177 (373)
T ss_pred cc-cCeeee----eeccccCCH
Confidence 43 467888 999998853
No 258
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.70 E-value=0.0022 Score=68.94 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHh----cCCC-CCCCCC-----eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 12 PIVNKLQDAFTQ----LGVP-MQMDLP-----QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 12 ~~~~~l~d~l~~----~G~~-~~i~lP-----~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
.-+-+|+..|.. .|-+ ..++++ |+++||-.|+||||||++|+|..
T Consensus 33 aklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~ 87 (365)
T COG1163 33 AKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTK 87 (365)
T ss_pred HHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCC
Confidence 345566666655 2222 234444 69999999999999999999976
No 259
>KOG1547|consensus
Probab=96.70 E-value=0.044 Score=56.67 Aligned_cols=80 Identities=25% Similarity=0.399 Sum_probs=45.6
Q ss_pred cceEEEeCCCCCccCCCCC-cccHHHHHHHHHHHHhhcc--------------ccEEEEEecCCCCccchHHHHHHHhcC
Q psy3395 131 LNITLIDLPGLTKVPVGDQ-PIDIEQQIKDMLFQFITKE--------------TCLILAVTPANTDLATSDALQIAKQVD 195 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q-~~di~~~i~~lv~~yi~~~--------------~~iILaV~~a~~d~~~s~~l~lar~~D 195 (775)
..||++|+||+...=..+. =+-|.+-|++--.+|++.+ +|....+.|..-.+..-|+--|-| +-
T Consensus 104 lkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkr-Lt 182 (336)
T KOG1547|consen 104 LKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKR-LT 182 (336)
T ss_pred EEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHH-Hh
Confidence 4789999999864322211 1335666777777777532 566666666655555544322211 11
Q ss_pred CCCCcceeccCCCCcccCCCC
Q psy3395 196 PDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 196 P~g~RtigVdLPGlTK~D~~~ 216 (775)
..-..+-| |.|.|.+.
T Consensus 183 -~vvNvvPV----IakaDtlT 198 (336)
T KOG1547|consen 183 -EVVNVVPV----IAKADTLT 198 (336)
T ss_pred -hhheeeee----Eeeccccc
Confidence 01244566 99999763
No 260
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.018 Score=64.06 Aligned_cols=151 Identities=16% Similarity=0.212 Sum_probs=76.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEe--ecc--ccc---eeeeccCCccccChHHHHHHHHHHH
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLI--NSM--TEY---AEFLHCKGKKFVDFDEVRREIEAET 106 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~--~~~--~~~---~~~~~~~~~~~~d~~~v~~~i~~~~ 106 (775)
-|+++|.+|+|||+++-.|... +..++ +....+..- +.. ..| +..+..+-....+..++.+.+....
T Consensus 208 ii~lvGptGvGKTTt~akLA~~-l~~~g-----~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQ-LLKQN-----RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHcC-----CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 3689999999999999999854 32332 111112111 110 112 2211111111234445544443221
Q ss_pred hhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhh--ccccEEEEEecCCCCccc
Q psy3395 107 DRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFIT--KETCLILAVTPANTDLAT 184 (775)
Q Consensus 107 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iILaV~~a~~d~~~ 184 (775)
. -.-.++.|||+||.... . ..++.+| ..+.. +++ .++.|.+++. ..
T Consensus 282 ~--------------------~~~~D~VLIDTAGr~~~--d------~~~l~EL-~~l~~~~~p~-~~~LVLsag~--~~ 329 (407)
T PRK12726 282 Y--------------------VNCVDHILIDTVGRNYL--A------EESVSEI-SAYTDVVHPD-LTCFTFSSGM--KS 329 (407)
T ss_pred h--------------------cCCCCEEEEECCCCCcc--C------HHHHHHH-HHHhhccCCc-eEEEECCCcc--cH
Confidence 0 01237899999997541 1 1223332 22332 344 3344555543 34
Q ss_pred hHHHHHHHhcCCCCCcceeccCCCCcccCCCCChhcHHHHHhh
Q psy3395 185 SDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKS 227 (775)
Q Consensus 185 s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~~d~~~~l~~ 227 (775)
+++...++.+..-+.. -.| +||.|-...+-.+..++..
T Consensus 330 ~d~~~i~~~f~~l~i~-glI----~TKLDET~~~G~~Lsv~~~ 367 (407)
T PRK12726 330 ADVMTILPKLAEIPID-GFI----ITKMDETTRIGDLYTVMQE 367 (407)
T ss_pred HHHHHHHHhcCcCCCC-EEE----EEcccCCCCccHHHHHHHH
Confidence 5566666666554333 356 7999988776666555443
No 261
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.0032 Score=70.27 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|++||..|+|||+++-.|.+.
T Consensus 139 ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999875
No 262
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.67 E-value=0.0072 Score=66.31 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|++||.+|+||||++-.|.+.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999986
No 263
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.65 E-value=0.007 Score=65.49 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
-.++++|..++|||||+++|+|...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 4699999999999999999999764
No 264
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=96.63 E-value=0.0059 Score=62.46 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=42.4
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~lar~~DP~g~RtigVdLPG 208 (775)
..|.|.|+||-. ..+.|...|.++.+++|+++-..+.+ +.+ ...+..++++.+ +...++|
T Consensus 44 ~~l~iwDt~G~e-------------~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~~piilv---- 105 (200)
T smart00176 44 IRFNVWDTAGQE-------------KFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPIVLC---- 105 (200)
T ss_pred EEEEEEECCCch-------------hhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCEEEE----
Confidence 468899999952 34567788999999887775433321 111 123343444444 4566777
Q ss_pred CcccCCCC
Q psy3395 209 MTKVPIGD 216 (775)
Q Consensus 209 lTK~D~~~ 216 (775)
.||.|+.+
T Consensus 106 gNK~Dl~~ 113 (200)
T smart00176 106 GNKVDVKD 113 (200)
T ss_pred EECccccc
Confidence 79999853
No 265
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.0051 Score=74.07 Aligned_cols=172 Identities=15% Similarity=0.125 Sum_probs=83.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEE---Eeecc----ccceeeeccCCccccChHHHHHHHHHHH
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQ---LINSM----TEYAEFLHCKGKKFVDFDEVRREIEAET 106 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~---l~~~~----~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 106 (775)
-|++||.+|+||||.+--|.+.- .+...+- ....+. .+-.. ..|++.+..+-....+.+++.+.++..
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~k---kV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~- 261 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARC-VAREGAD---QLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL- 261 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhH-HHHcCCC---eEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-
Confidence 36899999999999999999963 1222110 000010 00000 123333322222223444444444321
Q ss_pred hhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH
Q psy3395 107 DRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD 186 (775)
Q Consensus 107 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~ 186 (775)
. -.+++|||+||..... ..+.+.+..+.. ..++..+ +.|.+|+.. ..+
T Consensus 262 ---~-------------------~~D~VLIDTAGRs~~d-----~~l~eel~~l~~--~~~p~e~-~LVLsAt~~--~~~ 309 (767)
T PRK14723 262 ---G-------------------DKHLVLIDTVGMSQRD-----RNVSEQIAMLCG--VGRPVRR-LLLLNAASH--GDT 309 (767)
T ss_pred ---c-------------------CCCEEEEeCCCCCccC-----HHHHHHHHHHhc--cCCCCeE-EEEECCCCc--HHH
Confidence 0 1278899999975421 112223332222 2234444 455566542 233
Q ss_pred HHHHHHhcCCCC--CcceeccCCCCcccCCCCChhcHHHHHhhcccccccCCCeEEEEEcCCCcccc
Q psy3395 187 ALQIAKQVDPDV--LNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLILAVTPANSDLA 251 (775)
Q Consensus 187 ~l~lar~~DP~g--~RtigVdLPGlTK~D~~~~~~d~~~~l~~~~~~~l~~G~~~~~V~nrsq~d~~ 251 (775)
...+++.+.... .-+=+| +||.|-...+-.+..++...-.| -.|++.--+=.+|+.
T Consensus 310 l~~i~~~f~~~~~~~i~glI----lTKLDEt~~~G~iL~i~~~~~lP-----I~yit~GQ~VPdDL~ 367 (767)
T PRK14723 310 LNEVVHAYRHGAGEDVDGCI----ITKLDEATHLGPALDTVIRHRLP-----VHYVSTGQKVPEHLE 367 (767)
T ss_pred HHHHHHHHhhcccCCCCEEE----EeccCCCCCccHHHHHHHHHCCC-----eEEEecCCCChhhcc
Confidence 334555443210 123367 79999887766666665544334 115544444444554
No 266
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.60 E-value=0.018 Score=65.60 Aligned_cols=87 Identities=20% Similarity=0.117 Sum_probs=47.0
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCc
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMT 210 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlT 210 (775)
.++.|||+||.... .... ...+..++.. ...+... +.|.+++.. ..+..+.++.+..-+. +-.| +|
T Consensus 300 ~DlVlIDt~G~~~~----d~~~-~~~L~~ll~~-~~~~~~~-~LVl~a~~~--~~~l~~~~~~f~~~~~-~~vI----~T 365 (424)
T PRK05703 300 CDVILIDTAGRSQR----DKRL-IEELKALIEF-SGEPIDV-YLVLSATTK--YEDLKDIYKHFSRLPL-DGLI----FT 365 (424)
T ss_pred CCEEEEeCCCCCCC----CHHH-HHHHHHHHhc-cCCCCeE-EEEEECCCC--HHHHHHHHHHhCCCCC-CEEE----Ee
Confidence 48999999998432 1111 1234444441 1133333 445556543 3444555555554443 2366 79
Q ss_pred ccCCCCChhcHHHHHhhcccc
Q psy3395 211 KVPIGDQPADIEYQIKSMILQ 231 (775)
Q Consensus 211 K~D~~~~~~d~~~~l~~~~~~ 231 (775)
|+|-...+..+..++...-.|
T Consensus 366 KlDet~~~G~i~~~~~~~~lP 386 (424)
T PRK05703 366 KLDETSSLGSILSLLIESGLP 386 (424)
T ss_pred cccccccccHHHHHHHHHCCC
Confidence 999877665666665544344
No 267
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.55 E-value=0.0062 Score=69.94 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=40.8
Q ss_pred CCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc---------cchHHHHHHHhcCCCCC
Q psy3395 129 NVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL---------ATSDALQIAKQVDPDVL 199 (775)
Q Consensus 129 ~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~---------~~s~~l~lar~~DP~g~ 199 (775)
+-..++|||+||.. +.+++|+.. +...+..|| |++|.... .+.+.+.+++.+ |.
T Consensus 83 ~~~~i~lIDtPGh~------------~f~~~~~~g-~~~aD~ail-VVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi 145 (446)
T PTZ00141 83 PKYYFTIIDAPGHR------------DFIKNMITG-TSQADVAIL-VVASTAGEFEAGISKDGQTREHALLAFTL---GV 145 (446)
T ss_pred CCeEEEEEECCChH------------HHHHHHHHh-hhhcCEEEE-EEEcCCCceecccCCCccHHHHHHHHHHc---CC
Confidence 34578999999932 245555554 456676666 45555432 344556676664 43
Q ss_pred -cceeccCCCCcccCC
Q psy3395 200 -NLTLVDLPGMTKVPI 214 (775)
Q Consensus 200 -RtigVdLPGlTK~D~ 214 (775)
+.|.+ +||.|.
T Consensus 146 ~~iiv~----vNKmD~ 157 (446)
T PTZ00141 146 KQMIVC----INKMDD 157 (446)
T ss_pred CeEEEE----EEcccc
Confidence 45678 899994
No 268
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.54 E-value=0.02 Score=69.86 Aligned_cols=131 Identities=20% Similarity=0.260 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
.+--|+|||...+|||||+|+|+... |..++. .. .+....|+.+. |.++
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~-------~~----------g~~~~~D~~~~--E~~r------ 67 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEE-------LA----------GEQLALDFDEE--EQAR------ 67 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchh-------hc----------CcceecCccHH--HHHh------
Confidence 45569999999999999999997432 222221 00 01112343322 2211
Q ss_pred CCCCcccccCeEEEEe-cCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HH
Q psy3395 111 GSNKGISNVPINLRVY-SPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DA 187 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~-~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~ 187 (775)
| -.+....+.+... ...-..++|||+||.... ...+...+...++.|| |++|...+..+ ..
T Consensus 68 g--iTi~~~~~~~~~~~~~~~~~i~liDtPG~~df-------------~~~~~~~l~~~D~avl-Vvda~~g~~~~t~~~ 131 (731)
T PRK07560 68 G--ITIKAANVSMVHEYEGKEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIV-VVDAVEGVMPQTETV 131 (731)
T ss_pred h--hhhhccceEEEEEecCCcEEEEEEcCCCccCh-------------HHHHHHHHHhcCEEEE-EEECCCCCCccHHHH
Confidence 1 0111222333321 112346889999997541 1234555666677666 45555544333 34
Q ss_pred HHHHHhcCCCCCcceeccCCCCcccCCC
Q psy3395 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIG 215 (775)
Q Consensus 188 l~lar~~DP~g~RtigVdLPGlTK~D~~ 215 (775)
++.+.+. +...|.+ ++|+|+.
T Consensus 132 ~~~~~~~---~~~~iv~----iNK~D~~ 152 (731)
T PRK07560 132 LRQALRE---RVKPVLF----INKVDRL 152 (731)
T ss_pred HHHHHHc---CCCeEEE----EECchhh
Confidence 5554443 4456888 8999976
No 269
>PTZ00416 elongation factor 2; Provisional
Probab=96.52 E-value=0.0088 Score=73.89 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=40.0
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcc
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTK 211 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK 211 (775)
.++|+|+||... .+.+ +..-+...++.|| |++|...+..+.. .+.+.+.-.+...+.| ++|
T Consensus 93 ~i~liDtPG~~~------------f~~~-~~~al~~~D~ail-Vvda~~g~~~~t~-~~~~~~~~~~~p~iv~----iNK 153 (836)
T PTZ00416 93 LINLIDSPGHVD------------FSSE-VTAALRVTDGALV-VVDCVEGVCVQTE-TVLRQALQERIRPVLF----INK 153 (836)
T ss_pred EEEEEcCCCHHh------------HHHH-HHHHHhcCCeEEE-EEECCCCcCccHH-HHHHHHHHcCCCEEEE----EEC
Confidence 488999999743 2222 2334455666655 5666666655542 3334443345677888 999
Q ss_pred cCCC
Q psy3395 212 VPIG 215 (775)
Q Consensus 212 ~D~~ 215 (775)
+|+.
T Consensus 154 ~D~~ 157 (836)
T PTZ00416 154 VDRA 157 (836)
T ss_pred hhhh
Confidence 9986
No 270
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.50 E-value=0.015 Score=70.89 Aligned_cols=66 Identities=21% Similarity=0.164 Sum_probs=41.6
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc--hHHHHHHHhcCCCCCcceeccCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT--SDALQIAKQVDPDVLNLTLVDLP 207 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~--s~~l~lar~~DP~g~RtigVdLP 207 (775)
-..+.|+|+||.... ...+..++...+++||+| ++...+.. ...++.+.+ .+.+.+.|
T Consensus 85 ~~~i~liDTPG~~~f-------------~~~~~~al~~aD~~llVv-da~~g~~~~t~~~~~~~~~---~~~p~ivv--- 144 (720)
T TIGR00490 85 EYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVV-CAVEGVMPQTETVLRQALK---ENVKPVLF--- 144 (720)
T ss_pred ceEEEEEeCCCcccc-------------HHHHHHHHHhcCEEEEEE-ecCCCCCccHHHHHHHHHH---cCCCEEEE---
Confidence 457899999998541 124567778888777755 45444322 234444433 33455788
Q ss_pred CCcccCCCC
Q psy3395 208 GMTKVPIGD 216 (775)
Q Consensus 208 GlTK~D~~~ 216 (775)
++|+|+..
T Consensus 145 -iNKiD~~~ 152 (720)
T TIGR00490 145 -INKVDRLI 152 (720)
T ss_pred -EEChhccc
Confidence 89999863
No 271
>KOG2655|consensus
Probab=96.49 E-value=0.023 Score=62.67 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=50.8
Q ss_pred cceEEEeCCCCCccCCCC-CcccHHHHHHHHHHHHhhc-------------cccEEEEEecCCCCccchHHHHHHHhcCC
Q psy3395 131 LNITLIDLPGLTKVPVGD-QPIDIEQQIKDMLFQFITK-------------ETCLILAVTPANTDLATSDALQIAKQVDP 196 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~-q~~di~~~i~~lv~~yi~~-------------~~~iILaV~~a~~d~~~s~~l~lar~~DP 196 (775)
.+||+||+||+...-... --.-+..-+...-..|+.. -+|.+..+.|-.-.+..-|+--|- .+..
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk-~l~~ 157 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMK-KLSK 157 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHH-HHhc
Confidence 478999999997642221 1223344566666677643 245566667766667666654433 3332
Q ss_pred CCCcceeccCCCCcccCCCCCh
Q psy3395 197 DVLNLTLVDLPGMTKVPIGDQP 218 (775)
Q Consensus 197 ~g~RtigVdLPGlTK~D~~~~~ 218 (775)
.-.+|.| |.|.|.+...
T Consensus 158 -~vNiIPV----I~KaD~lT~~ 174 (366)
T KOG2655|consen 158 -KVNLIPV----IAKADTLTKD 174 (366)
T ss_pred -cccccce----eeccccCCHH
Confidence 3578888 9999988654
No 272
>PRK00098 GTPase RsgA; Reviewed
Probab=96.48 E-value=0.0081 Score=65.35 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
.++++|..++||||||++|.|..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999965
No 273
>KOG1954|consensus
Probab=96.46 E-value=0.0021 Score=69.77 Aligned_cols=161 Identities=20% Similarity=0.233 Sum_probs=86.6
Q ss_pred CCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCc----ccc-cccEEEEEeeccccceeeeccCCccc-----cChHH
Q psy3395 28 MQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG----IVT-RRPLVLQLINSMTEYAEFLHCKGKKF-----VDFDE 97 (775)
Q Consensus 28 ~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g----~~T-R~p~~l~l~~~~~~~~~~~~~~~~~~-----~d~~~ 97 (775)
+...-|-|.++|.=|.||||.|+-|++-+| | |.- -.| ||- +.|. .+.+- ..+|... ..|..
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dy-p-g~riGpEPTtd~Fi--~vM~-G~~e~----~ipGnal~vd~~~pF~g 124 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDY-P-GLRIGPEPTTDRFI--AVMH-GDEEG----SIPGNALVVDAKKPFRG 124 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCC-C-ccccCCCCCcceeE--EEEe-cCccc----ccCCceeeecCCCchhh
Confidence 345679999999999999999999999996 7 221 112 221 1111 11110 0111110 11222
Q ss_pred HHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEec
Q psy3395 98 VRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTP 177 (775)
Q Consensus 98 v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~ 177 (775)
+..-=..-..+. .+...-.+-+-..|+||+||+-.+.- |-..-..-....+.-|+.+-+-|||.--+
T Consensus 125 L~~FG~aflnRf-----------~csqmp~~vLe~vtiVdtPGILsgeK--QrisR~ydF~~v~~WFaeR~D~IiLlfD~ 191 (532)
T KOG1954|consen 125 LNKFGNAFLNRF-----------MCSQLPNQVLESVTIVDTPGILSGEK--QRISRGYDFTGVLEWFAERVDRIILLFDA 191 (532)
T ss_pred hhhhHHHHHHHH-----------HHhcCChhhhhheeeeccCcccccch--hcccccCChHHHHHHHHHhccEEEEEech
Confidence 111100001111 12223334445789999999965432 21111112345677788888888888777
Q ss_pred CCCCcc--chHHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 178 ANTDLA--TSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 178 a~~d~~--~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+--|++ .+.++.-.|.. ...+-.| ++|.|.++.
T Consensus 192 hKLDIsdEf~~vi~aLkG~---EdkiRVV----LNKADqVdt 226 (532)
T KOG1954|consen 192 HKLDISDEFKRVIDALKGH---EDKIRVV----LNKADQVDT 226 (532)
T ss_pred hhccccHHHHHHHHHhhCC---cceeEEE----eccccccCH
Confidence 776663 34455555542 2355567 888888864
No 274
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.44 E-value=0.0091 Score=60.95 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=43.8
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch-HHHHHHHhcCCCCCcceeccCCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS-DALQIAKQVDPDVLNLTLVDLPGM 209 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s-~~l~lar~~DP~g~RtigVdLPGl 209 (775)
.++.|||+||.... ..+..+.+++++.. + ++. -++.|.+|+.....- .+....+.+.++ -.| +
T Consensus 84 ~D~vlIDT~Gr~~~-----d~~~~~el~~~~~~-~-~~~-~~~LVlsa~~~~~~~~~~~~~~~~~~~~----~lI----l 147 (196)
T PF00448_consen 84 YDLVLIDTAGRSPR-----DEELLEELKKLLEA-L-NPD-EVHLVLSATMGQEDLEQALAFYEAFGID----GLI----L 147 (196)
T ss_dssp SSEEEEEE-SSSST-----HHHHHHHHHHHHHH-H-SSS-EEEEEEEGGGGGHHHHHHHHHHHHSSTC----EEE----E
T ss_pred CCEEEEecCCcchh-----hHHHHHHHHHHhhh-c-CCc-cceEEEecccChHHHHHHHHHhhcccCc----eEE----E
Confidence 47899999997531 11112233332222 2 333 445556666543222 233333333443 366 7
Q ss_pred cccCCCCChhcHHHHHhhcccc
Q psy3395 210 TKVPIGDQPADIEYQIKSMILQ 231 (775)
Q Consensus 210 TK~D~~~~~~d~~~~l~~~~~~ 231 (775)
||.|-....-.+..++...-.|
T Consensus 148 TKlDet~~~G~~l~~~~~~~~P 169 (196)
T PF00448_consen 148 TKLDETARLGALLSLAYESGLP 169 (196)
T ss_dssp ESTTSSSTTHHHHHHHHHHTSE
T ss_pred EeecCCCCcccceeHHHHhCCC
Confidence 9999988776666665544444
No 275
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.021 Score=64.47 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=19.4
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
|+|+|..|+||||++..|...
T Consensus 226 i~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999864
No 276
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.41 E-value=0.0073 Score=60.69 Aligned_cols=129 Identities=20% Similarity=0.359 Sum_probs=67.3
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
-|.|+++|..+|||++|+-.|+.-.+.+ ++|-. .+.. +
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~----T~tS~------e~n~---~----------------------------- 40 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVP----TVTSM------ENNI---A----------------------------- 40 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-------B---S------SEEE---E-----------------------------
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCC----eeccc------cCCc---e-----------------------------
Confidence 4789999999999999999998764321 22221 0000 0
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHH--HhhccccEEEEEecCCCCccchHH--
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQ--FITKETCLILAVTPANTDLATSDA-- 187 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~--yi~~~~~iILaV~~a~~d~~~s~~-- 187 (775)
..+..+....+.|||+||-.+.. ..++.. |+.+..+||..|=++...-.-.++
T Consensus 41 -----------~~~~~~~~~~~~lvD~PGH~rlr------------~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae 97 (181)
T PF09439_consen 41 -----------YNVNNSKGKKLRLVDIPGHPRLR------------SKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAE 97 (181)
T ss_dssp -----------CCGSSTCGTCECEEEETT-HCCC------------HHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHH
T ss_pred -----------EEeecCCCCEEEEEECCCcHHHH------------HHHHHhhhchhhCCEEEEEEeCccchhhHHHHHH
Confidence 00011233467899999976542 123333 788899988877655311111111
Q ss_pred -----HHHHHhcCCCCCcceeccCCCCcccCCCCC--hhcHHHHHhhccc
Q psy3395 188 -----LQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ--PADIEYQIKSMIL 230 (775)
Q Consensus 188 -----l~lar~~DP~g~RtigVdLPGlTK~D~~~~--~~d~~~~l~~~~~ 230 (775)
|.. .+.-+.+.+.+.+ ++|-|+... ...+...|+..+.
T Consensus 98 ~Ly~iL~~-~~~~~~~~piLIa----cNK~Dl~~A~~~~~Ik~~LE~Ei~ 142 (181)
T PF09439_consen 98 YLYDILSD-TEVQKNKPPILIA----CNKQDLFTAKPPKKIKKLLEKEID 142 (181)
T ss_dssp HHHHHHHH-HHCCTT--EEEEE----EE-TTSTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHh-hhhccCCCCEEEE----EeCccccccCCHHHHHHHHHHHHH
Confidence 111 1223667788888 899998752 2334455665543
No 277
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.014 Score=67.49 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|++||..|+|||+++..|.+.
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 278
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.39 E-value=0.01 Score=65.19 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 17 LQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 17 l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+.+.++..|.. ..-=.+.|||-.++||||+||+|+|...
T Consensus 119 ~i~~~~~~~~~--~~~~~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 119 KIKRLKKKGLL--KRKIRVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred HHHHHhhcCCC--ccceEEEEEcCCCCcHHHHHHHHhcccc
Confidence 33444555532 1122389999999999999999999874
No 279
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.39 E-value=0.016 Score=56.42 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
..++++||.+++||||++++|.|..
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~ 125 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRH 125 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568999999999999999998754
No 280
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.38 E-value=0.031 Score=63.81 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=47.4
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcc
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTK 211 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK 211 (775)
++.|||+||.... ..+.-+.++.+ ... ..++.++| |++|... ++++..++.+...-.-+-.| +||
T Consensus 177 DvVIIDTAGr~~~-----d~~lm~El~~l-~~~-~~pdevlL-Vvda~~g---q~av~~a~~F~~~l~i~gvI----lTK 241 (437)
T PRK00771 177 DVIIVDTAGRHAL-----EEDLIEEMKEI-KEA-VKPDEVLL-VIDATIG---QQAKNQAKAFHEAVGIGGII----ITK 241 (437)
T ss_pred CEEEEECCCcccc-----hHHHHHHHHHH-HHH-hcccceeE-EEecccc---HHHHHHHHHHHhcCCCCEEE----Eec
Confidence 8899999997542 12222222222 222 24555544 5556553 67888888876543445567 899
Q ss_pred cCCCCChhcHHHHHh
Q psy3395 212 VPIGDQPADIEYQIK 226 (775)
Q Consensus 212 ~D~~~~~~d~~~~l~ 226 (775)
.|-...+-.+..+..
T Consensus 242 lD~~a~~G~~ls~~~ 256 (437)
T PRK00771 242 LDGTAKGGGALSAVA 256 (437)
T ss_pred ccCCCcccHHHHHHH
Confidence 998776655555443
No 281
>PLN00043 elongation factor 1-alpha; Provisional
Probab=96.37 E-value=0.01 Score=68.25 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=41.7
Q ss_pred CCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--------cchHHHHHHHhcCCCCCc
Q psy3395 129 NVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--------ATSDALQIAKQVDPDVLN 200 (775)
Q Consensus 129 ~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--------~~s~~l~lar~~DP~g~R 200 (775)
.-..++|+|+||-. +.+++| ..++...++.||+|......+ .+.+.+.+++.... ++
T Consensus 83 ~~~~i~liDtPGh~------------df~~~~-~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi--~~ 147 (447)
T PLN00043 83 TKYYCTVIDAPGHR------------DFIKNM-ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGV--KQ 147 (447)
T ss_pred CCEEEEEEECCCHH------------HHHHHH-HhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCC--Cc
Confidence 34578999999941 244554 445677888877555433222 22344555555332 35
Q ss_pred ceeccCCCCcccCCCC
Q psy3395 201 LTLVDLPGMTKVPIGD 216 (775)
Q Consensus 201 tigVdLPGlTK~D~~~ 216 (775)
.|.+ +||+|+.+
T Consensus 148 iIV~----vNKmD~~~ 159 (447)
T PLN00043 148 MICC----CNKMDATT 159 (447)
T ss_pred EEEE----EEcccCCc
Confidence 5777 89999873
No 282
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=96.33 E-value=0.018 Score=66.21 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=40.4
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc--hHHHHHHHhcCCCCCcceeccCCC
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT--SDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~--s~~l~lar~~DP~g~RtigVdLPG 208 (775)
.++|||+||. +..+++|+... ...+.++| |++|+.. ... -+.+.++....- .+.|.|
T Consensus 118 ~i~~IDtPGH------------~~fi~~m~~g~-~~~D~alL-VVda~~g~~~~qT~ehl~i~~~lgi--~~iIVv---- 177 (460)
T PTZ00327 118 HVSFVDCPGH------------DILMATMLNGA-AVMDAALL-LIAANESCPQPQTSEHLAAVEIMKL--KHIIIL---- 177 (460)
T ss_pred eEeeeeCCCH------------HHHHHHHHHHH-hhCCEEEE-EEECCCCccchhhHHHHHHHHHcCC--CcEEEE----
Confidence 5789999993 23566665553 45555555 5556543 333 344555554332 356788
Q ss_pred CcccCCCCC
Q psy3395 209 MTKVPIGDQ 217 (775)
Q Consensus 209 lTK~D~~~~ 217 (775)
+||+|+.+.
T Consensus 178 lNKiDlv~~ 186 (460)
T PTZ00327 178 QNKIDLVKE 186 (460)
T ss_pred EecccccCH
Confidence 999999853
No 283
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.23 E-value=0.037 Score=68.56 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-.+-.|+|||...+|||||+|+|+..
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~ 42 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHh
Confidence 35668999999999999999999854
No 284
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.19 E-value=0.021 Score=56.94 Aligned_cols=97 Identities=14% Similarity=0.188 Sum_probs=51.4
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHh----cCCCCCcceeccC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQ----VDPDVLNLTLVDL 206 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~----~DP~g~RtigVdL 206 (775)
..+++.|++|-.. .+.+...|..+.+.+|.+|=+++.+ .-.++.....+ ..=.+.+.+.+
T Consensus 58 ~~~~~~d~gG~~~-------------~~~~w~~y~~~~~~iIfVvDssd~~-~l~e~~~~L~~ll~~~~~~~~piLIl-- 121 (175)
T PF00025_consen 58 YSLTIWDLGGQES-------------FRPLWKSYFQNADGIIFVVDSSDPE-RLQEAKEELKELLNDPELKDIPILIL-- 121 (175)
T ss_dssp EEEEEEEESSSGG-------------GGGGGGGGHTTESEEEEEEETTGGG-GHHHHHHHHHHHHTSGGGTTSEEEEE--
T ss_pred EEEEEEecccccc-------------ccccceeeccccceeEEEEecccce-eecccccchhhhcchhhcccceEEEE--
Confidence 4678999998432 3446778888888887777655433 12222222221 11124566666
Q ss_pred CCCcccCCCCChhcHHHHHhhcccccccCCCeEEEEEcCC
Q psy3395 207 PGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLILAVTPA 246 (775)
Q Consensus 207 PGlTK~D~~~~~~d~~~~l~~~~~~~l~~G~~~~~V~nrs 246 (775)
++|.|+.+.- +..++..-.....++.+..|.++.+.+
T Consensus 122 --~NK~D~~~~~-~~~~i~~~l~l~~l~~~~~~~v~~~sa 158 (175)
T PF00025_consen 122 --ANKQDLPDAM-SEEEIKEYLGLEKLKNKRPWSVFSCSA 158 (175)
T ss_dssp --EESTTSTTSS-THHHHHHHTTGGGTTSSSCEEEEEEBT
T ss_pred --eccccccCcc-hhhHHHhhhhhhhcccCCceEEEeeec
Confidence 7999986532 222222222222244233376665543
No 285
>PRK10867 signal recognition particle protein; Provisional
Probab=96.18 E-value=0.045 Score=62.46 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=49.3
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGM 209 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGl 209 (775)
-.++.|||+||.... .......+.. +...+ +|..+ +.|++|. ..+++...|+.+.....-+-.| +
T Consensus 183 ~~DvVIIDTaGrl~~-----d~~lm~eL~~-i~~~v-~p~ev-llVlda~---~gq~av~~a~~F~~~~~i~giI----l 247 (433)
T PRK10867 183 GYDVVIVDTAGRLHI-----DEELMDELKA-IKAAV-NPDEI-LLVVDAM---TGQDAVNTAKAFNEALGLTGVI----L 247 (433)
T ss_pred CCCEEEEeCCCCccc-----CHHHHHHHHH-HHHhh-CCCeE-EEEEecc---cHHHHHHHHHHHHhhCCCCEEE----E
Confidence 357899999997542 1112222222 22333 45555 4555554 3578888888776444455567 8
Q ss_pred cccCCCCChhcHHHHHhhcccc
Q psy3395 210 TKVPIGDQPADIEYQIKSMILQ 231 (775)
Q Consensus 210 TK~D~~~~~~d~~~~l~~~~~~ 231 (775)
||.|-...+-.+..+..-.-.|
T Consensus 248 TKlD~~~rgG~alsi~~~~~~P 269 (433)
T PRK10867 248 TKLDGDARGGAALSIRAVTGKP 269 (433)
T ss_pred eCccCcccccHHHHHHHHHCcC
Confidence 9999765554455544333344
No 286
>KOG0094|consensus
Probab=96.17 E-value=0.025 Score=56.82 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=42.0
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCC--CCccchHHHHHHHhc-CCCCCcceeccC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPAN--TDLATSDALQIAKQV-DPDVLNLTLVDL 206 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~--~d~~~s~~l~lar~~-DP~g~RtigVdL 206 (775)
...|.|=|+-| | +..|.|+-.|+++...+|.+--=.+ +=..+...+.-++.. ++++-....|
T Consensus 70 ~vrLQlWDTAG--------Q-----ERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LV-- 134 (221)
T KOG0094|consen 70 TVRLQLWDTAG--------Q-----ERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLV-- 134 (221)
T ss_pred EEEEEEEeccc--------H-----HHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEE--
Confidence 34577888777 2 5789999999999876654322111 112333344444433 3333444455
Q ss_pred CCCcccCCCCC
Q psy3395 207 PGMTKVPIGDQ 217 (775)
Q Consensus 207 PGlTK~D~~~~ 217 (775)
=+|.||.+.
T Consensus 135 --GnKtDL~dk 143 (221)
T KOG0094|consen 135 --GNKTDLSDK 143 (221)
T ss_pred --cccccccch
Confidence 489998875
No 287
>PLN00023 GTP-binding protein; Provisional
Probab=96.14 E-value=0.025 Score=61.93 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=24.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
...-.|||||+.++||||++..+++-.|
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F 46 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSS 46 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCc
Confidence 4456799999999999999999998776
No 288
>KOG1489|consensus
Probab=95.94 E-value=0.02 Score=61.54 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
++.|-.||=.+|||||||+||+...
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK 220 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK 220 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC
Confidence 3556789999999999999999765
No 289
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.91 E-value=0.022 Score=61.14 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.|+++|.+|+||||++-.|...
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999853
No 290
>KOG0410|consensus
Probab=95.89 E-value=0.065 Score=57.80 Aligned_cols=44 Identities=30% Similarity=0.413 Sum_probs=36.3
Q ss_pred HhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 22 TQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 22 ~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.+.|. ...+.|.|.|||=.+|||||||++|++....|++.=..|
T Consensus 169 ~r~gr-~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFAT 212 (410)
T KOG0410|consen 169 RRVGR-EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFAT 212 (410)
T ss_pred hhhcc-ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhhee
Confidence 34555 358999999999999999999999999998887764444
No 291
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=95.82 E-value=0.038 Score=56.23 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=39.4
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--HHHHHHHhcCCCCCcceeccCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--DALQIAKQVDPDVLNLTLVDLP 207 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~~l~lar~~DP~g~RtigVdLP 207 (775)
..|.|.|++|... .+-..|+.+.+.+||+....+.+ +.+. ..+..++...| ....+.|
T Consensus 66 v~l~iwDTaG~~~---------------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilv--- 126 (195)
T cd01873 66 VSLRLWDTFGDHD---------------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILV--- 126 (195)
T ss_pred EEEEEEeCCCChh---------------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEE---
Confidence 4678999999532 12234778888877766543322 2221 13444454444 3467788
Q ss_pred CCcccCCCC
Q psy3395 208 GMTKVPIGD 216 (775)
Q Consensus 208 GlTK~D~~~ 216 (775)
.||.|+.+
T Consensus 127 -gNK~DL~~ 134 (195)
T cd01873 127 -GCKLDLRY 134 (195)
T ss_pred -EEchhccc
Confidence 79999865
No 292
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.2 Score=56.42 Aligned_cols=85 Identities=20% Similarity=0.249 Sum_probs=46.4
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhc--cccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITK--ETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~--~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPG 208 (775)
.++.|||+||.... +.. .+.+| .+++.. +..-++.|.+|+.. ..++...++++.+-+. +-.|
T Consensus 255 ~DlVLIDTaGr~~~-------~~~-~l~el-~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~~~-~~~I---- 318 (388)
T PRK12723 255 FDLVLVDTIGKSPK-------DFM-KLAEM-KELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPFSY-KTVI---- 318 (388)
T ss_pred CCEEEEcCCCCCcc-------CHH-HHHHH-HHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCCCC-CEEE----
Confidence 47899999997531 221 22222 233322 23234556667664 3344455555544332 2356
Q ss_pred CcccCCCCChhcHHHHHhhcccc
Q psy3395 209 MTKVPIGDQPADIEYQIKSMILQ 231 (775)
Q Consensus 209 lTK~D~~~~~~d~~~~l~~~~~~ 231 (775)
+||.|-...+-.+..++...-.|
T Consensus 319 ~TKlDet~~~G~~l~~~~~~~~P 341 (388)
T PRK12723 319 FTKLDETTCVGNLISLIYEMRKE 341 (388)
T ss_pred EEeccCCCcchHHHHHHHHHCCC
Confidence 79999887776666665544334
No 293
>PRK12740 elongation factor G; Reviewed
Probab=95.74 E-value=0.044 Score=66.35 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=42.3
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--HHHHHHhcCCCCCcceeccCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--ALQIAKQVDPDVLNLTLVDLP 207 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~l~lar~~DP~g~RtigVdLP 207 (775)
-..++|||+||... ....+..++...+.+|+.|- +..+...+. .+..++. .+.+.+.|
T Consensus 59 ~~~i~liDtPG~~~-------------~~~~~~~~l~~aD~vllvvd-~~~~~~~~~~~~~~~~~~---~~~p~iiv--- 118 (668)
T PRK12740 59 GHKINLIDTPGHVD-------------FTGEVERALRVLDGAVVVVC-AVGGVEPQTETVWRQAEK---YGVPRIIF--- 118 (668)
T ss_pred CEEEEEEECCCcHH-------------HHHHHHHHHHHhCeEEEEEe-CCCCcCHHHHHHHHHHHH---cCCCEEEE---
Confidence 35799999999632 12345667777777666554 444443222 3344443 46778889
Q ss_pred CCcccCCCCC
Q psy3395 208 GMTKVPIGDQ 217 (775)
Q Consensus 208 GlTK~D~~~~ 217 (775)
+||+|+...
T Consensus 119 -~NK~D~~~~ 127 (668)
T PRK12740 119 -VNKMDRAGA 127 (668)
T ss_pred -EECCCCCCC
Confidence 999998753
No 294
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.66 E-value=0.047 Score=62.25 Aligned_cols=86 Identities=15% Similarity=0.177 Sum_probs=49.0
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCc
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMT 210 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlT 210 (775)
.++.|||+||.... .......+..+. . +-++..++| |++|. ..+++...|+.+.....-+-.| +|
T Consensus 183 ~DvVIIDTaGr~~~-----d~~l~~eL~~i~-~-~~~p~e~lL-Vvda~---tgq~~~~~a~~f~~~v~i~giI----lT 247 (428)
T TIGR00959 183 FDVVIVDTAGRLQI-----DEELMEELAAIK-E-ILNPDEILL-VVDAM---TGQDAVNTAKTFNERLGLTGVV----LT 247 (428)
T ss_pred CCEEEEeCCCcccc-----CHHHHHHHHHHH-H-hhCCceEEE-EEecc---chHHHHHHHHHHHhhCCCCEEE----Ee
Confidence 47899999997542 122222233222 2 334665555 44554 3478888888776443445566 79
Q ss_pred ccCCCCChhcHHHHHhhcccc
Q psy3395 211 KVPIGDQPADIEYQIKSMILQ 231 (775)
Q Consensus 211 K~D~~~~~~d~~~~l~~~~~~ 231 (775)
|+|-...+-.+..+....-.|
T Consensus 248 KlD~~~~~G~~lsi~~~~~~P 268 (428)
T TIGR00959 248 KLDGDARGGAALSVRSVTGKP 268 (428)
T ss_pred CccCcccccHHHHHHHHHCcC
Confidence 999765554455544433344
No 295
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.64 E-value=0.023 Score=61.21 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
..|++|..++|||||||+|.+-
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 4789999999999999999873
No 296
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.62 E-value=0.048 Score=53.06 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.3
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
|.++|..++||||++..|...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999865
No 297
>PRK13768 GTPase; Provisional
Probab=95.60 E-value=0.056 Score=57.40 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=40.9
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH-----HHHHHHhcCCCCCcceeccC
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD-----ALQIAKQVDPDVLNLTLVDL 206 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~-----~l~lar~~DP~g~RtigVdL 206 (775)
+..++|+||....-.. ....+.++..+......+|+.|+++..-....+ .+.+..+.. .+...+.|
T Consensus 98 ~~~~~d~~g~~~~~~~------~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v-- 168 (253)
T PRK13768 98 DYVLVDTPGQMELFAF------RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPV-- 168 (253)
T ss_pred CEEEEeCCcHHHHHhh------hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEE--
Confidence 7889999997553110 112222332222222567777887743222222 222222222 35788899
Q ss_pred CCCcccCCCCCh
Q psy3395 207 PGMTKVPIGDQP 218 (775)
Q Consensus 207 PGlTK~D~~~~~ 218 (775)
+||.|+.++.
T Consensus 169 --~nK~D~~~~~ 178 (253)
T PRK13768 169 --LNKADLLSEE 178 (253)
T ss_pred --EEhHhhcCch
Confidence 9999998653
No 298
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=95.46 E-value=0.028 Score=57.34 Aligned_cols=66 Identities=17% Similarity=0.078 Sum_probs=37.9
Q ss_pred CCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhc--cccEEEEEecCCCCccchHHHHHHHhcCCCCCc
Q psy3395 129 NVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITK--ETCLILAVTPANTDLATSDALQIAKQVDPDVLN 200 (775)
Q Consensus 129 ~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~--~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~R 200 (775)
.-|++.|.|=| ..+....-...+.+++.++... ..+.|+.++..-.++...|-..+.|..||.|+|
T Consensus 130 ~~p~illlDEP------~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~~~~~~ 197 (198)
T cd03276 130 MESPFRCLDEF------DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKDPRGPR 197 (198)
T ss_pred cCCCEEEecCc------ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecCCCCCC
Confidence 35677898855 2232333344566677777654 234555555444445555555556667787766
No 299
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=95.36 E-value=0.13 Score=52.72 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=20.6
Q ss_pred CCCCeEEEEcCCCCchHHHHH-HhhCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLE-NFVGR 55 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLe-al~G~ 55 (775)
...-.|+++|+.+|||||+++ .+.|.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~ 33 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGE 33 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCC
Confidence 344579999999999999996 45553
No 300
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.21 E-value=0.067 Score=52.98 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=42.6
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCc
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMT 210 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlT 210 (775)
.++.++|+||.... ..+....++.+. .. ..+..++| |+++.+ ..+++..++++-....-+-.| +|
T Consensus 83 ~d~viiDt~g~~~~-----~~~~l~~l~~l~-~~-~~~~~~~l-Vv~~~~---~~~~~~~~~~~~~~~~~~~vi----lt 147 (173)
T cd03115 83 FDVVIVDTAGRLQI-----DENLMEELKKIK-RV-VKPDEVLL-VVDAMT---GQDAVNQAKAFNEALGITGVI----LT 147 (173)
T ss_pred CCEEEEECcccchh-----hHHHHHHHHHHH-hh-cCCCeEEE-EEECCC---ChHHHHHHHHHHhhCCCCEEE----EE
Confidence 46789999997532 112222333322 12 23555555 454543 234445555442222245567 79
Q ss_pred ccCCCCChhcHHHHHh
Q psy3395 211 KVPIGDQPADIEYQIK 226 (775)
Q Consensus 211 K~D~~~~~~d~~~~l~ 226 (775)
|+|....+..+..+..
T Consensus 148 k~D~~~~~g~~~~~~~ 163 (173)
T cd03115 148 KLDGDARGGAALSIRA 163 (173)
T ss_pred CCcCCCCcchhhhhHH
Confidence 9999887665555433
No 301
>KOG1490|consensus
Probab=95.12 E-value=0.078 Score=60.13 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=50.5
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCC--CccchHHHHHHHhcCCC--CCcceecc
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANT--DLATSDALQIAKQVDPD--VLNLTLVD 205 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~--d~~~s~~l~lar~~DP~--g~RtigVd 205 (775)
..-+.++|+|||-..|..+ .-.|+-..-.-+.+=++.+|.++.-.. ..+-.+-+++...+-|. ...+|.|
T Consensus 214 YlrwQViDTPGILD~plEd-----rN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~Ilv- 287 (620)
T KOG1490|consen 214 YLRWQVIDTPGILDRPEED-----RNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILV- 287 (620)
T ss_pred eeeeeecCCccccCcchhh-----hhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEE-
Confidence 3456799999998765533 222333334556666677787775443 33344446666677674 4578999
Q ss_pred CCCCcccCCCCC
Q psy3395 206 LPGMTKVPIGDQ 217 (775)
Q Consensus 206 LPGlTK~D~~~~ 217 (775)
++|+|++..
T Consensus 288 ---lNK~D~m~~ 296 (620)
T KOG1490|consen 288 ---LNKIDAMRP 296 (620)
T ss_pred ---eecccccCc
Confidence 999999964
No 302
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.06 E-value=0.13 Score=57.42 Aligned_cols=70 Identities=19% Similarity=0.377 Sum_probs=45.3
Q ss_pred CCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC------ccch--HHHHHHHhcCCCCCc
Q psy3395 129 NVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD------LATS--DALQIAKQVDPDVLN 200 (775)
Q Consensus 129 ~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d------~~~s--~~l~lar~~DP~g~R 200 (775)
+-+.+|++|.|| .+ ..+.+|+... ++.++-||+|.+.+.. ...| +-+-+++-.. -..
T Consensus 83 ~k~~~tIiDaPG-Hr-----------dFvknmItGa-sqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~ 147 (428)
T COG5256 83 DKYNFTIIDAPG-HR-----------DFVKNMITGA-SQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQ 147 (428)
T ss_pred CCceEEEeeCCc-hH-----------HHHHHhhcch-hhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--Cce
Confidence 345899999999 32 3677888775 4566777766554443 3333 3455666544 245
Q ss_pred ceeccCCCCcccCCCCC
Q psy3395 201 LTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 201 tigVdLPGlTK~D~~~~ 217 (775)
.|.. ++|.|.++=
T Consensus 148 lIVa----vNKMD~v~w 160 (428)
T COG5256 148 LIVA----VNKMDLVSW 160 (428)
T ss_pred EEEE----EEccccccc
Confidence 6666 899999873
No 303
>KOG1532|consensus
Probab=94.99 E-value=0.035 Score=58.51 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEee
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLIN 76 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~ 76 (775)
-..+.|+|||--+|||++++..|.+.-+ -.. | .|-+|.|-+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~-~~~----~-ppYviNLDP 57 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLH-AKK----T-PPYVINLDP 57 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHh-hcc----C-CCeEEeCCH
Confidence 3456799999999999999999988532 111 1 277777754
No 304
>KOG0093|consensus
Probab=94.85 E-value=0.41 Score=46.07 Aligned_cols=117 Identities=20% Similarity=0.306 Sum_probs=74.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|.|+|+.|+||+|+|-.-.|-.|-| .|....|-.|. -
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~-----------------------afvsTvGidFK-------------------v 60 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTS-----------------------AFVSTVGIDFK-------------------V 60 (193)
T ss_pred eEEEEccCCccchhhhHHhhcccccc-----------------------ceeeeeeeeEE-------------------E
Confidence 69999999999999999999998843 11111111110 0
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHHHHHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDALQIA 191 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~l~la 191 (775)
|.+= .+-.-..|.+-|+-|. +..+.+...|++....+||+--..|.+- +-++..-.+
T Consensus 61 KTvy--------r~~kRiklQiwDTagq-------------EryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqI 119 (193)
T KOG0093|consen 61 KTVY--------RSDKRIKLQIWDTAGQ-------------ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQI 119 (193)
T ss_pred eEee--------ecccEEEEEEEecccc-------------hhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHh
Confidence 0000 0011135667787773 2357789999999999999876555432 223445555
Q ss_pred HhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+.+.-+....|.| -||+|+-++
T Consensus 120 ktysw~naqvilv----gnKCDmd~e 141 (193)
T KOG0093|consen 120 KTYSWDNAQVILV----GNKCDMDSE 141 (193)
T ss_pred eeeeccCceEEEE----ecccCCccc
Confidence 5555556678888 899998754
No 305
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=94.82 E-value=0.21 Score=55.81 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=28.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccE
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPL 70 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~ 70 (775)
.+-+||-.++|||||+++|++...-|.+. ..||--|.
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~ 41 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPN 41 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCc
Confidence 47899999999999999999986313322 46777663
No 306
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.70 E-value=0.27 Score=56.92 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=52.3
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcc
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTK 211 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK 211 (775)
+..+||++|..... ..+.++. .++.... .+.. .+.|.+|.... .++.+.++.+...+ .+-+| +||
T Consensus 336 d~VLIDTaGr~~~d-----~~~~e~~-~~l~~~~-~p~e-~~LVLdAt~~~--~~l~~i~~~f~~~~-~~g~I----lTK 400 (484)
T PRK06995 336 HIVLIDTIGMSQRD-----RMVSEQI-AMLHGAG-APVK-RLLLLNATSHG--DTLNEVVQAYRGPG-LAGCI----LTK 400 (484)
T ss_pred CeEEeCCCCcChhh-----HHHHHHH-HHHhccC-CCCe-eEEEEeCCCcH--HHHHHHHHHhccCC-CCEEE----EeC
Confidence 68899999975310 1111111 1222221 1333 34455665433 34455666666544 45577 899
Q ss_pred cCCCCChhcHHHHHhhcccccccCCCeEEEEEcCCCcccc
Q psy3395 212 VPIGDQPADIEYQIKSMILQFIKRDNCLILAVTPANSDLA 251 (775)
Q Consensus 212 ~D~~~~~~d~~~~l~~~~~~~l~~G~~~~~V~nrsq~d~~ 251 (775)
+|-...+-.+..++...-.| . .|++.--+=.+|+.
T Consensus 401 lDet~~~G~~l~i~~~~~lP---I--~yvt~GQ~VPeDL~ 435 (484)
T PRK06995 401 LDEAASLGGALDVVIRYKLP---L--HYVSNGQRVPEDLH 435 (484)
T ss_pred CCCcccchHHHHHHHHHCCC---e--EEEecCCCChhhhc
Confidence 99877766666665544334 1 25555444444543
No 307
>KOG2203|consensus
Probab=94.63 E-value=0.039 Score=62.84 Aligned_cols=29 Identities=38% Similarity=0.716 Sum_probs=26.4
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 29 QMDLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 29 ~i~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.++---|+|.|+||||||+|||.|.|..|
T Consensus 34 Gl~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 34 GLSYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred CcceeEEEEecCcccchHHHHHHHhccCh
Confidence 46677799999999999999999999987
No 308
>KOG0446|consensus
Probab=94.60 E-value=0.013 Score=69.92 Aligned_cols=266 Identities=18% Similarity=0.213 Sum_probs=147.5
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChH-HHHHHHHHHHh
Q psy3395 29 QMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFD-EVRREIEAETD 107 (775)
Q Consensus 29 ~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~-~v~~~i~~~~~ 107 (775)
....+-|.+++.++.|++++|+.|++.+++|.|+...++. .=...+..-.|- +....+....++. .+...+.++..
T Consensus 183 ~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L--~g~~~~l~~g~v-~vvnR~q~di~~~k~~~~al~~e~~ 259 (657)
T KOG0446|consen 183 IATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRL--VGRPITLKVGYV-GVVNRSQSIIDFKKSILEALNDEVP 259 (657)
T ss_pred hhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeee--cCCcccccccee-eeeccchhhhhhhhhHHHHHHhhhh
Confidence 3567779999999999999999999999999999887771 000001101121 1111222222222 22222222211
Q ss_pred hhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH
Q psy3395 108 RITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA 187 (775)
Q Consensus 108 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~ 187 (775)
..... ...+..+.. .++|.|... |+++......++..++...++.++..|....+.+-- ++.+.+++.+
T Consensus 260 ~f~~~----p~y~~~~~~--~g~p~La~~-L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~~~g~----~~~~~~~~~~ 328 (657)
T KOG0446|consen 260 SFESV----PSYPILLTI--SGVPYLALL-LPGYLQSHIRDQLPELKTKINKLLEKYQDELNRIGA----VDVDLANSAA 328 (657)
T ss_pred hhhcc----ccccccccc--cCcchHHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcc----cCCccchhhH
Confidence 11100 001112222 455666555 788776667788889999999999999988876522 6778888887
Q ss_pred HHHHHhcCCCCCcceeccCCCCcccCCCCChhcHHHHHhhcccccccCCCeEEEEEcCCCcccccc-hHHHHhhhcCCCC
Q psy3395 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLILAVTPANSDLANS-DALKLAKEVDPPG 266 (775)
Q Consensus 188 l~lar~~DP~g~RtigVdLPGlTK~D~~~~~~d~~~~l~~~~~~~l~~G~~~~~V~nrsq~d~~~~-~~~~~~~E~~fF~ 266 (775)
+......++.+-++ +| .++.|.++ +.+. .......++ +..+ |..+.++-+.+..-. ..+ +..-.-+.
T Consensus 329 ll~~i~~~~~~~~~-~v----~g~~~~~~-~~el-sggari~~~-F~~~--f~~~i~~i~~~~~~~~~~i--~~~i~~~~ 396 (657)
T KOG0446|consen 329 LLAIIREDPRGLRT-GV----IGKLDLVP-TKAL-SGGARINYP-FHGG--FPGVIKKLPPDRKLLGQNI--EKLVSEAS 396 (657)
T ss_pred HHHHHHHHHHHHHH-hh----cccccccc-hhcc-cchhhhhhh-hhhc--cchhhhcCCcchhhhHHHH--HHHHHhcc
Confidence 77666677777888 88 78888875 3221 111111233 5556 777777655541111 111 11111121
Q ss_pred CCCCCcccccccChHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH--HHHHhc
Q psy3395 267 LHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQKQLLTLEK--DVEQFK 321 (775)
Q Consensus 267 ~~p~~~~~~~r~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~--eL~~lg 321 (775)
. +...-+....+-..|.+..-+.|.+.-.+++-.+-.++...++.+-. ++.+|+
T Consensus 397 G-~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~~l~rfp 452 (657)
T KOG0446|consen 397 G-IRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRATELKRFP 452 (657)
T ss_pred C-CCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhH
Confidence 1 11122223334455555555555555556666666666666666655 455553
No 309
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.38 E-value=0.03 Score=57.30 Aligned_cols=32 Identities=31% Similarity=0.631 Sum_probs=26.0
Q ss_pred CCCCe---EEEEcCCCCchHHHHHHhhCCCCccccCc
Q psy3395 30 MDLPQ---IAVVGGQSAGKSSVLENFVGRDFLPRGSG 63 (775)
Q Consensus 30 i~lP~---IvVvG~qSsGKSSvLeal~G~~flPr~~g 63 (775)
+++|+ ++|+|+.+||||+++++|+|.- +-++|
T Consensus 27 L~I~~g~FvtViGsNGAGKSTlln~iaG~l--~~t~G 61 (263)
T COG1101 27 LEIAEGDFVTVIGSNGAGKSTLLNAIAGDL--KPTSG 61 (263)
T ss_pred eeecCCceEEEEcCCCccHHHHHHHhhCcc--ccCCc
Confidence 55565 8999999999999999999973 44444
No 310
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.32 E-value=0.035 Score=57.71 Aligned_cols=30 Identities=43% Similarity=0.613 Sum_probs=25.9
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+||||+||+.|.|.+- | ++|.++
T Consensus 34 vaI~GpSGSGKSTLLniig~ld~-p-t~G~v~ 63 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLDK-P-TSGEVL 63 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcccC-C-CCceEE
Confidence 89999999999999999999985 8 666533
No 311
>KOG0458|consensus
Probab=94.21 E-value=0.059 Score=62.12 Aligned_cols=101 Identities=19% Similarity=0.264 Sum_probs=59.4
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--------cch
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--------ATS 185 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--------~~s 185 (775)
.||+-++-...+. ++-..+||+|.||... .+.+|+..--+ .+.-||+|.+....+ .+-
T Consensus 239 rGvTm~v~~~~fe-s~~~~~tliDaPGhkd------------Fi~nmi~g~sq-aD~avLvvd~s~~~FE~gfd~~gQtr 304 (603)
T KOG0458|consen 239 RGVTMDVKTTWFE-SKSKIVTLIDAPGHKD------------FIPNMISGASQ-ADVAVLVVDASTGEFESGFDPGGQTR 304 (603)
T ss_pred cceeEEeeeEEEe-cCceeEEEecCCCccc------------cchhhhccccc-cceEEEEEECCcchhhhccCCCCchH
Confidence 3455543333343 6677899999999421 34456655433 445556555433222 122
Q ss_pred HHHHHHHhcCCCCCcceeccCCCCcccCCCCChhcHHHHHhhccccccc
Q psy3395 186 DALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIK 234 (775)
Q Consensus 186 ~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~~d~~~~l~~~~~~~l~ 234 (775)
+...++|.+. -...|.. ++|.|+++=..+.-+.+.+.+.+||+
T Consensus 305 Eha~llr~Lg--i~qliva----iNKmD~V~Wsq~RF~eIk~~l~~fL~ 347 (603)
T KOG0458|consen 305 EHALLLRSLG--ISQLIVA----INKMDLVSWSQDRFEEIKNKLSSFLK 347 (603)
T ss_pred HHHHHHHHcC--cceEEEE----eecccccCccHHHHHHHHHHHHHHHH
Confidence 3455555544 2345555 79999998666766777888777773
No 312
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.17 E-value=0.03 Score=52.88 Aligned_cols=30 Identities=37% Similarity=0.633 Sum_probs=24.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++|+|..+||||+||++|+|.. +..+|.+
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~--~~~~G~i 42 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL--PPDSGSI 42 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS--HESEEEE
T ss_pred EEEEEccCCCccccceeeecccc--ccccccc
Confidence 37999999999999999999974 4455544
No 313
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=94.07 E-value=0.33 Score=52.98 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~ 56 (775)
|-.||=.|+||||||.+++...
T Consensus 162 VGLVG~PNaGKSTlls~vS~Ak 183 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAK 183 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcC
Confidence 4578999999999999999865
No 314
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.88 E-value=0.056 Score=44.64 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-.++.|..+|||||+|+||.=
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999873
No 315
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.63 E-value=0.056 Score=53.55 Aligned_cols=31 Identities=35% Similarity=0.661 Sum_probs=27.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
-+.+||..+||||+||.+|+|+ ++-++|.+|
T Consensus 34 VLgiVGESGSGKtTLL~~is~r--l~p~~G~v~ 64 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR--LTPDAGTVT 64 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc--cCCCCCeEE
Confidence 4789999999999999999997 577778765
No 316
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.62 E-value=0.37 Score=52.50 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.-+.|+|+|.++|||||+++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4566899999999999999999874
No 317
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=93.59 E-value=0.34 Score=62.31 Aligned_cols=33 Identities=36% Similarity=0.625 Sum_probs=28.7
Q ss_pred CCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccC
Q psy3395 28 MQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS 62 (775)
Q Consensus 28 ~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~ 62 (775)
....||=.+|||..+|||||+|..- |..| |-..
T Consensus 107 ~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~~ 139 (1169)
T TIGR03348 107 YLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLAE 139 (1169)
T ss_pred hhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCch
Confidence 3579999999999999999999995 9886 7654
No 318
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.58 E-value=0.28 Score=49.95 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=25.9
Q ss_pred CCCCC--eEEEEcCCCCchHHHHHHhh--------CCCCccccC
Q psy3395 29 QMDLP--QIAVVGGQSAGKSSVLENFV--------GRDFLPRGS 62 (775)
Q Consensus 29 ~i~lP--~IvVvG~qSsGKSSvLeal~--------G~~flPr~~ 62 (775)
.++-. .++++|.+++|||++|..|. |.. +|.+.
T Consensus 23 ~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~-vp~~~ 65 (200)
T cd03280 23 QLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLP-IPAAE 65 (200)
T ss_pred EECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCC-ccccc
Confidence 34454 39999999999999999998 764 47554
No 319
>KOG0092|consensus
Probab=93.41 E-value=0.15 Score=51.33 Aligned_cols=24 Identities=33% Similarity=0.666 Sum_probs=22.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.||++|+.|+||||++...+--+|
T Consensus 7 KvvLLG~~~VGKSSlV~Rfvk~~F 30 (200)
T KOG0092|consen 7 KVVLLGDSGVGKSSLVLRFVKDQF 30 (200)
T ss_pred EEEEECCCCCCchhhhhhhhhCcc
Confidence 489999999999999999998887
No 320
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.39 E-value=0.065 Score=53.95 Aligned_cols=30 Identities=37% Similarity=0.494 Sum_probs=24.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||.+|+|.. +..+|.+
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i 49 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL--RPQSGAV 49 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCceeE
Confidence 38999999999999999999973 5556643
No 321
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.38 E-value=0.061 Score=54.21 Aligned_cols=30 Identities=30% Similarity=0.648 Sum_probs=25.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+|||||++++|+|. +|.+.+++|
T Consensus 28 i~I~G~tGSGKTTll~aL~~~--i~~~~~~i~ 57 (186)
T cd01130 28 ILISGGTGSGKTTLLNALLAF--IPPDERIIT 57 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhh--cCCCCCEEE
Confidence 899999999999999999995 465555543
No 322
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.37 E-value=0.063 Score=55.20 Aligned_cols=30 Identities=37% Similarity=0.437 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||.+|+|. +|-.+|.+
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i 61 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL--DRPTSGEV 61 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC--cCCCceeE
Confidence 3799999999999999999997 45556644
No 323
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.36 E-value=0.063 Score=55.97 Aligned_cols=30 Identities=40% Similarity=0.595 Sum_probs=24.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||++|+|. +|-.+|.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~i 57 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL--LRPDSGEV 57 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCceEE
Confidence 3899999999999999999997 35556644
No 324
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.34 E-value=0.068 Score=54.69 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=24.6
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||..|+|. +|..+|.+
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i 58 (211)
T cd03225 30 VLIVGPNGSGKSTLLRLLNGL--LGPTSGEV 58 (211)
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCCceE
Confidence 789999999999999999996 35566654
No 325
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.33 E-value=0.068 Score=51.58 Aligned_cols=30 Identities=47% Similarity=0.709 Sum_probs=24.7
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+||||+|+++|+|. +|-.+|.++
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~ 58 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAGE--LEPDEGIVT 58 (144)
T ss_pred EEEECCCCCCHHHHHHHHcCC--CCCCceEEE
Confidence 579999999999999999997 355666543
No 326
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.25 E-value=0.071 Score=53.34 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=24.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSG 63 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g 63 (775)
+++|+|..+||||+|||-|.|+.. |.+..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~-P~~G~ 55 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET-PASGE 55 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC-CCCce
Confidence 378999999999999999999874 76543
No 327
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.18 E-value=0.072 Score=54.52 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=25.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||++|.|. +|..+|.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i 56 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL--TPPSSGTI 56 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC--CCCCccEE
Confidence 6899999999999999999996 46566643
No 328
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.16 E-value=0.078 Score=55.08 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=24.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||+.|+|.. |-.+|.+
T Consensus 29 ~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i 57 (232)
T cd03218 29 VGLLGPNGAGKTTTFYMIVGLV--KPDSGKI 57 (232)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 7899999999999999999973 5556643
No 329
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.09 E-value=0.076 Score=54.70 Aligned_cols=30 Identities=33% Similarity=0.616 Sum_probs=24.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||+.|.|.. |-.+|.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i 57 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL--PPRSGSI 57 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCceE
Confidence 37899999999999999999974 5455643
No 330
>KOG1145|consensus
Probab=93.07 E-value=0.72 Score=53.18 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=48.7
Q ss_pred EecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHHHhcCCCCCcce
Q psy3395 125 VYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIAKQVDPDVLNLT 202 (775)
Q Consensus 125 i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~lar~~DP~g~Rti 202 (775)
+.-|..--.||.|+||-.. ... ++.-=.+-..||..|++|+..+..| ++.+.||..+ -..+
T Consensus 195 V~~p~G~~iTFLDTPGHaA-------------F~a-MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~---VpiV 257 (683)
T KOG1145|consen 195 VTLPSGKSITFLDTPGHAA-------------FSA-MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSAN---VPIV 257 (683)
T ss_pred EecCCCCEEEEecCCcHHH-------------HHH-HHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcC---CCEE
Confidence 4445556789999999522 111 2222234567888899998877554 5788898754 3445
Q ss_pred eccCCCCcccCCCCChhcHHH
Q psy3395 203 LVDLPGMTKVPIGDQPADIEY 223 (775)
Q Consensus 203 gVdLPGlTK~D~~~~~~d~~~ 223 (775)
.- +||+|.- +++..+
T Consensus 258 vA----inKiDkp--~a~pek 272 (683)
T KOG1145|consen 258 VA----INKIDKP--GANPEK 272 (683)
T ss_pred EE----EeccCCC--CCCHHH
Confidence 55 7999954 555443
No 331
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.06 E-value=0.077 Score=54.56 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=24.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||..|+|. +|-.+|.+
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i 62 (218)
T cd03266 34 TGLLGPNGAGKTTTLRMLAGL--LEPDAGFA 62 (218)
T ss_pred EEEECCCCCCHHHHHHHHhCC--cCCCCceE
Confidence 779999999999999999996 35556644
No 332
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.06 E-value=0.077 Score=54.29 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=26.2
Q ss_pred CCCCe-EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 30 MDLPQ-IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 30 i~lP~-IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
+.-.+ ++++|..+|||||||..|+|. +|-.+|.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i 57 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGI--ILPDSGEV 57 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEE
Confidence 44444 679999999999999999996 35455643
No 333
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.03 E-value=0.079 Score=54.58 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=24.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+||||+||+.|+|.. |-.+|.+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i 59 (220)
T cd03263 31 FGLLGHNGAGKTTTLKMLTGEL--RPTSGTA 59 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 7899999999999999999973 5556643
No 334
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.03 E-value=0.079 Score=54.30 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=24.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||.+|+|.. |-.+|.+
T Consensus 31 ~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~i 59 (214)
T TIGR02673 31 LFLTGPSGAGKTTLLKLLYGAL--TPSRGQV 59 (214)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCCceE
Confidence 7899999999999999999973 4456644
No 335
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.02 E-value=0.078 Score=54.06 Aligned_cols=29 Identities=31% Similarity=0.559 Sum_probs=24.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||+.|+|. +|-.+|.+
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i 57 (205)
T cd03226 29 IALTGKNGAGKTTLAKILAGL--IKESSGSI 57 (205)
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCceEE
Confidence 789999999999999999996 35556644
No 336
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=93.01 E-value=0.081 Score=54.79 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=23.8
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..++||||+|.+|+|.. |..+|.
T Consensus 32 v~llG~NGaGKTTlLkti~Gl~--~~~~G~ 59 (237)
T COG0410 32 VALLGRNGAGKTTLLKTIMGLV--RPRSGR 59 (237)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCCee
Confidence 6899999999999999999973 555554
No 337
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.00 E-value=0.088 Score=52.73 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||+.|+|.. |-.+|.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i 57 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR--PPASGEI 57 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCceE
Confidence 47999999999999999999974 5556644
No 338
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.98 E-value=0.085 Score=51.39 Aligned_cols=32 Identities=34% Similarity=0.499 Sum_probs=26.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 67 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR 67 (775)
.++++|..++|||+++++|.|. +|...|.+|-
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~--~~~~~G~i~~ 58 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGL--LKPTSGEILI 58 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCccEEEE
Confidence 5789999999999999999997 3556776553
No 339
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=92.97 E-value=0.58 Score=53.86 Aligned_cols=115 Identities=19% Similarity=0.280 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
.-.|-++|+|.-=-||||||-.|=+-..-+...|.-|--
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQh----------------------------------------- 41 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQH----------------------------------------- 41 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeE-----------------------------------------
Confidence 457899999999999999999998877766666655531
Q ss_pred cCCCCcccccCeEEEEecC--CCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--
Q psy3395 110 TGSNKGISNVPINLRVYSP--NVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS-- 185 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p--~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s-- 185 (775)
.=..++.-+ ..+.+||+|+||--.. -.| +.-=.+-..|...|+.++.-+..|
T Consensus 42 ----------IGA~~v~~~~~~~~~itFiDTPGHeAF-------------t~m-RaRGa~vtDIaILVVa~dDGv~pQTi 97 (509)
T COG0532 42 ----------IGAYQVPLDVIKIPGITFIDTPGHEAF-------------TAM-RARGASVTDIAILVVAADDGVMPQTI 97 (509)
T ss_pred ----------eeeEEEEeccCCCceEEEEcCCcHHHH-------------HHH-HhcCCccccEEEEEEEccCCcchhHH
Confidence 000111111 4678999999995221 111 111112233555667777766544
Q ss_pred HHHHHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 186 DALQIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 186 ~~l~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+++..+|.. |-.++.. ++|+|+.+
T Consensus 98 EAI~hak~a---~vP~iVA----iNKiDk~~ 121 (509)
T COG0532 98 EAINHAKAA---GVPIVVA----INKIDKPE 121 (509)
T ss_pred HHHHHHHHC---CCCEEEE----EecccCCC
Confidence 578888874 4566777 79999873
No 340
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=92.95 E-value=0.055 Score=65.98 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=21.4
Q ss_pred EcCCCCchHHHHHHhhCCCCccccC
Q psy3395 38 VGGQSAGKSSVLENFVGRDFLPRGS 62 (775)
Q Consensus 38 vG~qSsGKSSvLeal~G~~flPr~~ 62 (775)
.|.||||||+|||.|.|..| ++-.
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~m~ 24 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DVMD 24 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-cccc
Confidence 49999999999999999997 7644
No 341
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.92 E-value=0.082 Score=54.21 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=24.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||..|+|. +|-.+|.+
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i 57 (213)
T cd03259 29 LALLGPSGCGKTTLLRLIAGL--ERPDSGEI 57 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCC--CCCCCeEE
Confidence 789999999999999999996 35556644
No 342
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.91 E-value=0.082 Score=53.11 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=25.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|..+|||||||+.|+|.. +-.+|.++
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~ 57 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL--IPNGDNDE 57 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC--CCCCcEEE
Confidence 47899999999999999999973 55556543
No 343
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=92.89 E-value=0.08 Score=55.16 Aligned_cols=30 Identities=37% Similarity=0.465 Sum_probs=24.7
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+|||||||+.|+|. +|-.+|.++
T Consensus 38 ~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~ 67 (233)
T PRK11629 38 MAIVGSSGSGKSTLLHLLGGL--DTPTSGDVI 67 (233)
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCceEEE
Confidence 789999999999999999997 355566443
No 344
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.85 E-value=0.092 Score=53.17 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=25.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|..+||||+|+++|+|.. |-.+|.++
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~ 58 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM--QPSSGNIY 58 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCcEEE
Confidence 47899999999999999999974 55566443
No 345
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.85 E-value=0.085 Score=54.23 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=24.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||+.|+|.. |-.+|.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i 60 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE--KPTRGKI 60 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCceEE
Confidence 48999999999999999999973 4455543
No 346
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=92.84 E-value=0.084 Score=55.26 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+|||||||.+|+|. +|-.+|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~ 58 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL--VEPSSGS 58 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--cCCCccE
Confidence 3889999999999999999997 3545554
No 347
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.83 E-value=0.085 Score=54.40 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=23.9
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||..|+|. +|-.+|.+
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i 57 (220)
T cd03265 29 FGLLGPNGAGKTTTIKMLTTL--LKPTSGRA 57 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCC--CCCCceEE
Confidence 689999999999999999997 35455543
No 348
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.80 E-value=0.55 Score=47.83 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.++++|.+++|||++|.+|.+..+
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~~ 54 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAVL 54 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHHH
Confidence 599999999999999999996544
No 349
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.79 E-value=0.087 Score=54.33 Aligned_cols=29 Identities=38% Similarity=0.558 Sum_probs=24.3
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||.+|+|.. +..+|.+
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i 61 (220)
T cd03293 33 VALVGPSGCGKSTLLRIIAGLE--RPTSGEV 61 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCceEE
Confidence 7899999999999999999973 4456644
No 350
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.78 E-value=0.097 Score=52.23 Aligned_cols=30 Identities=30% Similarity=0.482 Sum_probs=24.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||+||.+|+|. +|..+|.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i 57 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL--EEPDSGSI 57 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCceEE
Confidence 3679999999999999999996 46566643
No 351
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=92.78 E-value=0.091 Score=53.76 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=24.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||+||.+|+|. +|..+|.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i 57 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL--EEPDSGTI 57 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCceE
Confidence 3799999999999999999996 35556643
No 352
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.77 E-value=0.087 Score=53.94 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=23.8
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||..|+|. +|-.+|.
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~--~~~~~G~ 57 (214)
T cd03292 30 VFLVGPSGAGKSTLLKLIYKE--ELPTSGT 57 (214)
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCceE
Confidence 689999999999999999996 4555664
No 353
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.77 E-value=0.094 Score=52.09 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=24.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||+||..|+|.. |-.+|.+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i 57 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL--KPDSGEI 57 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCeEE
Confidence 38899999999999999999973 5455543
No 354
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.72 E-value=0.093 Score=55.68 Aligned_cols=33 Identities=30% Similarity=0.593 Sum_probs=26.6
Q ss_pred CCCCe---EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 30 MDLPQ---IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 30 i~lP~---IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
+.+|. ++++|..+|||||||.+|.|. ++-.+|.
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~--l~p~~G~ 58 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGL--LKPKSGE 58 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhcc--CCCCCCE
Confidence 45555 799999999999999999996 5655553
No 355
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.65 E-value=0.094 Score=54.74 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=24.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||++|+|. +|-.+|.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i 58 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGL--VEPTSGSV 58 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--cCCCCceE
Confidence 3899999999999999999996 35455643
No 356
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.63 E-value=0.097 Score=53.24 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+||||+||+.|+|.. |..+|-
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~ 57 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL--NPEKGE 57 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCee
Confidence 47899999999999999999974 555553
No 357
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.63 E-value=0.097 Score=54.26 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=24.7
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||++|+|. +|-.+|.+
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i 60 (229)
T cd03254 32 VAIVGPTGAGKTTLINLLMRF--YDPQKGQI 60 (229)
T ss_pred EEEECCCCCCHHHHHHHHhcC--cCCCCCEE
Confidence 789999999999999999997 45566654
No 358
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.62 E-value=0.11 Score=51.55 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=20.0
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
|+++|..+|||||+++.|.+.
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHcc
Confidence 899999999999999999985
No 359
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.60 E-value=0.11 Score=49.80 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=25.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccC----ccccccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGS----GIVTRRP 69 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~----g~~TR~p 69 (775)
|+++|..+||||||++.|.+. +|... ..+||.|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~--~~~~~~~~v~~tTr~p 38 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE--FDPNFGFSVSHTTRKP 38 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc--CCccceecccccccCC
Confidence 799999999999999999975 34332 2356665
No 360
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.60 E-value=0.099 Score=54.39 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||.+|+|. +|-.+|.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i 62 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGL--ERPTSGSV 62 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCceE
Confidence 3789999999999999999997 45566643
No 361
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=92.60 E-value=0.093 Score=57.31 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=25.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|..+||||+|++.|+|. +|..+|.++
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl--~~p~~G~i~ 65 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNAL--LLPDTGTIE 65 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCC--CCCCCcEEE
Confidence 4899999999999999999996 465667543
No 362
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.60 E-value=0.1 Score=53.78 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=25.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+|||||||+.|+|.. |-.+|-++
T Consensus 16 ~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i~ 45 (213)
T PRK15177 16 IGILAAPGSGKTTLTRLLCGLD--APDEGDFI 45 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCc--cCCCCCEE
Confidence 6799999999999999999974 55677654
No 363
>KOG1486|consensus
Probab=92.57 E-value=0.17 Score=52.73 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
-+++.||=.|.|||+||-.|++..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch
Confidence 579999999999999999998753
No 364
>KOG0075|consensus
Probab=92.56 E-value=0.34 Score=46.72 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=42.7
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC---ccchHHHHHHHhcCCCCCcceeccC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD---LATSDALQIAKQVDPDVLNLTLVDL 206 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d---~~~s~~l~lar~~DP~g~RtigVdL 206 (775)
.....+-|+||- | ..+.|-..|-+.=++|+.+|-+|+.| .+-++.-.+.-+--=.| +.+.|
T Consensus 64 nvtiklwD~gGq--------~-----rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~g-ip~LV-- 127 (186)
T KOG0075|consen 64 NVTIKLWDLGGQ--------P-----RFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTG-IPLLV-- 127 (186)
T ss_pred ceEEEEEecCCC--------c-----cHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcC-CcEEE--
Confidence 444568899983 2 35789999999989888888777654 23333333332211133 34444
Q ss_pred CCC-cccCCCC
Q psy3395 207 PGM-TKVPIGD 216 (775)
Q Consensus 207 PGl-TK~D~~~ 216 (775)
+ ||.|+-+
T Consensus 128 --LGnK~d~~~ 136 (186)
T KOG0075|consen 128 --LGNKIDLPG 136 (186)
T ss_pred --ecccccCcc
Confidence 4 8888764
No 365
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=92.56 E-value=0.067 Score=54.58 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
..-++++|..+||||+||++|.|.
T Consensus 22 ~g~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 22 PGLTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999999975
No 366
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=92.54 E-value=0.1 Score=55.61 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=25.0
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+|||||||+.|+|. +|-.+|.++
T Consensus 42 ~~i~G~NGsGKSTLl~~l~Gl--~~p~~G~i~ 71 (267)
T PRK15112 42 LAIIGENGSGKSTLAKMLAGM--IEPTSGELL 71 (267)
T ss_pred EEEEcCCCCCHHHHHHHHhCC--CCCCCCEEE
Confidence 789999999999999999997 455666543
No 367
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.53 E-value=0.098 Score=54.47 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+|||||||.+|+|. +|..+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~ 56 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF--LRPTSGS 56 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC--CCCCCce
Confidence 3789999999999999999996 4555664
No 368
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.53 E-value=0.099 Score=53.37 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=24.3
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||+.|+|. +|..+|.+
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i 57 (208)
T cd03268 29 YGFLGPNGAGKTTTMKIILGL--IKPDSGEI 57 (208)
T ss_pred EEEECCCCCCHHHHHHHHhCC--cCCCceEE
Confidence 789999999999999999996 35566643
No 369
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=92.51 E-value=0.098 Score=54.61 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=27.2
Q ss_pred CCCCe-EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 30 MDLPQ-IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 30 i~lP~-IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
+.-.+ ++++|..+|||||||++|.|. +|-.+|.++
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~ 61 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERF--YDPTSGEIL 61 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhcc--CCCCCCEEE
Confidence 44443 799999999999999999997 365666543
No 370
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.49 E-value=0.1 Score=53.08 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=24.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+|||||||+.|+|.. |-.+|.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 54 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE--KFDSGQ 54 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCeE
Confidence 37899999999999999999973 445553
No 371
>KOG0078|consensus
Probab=92.49 E-value=0.71 Score=47.13 Aligned_cols=120 Identities=17% Similarity=0.253 Sum_probs=73.4
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhh
Q psy3395 29 QMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDR 108 (775)
Q Consensus 29 ~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 108 (775)
.-.+-.|++||+.++|||++|..+..-.|-+ +=+.| +-| ||
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~--~~~sT---iGI---------------------DF------------- 49 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNT--SFIST---IGI---------------------DF------------- 49 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcC--Cccce---EEE---------------------EE-------------
Confidence 3456679999999999999999999877621 00000 000 00
Q ss_pred hcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--
Q psy3395 109 ITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD-- 186 (775)
Q Consensus 109 ~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~-- 186 (775)
..-.+++-+ ...-|.+.|+-| | +..+.+..+|.....-++|.+- -..+.+...
T Consensus 50 ----------k~kti~l~g-~~i~lQiWDtaG--------Q-----erf~ti~~sYyrgA~gi~LvyD-itne~Sfeni~ 104 (207)
T KOG0078|consen 50 ----------KIKTIELDG-KKIKLQIWDTAG--------Q-----ERFRTITTAYYRGAMGILLVYD-ITNEKSFENIR 104 (207)
T ss_pred ----------EEEEEEeCC-eEEEEEEEEccc--------c-----hhHHHHHHHHHhhcCeeEEEEE-ccchHHHHHHH
Confidence 000111111 123466888776 2 3568899999999998877653 333222222
Q ss_pred -HHHHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 187 -ALQIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 187 -~l~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.++.+++.-|.+--.+.| =+|+|+.+
T Consensus 105 ~W~~~I~e~a~~~v~~~Lv----GNK~D~~~ 131 (207)
T KOG0078|consen 105 NWIKNIDEHASDDVVKILV----GNKCDLEE 131 (207)
T ss_pred HHHHHHHhhCCCCCcEEEe----eccccccc
Confidence 456666665666777777 69999876
No 372
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.48 E-value=0.1 Score=55.46 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=26.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|.++|||||||+.|+|. ++-.+|.++
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl--~~p~~G~I~ 58 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGK--LKPNLGKFD 58 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--cCCCCceEe
Confidence 5899999999999999999997 466677664
No 373
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.47 E-value=0.1 Score=53.27 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=25.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++|+|..+||||+||.+|+|. .|..+|.++
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~ 66 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRF--LEAEEGKIE 66 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhcc--cCCCCCeEE
Confidence 3889999999999999999997 366667554
No 374
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=92.45 E-value=0.11 Score=50.77 Aligned_cols=24 Identities=21% Similarity=0.636 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+|+|||+.++||||++..+++..|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f 25 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY 25 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 589999999999999998877666
No 375
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.44 E-value=0.11 Score=54.65 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=25.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|..+||||+||..|+|. +|-.+|.++
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~ 61 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRL--IDPTEGSIL 61 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCcEEE
Confidence 3789999999999999999996 355666544
No 376
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.42 E-value=0.11 Score=51.14 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||+.|.|.. |-.+|.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~v 57 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY--KPDSGEI 57 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCeEE
Confidence 36799999999999999999974 4455543
No 377
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.41 E-value=0.11 Score=51.67 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=24.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||..|.|.. |-.+|.+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i 59 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL--RPTSGRV 59 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc--CCCCCeE
Confidence 37899999999999999999973 5555643
No 378
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.40 E-value=0.11 Score=51.22 Aligned_cols=30 Identities=33% Similarity=0.649 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||||++.|.|. +|-.+|.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i 58 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGL--WPWGSGRI 58 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCCceE
Confidence 3799999999999999999996 35566644
No 379
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.39 E-value=0.11 Score=54.99 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=27.6
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccccccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 69 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p 69 (775)
+.+||..+|||||||.+|.|. ++..+|.++-+.
T Consensus 33 ~~iiGPNGaGKSTLlK~iLGl--l~p~~G~i~~~g 65 (254)
T COG1121 33 TALIGPNGAGKSTLLKAILGL--LKPSSGEIKIFG 65 (254)
T ss_pred EEEECCCCCCHHHHHHHHhCC--CcCCcceEEEcc
Confidence 789999999999999999995 566777766443
No 380
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.39 E-value=0.11 Score=53.20 Aligned_cols=30 Identities=37% Similarity=0.506 Sum_probs=25.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||..|+|.. |..+|.+
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~--~~~~G~i 55 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFE--TPQSGRV 55 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCceE
Confidence 38999999999999999999973 5556643
No 381
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=92.38 E-value=0.1 Score=54.41 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=24.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||..|+|.. |-.+|.+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~--~p~~G~i 58 (236)
T TIGR03864 30 VALLGPNGAGKSTLFSLLTRLY--VAQEGQI 58 (236)
T ss_pred EEEECCCCCCHHHHHHHHhCCc--CCCceEE
Confidence 6799999999999999999973 5556643
No 382
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=92.37 E-value=0.11 Score=54.19 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=24.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||++|+|...+|..+|.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i 59 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI 59 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCcceE
Confidence 38899999999999999999973123445543
No 383
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.37 E-value=0.11 Score=53.27 Aligned_cols=30 Identities=37% Similarity=0.540 Sum_probs=24.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||..|+|.. |-.+|.+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~--~p~~G~i 56 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL--KPTSGSI 56 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC--CCCCCEE
Confidence 37999999999999999999973 5455643
No 384
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=92.34 E-value=0.11 Score=54.38 Aligned_cols=30 Identities=30% Similarity=0.596 Sum_probs=24.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||+||..|.|. +|..+|.+
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i 60 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGI--VPRDAGNI 60 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCcEE
Confidence 3789999999999999999997 35556643
No 385
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=92.33 E-value=0.11 Score=53.65 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||..|+|. +|-.+|.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i 62 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGL--LKPTSGSI 62 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCceE
Confidence 4899999999999999999997 35556643
No 386
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.31 E-value=0.11 Score=53.85 Aligned_cols=29 Identities=31% Similarity=0.584 Sum_probs=24.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+||||+||.+|+|.. |-.+|.+
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i 57 (230)
T TIGR03410 29 TCVLGRNGVGKTTLLKTLMGLL--PVKSGSI 57 (230)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCCCEE
Confidence 8999999999999999999973 5555643
No 387
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=92.31 E-value=0.12 Score=52.55 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||+.|.|. +|-.+|.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i 57 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGL--SPPLAGRV 57 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCcEE
Confidence 3789999999999999999996 35566644
No 388
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.28 E-value=0.12 Score=53.23 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=25.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|..+||||+||+.|+|. .|-.+|.++
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~ 69 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGL--LHVESGQIQ 69 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC--CCCCCeeEE
Confidence 3789999999999999999996 366667543
No 389
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=92.28 E-value=0.11 Score=54.42 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=24.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||+.|+|.. |..+|.+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i 59 (242)
T PRK11124 31 LVLLGPSGAGKSSLLRVLNLLE--MPRSGTL 59 (242)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCceEE
Confidence 7899999999999999999974 5556643
No 390
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.28 E-value=0.099 Score=54.17 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=20.2
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
++++|..+|||||||++|+|.
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 29 TALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999997
No 391
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=92.26 E-value=0.12 Score=53.37 Aligned_cols=29 Identities=38% Similarity=0.535 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+|||||||.+|+|.. |-.+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~ 61 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD--NPTSGE 61 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcE
Confidence 47899999999999999999973 545554
No 392
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=92.25 E-value=0.11 Score=53.10 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||..|+|.- |-.+|.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~v 57 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE--EPTSGRI 57 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCceEE
Confidence 36899999999999999999973 4455643
No 393
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.23 E-value=0.12 Score=51.17 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=24.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||+||..|+|. +|-.+|.+
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~--~~~~~G~i 59 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRL--YDPTSGEI 59 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcC--CCCCCCEE
Confidence 4899999999999999999997 35555643
No 394
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.22 E-value=0.11 Score=53.99 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=24.6
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+||||+||.+|+|.. |-.+|.+
T Consensus 30 ~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~v 58 (236)
T cd03253 30 VAIVGPSGSGKSTILRLLFRFY--DVSSGSI 58 (236)
T ss_pred EEEECCCCCCHHHHHHHHhccc--CCCCCEE
Confidence 7899999999999999999973 6566644
No 395
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.20 E-value=0.12 Score=52.52 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=24.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||+||+.|.|...++-.+|.+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i 59 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI 59 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCccEE
Confidence 47899999999999999999973123344543
No 396
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.20 E-value=0.12 Score=52.98 Aligned_cols=31 Identities=42% Similarity=0.691 Sum_probs=25.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 67 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR 67 (775)
.+++|..+||||++|.+|+|. +.| ++|.||=
T Consensus 30 ~ailGPNGAGKSTlLk~LsGe-l~p-~~G~v~~ 60 (259)
T COG4559 30 LAILGPNGAGKSTLLKALSGE-LSP-DSGEVTL 60 (259)
T ss_pred EEEECCCCccHHHHHHHhhCc-cCC-CCCeEee
Confidence 789999999999999999997 334 5566653
No 397
>KOG0091|consensus
Probab=92.19 E-value=0.28 Score=48.03 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=44.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCc------ccccc-------cEEEEEeeccc-c-------------ceeeec
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSG------IVTRR-------PLVLQLINSMT-E-------------YAEFLH 86 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g------~~TR~-------p~~l~l~~~~~-~-------------~~~~~~ 86 (775)
+++||||.-.||||||.-++.-.| |-=++ .-.|. -+.|+|=.+.. + .+.++-
T Consensus 10 rlivigdstvgkssll~~ft~gkf-aelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllv 88 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKF-AELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLV 88 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCcc-cccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEE
Confidence 589999999999999999986665 42221 11121 14555543321 1 122222
Q ss_pred cCCccccChHHHHHHHHHHHhhh
Q psy3395 87 CKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 87 ~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
..-....+|++|...+.++...+
T Consensus 89 yditnr~sfehv~~w~~ea~m~~ 111 (213)
T KOG0091|consen 89 YDITNRESFEHVENWVKEAAMAT 111 (213)
T ss_pred EeccchhhHHHHHHHHHHHHHhc
Confidence 22233458899999888775544
No 398
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=92.19 E-value=0.12 Score=53.67 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+|||||||..|+|.. |-.+|.
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~--~p~~G~ 66 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLD--DGSSGE 66 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCCee
Confidence 48999999999999999999973 545554
No 399
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=92.18 E-value=0.12 Score=54.89 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=24.3
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||+.|+|.. |-.+|.+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i 58 (255)
T PRK11248 30 LVVLGPSGCGKTTLLNLIAGFV--PYQHGSI 58 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 7899999999999999999973 5555643
No 400
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.16 E-value=0.12 Score=53.18 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=25.1
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+||||+||.+|+|.. |..+|.++
T Consensus 33 ~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~ 62 (220)
T cd03245 33 VAIIGRVGSGKSTLLKLLAGLY--KPTSGSVL 62 (220)
T ss_pred EEEECCCCCCHHHHHHHHhcCc--CCCCCeEE
Confidence 7899999999999999999973 55666543
No 401
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.16 E-value=0.11 Score=55.99 Aligned_cols=30 Identities=37% Similarity=0.647 Sum_probs=25.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+|||||||++|+|. +|-.+|.++
T Consensus 36 ~~iiG~NGaGKSTLl~~l~Gl--~~p~~G~i~ 65 (287)
T PRK13641 36 VALVGHTGSGKSTLMQHFNAL--LKPSSGTIT 65 (287)
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCCcEEE
Confidence 789999999999999999996 466677543
No 402
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=92.11 E-value=0.12 Score=54.49 Aligned_cols=30 Identities=33% Similarity=0.615 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||+||+.|+|. +|-.+|.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i 60 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGR--LAPDHGTA 60 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCcEE
Confidence 3799999999999999999997 35566643
No 403
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=92.09 E-value=0.13 Score=54.26 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+||||+||+.|+|...++..+|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~ 65 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGHPAYKILEGD 65 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCcCCCce
Confidence 3789999999999999999997323445554
No 404
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=92.09 E-value=0.13 Score=53.26 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=24.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||+||+.|+|.- |-.+|.+
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~i 65 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYANY--LPDSGRI 65 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCCeE
Confidence 38899999999999999999973 4455543
No 405
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=92.07 E-value=0.52 Score=50.44 Aligned_cols=128 Identities=19% Similarity=0.331 Sum_probs=81.9
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNK 114 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~ 114 (775)
|..||.-.-||++|--||++.- .-.+ +....+++++...-++. ..
T Consensus 15 igtiGHvdHGKTTLtaAit~~l-a~~~---------------------------~~~~~~y~~id~aPeEk-------~r 59 (394)
T COG0050 15 VGTIGHVDHGKTTLTAAITTVL-AKKG---------------------------GAEAKAYDQIDNAPEEK-------AR 59 (394)
T ss_pred EEEeccccCchhhHHHHHHHHH-Hhhc---------------------------cccccchhhhccCchHh-------hc
Confidence 8899999999999999999752 1111 12334555555433332 12
Q ss_pred cccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-cchHHHHHHHh
Q psy3395 115 GISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-ATSDALQIAKQ 193 (775)
Q Consensus 115 ~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-~~s~~l~lar~ 193 (775)
|++-.+-+++.... --+-..||.||-. .-|++||..-.+-.-+ ||.|++++..+ .+-+=+-++|+
T Consensus 60 GITIntahveyet~-~rhyahVDcPGHa------------DYvKNMItgAaqmDgA-ILVVsA~dGpmPqTrEHiLlarq 125 (394)
T COG0050 60 GITINTAHVEYETA-NRHYAHVDCPGHA------------DYVKNMITGAAQMDGA-ILVVAATDGPMPQTREHILLARQ 125 (394)
T ss_pred CceeccceeEEecC-CceEEeccCCChH------------HHHHHHhhhHHhcCcc-EEEEEcCCCCCCcchhhhhhhhh
Confidence 33333444444432 3467799999942 2578999887766655 46666555443 44555778888
Q ss_pred cCCCCCcceeccCCCCcccCCCCC
Q psy3395 194 VDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 194 ~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+.- ++.+.+ ++|+|+++.
T Consensus 126 vGv--p~ivvf----lnK~Dmvdd 143 (394)
T COG0050 126 VGV--PYIVVF----LNKVDMVDD 143 (394)
T ss_pred cCC--cEEEEE----EecccccCc
Confidence 753 477777 899999973
No 406
>COG3910 Predicted ATPase [General function prediction only]
Probab=92.05 E-value=0.17 Score=50.98 Aligned_cols=35 Identities=31% Similarity=0.588 Sum_probs=27.9
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHhh-CCCCccccCc
Q psy3395 29 QMDLPQIAVVGGQSAGKSSVLENFV-GRDFLPRGSG 63 (775)
Q Consensus 29 ~i~lP~IvVvG~qSsGKSSvLeal~-G~~flPr~~g 63 (775)
.+.-|--+++|..++|||+|||||. |..|.+-|.+
T Consensus 34 eF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~ 69 (233)
T COG3910 34 EFRAPITFITGENGSGKSTLLEAIAAGMGFNAAGGG 69 (233)
T ss_pred cccCceEEEEcCCCccHHHHHHHHHhhccccccCCC
Confidence 4677888999999999999999995 4555565544
No 407
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.02 E-value=0.13 Score=53.60 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=25.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|.++||||+||+.|.|.. |...|.++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~--~~~~G~i~ 58 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFE--TPTSGEIL 58 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceEEE
Confidence 47999999999999999999974 55566443
No 408
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.98 E-value=0.14 Score=51.87 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||..|.|....|..+|.+
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i 66 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRKTAGVITGEI 66 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcceEE
Confidence 47899999999999999999974223455643
No 409
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=91.96 E-value=0.13 Score=52.31 Aligned_cols=31 Identities=39% Similarity=0.558 Sum_probs=25.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|..+|||||||+.|+|.. |-.+|.++
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~--~~~~G~i~ 63 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGEL--EKLSGSVS 63 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcC--CCCCCeEE
Confidence 37899999999999999999973 55666543
No 410
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.95 E-value=0.13 Score=52.72 Aligned_cols=38 Identities=21% Similarity=0.425 Sum_probs=27.6
Q ss_pred CCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 25 GVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 25 G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
+++..+.--.++++|..+|||||||..|.|.- |-.+|-
T Consensus 16 ~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 53 (214)
T cd03297 16 KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLE--KPDGGT 53 (214)
T ss_pred CceEEEcceeEEEECCCCCCHHHHHHHHhCCC--CCCCce
Confidence 33333433347999999999999999999973 545564
No 411
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=91.95 E-value=0.13 Score=53.51 Aligned_cols=30 Identities=33% Similarity=0.451 Sum_probs=24.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||||+.+|+|.. |-.+|.+
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i 42 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLA--QPTSGGV 42 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCceE
Confidence 38999999999999999999973 5455643
No 412
>PRK10908 cell division protein FtsE; Provisional
Probab=91.95 E-value=0.13 Score=53.17 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=24.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||..|.|. +|-.+|-+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i 59 (222)
T PRK10908 31 AFLTGHSGAGKSTLLKLICGI--ERPSAGKI 59 (222)
T ss_pred EEEECCCCCCHHHHHHHHhCC--CCCCceEE
Confidence 689999999999999999996 36566644
No 413
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=91.92 E-value=0.13 Score=53.62 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+||||+||+.|+|.. |-.+|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~ 58 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFY--VPENGR 58 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCCE
Confidence 38999999999999999999973 555564
No 414
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.90 E-value=0.14 Score=52.31 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=24.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||+|++.|+|.. |-.+|.+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~--~p~~G~v 58 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA--RPDAGEV 58 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 47899999999999999999974 5455643
No 415
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.90 E-value=0.13 Score=53.48 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=24.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||..|+|.. |-.+|.+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i 59 (234)
T cd03251 31 VALVGPSGSGKSTLVNLIPRFY--DVDSGRI 59 (234)
T ss_pred EEEECCCCCCHHHHHHHHhccc--cCCCCEE
Confidence 7899999999999999999974 5556644
No 416
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.90 E-value=0.14 Score=52.48 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=24.7
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+|||||||+.|+|.. |-.+|.++
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~ 60 (207)
T PRK13539 31 LVLTGPNGSGKTTLLRLIAGLL--PPAAGTIK 60 (207)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCCceEE
Confidence 6899999999999999999974 55566443
No 417
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=91.87 E-value=0.13 Score=53.12 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=24.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||+.|+|. +|-.+|.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i 57 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGI--LRPTSGEI 57 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCceEE
Confidence 4789999999999999999996 45556643
No 418
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.86 E-value=0.14 Score=53.77 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=24.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+||||+||..|+|. +|..+|.+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i 58 (242)
T cd03295 30 LVLIGPSGSGKTTTMKMINRL--IEPTSGEI 58 (242)
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCCceE
Confidence 679999999999999999997 35566643
No 419
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.86 E-value=0.14 Score=52.12 Aligned_cols=36 Identities=33% Similarity=0.495 Sum_probs=26.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC-CccccCccccccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD-FLPRGSGIVTRRP 69 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~-flPr~~g~~TR~p 69 (775)
-|+++|..+||||||+..|.+.. -+...-...||.|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 38999999999999999999862 0123334567766
No 420
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.85 E-value=0.13 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.707 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~ 55 (775)
|.|.|||..+||||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999864
No 421
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.84 E-value=0.13 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
.++++|..+|||||||+.|+|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccC
Confidence 47899999999999999999974
No 422
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.83 E-value=0.1 Score=51.18 Aligned_cols=22 Identities=36% Similarity=0.795 Sum_probs=17.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
+||++|..|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5999999999999999999854
No 423
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=91.83 E-value=0.15 Score=51.08 Aligned_cols=30 Identities=33% Similarity=0.608 Sum_probs=24.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||||++.|+|. +|-.+|.+
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~--~~~~~G~v 56 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGL--LKPSSGEI 56 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCcEE
Confidence 4789999999999999999996 35566644
No 424
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=91.80 E-value=0.14 Score=53.17 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=24.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||+.|.|. +|-.+|.+
T Consensus 36 ~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i 64 (225)
T PRK10247 36 KLITGPSGCGKSTLLKIVASL--ISPTSGTL 64 (225)
T ss_pred EEEECCCCCCHHHHHHHHhcc--cCCCCCeE
Confidence 789999999999999999996 35556643
No 425
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.79 E-value=0.13 Score=55.58 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=25.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||+||+.|.|. ++-.+|.+
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i 63 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGL--LQPTEGKV 63 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcC--CCCCCcEE
Confidence 3899999999999999999997 35566644
No 426
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.77 E-value=0.14 Score=55.39 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=24.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||.+|+|. +|-.+|.+
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i 68 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGL--IISETGQT 68 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCCceE
Confidence 3789999999999999999997 35556654
No 427
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.77 E-value=0.14 Score=55.22 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=24.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||++|+|.- |-.+|.+
T Consensus 36 ~~i~G~nGaGKSTLl~~i~G~~--~p~~G~i 64 (279)
T PRK13635 36 VAIVGHNGSGKSTLAKLLNGLL--LPEAGTI 64 (279)
T ss_pred EEEECCCCCcHHHHHHHHhcCC--CCCCcEE
Confidence 7899999999999999999973 5566644
No 428
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.75 E-value=0.14 Score=54.89 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+|||||||..|+|. +|-.+|.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~ 65 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGL--LKPQSGE 65 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCCce
Confidence 4789999999999999999997 3555664
No 429
>KOG1424|consensus
Probab=91.75 E-value=0.21 Score=57.06 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
=.|-.||=.++||||+||+|+|...
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~Kk 339 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKK 339 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCce
Confidence 3467799999999999999999875
No 430
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=91.74 E-value=0.14 Score=53.60 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=25.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|..+||||+|++.|+|. +|..+|.++
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~ 58 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGL--EQPDSGRIR 58 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCceEEE
Confidence 4789999999999999999996 466666543
No 431
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.72 E-value=0.14 Score=55.10 Aligned_cols=29 Identities=48% Similarity=0.702 Sum_probs=24.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+||||+|++.|+|. ++..+|.+
T Consensus 33 ~~i~G~NGsGKSTLl~~l~Gl--~~p~~G~i 61 (277)
T PRK13652 33 IAVIGPNGAGKSTLFRHFNGI--LKPTSGSV 61 (277)
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCceEE
Confidence 689999999999999999996 35556654
No 432
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.72 E-value=0.14 Score=54.82 Aligned_cols=30 Identities=33% Similarity=0.526 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||..|+|. +|-.+|.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i 58 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGL--LRPQKGAV 58 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCC--CCCCccEE
Confidence 3789999999999999999996 45566644
No 433
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=91.72 E-value=0.14 Score=54.55 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||..|+|.. |-.+|.+
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~--~p~~G~i 69 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLE--TPSAGEL 69 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCeEE
Confidence 48899999999999999999973 5556654
No 434
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=91.72 E-value=0.14 Score=55.13 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=25.0
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+||||+||.+|+|.- |..+|.++
T Consensus 39 ~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~ 68 (280)
T PRK13633 39 LVILGRNGSGKSTIAKHMNALL--IPSEGKVY 68 (280)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCCceEE
Confidence 7899999999999999999973 55666543
No 435
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=91.71 E-value=0.14 Score=52.48 Aligned_cols=29 Identities=34% Similarity=0.597 Sum_probs=24.7
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+||||||+.+|.|. +|..+|.+
T Consensus 27 ~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i 55 (213)
T TIGR01277 27 VAIMGPSGAGKSTLLNLIAGF--IEPASGSI 55 (213)
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCCcEE
Confidence 799999999999999999997 46666643
No 436
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=91.70 E-value=0.15 Score=51.75 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=23.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+||||+||+.|+|.. |-.+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 56 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL--RPDSGE 56 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCccE
Confidence 37899999999999999999973 444553
No 437
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.69 E-value=0.15 Score=50.80 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=23.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+||||+||++|.|.. |-.+|.
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~~--~~~~G~ 58 (178)
T cd03247 31 IALLGRSGSGKSTLLQLLTGDL--KPQQGE 58 (178)
T ss_pred EEEECCCCCCHHHHHHHHhccC--CCCCCE
Confidence 6799999999999999999974 444553
No 438
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.69 E-value=0.14 Score=54.75 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=23.9
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||++|+|. +|-.+|.
T Consensus 53 ~~l~G~nGsGKSTLl~~L~Gl--~~p~~G~ 80 (269)
T cd03294 53 FVIMGLSGSGKSTLLRCINRL--IEPTSGK 80 (269)
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCCeE
Confidence 789999999999999999997 3555563
No 439
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.68 E-value=0.14 Score=53.56 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=23.7
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||.+|+|.. |..+|.
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~ 58 (239)
T cd03296 31 VALLGPSGSGKTTLLRLIAGLE--RPDSGT 58 (239)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCceE
Confidence 7899999999999999999973 545564
No 440
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.66 E-value=1.3 Score=49.78 Aligned_cols=154 Identities=20% Similarity=0.235 Sum_probs=79.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEe---ecc----ccceeeeccCCccccChHHHHHHHHHHHh
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLI---NSM----TEYAEFLHCKGKKFVDFDEVRREIEAETD 107 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~---~~~----~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 107 (775)
|+.||..|+||++.|==|..+-+ .. ..--+.. .|++- -.. ..|+..+.++-....+..+...+|....
T Consensus 206 i~LVGPTGVGKTTTlAKLAar~~--~~-~~~~kVa-iITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~- 280 (407)
T COG1419 206 IALVGPTGVGKTTTLAKLAARYV--ML-KKKKKVA-IITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR- 280 (407)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH--hh-ccCcceE-EEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh-
Confidence 78999999999999988877632 01 1111111 11111 011 1244444444444455555555544321
Q ss_pred hhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhcc-ccEEEEEecCCCCccchH
Q psy3395 108 RITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKE-TCLILAVTPANTDLATSD 186 (775)
Q Consensus 108 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~-~~iILaV~~a~~d~~~s~ 186 (775)
++ ++.|||+-|..... ...+.+ +..|+... +--+..|.+|+.- ..|
T Consensus 281 ---------------------~~-d~ILVDTaGrs~~D--------~~~i~e-l~~~~~~~~~i~~~Lvlsat~K--~~d 327 (407)
T COG1419 281 ---------------------DC-DVILVDTAGRSQYD--------KEKIEE-LKELIDVSHSIEVYLVLSATTK--YED 327 (407)
T ss_pred ---------------------cC-CEEEEeCCCCCccC--------HHHHHH-HHHHHhccccceEEEEEecCcc--hHH
Confidence 12 89999999975421 122333 44555543 3334556666653 234
Q ss_pred HHHHHHhcCCCCCcceeccCCCCcccCCCCChhcHHHHHhhcccc
Q psy3395 187 ALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQ 231 (775)
Q Consensus 187 ~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~~d~~~~l~~~~~~ 231 (775)
.-....++-.-+..+ +| +||.|-...--+...++...-.|
T Consensus 328 lkei~~~f~~~~i~~-~I----~TKlDET~s~G~~~s~~~e~~~P 367 (407)
T COG1419 328 LKEIIKQFSLFPIDG-LI----FTKLDETTSLGNLFSLMYETRLP 367 (407)
T ss_pred HHHHHHHhccCCcce-eE----EEcccccCchhHHHHHHHHhCCC
Confidence 444444444433344 55 69999765544555555443334
No 441
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=91.65 E-value=0.14 Score=54.20 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
++.+-.++||..+||||++|+||.|.
T Consensus 23 ~~~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 23 FDPQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45677999999999999999999986
No 442
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.65 E-value=0.15 Score=53.86 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=25.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|..+|||||||..|+|.. |-.+|.++
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~--~p~~G~i~ 57 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVL--KPDEGDIE 57 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--cCCCCeEE
Confidence 37899999999999999999973 55566543
No 443
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=91.64 E-value=0.14 Score=53.10 Aligned_cols=29 Identities=41% Similarity=0.689 Sum_probs=24.3
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+||||||+++|+|. +|-.+|.+
T Consensus 51 ~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i 79 (224)
T cd03220 51 IGLIGRNGAGKSTLLRLLAGI--YPPDSGTV 79 (224)
T ss_pred EEEECCCCCCHHHHHHHHhCC--CCCCceEE
Confidence 789999999999999999996 35555643
No 444
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=91.62 E-value=0.16 Score=54.92 Aligned_cols=30 Identities=30% Similarity=0.576 Sum_probs=25.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++|+|..+||||+||+.|.|. +|-.+|.++
T Consensus 66 ~~liG~NGsGKSTLl~~I~Gl--~~p~~G~I~ 95 (282)
T cd03291 66 LAITGSTGSGKTSLLMLILGE--LEPSEGKIK 95 (282)
T ss_pred EEEECCCCCCHHHHHHHHhCC--CCCCCcEEE
Confidence 789999999999999999996 466677554
No 445
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=91.61 E-value=0.15 Score=54.26 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||++|+|. +|-.+|.+
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i 64 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRL--MTPAHGHV 64 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCC--CCCCCcEE
Confidence 4899999999999999999997 35556643
No 446
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.59 E-value=0.16 Score=53.35 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=21.1
Q ss_pred EEEEcCCCCchHHHHHHhhCCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~ 56 (775)
+++||..+|||||||+.|.|..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999986
No 447
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.58 E-value=0.15 Score=53.29 Aligned_cols=30 Identities=23% Similarity=0.510 Sum_probs=24.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+|||||||.+|+|.- +-.+|.++
T Consensus 31 ~~l~G~nGsGKSTLl~~l~G~~--~p~~G~i~ 60 (242)
T TIGR03411 31 RVIIGPNGAGKTTMMDVITGKT--RPDEGSVL 60 (242)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCCCeEE
Confidence 6899999999999999999973 44556433
No 448
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=91.54 E-value=0.15 Score=52.64 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=25.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||+|+..|+|. +|..+|-+
T Consensus 33 ~~~I~G~nGsGKStLl~~l~G~--~~~~~G~i 62 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIGGL--RSVQEGSL 62 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCeEE
Confidence 4899999999999999999996 46666643
No 449
>KOG1707|consensus
Probab=91.53 E-value=0.13 Score=59.46 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=23.6
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
=+||+||++++|||||+=||+.-.|
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef 34 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEF 34 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhc
Confidence 4799999999999999999999987
No 450
>KOG2485|consensus
Probab=91.52 E-value=0.45 Score=51.40 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 7 LEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 7 m~~li~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
...+++++..+-..|...+-. .=.=+++-|||-.+.|||||++|+--.
T Consensus 119 v~~l~~il~~~~~~l~r~irt-~~~~~~vmVvGvPNVGKSsLINa~r~~ 166 (335)
T KOG2485|consen 119 VSPLLKILTILSEELVRFIRT-LNSEYNVMVVGVPNVGKSSLINALRNV 166 (335)
T ss_pred cccHHHHHHHHHHHHHHhhcc-cCCceeEEEEcCCCCChHHHHHHHHHH
Confidence 345566666555555544421 234578999999999999999988643
No 451
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.48 E-value=1.1 Score=46.41 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.++++|.+++|||++|..|...
T Consensus 31 ~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 4899999999999999999743
No 452
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=91.45 E-value=0.16 Score=54.25 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=25.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+|||||||..|+|. +|..+|.++
T Consensus 53 ~~liG~NGsGKSTLlk~L~Gl--~~p~~G~I~ 82 (264)
T PRK13546 53 IGLVGINGSGKSTLSNIIGGS--LSPTVGKVD 82 (264)
T ss_pred EEEECCCCCCHHHHHHHHhCC--cCCCceEEE
Confidence 789999999999999999996 466667544
No 453
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=91.44 E-value=0.16 Score=54.21 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=24.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||+||..|+|. +|-.+|.+
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i 68 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGL--EKPAQGTV 68 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCcEE
Confidence 4789999999999999999997 35556644
No 454
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=91.44 E-value=0.15 Score=53.54 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=24.3
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+||||+||.+|+|.. |-.+|.+
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i 60 (250)
T PRK11264 32 VAIIGPSGSGKTTLLRCINLLE--QPEAGTI 60 (250)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCCeEE
Confidence 6799999999999999999973 5556654
No 455
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.42 E-value=0.16 Score=54.40 Aligned_cols=31 Identities=39% Similarity=0.548 Sum_probs=26.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|..+|||||||.+|+|. +|..+|.++
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~ 60 (275)
T PRK13639 30 MVALLGPNGAGKSTLFLHFNGI--LKPTSGEVL 60 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCccEEE
Confidence 4899999999999999999996 466677543
No 456
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.42 E-value=0.15 Score=56.65 Aligned_cols=30 Identities=17% Similarity=0.496 Sum_probs=26.1
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
|+|+|..+|||||++++|++. +|.+..++|
T Consensus 165 ilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 165 MLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred EEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 999999999999999999985 577766655
No 457
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=91.39 E-value=0.16 Score=54.14 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=24.0
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+||||+|+++|.|. +|-.+|.+
T Consensus 40 ~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i 68 (265)
T PRK10575 40 TGLIGHNGSGKSTLLKMLGRH--QPPSEGEI 68 (265)
T ss_pred EEEECCCCCCHHHHHHHHcCC--CCCCCCEE
Confidence 689999999999999999996 35455543
No 458
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.39 E-value=0.15 Score=54.36 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=24.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||||+++|+|. +|..+|.+
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl--~~~~~G~i 66 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGI--EKVKSGEI 66 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCceEE
Confidence 3789999999999999999997 35556643
No 459
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=91.36 E-value=0.16 Score=52.96 Aligned_cols=29 Identities=28% Similarity=0.541 Sum_probs=24.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+||||+||.+|+|.. |-.+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~--~p~~G~ 61 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDP--RATSGR 61 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC--CCCCce
Confidence 36799999999999999999973 555564
No 460
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=91.36 E-value=0.16 Score=53.83 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=24.7
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+|||||||+.|.|.. |-.+|.++
T Consensus 34 ~~l~G~nGsGKSTLl~~i~G~~--~~~~G~i~ 63 (257)
T PRK10619 34 ISIIGSSGSGKSTFLRCINFLE--KPSEGSIV 63 (257)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCCeEEE
Confidence 5799999999999999999973 55566544
No 461
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=91.32 E-value=0.18 Score=53.43 Aligned_cols=29 Identities=31% Similarity=0.556 Sum_probs=24.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||..|+|. +|-.+|.+
T Consensus 30 ~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i 58 (256)
T TIGR03873 30 TGLLGPNGSGKSTLLRLLAGA--LRPDAGTV 58 (256)
T ss_pred EEEECCCCCCHHHHHHHHcCC--CCCCCCEE
Confidence 689999999999999999996 46566643
No 462
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=91.31 E-value=0.16 Score=53.56 Aligned_cols=29 Identities=24% Similarity=0.543 Sum_probs=24.3
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+||||+||..|+|. .|-.+|.+
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i 62 (255)
T PRK11300 34 VSLIGPNGAGKTTVFNCLTGF--YKPTGGTI 62 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCC--cCCCcceE
Confidence 789999999999999999997 35556643
No 463
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=91.31 E-value=0.16 Score=53.21 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=24.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+||||+||..|+|...+|-.+|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~ 59 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGREDYEVTGGT 59 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCccCCCCceE
Confidence 4799999999999999999997322344553
No 464
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=91.31 E-value=0.17 Score=52.52 Aligned_cols=30 Identities=30% Similarity=0.585 Sum_probs=24.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||+|+.+|+|.. |-.+|.+
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i 37 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLI--PPAKGTV 37 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCceE
Confidence 38999999999999999999963 5455543
No 465
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=91.28 E-value=0.16 Score=52.47 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+||||+|+++|+|. +|-.+|.
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~ 70 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENF--YQPQGGQ 70 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--cCCCCcE
Confidence 3799999999999999999997 3555563
No 466
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=0.17 Score=58.81 Aligned_cols=29 Identities=38% Similarity=0.533 Sum_probs=24.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.+++||..+|||||+++.|.|. +|-.+|.
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~--~~~~~G~ 377 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGF--LAPTQGE 377 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCc--CCCCCce
Confidence 3899999999999999999994 6766663
No 467
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=91.26 E-value=0.17 Score=52.12 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=24.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+||||+||..|+|.. |..+|.+
T Consensus 33 ~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i 61 (221)
T cd03244 33 VGIVGRTGSGKSSLLLALFRLV--ELSSGSI 61 (221)
T ss_pred EEEECCCCCCHHHHHHHHHcCC--CCCCCEE
Confidence 7899999999999999999973 5556644
No 468
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=91.22 E-value=0.6 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
.++-+||-.++||||+.+|||.-.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~ 26 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG 26 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC
Confidence 358899999999999999999765
No 469
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=91.17 E-value=0.18 Score=53.51 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+||||+||..|.|.. |-.+|.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~ 62 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARL--APDAGE 62 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCCE
Confidence 47999999999999999999973 445564
No 470
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.17 E-value=0.17 Score=54.36 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=24.6
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+||||+||..|+|. +|-.+|.+
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i 62 (274)
T PRK13647 34 TALLGPNGAGKSTLLLHLNGI--YLPQRGRV 62 (274)
T ss_pred EEEECCCCCcHHHHHHHHhcC--CCCCceEE
Confidence 899999999999999999996 35556644
No 471
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.11 E-value=0.17 Score=54.37 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=23.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+|||||||+.|+|.- |-.+|.
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~--~p~~G~ 63 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLH--VPTQGS 63 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCceE
Confidence 36899999999999999999974 445554
No 472
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=91.11 E-value=0.64 Score=48.77 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=63.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+.+|..+|||||..+-|.+.- .|++.. |. |.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~---~L------------------------------------------~~- 33 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTL---RL------------------------------------------EP- 33 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGG---G----------------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-Cchhcc---cc------------------------------------------CC-
Confidence 48999999999999999999753 465541 10 00
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCC-CCccc-----hHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPAN-TDLAT-----SDA 187 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~-~d~~~-----s~~ 187 (775)
+.++=.-.+...+..+|.+.|.||-...-....... ++.+ .++-. .++.|..+. .|+.. .+.
T Consensus 34 ---T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~-----~~~i---f~~v~-~LIyV~D~qs~~~~~~l~~~~~~ 101 (232)
T PF04670_consen 34 ---TIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQ-----REEI---FSNVG-VLIYVFDAQSDDYDEDLAYLSDC 101 (232)
T ss_dssp -----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCC-----HHHH---HCTES-EEEEEEETT-STCHHHHHHHHHH
T ss_pred ---cCCceEEEEecCCCcEEEEEEcCCcccccccccccc-----HHHH---HhccC-EEEEEEEcccccHHHHHHHHHHH
Confidence 000111123334556899999999754211100000 1111 23333 456666777 44322 345
Q ss_pred HHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 188 l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
++.+.++.|+-. .-.. +-|.|+...
T Consensus 102 i~~l~~~sp~~~-v~vf----iHK~D~l~~ 126 (232)
T PF04670_consen 102 IEALRQYSPNIK-VFVF----IHKMDLLSE 126 (232)
T ss_dssp HHHHHHHSTT-E-EEEE----EE-CCCS-H
T ss_pred HHHHHHhCCCCe-EEEE----EeecccCCH
Confidence 777888999744 3344 599998854
No 473
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.07 E-value=0.18 Score=51.06 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=24.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
-+||+|..+|||||+||-+.|+- +-..|-+|
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~--~P~~G~i~ 63 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFV--TPSRGSIQ 63 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCc--CcccceEE
Confidence 38999999999999999999963 44445444
No 474
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=91.05 E-value=0.18 Score=53.88 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+||||+||..|+|.- |-.+|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~ 63 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQI--APDHGE 63 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCce
Confidence 38999999999999999999973 444553
No 475
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=91.03 E-value=0.18 Score=53.21 Aligned_cols=29 Identities=28% Similarity=0.594 Sum_probs=24.1
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+||||+||..|+|.. +-.+|.+
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i 57 (252)
T TIGR03005 29 VALIGPSGSGKSTILRILMTLE--PIDEGQI 57 (252)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCceEE
Confidence 7899999999999999999974 4455643
No 476
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.01 E-value=0.18 Score=54.38 Aligned_cols=31 Identities=39% Similarity=0.643 Sum_probs=26.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|..+||||||+.+|+|. +|..+|.++
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl--~~p~~G~i~ 64 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGI--LKPSSGRIL 64 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCccEEE
Confidence 4899999999999999999996 466677543
No 477
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.95 E-value=0.18 Score=54.48 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=24.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+||||+||.+|+|. +|-.+|.
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl--~~p~~G~ 63 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGL--LKPTSGK 63 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcC--CCCCccE
Confidence 3899999999999999999996 4555563
No 478
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=90.92 E-value=0.2 Score=51.65 Aligned_cols=28 Identities=32% Similarity=0.410 Sum_probs=23.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSG 63 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g 63 (775)
.++++|..+||||+||+.|.|.. |-.+|
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 56 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEM--QTLEG 56 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhccC--CCCCC
Confidence 48999999999999999999974 33455
No 479
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=90.91 E-value=0.18 Score=53.33 Aligned_cols=29 Identities=24% Similarity=0.591 Sum_probs=24.6
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||..|+|. +|-.+|.+
T Consensus 33 ~~I~G~NGsGKSTLl~~i~Gl--~~p~~G~i 61 (251)
T PRK09544 33 LTLLGPNGAGKSTLVRVVLGL--VAPDEGVI 61 (251)
T ss_pred EEEECCCCCCHHHHHHHHhCC--CCCCceEE
Confidence 899999999999999999996 45556644
No 480
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=90.89 E-value=0.18 Score=55.17 Aligned_cols=30 Identities=30% Similarity=0.723 Sum_probs=25.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.|+|+|..+|||||+|.+|+|. +|.+.+++
T Consensus 146 ~ili~G~tGsGKTTll~al~~~--~~~~~~iv 175 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDE--IPKDERII 175 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHcc--CCccccEE
Confidence 4999999999999999999985 57666654
No 481
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=90.89 E-value=0.18 Score=53.88 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=24.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+||||+||..|+|.- |-.+|.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~ 63 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGFV--RLASGK 63 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCceE
Confidence 47899999999999999999973 445554
No 482
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=90.85 E-value=0.19 Score=52.56 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=24.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||..|+|. ++-.+|.+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i 58 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKL--EEITSGDL 58 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCceEE
Confidence 3789999999999999999996 35555643
No 483
>KOG0090|consensus
Probab=90.83 E-value=0.72 Score=47.29 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
|.+..+|-+.|||+|++=-|.-
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~ 60 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLIT 60 (238)
T ss_pred CcEEEEecCCCCceeeeeehhc
Confidence 7899999999999998766543
No 484
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.79 E-value=0.2 Score=55.17 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=25.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|..+||||||+..|.|. ++..+|.++
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl--~~p~~G~I~ 84 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGL--IKSKYGTIQ 84 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCCeEE
Confidence 3899999999999999999997 455666543
No 485
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=90.77 E-value=0.2 Score=52.09 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=24.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+||||+||..|+|.. |..+|.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~ 55 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFL--TPASGS 55 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCce
Confidence 37899999999999999999974 545563
No 486
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=90.76 E-value=1 Score=51.84 Aligned_cols=28 Identities=36% Similarity=0.590 Sum_probs=24.7
Q ss_pred CCCCCCeEE-EEcCCCCchHHHHHHhhCC
Q psy3395 28 MQMDLPQIA-VVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 28 ~~i~lP~Iv-VvG~qSsGKSSvLeal~G~ 55 (775)
.+.+.|-|| |||..++|||+|+.+|+.+
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr 92 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRR 92 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHH
Confidence 467888888 9999999999999999854
No 487
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=90.76 E-value=0.18 Score=50.29 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHhh---CCCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFV---GRDF 57 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~---G~~f 57 (775)
+.|-|+|+|..+|||||+.+.|+ |..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~ 31 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTH 31 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 46889999999999999999999 7653
No 488
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.71 E-value=0.2 Score=53.71 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=25.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||+||.+|+|. ++-.+|.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i 59 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGL--LRPQKGKV 59 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCCceE
Confidence 3899999999999999999996 35566644
No 489
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=90.71 E-value=0.2 Score=53.10 Aligned_cols=28 Identities=36% Similarity=0.572 Sum_probs=23.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||..|+|.. |-.+|.
T Consensus 31 ~~i~G~nGsGKSTLl~~i~G~~--~p~~G~ 58 (258)
T PRK13548 31 VAILGPNGAGKSTLLRALSGEL--SPDSGE 58 (258)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCCCE
Confidence 6899999999999999999973 444553
No 490
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=90.70 E-value=0.2 Score=52.90 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=26.4
Q ss_pred CCCCe-EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 30 MDLPQ-IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 30 i~lP~-IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
+.-.+ ++++|..+|||||||..|+|. +|..+|.+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i 59 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARL--LTPQSGTV 59 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCCcEE
Confidence 44444 689999999999999999996 35566643
No 491
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.59 E-value=0.23 Score=51.11 Aligned_cols=27 Identities=30% Similarity=0.598 Sum_probs=23.0
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSG 63 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g 63 (775)
+|+||..+||||++|.+|-|.. +-++|
T Consensus 31 v~iiGpSGSGKSTlLRclN~LE--~~~~G 57 (240)
T COG1126 31 VVIIGPSGSGKSTLLRCLNGLE--EPDSG 57 (240)
T ss_pred EEEECCCCCCHHHHHHHHHCCc--CCCCc
Confidence 7899999999999999999976 44444
No 492
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=90.59 E-value=0.2 Score=54.47 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=24.7
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+|||||||..|+|. +|-.+|.++
T Consensus 22 ~~l~G~NGaGKSTLl~~l~Gl--~~p~~G~i~ 51 (302)
T TIGR01188 22 FGFLGPNGAGKTTTIRMLTTL--LRPTSGTAR 51 (302)
T ss_pred EEEECCCCCCHHHHHHHHhCC--CCCCceEEE
Confidence 679999999999999999996 455566543
No 493
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.59 E-value=0.21 Score=53.95 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=23.9
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||..|+|.. +-.+|.
T Consensus 36 ~~i~G~nGsGKSTLl~~L~Gl~--~p~~G~ 63 (286)
T PRK13646 36 YAIVGQTGSGKSTLIQNINALL--KPTTGT 63 (286)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCCcE
Confidence 7999999999999999999973 555564
No 494
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=90.48 E-value=0.21 Score=53.58 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=22.6
Q ss_pred CCCCe-EEEEcCCCCchHHHHHHhhCCC
Q psy3395 30 MDLPQ-IAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 30 i~lP~-IvVvG~qSsGKSSvLeal~G~~ 56 (775)
+.--+ ++++|..+|||||||++|.|.-
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44443 7899999999999999999963
No 495
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=90.46 E-value=0.23 Score=54.83 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=23.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSG 63 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g 63 (775)
+|++|..+|||||+|+.|.|.. +-++|
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe--~~~~G 58 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE--EPTSG 58 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 8999999999999999999975 44444
No 496
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=90.45 E-value=0.21 Score=54.35 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=25.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|..+|||||||..|+|.. |-.+|.++
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~--~p~~G~i~ 62 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMI--SPDRGKIT 62 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCceEEE
Confidence 38999999999999999999963 44566443
No 497
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=90.42 E-value=0.22 Score=50.43 Aligned_cols=31 Identities=35% Similarity=0.418 Sum_probs=23.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.++++|..+||||+||+.|+|....|..+|.
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~ 67 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRRTGLGVSGE 67 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCceE
Confidence 3789999999999999999996200445554
No 498
>KOG0084|consensus
Probab=90.41 E-value=1.1 Score=45.37 Aligned_cols=114 Identities=18% Similarity=0.322 Sum_probs=69.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
|-.|+|+|+.++|||=|+-.+.+-.| |-.. +.|
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f-~e~~-~sT--------------------------------------------- 41 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTF-TESY-IST--------------------------------------------- 41 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCc-chhh-cce---------------------------------------------
Confidence 45699999999999999999998876 3211 111
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH----
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA---- 187 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~---- 187 (775)
-|+.-....+++.|..+ -|.+=|+-| | +..|.++.+|-++.|.||++- |+..+..
T Consensus 42 --IGVDf~~rt~e~~gk~i-KlQIWDTAG--------Q-----ERFrtit~syYR~ahGii~vy-----DiT~~~SF~~v 100 (205)
T KOG0084|consen 42 --IGVDFKIRTVELDGKTI-KLQIWDTAG--------Q-----ERFRTITSSYYRGAHGIIFVY-----DITKQESFNNV 100 (205)
T ss_pred --eeeEEEEEEeeecceEE-EEEeeeccc--------c-----HHHhhhhHhhccCCCeEEEEE-----EcccHHHhhhH
Confidence 01111112333433333 466777665 3 478899999999999998753 2333332
Q ss_pred ---HHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 188 ---LQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 188 ---l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
++-.+++-+..-.-+.| =+|+|+.++
T Consensus 101 ~~Wi~Ei~~~~~~~v~~lLV----GNK~Dl~~~ 129 (205)
T KOG0084|consen 101 KRWIQEIDRYASENVPKLLV----GNKCDLTEK 129 (205)
T ss_pred HHHHHHhhhhccCCCCeEEE----eeccccHhh
Confidence 33333333344445566 589988764
No 499
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=90.34 E-value=0.23 Score=51.98 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=23.3
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||..|+|.. |-.+|.
T Consensus 50 ~~i~G~NGsGKSTLl~~i~Gl~--~p~~G~ 77 (236)
T cd03267 50 VGFIGPNGAGKTTTLKILSGLL--QPTSGE 77 (236)
T ss_pred EEEECCCCCCHHHHHHHHhCCc--CCCceE
Confidence 6899999999999999999963 444553
No 500
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.33 E-value=0.22 Score=53.88 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+||||+|+..|+|.. |..+|.+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i 64 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLL--QPTSGTV 64 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCCCcEE
Confidence 38999999999999999999973 5556644
Done!