Query psy3395
Match_columns 775
No_of_seqs 305 out of 1822
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:55:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 4E-149 1E-153 1316.8 56.2 742 2-756 21-772 (772)
2 3szr_A Interferon-induced GTP- 100.0 2.9E-93 9.8E-98 836.2 47.8 567 16-750 29-607 (608)
3 2x2e_A Dynamin-1; nitration, h 100.0 3.8E-52 1.3E-56 458.0 28.4 339 3-348 2-344 (353)
4 3t34_A Dynamin-related protein 100.0 3.5E-51 1.2E-55 451.4 23.0 317 7-330 1-330 (360)
5 2aka_B Dynamin-1; fusion prote 100.0 8.3E-39 2.8E-43 341.7 27.6 297 7-310 1-299 (299)
6 1jwy_B Dynamin A GTPase domain 100.0 5.2E-39 1.8E-43 346.4 21.8 305 8-320 1-315 (315)
7 3ljb_A Interferon-induced GTP- 100.0 3.7E-37 1.3E-41 322.4 20.8 265 327-725 2-271 (271)
8 1dyn_A Dynamin; signal transdu 99.6 1.6E-17 5.4E-22 152.3 -2.0 110 528-637 12-121 (125)
9 2j69_A Bacterial dynamin-like 99.6 6.4E-14 2.2E-18 166.5 24.0 169 32-217 69-245 (695)
10 4dhe_A Probable GTP-binding pr 98.8 1.8E-08 6.2E-13 101.6 11.9 127 30-217 27-159 (223)
11 3iev_A GTP-binding protein ERA 98.8 1.1E-07 3.8E-12 101.9 17.2 122 33-216 11-136 (308)
12 3lxx_A GTPase IMAP family memb 98.7 1.8E-08 6.3E-13 103.5 9.0 128 30-217 27-160 (239)
13 2qpt_A EH domain-containing pr 98.7 2.2E-08 7.5E-13 115.8 10.0 165 31-217 64-233 (550)
14 3t5d_A Septin-7; GTP-binding p 98.7 7.5E-08 2.6E-12 101.3 12.7 136 33-217 9-159 (274)
15 1svi_A GTP-binding protein YSX 98.7 5.6E-08 1.9E-12 95.5 10.9 123 30-217 21-149 (195)
16 3pqc_A Probable GTP-binding pr 98.7 1.3E-07 4.3E-12 92.6 12.3 123 30-217 21-148 (195)
17 3iby_A Ferrous iron transport 98.6 6.8E-08 2.3E-12 100.9 9.9 121 32-216 1-124 (256)
18 1h65_A Chloroplast outer envel 98.6 1.8E-07 6.2E-12 98.1 12.7 126 30-217 37-169 (270)
19 2xtp_A GTPase IMAP family memb 98.6 1.8E-07 6.1E-12 97.2 11.4 127 30-216 20-153 (260)
20 1wf3_A GTP-binding protein; GT 98.6 3.2E-07 1.1E-11 98.1 13.4 123 32-217 7-132 (301)
21 2dyk_A GTP-binding protein; GT 98.5 1.5E-07 5.2E-12 89.0 8.5 120 32-217 1-123 (161)
22 2cxx_A Probable GTP-binding pr 98.5 2.7E-07 9.1E-12 90.0 10.4 123 32-218 1-138 (190)
23 3lxw_A GTPase IMAP family memb 98.5 1.9E-07 6.5E-12 96.9 9.5 127 32-217 21-154 (247)
24 2qu8_A Putative nucleolar GTP- 98.5 6.5E-07 2.2E-11 91.0 11.3 27 31-57 28-54 (228)
25 2ged_A SR-beta, signal recogni 98.5 4E-07 1.4E-11 89.3 9.4 45 13-57 29-73 (193)
26 2lkc_A Translation initiation 98.4 5.1E-07 1.7E-11 87.0 9.4 118 29-217 5-122 (178)
27 3def_A T7I23.11 protein; chlor 98.4 1.7E-06 5.7E-11 90.3 14.0 125 31-217 35-166 (262)
28 4dcu_A GTP-binding protein ENG 98.4 5E-07 1.7E-11 102.1 10.3 126 29-217 20-146 (456)
29 2qtf_A Protein HFLX, GTP-bindi 98.4 1.7E-06 5.7E-11 95.1 13.4 126 31-218 178-308 (364)
30 1ega_A Protein (GTP-binding pr 98.4 9.6E-07 3.3E-11 94.3 10.1 124 30-217 6-131 (301)
31 3tkl_A RAS-related protein RAB 98.4 1.9E-06 6.6E-11 84.4 11.6 119 32-217 16-136 (196)
32 3i8s_A Ferrous iron transport 98.3 7.2E-07 2.5E-11 93.9 8.5 26 32-57 3-28 (274)
33 2fh5_B SR-beta, signal recogni 98.3 2.1E-06 7.2E-11 85.8 11.1 118 31-217 6-130 (214)
34 1mky_A Probable GTP-binding pr 98.3 9.5E-07 3.3E-11 99.3 9.4 120 32-215 1-123 (439)
35 3cph_A RAS-related protein SEC 98.3 1.3E-06 4.6E-11 86.8 9.3 120 30-216 18-139 (213)
36 2y8e_A RAB-protein 6, GH09086P 98.3 7.5E-07 2.6E-11 85.6 7.2 118 32-216 14-133 (179)
37 2hjg_A GTP-binding protein ENG 98.3 1.4E-06 4.9E-11 97.8 10.5 123 32-217 3-126 (436)
38 1u8z_A RAS-related protein RAL 98.3 1.6E-06 5.6E-11 82.0 9.3 117 32-216 4-123 (168)
39 1g16_A RAS-related protein SEC 98.3 1.1E-06 3.7E-11 83.8 8.1 117 33-216 4-122 (170)
40 1zbd_A Rabphilin-3A; G protein 98.3 2.3E-06 7.9E-11 84.7 10.5 118 32-216 8-127 (203)
41 1z0j_A RAB-22, RAS-related pro 98.3 1.3E-06 4.5E-11 83.2 8.3 117 33-216 7-125 (170)
42 1nrj_B SR-beta, signal recogni 98.3 2.5E-06 8.4E-11 85.6 10.5 28 30-57 10-37 (218)
43 1z0f_A RAB14, member RAS oncog 98.3 2.1E-06 7.2E-11 82.4 9.6 119 31-216 14-134 (179)
44 2a9k_A RAS-related protein RAL 98.3 2E-06 6.8E-11 83.2 9.4 119 30-216 16-137 (187)
45 2bov_A RAla, RAS-related prote 98.3 2.9E-06 9.8E-11 83.8 10.7 120 29-216 11-133 (206)
46 2il1_A RAB12; G-protein, GDP, 98.3 2.1E-06 7.2E-11 84.6 9.5 118 32-216 26-145 (192)
47 2g6b_A RAS-related protein RAB 98.3 2.3E-06 7.7E-11 82.6 9.2 120 32-217 10-131 (180)
48 1kao_A RAP2A; GTP-binding prot 98.3 3.6E-06 1.2E-10 79.5 10.4 116 33-216 4-122 (167)
49 2ce2_X GTPase HRAS; signaling 98.3 4.9E-06 1.7E-10 78.4 11.2 116 33-217 4-123 (166)
50 2bme_A RAB4A, RAS-related prot 98.2 1.8E-06 6.3E-11 83.8 8.3 118 32-216 10-129 (186)
51 1c1y_A RAS-related protein RAP 98.2 3.9E-06 1.3E-10 79.5 10.4 68 132-216 52-122 (167)
52 1ek0_A Protein (GTP-binding pr 98.2 1.9E-06 6.6E-11 81.8 8.2 117 33-217 4-123 (170)
53 4djt_A GTP-binding nuclear pro 98.2 1.3E-06 4.4E-11 87.6 7.3 70 131-217 61-132 (218)
54 2fn4_A P23, RAS-related protei 98.2 2.3E-06 7.8E-11 82.3 8.8 118 31-216 8-128 (181)
55 1z08_A RAS-related protein RAB 98.2 1E-06 3.4E-11 84.1 6.1 25 33-57 7-31 (170)
56 3gee_A MNME, tRNA modification 98.2 4.9E-06 1.7E-10 94.5 12.5 121 34-218 235-359 (476)
57 1upt_A ARL1, ADP-ribosylation 98.2 1.3E-06 4.5E-11 83.3 6.7 114 32-217 7-123 (171)
58 1ky3_A GTP-binding protein YPT 98.2 9.8E-07 3.3E-11 85.0 5.8 27 31-57 7-33 (182)
59 4dsu_A GTPase KRAS, isoform 2B 98.2 5.7E-06 1.9E-10 80.2 11.3 117 33-217 5-124 (189)
60 3a1s_A Iron(II) transport prot 98.2 4E-06 1.4E-10 87.5 10.7 26 32-57 5-30 (258)
61 2gj8_A MNME, tRNA modification 98.2 7.3E-06 2.5E-10 79.4 11.9 25 33-57 5-29 (172)
62 1wms_A RAB-9, RAB9, RAS-relate 98.2 5.2E-06 1.8E-10 79.7 10.4 26 32-57 7-32 (177)
63 3q72_A GTP-binding protein RAD 98.2 2.3E-06 7.8E-11 81.4 7.7 117 32-217 2-121 (166)
64 2oil_A CATX-8, RAS-related pro 98.2 3.1E-06 1.1E-10 83.0 8.8 118 32-216 25-144 (193)
65 1r8s_A ADP-ribosylation factor 98.2 4.1E-06 1.4E-10 79.4 9.4 111 34-217 2-116 (164)
66 1z06_A RAS-related protein RAB 98.2 5.6E-06 1.9E-10 81.0 10.4 119 31-216 19-141 (189)
67 3con_A GTPase NRAS; structural 98.2 4.8E-06 1.6E-10 81.3 9.9 118 30-216 19-140 (190)
68 3clv_A RAB5 protein, putative; 98.2 4.1E-06 1.4E-10 81.9 9.4 28 31-58 6-33 (208)
69 2erx_A GTP-binding protein DI- 98.2 4.3E-06 1.5E-10 79.6 9.2 25 33-57 4-28 (172)
70 2fg5_A RAB-22B, RAS-related pr 98.2 2.9E-06 9.9E-11 83.5 8.2 117 32-216 23-142 (192)
71 2p5s_A RAS and EF-hand domain 98.2 4.9E-06 1.7E-10 82.3 9.7 118 31-215 27-146 (199)
72 2e87_A Hypothetical protein PH 98.2 2.8E-05 9.6E-10 84.8 16.3 28 30-57 165-192 (357)
73 1zd9_A ADP-ribosylation factor 98.2 8.4E-06 2.9E-10 79.8 11.0 113 33-217 23-139 (188)
74 3bc1_A RAS-related protein RAB 98.2 5.2E-06 1.8E-10 80.7 9.4 69 131-216 70-141 (195)
75 2efe_B Small GTP-binding prote 98.2 5.9E-06 2E-10 79.6 9.7 118 32-217 12-132 (181)
76 3kkq_A RAS-related protein M-R 98.2 1.1E-05 3.7E-10 78.2 11.5 28 30-57 16-43 (183)
77 2bcg_Y Protein YP2, GTP-bindin 98.1 5.1E-06 1.7E-10 82.5 9.3 26 32-57 8-33 (206)
78 2wji_A Ferrous iron transport 98.1 6.9E-06 2.4E-10 78.8 9.9 25 33-57 4-28 (165)
79 3k53_A Ferrous iron transport 98.1 3.4E-06 1.2E-10 88.4 8.3 27 31-57 2-28 (271)
80 2gf9_A RAS-related protein RAB 98.1 5.5E-06 1.9E-10 81.0 9.3 118 32-216 22-141 (189)
81 3tw8_B RAS-related protein RAB 98.1 3.2E-06 1.1E-10 81.3 7.4 27 31-57 8-34 (181)
82 3dz8_A RAS-related protein RAB 98.1 2.7E-06 9.2E-11 83.5 6.9 119 31-216 22-142 (191)
83 2h57_A ADP-ribosylation factor 98.1 3.6E-06 1.2E-10 82.5 7.7 27 30-56 19-45 (190)
84 2a5j_A RAS-related protein RAB 98.1 5.1E-06 1.8E-10 81.5 8.9 118 32-216 21-140 (191)
85 2f7s_A C25KG, RAS-related prot 98.1 5.3E-06 1.8E-10 83.0 9.0 26 32-57 25-50 (217)
86 2o52_A RAS-related protein RAB 98.1 3.6E-06 1.2E-10 83.6 7.5 118 32-216 25-144 (200)
87 3b1v_A Ferrous iron uptake tra 98.1 8.4E-06 2.9E-10 85.8 10.5 26 32-57 3-28 (272)
88 1lnz_A SPO0B-associated GTP-bi 98.1 3.6E-06 1.2E-10 91.6 7.8 125 32-217 158-289 (342)
89 1z2a_A RAS-related protein RAB 98.1 5.5E-06 1.9E-10 78.6 8.1 25 33-57 6-30 (168)
90 1zj6_A ADP-ribosylation factor 98.1 7.2E-06 2.5E-10 80.0 9.0 113 32-217 16-132 (187)
91 4dcu_A GTP-binding protein ENG 98.1 1.1E-05 3.8E-10 91.1 11.8 125 30-217 193-321 (456)
92 4bas_A ADP-ribosylation factor 98.1 5.7E-06 2E-10 81.2 8.3 29 29-57 14-42 (199)
93 3q85_A GTP-binding protein REM 98.1 7.2E-06 2.5E-10 78.1 8.6 26 32-57 2-27 (169)
94 2nzj_A GTP-binding protein REM 98.1 7.8E-06 2.7E-10 78.2 8.6 26 32-57 4-29 (175)
95 2hup_A RAS-related protein RAB 98.1 1.1E-05 3.9E-10 80.0 10.0 118 32-216 29-148 (201)
96 2h17_A ADP-ribosylation factor 98.1 6.9E-06 2.4E-10 79.8 8.2 115 30-217 19-137 (181)
97 1vg8_A RAS-related protein RAB 98.0 5.4E-06 1.9E-10 82.0 7.2 27 32-58 8-34 (207)
98 3l0i_B RAS-related protein RAB 98.0 1.5E-06 5.2E-11 86.0 3.0 117 32-216 33-152 (199)
99 1ksh_A ARF-like protein 2; sma 98.0 7.1E-06 2.4E-10 79.8 7.8 114 31-217 17-134 (186)
100 3qq5_A Small GTP-binding prote 98.0 8.3E-06 2.8E-10 91.2 9.2 125 30-219 32-157 (423)
101 3t5g_A GTP-binding protein RHE 98.0 8.3E-06 2.8E-10 78.8 8.0 26 32-57 6-31 (181)
102 2wjg_A FEOB, ferrous iron tran 98.0 1.4E-05 4.9E-10 77.6 9.8 28 30-57 5-32 (188)
103 1r2q_A RAS-related protein RAB 98.0 1E-05 3.6E-10 76.7 8.5 25 33-57 7-31 (170)
104 2qag_B Septin-6, protein NEDD5 98.0 8.6E-06 2.9E-10 90.8 8.9 134 31-217 41-191 (427)
105 2hjg_A GTP-binding protein ENG 98.0 7.1E-06 2.4E-10 92.1 8.3 126 31-217 174-301 (436)
106 1x3s_A RAS-related protein RAB 98.0 2.3E-05 7.7E-10 76.5 10.9 28 31-58 14-41 (195)
107 2qag_A Septin-2, protein NEDD5 98.0 1E-05 3.6E-10 88.6 9.4 81 131-217 95-189 (361)
108 2ew1_A RAS-related protein RAB 98.0 9.2E-06 3.2E-10 81.1 8.2 117 32-216 26-145 (201)
109 2yc2_C IFT27, small RAB-relate 98.0 3.6E-06 1.2E-10 83.1 5.2 68 131-216 73-146 (208)
110 2hxs_A RAB-26, RAS-related pro 98.0 5.2E-06 1.8E-10 79.8 6.0 26 32-57 6-31 (178)
111 2fu5_C RAS-related protein RAB 98.0 3.1E-06 1.1E-10 82.0 4.3 70 131-217 57-128 (183)
112 2x77_A ADP-ribosylation factor 98.0 5.9E-06 2E-10 80.7 6.3 26 32-57 22-47 (189)
113 3oes_A GTPase rhebl1; small GT 98.0 5.5E-06 1.9E-10 82.1 6.1 28 30-57 22-49 (201)
114 2gf0_A GTP-binding protein DI- 98.0 1.3E-05 4.3E-10 78.7 8.6 27 31-57 7-33 (199)
115 2b6h_A ADP-ribosylation factor 98.0 1E-05 3.5E-10 79.8 7.9 113 32-217 29-145 (192)
116 2q3h_A RAS homolog gene family 98.0 9.8E-06 3.3E-10 79.9 7.7 119 30-217 18-139 (201)
117 1moz_A ARL1, ADP-ribosylation 98.0 5.7E-06 2E-10 80.0 5.7 26 32-57 18-43 (183)
118 3llu_A RAS-related GTP-binding 98.0 2.4E-05 8.4E-10 77.1 10.4 120 30-217 18-144 (196)
119 2atx_A Small GTP binding prote 98.0 1.4E-05 4.6E-10 78.4 8.4 117 33-218 19-138 (194)
120 1fzq_A ADP-ribosylation factor 98.0 1.7E-05 5.8E-10 77.3 9.0 115 30-217 14-132 (181)
121 3geh_A MNME, tRNA modification 98.0 1.7E-05 5.7E-10 89.7 10.0 24 34-57 226-249 (462)
122 1mh1_A RAC1; GTP-binding, GTPa 98.0 6.8E-06 2.3E-10 79.4 6.0 117 33-218 6-125 (186)
123 1f6b_A SAR1; gtpases, N-termin 97.9 1.5E-05 5E-10 79.1 7.8 115 30-216 23-140 (198)
124 1xzp_A Probable tRNA modificat 97.9 1.4E-05 4.7E-10 90.9 8.5 120 33-217 244-365 (482)
125 2atv_A RERG, RAS-like estrogen 97.9 2.9E-05 9.9E-10 76.4 9.7 27 31-57 27-53 (196)
126 3cpj_B GTP-binding protein YPT 97.9 1.3E-05 4.3E-10 81.0 7.0 26 32-57 13-38 (223)
127 2qag_C Septin-7; cell cycle, c 97.9 3.2E-05 1.1E-09 86.2 10.9 28 34-61 33-60 (418)
128 1m2o_B GTP-binding protein SAR 97.9 2E-05 6.7E-10 77.6 8.1 114 30-216 21-138 (190)
129 2j1l_A RHO-related GTP-binding 97.9 1.5E-05 5E-10 80.1 7.3 116 33-217 35-153 (214)
130 3t1o_A Gliding protein MGLA; G 97.9 1.7E-05 5.9E-10 77.2 7.5 24 32-55 14-37 (198)
131 2gco_A H9, RHO-related GTP-bin 97.9 1.8E-05 6E-10 78.5 7.6 117 33-218 26-145 (201)
132 2j0v_A RAC-like GTP-binding pr 97.9 1.4E-05 4.9E-10 79.5 6.7 117 32-217 9-128 (212)
133 2iwr_A Centaurin gamma 1; ANK 97.9 2.2E-05 7.4E-10 75.6 7.7 25 33-57 8-32 (178)
134 2fv8_A H6, RHO-related GTP-bin 97.9 7.4E-06 2.5E-10 81.6 4.3 116 33-217 26-144 (207)
135 3cbq_A GTP-binding protein REM 97.8 5.6E-05 1.9E-09 74.7 10.1 27 31-57 22-48 (195)
136 3dpu_A RAB family protein; roc 97.8 0.00015 5.1E-09 83.5 14.8 151 5-217 14-165 (535)
137 4a9a_A Ribosome-interacting GT 97.8 2.9E-05 1E-09 85.3 8.3 40 31-70 71-110 (376)
138 3reg_A RHO-like small GTPase; 97.8 2.8E-05 9.6E-10 76.2 7.2 27 31-57 22-48 (194)
139 1mky_A Probable GTP-binding pr 97.8 4.3E-05 1.5E-09 85.8 9.4 27 31-57 179-205 (439)
140 1pui_A ENGB, probable GTP-bind 97.7 6.4E-05 2.2E-09 74.5 8.8 25 33-57 27-51 (210)
141 3o47_A ADP-ribosylation factor 97.7 3.6E-05 1.2E-09 83.1 7.5 111 34-217 167-281 (329)
142 3bwd_D RAC-like GTP-binding pr 97.7 1.1E-05 3.7E-10 77.9 3.0 117 32-217 8-127 (182)
143 4gzl_A RAS-related C3 botulinu 97.7 1.9E-05 6.6E-10 78.5 4.9 120 30-218 28-150 (204)
144 3r7w_A Gtpase1, GTP-binding pr 97.7 8.7E-05 3E-09 79.3 10.2 73 130-216 51-129 (307)
145 1m7b_A RND3/RHOE small GTP-bin 97.7 3.6E-05 1.2E-09 74.9 6.5 26 32-57 7-32 (184)
146 3j2k_7 ERF3, eukaryotic polype 97.7 0.00018 6.3E-09 80.7 12.6 145 31-216 16-169 (439)
147 3izy_P Translation initiation 97.7 9.6E-06 3.3E-10 93.2 1.4 113 32-216 4-118 (537)
148 3gj0_A GTP-binding nuclear pro 97.7 4.9E-05 1.7E-09 76.3 6.5 69 131-217 64-134 (221)
149 3q3j_B RHO-related GTP-binding 97.7 7.1E-05 2.4E-09 75.1 7.6 119 30-217 25-146 (214)
150 3tr5_A RF-3, peptide chain rel 97.6 7E-05 2.4E-09 86.1 8.5 136 32-216 13-148 (528)
151 1gwn_A RHO-related GTP-binding 97.6 5.2E-05 1.8E-09 75.7 6.4 25 33-57 29-53 (205)
152 3c5c_A RAS-like protein 12; GD 97.6 9.9E-05 3.4E-09 72.2 8.3 25 33-57 22-46 (187)
153 3izq_1 HBS1P, elongation facto 97.6 0.00014 4.9E-09 84.9 10.9 147 31-217 166-320 (611)
154 3p26_A Elongation factor 1 alp 97.6 6.2E-05 2.1E-09 85.6 7.5 147 31-217 32-186 (483)
155 3sjy_A Translation initiation 97.6 0.00014 5E-09 80.5 10.3 68 131-217 75-144 (403)
156 3th5_A RAS-related C3 botulinu 96.8 8E-06 2.7E-10 81.0 0.0 68 132-217 79-149 (204)
157 3sop_A Neuronal-specific septi 97.6 0.00011 3.9E-09 77.0 7.9 23 34-56 4-26 (270)
158 3ihw_A Centg3; RAS, centaurin, 97.6 0.0001 3.5E-09 72.0 7.0 28 30-57 18-45 (184)
159 2wkq_A NPH1-1, RAS-related C3 97.5 0.00013 4.6E-09 77.5 7.7 117 31-217 154-274 (332)
160 2zej_A Dardarin, leucine-rich 97.5 0.0001 3.4E-09 71.9 6.1 23 33-55 3-25 (184)
161 3lvq_E ARF-GAP with SH3 domain 97.5 0.0002 6.8E-09 81.4 9.0 112 33-217 323-438 (497)
162 2h5e_A Peptide chain release f 97.5 0.0003 1E-08 80.9 10.4 68 131-217 82-149 (529)
163 1zun_B Sulfate adenylate trans 97.5 0.00057 2E-08 76.5 12.4 68 130-217 103-172 (434)
164 1kk1_A EIF2gamma; initiation o 97.4 0.00057 1.9E-08 75.9 12.1 67 131-217 83-152 (410)
165 3ec1_A YQEH GTPase; atnos1, at 97.4 4.1E-05 1.4E-09 84.1 2.5 23 33-55 163-185 (369)
166 2f9l_A RAB11B, member RAS onco 97.4 0.00031 1.1E-08 69.3 8.6 26 32-57 5-30 (199)
167 2qnr_A Septin-2, protein NEDD5 97.4 0.0004 1.4E-08 74.0 10.0 136 34-217 20-170 (301)
168 1g7s_A Translation initiation 97.4 7.8E-05 2.7E-09 86.8 4.8 131 30-216 3-136 (594)
169 1wxq_A GTP-binding protein; st 97.4 6.9E-05 2.4E-09 83.1 4.1 37 34-71 2-39 (397)
170 1wb1_A Translation elongation 97.4 0.00023 8E-09 80.8 8.4 65 131-216 73-139 (482)
171 2elf_A Protein translation elo 97.4 0.00047 1.6E-08 75.7 10.5 61 132-214 61-125 (370)
172 2c78_A Elongation factor TU-A; 97.4 0.00046 1.6E-08 76.5 10.3 131 31-216 10-142 (405)
173 1puj_A YLQF, conserved hypothe 97.3 0.00051 1.7E-08 72.5 9.2 52 4-57 90-145 (282)
174 4dkx_A RAS-related protein RAB 97.3 0.00035 1.2E-08 70.8 7.6 24 34-57 15-38 (216)
175 1zo1_I IF2, translation initia 97.3 0.00011 3.6E-09 83.8 4.1 113 31-216 3-117 (501)
176 2ohf_A Protein OLA1, GTP-bindi 97.3 0.00031 1.1E-08 77.5 7.7 37 33-70 23-60 (396)
177 3h2y_A GTPase family protein; 97.3 0.00013 4.6E-09 79.9 4.7 41 4-56 144-184 (368)
178 1f60_A Elongation factor EEF1A 97.3 0.00052 1.8E-08 77.4 9.3 145 31-216 6-159 (458)
179 2rdo_7 EF-G, elongation factor 97.3 0.001 3.5E-08 79.0 12.2 134 31-217 9-149 (704)
180 1s0u_A EIF-2-gamma, translatio 97.2 0.0013 4.5E-08 72.9 11.9 25 31-55 7-31 (408)
181 1oix_A RAS-related protein RAB 97.2 0.00059 2E-08 67.0 8.0 26 32-57 29-54 (191)
182 2xex_A Elongation factor G; GT 97.2 0.00031 1.1E-08 83.3 6.9 66 131-217 75-142 (693)
183 3dm5_A SRP54, signal recogniti 97.2 0.001 3.5E-08 74.4 10.6 81 131-226 183-263 (443)
184 1f5n_A Interferon-induced guan 97.2 0.00082 2.8E-08 77.9 9.7 27 30-56 36-62 (592)
185 2g3y_A GTP-binding protein GEM 97.2 0.00073 2.5E-08 68.0 8.1 26 31-56 36-61 (211)
186 1d2e_A Elongation factor TU (E 97.2 0.00087 3E-08 74.1 9.4 67 130-216 65-133 (397)
187 1jny_A EF-1-alpha, elongation 97.2 0.0012 4.1E-08 73.9 10.5 66 131-216 84-158 (435)
188 2ywe_A GTP-binding protein LEP 97.1 0.00071 2.4E-08 78.7 8.7 131 32-217 6-140 (600)
189 2dby_A GTP-binding protein; GD 97.1 0.00091 3.1E-08 73.3 9.0 39 33-71 2-40 (368)
190 1dar_A EF-G, elongation factor 97.1 0.00061 2.1E-08 80.8 8.1 68 130-217 76-144 (691)
191 3cb4_D GTP-binding protein LEP 97.1 0.00068 2.3E-08 78.9 8.1 131 32-217 4-138 (599)
192 1jal_A YCHF protein; nucleotid 97.0 0.00056 1.9E-08 74.7 5.8 37 33-69 3-39 (363)
193 2j37_W Signal recognition part 96.9 0.0038 1.3E-07 71.1 11.9 78 131-224 184-262 (504)
194 3mca_A HBS1, elongation factor 96.9 8.4E-05 2.9E-09 86.6 -2.0 23 33-55 178-200 (592)
195 2cjw_A GTP-binding protein GEM 96.9 0.0015 5.1E-08 64.2 7.1 24 32-55 6-29 (192)
196 2yhs_A FTSY, cell division pro 96.8 0.00094 3.2E-08 75.6 5.9 83 132-227 377-463 (503)
197 1tq4_A IIGP1, interferon-induc 96.8 0.0027 9.2E-08 70.5 9.0 31 32-64 69-99 (413)
198 1ni3_A YCHF GTPase, YCHF GTP-b 96.8 0.0012 4.1E-08 72.9 5.9 40 32-71 20-60 (392)
199 3kl4_A SRP54, signal recogniti 96.8 0.0029 9.8E-08 70.7 9.0 89 130-231 179-267 (433)
200 2dy1_A Elongation factor G; tr 96.7 0.0051 1.7E-07 72.6 11.5 129 32-215 9-139 (665)
201 3avx_A Elongation factor TS, e 96.7 0.0046 1.6E-07 76.2 11.2 67 130-216 358-426 (1289)
202 1n0u_A EF-2, elongation factor 96.6 0.0016 5.4E-08 78.9 6.1 64 131-215 98-163 (842)
203 1r5b_A Eukaryotic peptide chai 96.6 0.0021 7.1E-08 72.7 6.6 66 131-216 121-195 (467)
204 3cnl_A YLQF, putative uncharac 96.6 0.0012 4.1E-08 68.9 4.2 25 33-57 100-124 (262)
205 1vma_A Cell division protein F 96.6 0.00047 1.6E-08 73.7 0.9 89 130-231 186-278 (306)
206 1udx_A The GTP-binding protein 96.5 0.006 2E-07 67.9 9.4 25 32-56 157-181 (416)
207 3e70_C DPA, signal recognition 96.4 0.0055 1.9E-07 66.0 8.2 81 132-227 213-293 (328)
208 2px0_A Flagellar biosynthesis 96.2 0.027 9.3E-07 59.6 12.2 22 34-55 107-128 (296)
209 3c5h_A Glucocorticoid receptor 96.2 0.0023 7.8E-08 66.1 3.6 26 30-55 17-51 (255)
210 3p32_A Probable GTPase RV1496/ 96.2 0.0063 2.2E-07 66.1 7.2 25 31-55 78-102 (355)
211 1rj9_A FTSY, signal recognitio 96.2 0.004 1.4E-07 66.3 5.4 86 132-226 186-271 (304)
212 3q5d_A Atlastin-1; G protein, 96.0 0.005 1.7E-07 69.0 5.2 24 32-55 67-90 (447)
213 2xxa_A Signal recognition part 95.8 0.016 5.4E-07 64.8 8.4 78 131-224 184-262 (433)
214 2v3c_C SRP54, signal recogniti 95.8 0.025 8.5E-07 63.2 10.0 82 129-226 179-262 (432)
215 3r7w_B Gtpase2, GTP-binding pr 95.8 0.051 1.7E-06 58.4 11.7 72 130-217 45-121 (331)
216 1zu4_A FTSY; GTPase, signal re 95.7 0.081 2.8E-06 56.6 13.1 89 130-231 191-283 (320)
217 1yrb_A ATP(GTP)binding protein 95.6 0.0036 1.2E-07 64.3 2.0 24 30-53 12-35 (262)
218 1j8m_F SRP54, signal recogniti 95.4 0.095 3.2E-06 55.5 12.2 83 131-226 181-263 (297)
219 3vqt_A RF-3, peptide chain rel 95.3 0.064 2.2E-06 61.7 11.0 129 35-216 34-166 (548)
220 2ffh_A Protein (FFH); SRP54, s 95.2 0.015 5E-07 64.9 5.3 82 130-226 180-261 (425)
221 2og2_A Putative signal recogni 95.0 0.031 1.1E-06 60.9 6.8 87 132-227 242-328 (359)
222 3j25_A Tetracycline resistance 94.2 0.041 1.4E-06 64.5 6.0 127 35-216 5-133 (638)
223 1ls1_A Signal recognition part 94.1 0.04 1.4E-06 58.2 5.0 87 130-231 180-266 (295)
224 3b9q_A Chloroplast SRP recepto 93.9 0.13 4.4E-06 54.5 8.6 23 33-55 100-123 (302)
225 4fn5_A EF-G 1, elongation fact 93.7 0.072 2.5E-06 63.2 6.7 130 35-216 16-151 (709)
226 3tif_A Uncharacterized ABC tra 93.5 0.034 1.2E-06 56.8 3.1 28 35-64 34-61 (235)
227 1mv5_A LMRA, multidrug resista 93.5 0.043 1.5E-06 56.3 3.8 29 35-65 31-59 (243)
228 4g1u_C Hemin import ATP-bindin 93.4 0.043 1.5E-06 57.2 3.6 29 35-65 40-68 (266)
229 2pcj_A ABC transporter, lipopr 93.3 0.035 1.2E-06 56.2 2.8 28 35-64 33-60 (224)
230 1sgw_A Putative ABC transporte 93.3 0.04 1.4E-06 55.5 3.1 29 35-65 38-66 (214)
231 1g6h_A High-affinity branched- 93.3 0.04 1.4E-06 57.0 3.1 29 35-65 36-64 (257)
232 2pze_A Cystic fibrosis transme 93.2 0.041 1.4E-06 55.9 3.1 30 35-66 37-66 (229)
233 1odf_A YGR205W, hypothetical 3 93.0 0.071 2.4E-06 56.2 4.7 54 1-55 1-54 (290)
234 1b0u_A Histidine permease; ABC 93.0 0.045 1.6E-06 56.8 3.1 29 35-65 35-63 (262)
235 2ff7_A Alpha-hemolysin translo 92.9 0.047 1.6E-06 56.2 3.1 28 35-64 38-65 (247)
236 2onk_A Molybdate/tungstate ABC 92.9 0.047 1.6E-06 56.0 3.1 30 34-65 26-55 (240)
237 1ji0_A ABC transporter; ATP bi 92.9 0.048 1.6E-06 55.8 3.1 29 35-65 35-63 (240)
238 2cbz_A Multidrug resistance-as 92.9 0.041 1.4E-06 56.3 2.6 29 35-65 34-62 (237)
239 3gfo_A Cobalt import ATP-bindi 92.9 0.046 1.6E-06 57.3 3.1 29 35-65 37-65 (275)
240 2gza_A Type IV secretion syste 92.9 0.049 1.7E-06 59.2 3.3 30 35-66 178-207 (361)
241 2pt7_A CAG-ALFA; ATPase, prote 92.9 0.046 1.6E-06 58.7 3.0 30 35-66 174-203 (330)
242 2ixe_A Antigen peptide transpo 92.7 0.052 1.8E-06 56.6 3.1 29 35-65 48-76 (271)
243 2olj_A Amino acid ABC transpor 92.7 0.053 1.8E-06 56.4 3.1 29 35-65 53-81 (263)
244 2d2e_A SUFC protein; ABC-ATPas 92.7 0.05 1.7E-06 56.0 2.9 30 35-64 32-61 (250)
245 2nq2_C Hypothetical ABC transp 92.7 0.053 1.8E-06 56.0 3.0 30 35-66 34-63 (253)
246 1vpl_A ABC transporter, ATP-bi 92.6 0.055 1.9E-06 56.0 3.1 29 35-65 44-72 (256)
247 2yz2_A Putative ABC transporte 92.6 0.057 1.9E-06 56.2 3.1 28 35-64 36-63 (266)
248 2ihy_A ABC transporter, ATP-bi 92.5 0.057 1.9E-06 56.6 3.1 29 35-65 50-78 (279)
249 2www_A Methylmalonic aciduria 92.2 0.056 1.9E-06 58.5 2.6 26 30-55 72-97 (349)
250 2qi9_C Vitamin B12 import ATP- 92.2 0.067 2.3E-06 55.1 3.0 22 35-56 29-50 (249)
251 2zu0_C Probable ATP-dependent 92.0 0.068 2.3E-06 55.6 2.8 30 35-64 49-78 (267)
252 2oap_1 GSPE-2, type II secreti 92.0 0.067 2.3E-06 61.0 3.0 30 35-66 263-292 (511)
253 3kta_A Chromosome segregation 91.6 0.066 2.3E-06 51.5 2.2 23 33-55 27-49 (182)
254 1znw_A Guanylate kinase, GMP k 91.6 0.071 2.4E-06 52.8 2.4 21 35-55 23-43 (207)
255 3nh6_A ATP-binding cassette SU 91.5 0.064 2.2E-06 57.1 2.1 28 35-64 83-110 (306)
256 1lvg_A Guanylate kinase, GMP k 91.4 0.077 2.6E-06 52.3 2.4 22 34-55 6-27 (198)
257 2bbs_A Cystic fibrosis transme 91.4 0.078 2.7E-06 56.0 2.5 29 35-65 67-95 (290)
258 4ido_A Atlastin-1; GTPase, GTP 91.2 0.22 7.5E-06 55.7 6.0 20 34-53 69-88 (457)
259 1kgd_A CASK, peripheral plasma 91.1 0.087 3E-06 51.0 2.4 22 34-55 7-28 (180)
260 1htw_A HI0065; nucleotide-bind 91.1 0.096 3.3E-06 50.1 2.6 28 35-65 36-63 (158)
261 1s96_A Guanylate kinase, GMP k 91.0 0.088 3E-06 53.1 2.4 21 35-55 19-39 (219)
262 3tr0_A Guanylate kinase, GMP k 90.8 0.094 3.2E-06 51.2 2.4 22 34-55 9-30 (205)
263 3ney_A 55 kDa erythrocyte memb 90.8 0.11 3.7E-06 51.7 2.8 22 34-55 21-42 (197)
264 2wsm_A Hydrogenase expression/ 90.7 0.096 3.3E-06 51.8 2.4 25 31-55 29-53 (221)
265 2hf9_A Probable hydrogenase ni 90.7 0.12 4E-06 51.4 3.0 27 31-57 37-63 (226)
266 3c8u_A Fructokinase; YP_612366 90.6 0.094 3.2E-06 51.9 2.2 22 34-55 24-45 (208)
267 1ye8_A Protein THEP1, hypothet 90.6 0.11 3.7E-06 50.6 2.6 22 34-55 2-23 (178)
268 1zp6_A Hypothetical protein AT 90.6 0.12 4.3E-06 49.8 3.0 21 35-55 12-32 (191)
269 3a00_A Guanylate kinase, GMP k 90.5 0.1 3.6E-06 50.6 2.4 21 35-55 4-24 (186)
270 2rcn_A Probable GTPase ENGC; Y 90.5 0.16 5.5E-06 55.1 4.1 23 34-56 217-239 (358)
271 1z47_A CYSA, putative ABC-tran 90.4 0.13 4.3E-06 56.0 3.1 28 35-64 44-71 (355)
272 2it1_A 362AA long hypothetical 90.3 0.13 4.4E-06 56.0 3.1 28 35-64 32-59 (362)
273 2ghi_A Transport protein; mult 90.1 0.15 5E-06 52.9 3.2 22 35-56 49-70 (260)
274 1g29_1 MALK, maltose transport 90.1 0.14 4.7E-06 56.0 3.1 28 35-64 32-59 (372)
275 2yyz_A Sugar ABC transporter, 90.1 0.14 4.7E-06 55.7 3.1 27 35-63 32-58 (359)
276 3fvq_A Fe(3+) IONS import ATP- 90.1 0.13 4.4E-06 55.9 2.9 28 35-64 33-60 (359)
277 1f2t_A RAD50 ABC-ATPase; DNA d 90.1 0.14 4.7E-06 48.3 2.7 21 33-53 24-44 (149)
278 1z6g_A Guanylate kinase; struc 90.1 0.12 4E-06 51.9 2.4 23 35-59 26-48 (218)
279 3tau_A Guanylate kinase, GMP k 90.1 0.15 5.2E-06 50.5 3.2 22 34-55 10-31 (208)
280 3rlf_A Maltose/maltodextrin im 89.9 0.14 4.9E-06 56.0 3.1 28 35-64 32-59 (381)
281 1u0l_A Probable GTPase ENGC; p 89.9 0.17 5.8E-06 53.4 3.6 23 34-56 171-193 (301)
282 1v43_A Sugar-binding transport 89.7 0.15 5.2E-06 55.6 3.1 27 35-63 40-66 (372)
283 3tui_C Methionine import ATP-b 89.6 0.16 5.4E-06 55.4 3.1 28 35-64 57-84 (366)
284 3d31_A Sulfate/molybdate ABC t 89.5 0.12 4.3E-06 55.8 2.1 28 35-64 29-56 (348)
285 1np6_A Molybdopterin-guanine d 89.4 0.17 5.8E-06 49.2 2.9 24 32-55 6-29 (174)
286 2pjz_A Hypothetical protein ST 89.2 0.19 6.4E-06 52.2 3.2 23 34-56 32-54 (263)
287 3asz_A Uridine kinase; cytidin 89.2 0.14 4.9E-06 50.4 2.2 22 34-55 8-29 (211)
288 1ex7_A Guanylate kinase; subst 89.2 0.15 5.2E-06 50.1 2.3 21 35-55 4-24 (186)
289 3gd7_A Fusion complex of cysti 88.8 0.16 5.5E-06 55.9 2.4 26 35-63 50-75 (390)
290 1oxx_K GLCV, glucose, ABC tran 88.8 0.12 4.2E-06 56.0 1.5 28 35-64 34-61 (353)
291 3b85_A Phosphate starvation-in 88.7 0.15 5.1E-06 51.0 1.9 29 35-66 25-53 (208)
292 1t9h_A YLOQ, probable GTPase E 88.6 0.1 3.4E-06 55.6 0.6 23 34-56 175-197 (307)
293 2j41_A Guanylate kinase; GMP, 88.5 0.19 6.6E-06 49.0 2.5 23 34-56 8-30 (207)
294 4gp7_A Metallophosphoesterase; 88.2 0.25 8.4E-06 47.4 3.0 20 35-54 12-31 (171)
295 1kag_A SKI, shikimate kinase I 88.1 0.2 6.9E-06 47.4 2.4 22 34-55 6-27 (173)
296 2f1r_A Molybdopterin-guanine d 88.1 0.12 4.2E-06 50.0 0.8 23 33-55 3-25 (171)
297 2qor_A Guanylate kinase; phosp 88.1 0.17 5.9E-06 49.8 1.9 23 33-55 13-35 (204)
298 2bbw_A Adenylate kinase 4, AK4 88.1 0.21 7E-06 50.8 2.5 25 33-57 28-55 (246)
299 4a74_A DNA repair and recombin 87.9 0.28 9.6E-06 48.5 3.4 29 35-63 28-56 (231)
300 2eyu_A Twitching motility prot 87.9 0.2 6.9E-06 51.8 2.4 21 35-55 28-48 (261)
301 2yv5_A YJEQ protein; hydrolase 87.5 0.34 1.2E-05 51.2 3.9 22 34-56 167-188 (302)
302 4eun_A Thermoresistant glucoki 87.3 0.24 8.2E-06 48.5 2.4 22 34-55 31-52 (200)
303 3lnc_A Guanylate kinase, GMP k 87.2 0.19 6.7E-06 50.4 1.7 22 34-55 29-51 (231)
304 2v9p_A Replication protein E1; 87.1 0.24 8.1E-06 52.6 2.4 22 34-55 128-149 (305)
305 3aez_A Pantothenate kinase; tr 87.0 0.24 8.2E-06 52.7 2.4 26 30-55 87-113 (312)
306 2bdt_A BH3686; alpha-beta prot 86.9 0.26 8.9E-06 47.6 2.4 20 35-54 5-24 (189)
307 1yqt_A RNAse L inhibitor; ATP- 86.9 0.37 1.3E-05 55.2 4.0 31 34-66 314-344 (538)
308 3qf7_A RAD50; ABC-ATPase, ATPa 86.9 0.3 1E-05 53.1 3.1 25 30-54 21-45 (365)
309 3ozx_A RNAse L inhibitor; ATP 86.6 0.36 1.2E-05 55.3 3.7 30 35-66 297-326 (538)
310 1knq_A Gluconate kinase; ALFA/ 86.5 0.29 9.8E-06 46.6 2.4 22 34-55 10-31 (175)
311 2vp4_A Deoxynucleoside kinase; 86.5 0.28 9.5E-06 49.4 2.4 21 35-55 23-43 (230)
312 2qm8_A GTPase/ATPase; G protei 86.5 0.27 9.1E-06 52.9 2.4 24 32-55 55-78 (337)
313 3b5x_A Lipid A export ATP-bind 86.3 0.35 1.2E-05 55.9 3.4 28 35-64 372-399 (582)
314 4e22_A Cytidylate kinase; P-lo 86.2 0.29 9.8E-06 50.1 2.4 32 33-66 28-62 (252)
315 2i3b_A HCR-ntpase, human cance 86.2 0.3 1E-05 48.0 2.4 27 34-63 3-29 (189)
316 3bk7_A ABC transporter ATP-bin 86.1 0.43 1.5E-05 55.5 4.0 31 34-66 384-414 (607)
317 3b60_A Lipid A export ATP-bind 86.0 0.32 1.1E-05 56.3 2.8 28 35-64 372-399 (582)
318 3qks_A DNA double-strand break 86.0 0.38 1.3E-05 47.6 3.1 23 31-53 22-44 (203)
319 3euj_A Chromosome partition pr 85.8 0.3 1E-05 55.1 2.5 30 34-65 31-60 (483)
320 3thx_A DNA mismatch repair pro 85.8 3 0.0001 50.8 11.3 18 35-52 665-682 (934)
321 2yl4_A ATP-binding cassette SU 85.7 0.3 1E-05 56.5 2.5 28 35-64 373-400 (595)
322 1yqt_A RNAse L inhibitor; ATP- 85.7 0.44 1.5E-05 54.6 3.8 28 35-64 50-77 (538)
323 4a82_A Cystic fibrosis transme 85.6 0.29 1E-05 56.5 2.3 28 35-64 370-397 (578)
324 1lw7_A Transcriptional regulat 85.6 0.3 1E-05 52.9 2.2 23 34-56 172-194 (365)
325 2jeo_A Uridine-cytidine kinase 85.4 0.34 1.1E-05 49.2 2.4 26 30-55 22-48 (245)
326 1rz3_A Hypothetical protein rb 85.4 0.69 2.4E-05 45.3 4.6 22 34-55 24-45 (201)
327 3jvv_A Twitching mobility prot 85.4 0.33 1.1E-05 52.7 2.4 22 34-55 125-146 (356)
328 3qf4_A ABC transporter, ATP-bi 85.4 0.33 1.1E-05 56.2 2.6 28 35-64 372-399 (587)
329 3qf4_B Uncharacterized ABC tra 85.2 0.34 1.2E-05 56.2 2.6 29 34-64 383-411 (598)
330 1xjc_A MOBB protein homolog; s 85.1 0.52 1.8E-05 45.6 3.4 24 32-55 4-27 (169)
331 3uie_A Adenylyl-sulfate kinase 85.0 0.37 1.3E-05 47.1 2.4 22 34-55 27-48 (200)
332 2npi_A Protein CLP1; CLP1-PCF1 84.9 0.34 1.2E-05 54.4 2.3 30 32-63 138-167 (460)
333 3kb2_A SPBC2 prophage-derived 84.8 0.47 1.6E-05 44.5 2.9 22 33-54 2-23 (173)
334 3qkt_A DNA double-strand break 84.5 0.42 1.4E-05 51.2 2.7 22 33-54 24-45 (339)
335 3ozx_A RNAse L inhibitor; ATP 84.3 0.62 2.1E-05 53.3 4.2 29 35-65 28-56 (538)
336 1sq5_A Pantothenate kinase; P- 84.2 0.37 1.3E-05 50.9 2.2 22 34-55 82-103 (308)
337 3j16_B RLI1P; ribosome recycli 83.8 0.67 2.3E-05 53.9 4.2 29 35-65 106-134 (608)
338 1cke_A CK, MSSA, protein (cyti 83.8 0.49 1.7E-05 46.9 2.7 23 33-55 6-28 (227)
339 3bk7_A ABC transporter ATP-bin 83.8 0.59 2E-05 54.3 3.7 28 35-64 120-147 (607)
340 1p9r_A General secretion pathw 83.6 0.37 1.3E-05 53.4 1.9 21 35-55 170-190 (418)
341 3ec2_A DNA replication protein 83.6 0.73 2.5E-05 44.0 3.8 41 12-55 21-61 (180)
342 2qt1_A Nicotinamide riboside k 83.6 0.56 1.9E-05 45.9 3.0 32 24-55 12-44 (207)
343 1iy2_A ATP-dependent metallopr 83.5 1.3 4.3E-05 45.7 5.8 21 35-55 76-96 (278)
344 3lw7_A Adenylate kinase relate 83.5 0.63 2.2E-05 43.4 3.2 20 33-52 2-21 (179)
345 2if2_A Dephospho-COA kinase; a 83.4 0.44 1.5E-05 46.5 2.2 21 34-54 3-23 (204)
346 1jjv_A Dephospho-COA kinase; P 83.4 0.59 2E-05 45.7 3.1 21 34-54 4-24 (206)
347 1wb9_A DNA mismatch repair pro 83.1 2.7 9.3E-05 50.3 9.2 24 34-57 609-632 (800)
348 3thx_B DNA mismatch repair pro 82.7 1.8 6.1E-05 52.7 7.5 23 34-56 675-697 (918)
349 2o5v_A DNA replication and rep 82.7 0.5 1.7E-05 51.3 2.4 26 30-55 24-49 (359)
350 2ewv_A Twitching motility prot 82.6 0.5 1.7E-05 51.5 2.4 21 35-55 139-159 (372)
351 1e69_A Chromosome segregation 82.4 0.51 1.7E-05 50.1 2.3 23 33-55 25-47 (322)
352 1nij_A Hypothetical protein YJ 82.4 0.42 1.4E-05 50.8 1.6 25 32-56 4-28 (318)
353 3t61_A Gluconokinase; PSI-biol 82.2 0.56 1.9E-05 45.7 2.4 22 33-54 19-40 (202)
354 3auy_A DNA double-strand break 82.2 0.58 2E-05 50.7 2.7 22 32-53 25-46 (371)
355 2kjq_A DNAA-related protein; s 82.2 0.46 1.6E-05 44.6 1.7 25 31-55 35-59 (149)
356 2p67_A LAO/AO transport system 81.9 0.54 1.9E-05 50.4 2.3 25 31-55 55-79 (341)
357 2ehv_A Hypothetical protein PH 81.9 0.58 2E-05 46.8 2.4 20 35-54 33-52 (251)
358 1ixz_A ATP-dependent metallopr 81.8 1 3.6E-05 45.5 4.3 21 35-55 52-72 (254)
359 2x8a_A Nuclear valosin-contain 81.7 1.1 3.7E-05 46.5 4.4 33 19-55 34-67 (274)
360 3j16_B RLI1P; ribosome recycli 81.6 0.8 2.7E-05 53.2 3.7 27 35-63 381-407 (608)
361 2jaq_A Deoxyguanosine kinase; 81.4 0.83 2.8E-05 44.1 3.3 21 34-54 2-22 (205)
362 1w1w_A Structural maintenance 81.4 0.59 2E-05 51.7 2.4 23 34-56 28-50 (430)
363 3tqc_A Pantothenate kinase; bi 81.1 0.62 2.1E-05 49.8 2.4 22 34-55 94-115 (321)
364 3iij_A Coilin-interacting nucl 81.0 0.61 2.1E-05 44.5 2.1 22 32-53 11-32 (180)
365 4aby_A DNA repair protein RECN 80.8 0.26 8.9E-06 54.0 -0.7 27 30-56 58-84 (415)
366 3cm0_A Adenylate kinase; ATP-b 80.5 0.66 2.3E-05 44.3 2.2 20 34-53 6-25 (186)
367 1ly1_A Polynucleotide kinase; 80.1 0.9 3.1E-05 42.9 3.0 21 34-54 4-24 (181)
368 1kht_A Adenylate kinase; phosp 80.0 0.9 3.1E-05 43.3 3.0 21 34-54 5-25 (192)
369 1qhl_A Protein (cell division 79.7 0.28 9.5E-06 49.8 -0.9 27 35-63 30-56 (227)
370 2iw3_A Elongation factor 3A; a 79.6 0.61 2.1E-05 57.0 1.9 31 34-66 701-731 (986)
371 3vaa_A Shikimate kinase, SK; s 79.6 0.94 3.2E-05 44.2 3.0 21 34-54 27-47 (199)
372 1qhx_A CPT, protein (chloramph 79.4 0.98 3.4E-05 42.7 3.0 22 34-55 5-26 (178)
373 3ake_A Cytidylate kinase; CMP 79.3 0.96 3.3E-05 43.9 2.9 22 33-54 3-24 (208)
374 1nks_A Adenylate kinase; therm 79.2 0.92 3.2E-05 43.3 2.7 21 34-54 3-23 (194)
375 3szr_A Interferon-induced GTP- 79.1 15 0.0005 42.5 13.4 56 693-749 538-599 (608)
376 2pez_A Bifunctional 3'-phospho 79.1 0.84 2.9E-05 43.5 2.4 22 34-55 7-28 (179)
377 1lv7_A FTSH; alpha/beta domain 78.8 1 3.5E-05 45.6 3.1 22 34-55 47-68 (257)
378 2v54_A DTMP kinase, thymidylat 78.5 1.1 3.6E-05 43.5 3.0 22 34-55 6-27 (204)
379 1gvn_B Zeta; postsegregational 78.1 2.8 9.5E-05 43.7 6.2 45 8-54 10-55 (287)
380 2rhm_A Putative kinase; P-loop 77.7 1.1 3.7E-05 42.9 2.8 21 34-54 7-27 (193)
381 1y63_A LMAJ004144AAA protein; 77.7 1.3 4.5E-05 42.6 3.3 22 33-54 11-32 (184)
382 2z0h_A DTMP kinase, thymidylat 77.6 1.2 4.1E-05 42.8 3.0 20 35-54 3-22 (197)
383 2plr_A DTMP kinase, probable t 77.5 1.2 4E-05 43.3 3.0 21 34-54 6-26 (213)
384 3trf_A Shikimate kinase, SK; a 77.4 1.4 4.6E-05 42.1 3.3 22 32-53 5-26 (185)
385 1via_A Shikimate kinase; struc 77.4 1.2 4.2E-05 42.2 3.0 22 33-54 5-26 (175)
386 1gtv_A TMK, thymidylate kinase 77.3 0.6 2.1E-05 45.6 0.8 22 34-55 2-23 (214)
387 4f4c_A Multidrug resistance pr 76.6 1.1 3.8E-05 56.8 3.0 29 34-64 446-474 (1321)
388 3g5u_A MCG1178, multidrug resi 76.6 1.1 3.9E-05 56.6 3.1 29 35-65 419-447 (1284)
389 2chg_A Replication factor C sm 76.5 2.7 9.2E-05 40.4 5.2 24 32-55 38-61 (226)
390 2w0m_A SSO2452; RECA, SSPF, un 76.5 1.1 3.7E-05 44.0 2.4 21 35-55 26-46 (235)
391 2yvu_A Probable adenylyl-sulfa 76.0 1.4 4.8E-05 42.2 3.0 22 34-55 15-36 (186)
392 2iyv_A Shikimate kinase, SK; t 75.6 1.4 4.9E-05 42.0 2.9 25 33-57 3-30 (184)
393 1nn5_A Similar to deoxythymidy 75.6 1.3 4.6E-05 43.1 2.8 21 34-54 11-31 (215)
394 1jbk_A CLPB protein; beta barr 75.6 2.6 8.9E-05 39.4 4.8 23 33-55 44-66 (195)
395 3fb4_A Adenylate kinase; psych 75.3 1.6 5.3E-05 42.9 3.2 20 34-53 2-21 (216)
396 2c95_A Adenylate kinase 1; tra 75.1 1.6 5.3E-05 41.9 3.1 21 33-53 10-30 (196)
397 2pbr_A DTMP kinase, thymidylat 74.9 1.5 5.3E-05 41.7 3.0 21 34-54 2-22 (195)
398 2wwf_A Thymidilate kinase, put 74.7 1.5 5E-05 42.8 2.8 21 34-54 12-32 (212)
399 1e6c_A Shikimate kinase; phosp 74.6 1.6 5.6E-05 40.9 3.0 21 33-53 3-23 (173)
400 1vht_A Dephospho-COA kinase; s 74.6 1.5 5.2E-05 43.1 2.9 21 34-54 6-26 (218)
401 3dl0_A Adenylate kinase; phosp 74.3 1.7 5.9E-05 42.6 3.2 20 34-53 2-21 (216)
402 3syl_A Protein CBBX; photosynt 73.9 4.3 0.00015 41.9 6.3 36 20-55 55-90 (309)
403 2pt5_A Shikimate kinase, SK; a 73.9 1.7 5.9E-05 40.6 3.0 21 34-54 2-22 (168)
404 4f4c_A Multidrug resistance pr 73.8 1.3 4.5E-05 56.1 2.7 27 35-63 1108-1134(1321)
405 1cr0_A DNA primase/helicase; R 73.7 1.3 4.4E-05 46.1 2.2 21 35-55 38-58 (296)
406 1zuh_A Shikimate kinase; alpha 73.6 1.8 6.3E-05 40.5 3.1 26 32-57 7-35 (168)
407 2w2x_D 1-phosphatidylinositol- 73.5 0.54 1.8E-05 42.6 -0.7 95 528-629 12-115 (124)
408 3n70_A Transport activator; si 73.3 4.5 0.00015 37.2 5.6 21 35-55 27-47 (145)
409 1tev_A UMP-CMP kinase; ploop, 73.3 1.8 6.1E-05 41.3 3.0 20 34-53 5-24 (196)
410 3nwj_A ATSK2; P loop, shikimat 72.9 1.5 5.2E-05 44.9 2.4 22 33-54 49-70 (250)
411 1fnn_A CDC6P, cell division co 72.3 2.5 8.4E-05 45.1 4.1 24 32-55 44-67 (389)
412 1qf9_A UMP/CMP kinase, protein 72.3 1.8 6.2E-05 41.1 2.8 20 34-53 8-27 (194)
413 3czq_A Putative polyphosphate 72.3 4.2 0.00014 42.9 5.7 58 7-70 66-124 (304)
414 1uf9_A TT1252 protein; P-loop, 72.3 1.8 6.2E-05 41.7 2.7 23 33-55 9-31 (203)
415 2bwj_A Adenylate kinase 5; pho 72.1 2 7E-05 41.2 3.1 22 33-54 13-34 (199)
416 1m7g_A Adenylylsulfate kinase; 72.0 1.7 5.6E-05 42.8 2.4 22 34-55 27-48 (211)
417 2ce7_A Cell division protein F 71.7 3.9 0.00013 46.0 5.6 46 7-55 25-72 (476)
418 2vli_A Antibiotic resistance p 71.7 1.5 5.1E-05 41.6 2.0 20 34-53 7-26 (183)
419 1sxj_E Activator 1 40 kDa subu 71.4 1.7 5.7E-05 46.1 2.4 25 31-55 35-59 (354)
420 1in4_A RUVB, holliday junction 71.3 1.8 6.3E-05 45.9 2.8 24 32-55 51-74 (334)
421 1ukz_A Uridylate kinase; trans 71.1 2.1 7.3E-05 41.4 3.0 21 33-53 16-36 (203)
422 3r20_A Cytidylate kinase; stru 71.0 1.6 5.4E-05 44.4 2.0 20 34-53 11-30 (233)
423 1svm_A Large T antigen; AAA+ f 71.0 1.7 5.8E-05 47.4 2.4 22 34-55 171-192 (377)
424 1zd8_A GTP:AMP phosphotransfer 70.6 2 7E-05 42.6 2.7 22 33-54 8-29 (227)
425 2cdn_A Adenylate kinase; phosp 70.5 2.2 7.7E-05 41.3 3.0 21 34-54 22-42 (201)
426 3g5u_A MCG1178, multidrug resi 70.2 2.1 7E-05 54.2 3.2 28 34-63 1061-1088(1284)
427 2obl_A ESCN; ATPase, hydrolase 70.1 1.8 6.2E-05 46.6 2.4 23 34-56 73-95 (347)
428 2ga8_A Hypothetical 39.9 kDa p 69.9 4.2 0.00015 43.9 5.2 25 31-55 23-47 (359)
429 2dpy_A FLII, flagellum-specifi 69.9 1.8 6.2E-05 48.1 2.4 23 34-56 159-181 (438)
430 1e4v_A Adenylate kinase; trans 69.9 2.3 8E-05 41.7 3.0 21 34-54 2-22 (214)
431 1zak_A Adenylate kinase; ATP:A 69.8 2.2 7.5E-05 42.2 2.8 21 33-53 6-26 (222)
432 2p5t_B PEZT; postsegregational 69.7 4.7 0.00016 40.8 5.3 26 30-55 29-55 (253)
433 3a4m_A L-seryl-tRNA(SEC) kinas 69.4 2.3 8E-05 43.4 2.9 22 33-54 5-26 (260)
434 1n0w_A DNA repair protein RAD5 69.0 2.1 7E-05 42.5 2.4 26 35-60 27-52 (243)
435 3tmk_A Thymidylate kinase; pho 68.8 1.5 5.2E-05 43.9 1.3 33 34-69 7-39 (216)
436 1njg_A DNA polymerase III subu 68.8 6.2 0.00021 38.1 5.9 21 34-54 47-67 (250)
437 2cvh_A DNA repair and recombin 68.7 2.1 7.3E-05 41.7 2.4 21 34-54 22-42 (220)
438 2r62_A Cell division protease 67.8 4.3 0.00015 41.1 4.6 46 6-54 19-66 (268)
439 2xb4_A Adenylate kinase; ATP-b 67.8 2.7 9.3E-05 41.7 3.0 21 34-54 2-22 (223)
440 1q3t_A Cytidylate kinase; nucl 67.8 2.3 7.8E-05 42.6 2.4 23 32-54 16-38 (236)
441 4eaq_A DTMP kinase, thymidylat 67.7 2.7 9.3E-05 42.2 3.0 22 34-55 28-49 (229)
442 2p65_A Hypothetical protein PF 67.4 4 0.00014 38.1 3.9 24 32-55 43-66 (187)
443 1sxj_C Activator 1 40 kDa subu 67.2 2.5 8.5E-05 44.8 2.7 25 31-55 45-69 (340)
444 1aky_A Adenylate kinase; ATP:A 66.9 2.9 0.0001 41.2 3.0 22 33-54 5-26 (220)
445 1d2n_A N-ethylmaleimide-sensit 66.8 7.1 0.00024 39.7 6.0 47 5-54 40-86 (272)
446 4tmk_A Protein (thymidylate ki 66.7 1.5 5.2E-05 43.8 0.8 22 34-55 5-26 (213)
447 2qen_A Walker-type ATPase; unk 66.5 5.9 0.0002 41.2 5.5 23 33-55 32-54 (350)
448 2ius_A DNA translocase FTSK; n 65.9 2.8 9.6E-05 47.6 2.9 23 32-54 167-189 (512)
449 2iw3_A Elongation factor 3A; a 65.6 2.6 8.7E-05 51.6 2.6 20 35-54 464-483 (986)
450 2ze6_A Isopentenyl transferase 65.3 3.2 0.00011 42.3 3.0 21 34-54 3-23 (253)
451 3cr8_A Sulfate adenylyltranfer 65.0 1.8 6.3E-05 49.6 1.2 21 35-55 372-392 (552)
452 1wi1_A Calcium-dependent activ 65.0 0.8 2.7E-05 42.1 -1.5 96 528-632 8-109 (126)
453 2o8b_B DNA mismatch repair pro 64.8 12 0.00042 46.0 8.4 21 34-55 791-811 (1022)
454 1nlf_A Regulatory protein REPA 64.5 2.6 9E-05 43.3 2.2 20 35-54 33-52 (279)
455 3hjn_A DTMP kinase, thymidylat 64.5 3.7 0.00013 40.2 3.1 20 35-54 3-22 (197)
456 1uj2_A Uridine-cytidine kinase 64.0 3.5 0.00012 41.7 3.0 21 34-54 24-44 (252)
457 2qz4_A Paraplegin; AAA+, SPG7, 63.9 7.5 0.00026 38.9 5.4 22 33-54 40-61 (262)
458 4ad8_A DNA repair protein RECN 63.8 1.4 4.7E-05 50.1 -0.2 23 33-55 61-83 (517)
459 2grj_A Dephospho-COA kinase; T 63.8 3.6 0.00012 40.2 2.9 23 32-54 12-34 (192)
460 3tlx_A Adenylate kinase 2; str 63.8 3.8 0.00013 41.3 3.2 21 33-53 30-50 (243)
461 3h4m_A Proteasome-activating n 63.7 7.2 0.00025 39.7 5.4 34 19-55 41-74 (285)
462 1fgy_A GRP1; PH domain, signal 63.5 0.68 2.3E-05 41.4 -2.3 50 529-580 6-55 (127)
463 2dhr_A FTSH; AAA+ protein, hex 63.4 4.3 0.00015 45.9 3.8 21 35-55 67-87 (499)
464 3be4_A Adenylate kinase; malar 63.3 3.5 0.00012 40.6 2.7 21 33-53 6-26 (217)
465 2w58_A DNAI, primosome compone 63.2 11 0.00036 36.3 6.2 23 33-55 55-77 (202)
466 1ak2_A Adenylate kinase isoenz 63.2 3.8 0.00013 40.9 3.0 22 33-54 17-38 (233)
467 3bos_A Putative DNA replicatio 63.0 4.3 0.00015 39.8 3.3 24 32-55 52-75 (242)
468 2f6r_A COA synthase, bifunctio 63.0 3.5 0.00012 42.8 2.7 20 34-53 77-96 (281)
469 1ltq_A Polynucleotide kinase; 62.3 3.9 0.00013 42.3 3.0 21 34-54 4-24 (301)
470 3ux8_A Excinuclease ABC, A sub 61.9 3 0.0001 48.9 2.2 19 35-53 351-369 (670)
471 2fna_A Conserved hypothetical 61.9 4.4 0.00015 42.3 3.4 22 33-54 31-52 (357)
472 3cf0_A Transitional endoplasmi 61.9 6.6 0.00023 40.8 4.7 32 20-55 40-72 (301)
473 3co5_A Putative two-component 61.8 7.1 0.00024 35.7 4.4 21 35-55 30-50 (143)
474 3exa_A TRNA delta(2)-isopenten 60.9 5.2 0.00018 42.5 3.6 37 33-69 4-50 (322)
475 1p5z_B DCK, deoxycytidine kina 60.3 3.6 0.00012 41.8 2.3 24 32-55 24-47 (263)
476 1v88_A Oxysterol binding prote 60.1 1.3 4.6E-05 40.6 -1.0 52 526-580 6-57 (130)
477 3m6a_A ATP-dependent protease 59.8 5.9 0.0002 45.2 4.1 27 29-55 105-131 (543)
478 1bg2_A Kinesin; motor protein, 59.0 77 0.0026 33.5 12.4 53 92-144 173-238 (325)
479 2ocp_A DGK, deoxyguanosine kin 58.6 4.7 0.00016 40.3 2.7 22 34-55 4-25 (241)
480 2iut_A DNA translocase FTSK; n 58.1 4.8 0.00017 46.2 3.0 23 32-54 214-236 (574)
481 4ag6_A VIRB4 ATPase, type IV s 58.0 4.2 0.00014 44.0 2.4 26 31-56 34-59 (392)
482 2ys3_A UNC-112-related protein 57.6 4.6 0.00016 37.5 2.2 83 545-632 27-111 (137)
483 1v89_A Hypothetical protein KI 57.6 1.1 3.8E-05 39.3 -2.0 100 528-629 8-108 (118)
484 1tue_A Replication protein E1; 57.1 10 0.00035 37.8 4.8 37 10-54 41-80 (212)
485 1a7j_A Phosphoribulokinase; tr 56.5 3.7 0.00013 42.9 1.6 22 33-54 6-27 (290)
486 3zvl_A Bifunctional polynucleo 55.4 5.7 0.0002 43.6 3.0 21 34-54 260-280 (416)
487 3foz_A TRNA delta(2)-isopenten 55.1 6.1 0.00021 41.9 3.0 37 33-69 11-57 (316)
488 2h92_A Cytidylate kinase; ross 55.1 6.3 0.00022 38.5 3.0 21 34-54 5-25 (219)
489 4edh_A DTMP kinase, thymidylat 55.0 6.4 0.00022 39.1 3.0 21 34-54 8-28 (213)
490 1iqp_A RFCS; clamp loader, ext 54.9 14 0.00046 38.1 5.7 25 31-55 45-69 (327)
491 1ewq_A DNA mismatch repair pro 54.8 4.8 0.00016 48.0 2.3 26 34-59 578-603 (765)
492 4b4t_K 26S protease regulatory 54.7 10 0.00035 41.9 4.8 33 19-55 196-229 (428)
493 3t15_A Ribulose bisphosphate c 54.2 11 0.00038 39.1 4.8 26 29-54 32-58 (293)
494 3a8t_A Adenylate isopentenyltr 54.2 9.9 0.00034 40.7 4.4 23 33-55 41-63 (339)
495 4fcw_A Chaperone protein CLPB; 53.8 12 0.00041 38.4 5.0 22 34-55 49-70 (311)
496 1bif_A 6-phosphofructo-2-kinas 53.7 6.3 0.00021 44.0 3.0 22 34-55 41-62 (469)
497 1c9k_A COBU, adenosylcobinamid 53.6 6.6 0.00023 38.1 2.7 20 35-54 2-21 (180)
498 1pls_A Pleckstrin homology dom 53.3 1.9 6.4E-05 37.7 -1.2 92 528-628 5-96 (113)
499 3ux8_A Excinuclease ABC, A sub 53.2 5.6 0.00019 46.5 2.6 15 35-49 47-61 (670)
500 1x1f_A Signal-transducing adap 53.1 1.9 6.5E-05 40.6 -1.2 91 528-629 18-109 (149)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=4.1e-149 Score=1316.79 Aligned_cols=742 Identities=69% Similarity=1.097 Sum_probs=646.1
Q ss_pred CCChhhhHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccc
Q psy3395 2 AGNPGLEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEY 81 (775)
Q Consensus 2 ~~~~~m~~li~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~ 81 (775)
|+|++|++||+++|+|||.|+++|.+..+++|+|||||.||+|||||||+|+|.+|||+|.|+|||||+++++.+.+.+|
T Consensus 21 ~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~ 100 (772)
T 3zvr_A 21 MGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEY 100 (772)
T ss_dssp ----CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCE
T ss_pred cccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcch
Confidence 79999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCccccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHH
Q psy3395 82 AEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDML 161 (775)
Q Consensus 82 ~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv 161 (775)
+++++.+++.++++++++.+|+.+++++.|.+++||.+++.++|++|++++|+||||||+++.++++||.++...+++++
T Consensus 101 ~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv 180 (772)
T 3zvr_A 101 AEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML 180 (772)
T ss_dssp EECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHH
T ss_pred hheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCChhcHHHHHhhcccccccCCCeEEE
Q psy3395 162 FQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLIL 241 (775)
Q Consensus 162 ~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~~d~~~~l~~~~~~~l~~G~~~~~ 241 (775)
..|+.++.++||+|++|+.++..++.+.+++.+++.|.++++| +||+|+++++....+++.++..+ +++| |+.
T Consensus 181 ~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlV----lNKiDlv~~~~~~~~il~~~~~~-l~lg--~~~ 253 (772)
T 3zvr_A 181 MQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGV----ITKLDLMDEGTDARDVLENKLLP-LRRG--YIG 253 (772)
T ss_dssp HHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEE----EECTTSSCTTCCSHHHHTTCSSC-CSSC--EEE
T ss_pred HHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEE----EeCcccCCcchhhHHHHHHHhhh-hhcc--CCc
Confidence 9999999999999999999999999999999999999999999 99999998877767777777777 8889 999
Q ss_pred EEcCCCcccccchHH--HHhhhcCCCCCCCCCcccccccChHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q psy3395 242 AVTPANSDLANSDAL--KLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQKQLLTLEKDVEQ 319 (775)
Q Consensus 242 V~nrsq~d~~~~~~~--~~~~E~~fF~~~p~~~~~~~r~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL~~ 319 (775)
|++.|..+..+-..+ +...|++||.++|.|..+.+++|+..|++.|++.|..||++.||.|+.+|+.++..++.++++
T Consensus 254 VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~ 333 (772)
T 3zvr_A 254 VVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDE 333 (772)
T ss_dssp CCCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHH
Confidence 999999887765555 667788899999999989999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCcccCcccccchhhhhHHhhhccccccccccCchHHhHHHHHHHH
Q psy3395 320 FKHFRPDDPSIKTKAMLQMIQQLQSDFERTIEGSGSAQINTMELSGGAKINRLFHERFPFEIVKMEFDEKELRREIAFAI 399 (775)
Q Consensus 320 lg~~~~~~~~~~~~~Ll~~i~~f~~~f~~~I~G~~~~~~~~~el~ggarI~~iF~~~f~~~l~~~~~~~~~~~~eI~~~i 399 (775)
||.++++++.++..+|++++++|++.|.++|+|.+. +.++.+|+|||||+++|++.|++.+.++++++..+++||+++|
T Consensus 334 ~~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~-~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i 412 (772)
T 3zvr_A 334 YKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGD-QIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAI 412 (772)
T ss_dssp HHHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC----------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred hCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCC-CcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHH
Confidence 999998888888899999999999999999999997 6888999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy3395 400 RNIHGIRVGLFTPDMAFEAIVKKQISRLKEPALKCVDLVVAELSNVVRICTDKMSRYPRLREETERIITSYVRNREQQCK 479 (775)
Q Consensus 400 ~ns~G~~~~lF~P~~afe~Lvk~qi~~~~~pa~~cv~~V~~eL~~iv~~~~~~~~rFP~L~~~i~~iv~~~L~e~~~~a~ 479 (775)
+|++|++|++|+|+.+||.||++||++|++||++||+.|+++|.+++++|.++|.|||+|++++.+++.++|++++.+|+
T Consensus 413 ~n~~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~ 492 (772)
T 3zvr_A 413 KNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCSEKLQQYPRLREEMERIVTTHIREREGRTK 492 (772)
T ss_dssp HHCC------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHGGGGTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCChhhhhhhhhhhhhhhhcccchhhccccCcc----cccccccccccccccCCCCCCccccccc
Q psy3395 480 EQIVLLVDCELAYMNTNHEDFIGFANVMFSAQQTTDNSNKAGRKLGNQ----VIRKGWMCIHNLGIMKGGSRDYWFVLTS 555 (775)
Q Consensus 480 ~~I~~Lid~E~~yInTnHpdFig~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~vl~~ 555 (775)
++|.+|||||++|||||||||+|+++|+..+.+.. + ++..+++ ++++||+..+|.+.++||+++|||||++
T Consensus 493 ~~V~~LId~E~ayintnHpdf~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 567 (772)
T 3zvr_A 493 EQVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMN----K-KKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTA 567 (772)
T ss_dssp HHHHHHHHHHHTCCCTTCTTCCCC--------------------------CCEEEEEEEEESSSCCC---CCEEEEEEES
T ss_pred HHHHHHHHHhcCCCCCCChhhhchHHHHHHHHHHh----h-cccccCCccccceeeeeeeecccccccCCCccceeeccc
Confidence 99999999999999999999999999654333222 1 2345666 8999999999999999999999999999
Q ss_pred cccccccchHHHHhhccCCcCCCccccccCCCCccccccccccCCCCcccchhhhhhccccccCCcchhhhhhhhcccCC
Q psy3395 556 ENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYP 635 (775)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (775)
++++||||++|++++|++|++++++|+.+.|||+++++|++|+++++|+||+|++++|+|++++++++|+++|+||||||
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 647 (772)
T 3zvr_A 568 ENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYP 647 (772)
T ss_dssp SEEEEESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHHHHTTCCB
T ss_pred cccccccchhhhcccccccccccccchhhhccccccccccccCCccccccchhhhhhhhccccccchhhHHhhhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC---C-CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3395 636 EKSTDQS---N-GDEGGTEGTSSMDPQLERQVETIRNLVDSYMKIVTKTCRDLVPKTIMLLIINNAKDFINGELLAHLYA 711 (775)
Q Consensus 636 ~~~~~~~---~-~~~~~~~~~~s~d~~~~~eve~Ir~Li~SYF~IVrKni~D~VPKaIm~~lVn~~k~~lq~eLv~~LY~ 711 (775)
++..... . .+++......++|||+++|||+||+||+|||+||+|||+|+|||||||||||++|++||+||+++||+
T Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ly~ 727 (772)
T 3zvr_A 648 ERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYS 727 (772)
T ss_dssp C------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHH
T ss_pred ccccccccccccCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8653110 1 11112234568999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3395 712 SGDQAAMMEESPEEALKREEMLRMYHACKEALRIIGDVSMATVST 756 (775)
Q Consensus 712 ~~~~~~LL~E~~~ia~rR~~~~~~l~aLk~A~~ii~ev~~~~~~~ 756 (775)
++++++||+|++++++||++|++||++||+|++||++|+++|+|+
T Consensus 728 ~~~~~~lm~Es~~~~~~r~~~~~~~~~l~~a~~ii~~i~~~~~~~ 772 (772)
T 3zvr_A 728 CGDQNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTTTVST 772 (772)
T ss_dssp TCCTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred ccCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 999999999999999999999999999999999999999999985
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=2.9e-93 Score=836.17 Aligned_cols=567 Identities=26% Similarity=0.398 Sum_probs=487.2
Q ss_pred HHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeecc--ccceeeecc--CCcc
Q psy3395 16 KLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSM--TEYAEFLHC--KGKK 91 (775)
Q Consensus 16 ~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~--~~~~~~~~~--~~~~ 91 (775)
++.|.|+++|++..++||+|+|||+|||||||||++|+|.. +|+++|.||++|..+++.+.+ ..|...+.. ....
T Consensus 29 ~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~-~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~ 107 (608)
T 3szr_A 29 DLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIE 107 (608)
T ss_dssp HHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CC
T ss_pred HHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCC-CCCCCCeEEEcCEEEEEecCCccccceeEEeeeccccc
Confidence 35577788999999999999999999999999999999994 699999999999999888754 356655543 2234
Q ss_pred ccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccE
Q psy3395 92 FVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCL 171 (775)
Q Consensus 92 ~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~i 171 (775)
+.++..|.+.|...+..+.+.+++++.+++.+.+.+|+.|+|+|+|+||+++.++++++.+...++.+++.+|+.+++++
T Consensus 108 l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~i 187 (608)
T 3szr_A 108 ISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETI 187 (608)
T ss_dssp CCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCC
T ss_pred CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCC
Confidence 56778888888887777778888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCChhc--HHHHHhhcccccccCCCeEEEEEcCCCcc
Q psy3395 172 ILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPAD--IEYQIKSMILQFIKRDNCLILAVTPANSD 249 (775)
Q Consensus 172 ILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~~d--~~~~l~~~~~~~l~~G~~~~~V~nrsq~d 249 (775)
||+|++++.|+++++++++++++||.|.||||| +||+|++++|+. +.++++|+..+ |++| ||+|+||+++|
T Consensus 188 il~vvt~~~d~a~~~~l~la~~v~~~g~rtI~V----lTK~Dlv~~g~~~~~~~~l~~~~~~-l~~g--~~~v~nr~~~~ 260 (608)
T 3szr_A 188 SLVVVPSNVDIATTEALSMAQEVDPEGDRTIGI----LTKPDLVDKGTEDKVVDVVRNLVFH-LKKG--YMIVKCRGQQE 260 (608)
T ss_dssp EEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEE----EECGGGSSSSSTTCCCCCC--CCSC-CSSC--EECCCCSCTTC
T ss_pred ceEEEeccchhccHHHHHHHHHHhhcCCceEEE----ecchhhcCcccHHHHHHHHhCcccc-cCce--EEEEecCchhh
Confidence 999999999999999999999999999999999 999999998864 45788999999 9999 99999999999
Q ss_pred cccchHH--HHhhhcCCCCCCCCCccccc--ccChHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhcCCCC
Q psy3395 250 LANSDAL--KLAKEVDPPGLHPSYRHLAD--RLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQKQLLTLEKDVEQFKHFRP 325 (775)
Q Consensus 250 ~~~~~~~--~~~~E~~fF~~~p~~~~~~~--r~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL~~lg~~~~ 325 (775)
+..+.++ +++.|++||.+||+|+.+.+ ++|+++|+++|+++|.+||+++||.|+++|+..+.+++++|++||++++
T Consensus 261 ~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~~ 340 (608)
T 3szr_A 261 IQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIP 340 (608)
T ss_dssp TTTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCC
T ss_pred cccCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9877665 78889999999999998864 8999999999999999999999999999999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcCCCCcccCcccccchhhhhHHhhhcccccccc-ccCchHHhHHHHHHHHHHhcC
Q psy3395 326 DDPSIKTKAMLQMIQQLQSDFERTIEGSGSAQINTMELSGGAKINRLFHERFPFEIVK-MEFDEKELRREIAFAIRNIHG 404 (775)
Q Consensus 326 ~~~~~~~~~Ll~~i~~f~~~f~~~I~G~~~~~~~~~el~ggarI~~iF~~~f~~~l~~-~~~~~~~~~~eI~~~i~ns~G 404 (775)
+++.+++.+|++++++|++.|+++++|.+. ....++..+++|+.+|+.+.. .+.. .+......++||+++++|++|
T Consensus 341 ~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~--~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~g 417 (608)
T 3szr_A 341 EDENEKMFFLIDKVNAFNQDITALMQGEET--VGEEDIRLFTRLRHEFHKWST-IIENNFQEGHKILSRKIQKFENQAAA 417 (608)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHSSCCC--CCTTCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCCc--CCCccccHHHHHHHHHHHHHH-HhhhcccccchhHHHHHHHHHHHccC
Confidence 889999999999999999999999999875 334567788899998876432 2211 122344568999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3395 405 IRVGLFTPDMAFEAIVKKQISRLKEPALKCVDLVVAELSNVVRICT-DKMSRYPRLREETERIITSYVRNREQQCKEQIV 483 (775)
Q Consensus 405 ~~~~lF~P~~afe~Lvk~qi~~~~~pa~~cv~~V~~eL~~iv~~~~-~~~~rFP~L~~~i~~iv~~~L~e~~~~a~~~I~ 483 (775)
+++|+|+|+.+|+.||++||++|++||++||+.|++++.+++.++. .+|.|||+|++++.+++.++++++..+|+++|.
T Consensus 418 ~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~ 497 (608)
T 3szr_A 418 AELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIR 497 (608)
T ss_dssp CSSSCSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998864 589999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCChhhhhhhhhhhhhhhhcccchhhccccCcccccccccccccccccCCCCCCccccccccccccccc
Q psy3395 484 LLVDCELAYMNTNHEDFIGFANVMFSAQQTTDNSNKAGRKLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKD 563 (775)
Q Consensus 484 ~Lid~E~~yInTnHpdFig~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~ 563 (775)
++++||+.| +|+|++|. . . .
T Consensus 498 ~li~mE~~~-~~~d~~~~---~--------~------------------------------------------~------ 517 (608)
T 3szr_A 498 LHFQMEQIV-YGAFQSSS---A--------T------------------------------------------D------ 517 (608)
T ss_dssp HHHHHHHHC-CCC-------------------------------------------------------------------
T ss_pred HHHHHhhcc-ccCCcccc---C--------C------------------------------------------C------
Confidence 999999987 56665442 0 0 0
Q ss_pred hHHHHhhccCCcCCCccccccCCCCccccccccccCCCCcccchhhhhhccccccCCcchhhhhhhhcccCCCCCCCCCC
Q psy3395 564 EEEREKKYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYPEKSTDQSN 643 (775)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (775)
T Consensus 518 -------------------------------------------------------------------------------- 517 (608)
T 3szr_A 518 -------------------------------------------------------------------------------- 517 (608)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHhhcCCH
Q psy3395 644 GDEGGTEGTSSMDPQLERQVETIRNLVDSYMKIVTKTCRDLVPKTIMLLIINNAKDFINGELLAHLYASGDQAAMMEESP 723 (775)
Q Consensus 644 ~~~~~~~~~~s~d~~~~~eve~Ir~Li~SYF~IVrKni~D~VPKaIm~~lVn~~k~~lq~eLv~~LY~~~~~~~LL~E~~ 723 (775)
.. +..|+.+|+|||+||+|+++|+|||+|||||||++++.||++|+++||+.+.+++||+|+|
T Consensus 518 -----------~~------~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~~~~~~~ll~E~~ 580 (608)
T 3szr_A 518 -----------SS------MEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERS 580 (608)
T ss_dssp ------------C------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCHHHHHHHTCCCH
T ss_pred -----------cc------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhCCCH
Confidence 00 0118999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3395 724 EEALKREEMLRMYHACKEALRIIGDVS 750 (775)
Q Consensus 724 ~ia~rR~~~~~~l~aLk~A~~ii~ev~ 750 (775)
++++||++|++++++|++|.++|+++.
T Consensus 581 ~~~~~R~~l~~~~~~L~~A~~~l~~~~ 607 (608)
T 3szr_A 581 DTSDKRKFLKERLARLTQARRRLAQFP 607 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999874
No 3
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=3.8e-52 Score=457.97 Aligned_cols=339 Identities=64% Similarity=0.994 Sum_probs=313.9
Q ss_pred CChhhhHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccce
Q psy3395 3 GNPGLEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYA 82 (775)
Q Consensus 3 ~~~~m~~li~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~ 82 (775)
.|++|++|++++|+|||.|+.+|....+++|+|+|||++|+|||||||+|+|.+|+|+++|+|||+|+++++.+.+.+|+
T Consensus 2 ~~~~~~~l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~ 81 (353)
T 2x2e_A 2 PEFSMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYA 81 (353)
T ss_dssp ----CCSCHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEE
T ss_pred cchhHHHHHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccce
Confidence 48999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCccccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHH
Q psy3395 83 EFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLF 162 (775)
Q Consensus 83 ~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~ 162 (775)
+|++.+++.+++++++..+|+.++.++.|.+++++..++.+++++|+..+|+||||||+.+.+.++|+.++.+.+++++.
T Consensus 82 ~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~ 161 (353)
T 2x2e_A 82 EFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLM 161 (353)
T ss_dssp EETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHH
T ss_pred eeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCChhcHHHHHhhcccccccCCCeEEEE
Q psy3395 163 QFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLILA 242 (775)
Q Consensus 163 ~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~~d~~~~l~~~~~~~l~~G~~~~~V 242 (775)
.|+.+++++||+|++++.++++++++.+++.++|.|.++++| +||+|++++++++.++++++..+ +++| |+.|
T Consensus 162 ~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V----~NK~Dl~~~~~~~~~~~~~~~~~-l~~~--~~~v 234 (353)
T 2x2e_A 162 QFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGV----ITKLDLMDEGTDARDVLENKLLP-LRRG--YIGV 234 (353)
T ss_dssp HHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEE----EECGGGSCTTCCCHHHHTTCSSC-CTTC--EEEC
T ss_pred HHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEE----eccccccCcchhHHHHHhCCccc-ccCC--ceEE
Confidence 999999999999999999999999999999999999999999 99999998877667788888777 8889 9999
Q ss_pred EcCCCcccccchHH--HHhhhcCCCCCCCCCcccccccChHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh
Q psy3395 243 VTPANSDLANSDAL--KLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQKQLLTLEKDVEQF 320 (775)
Q Consensus 243 ~nrsq~d~~~~~~~--~~~~E~~fF~~~p~~~~~~~r~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL~~l 320 (775)
++.|+.+..+-..+ +...|..||.+++.|....+++|+..|+..|++.|.+||++.||.++.+|+..+..++.+|++|
T Consensus 235 ~~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~ 314 (353)
T 2x2e_A 235 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEY 314 (353)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998876553333 5667888998889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhHH--HHHHHHHHHHHHHHHH
Q psy3395 321 KHFRPDDPSIKT--KAMLQMIQQLQSDFER 348 (775)
Q Consensus 321 g~~~~~~~~~~~--~~Ll~~i~~f~~~f~~ 348 (775)
|..++.++.++. .+|++++++|++.|+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 344 (353)
T 2x2e_A 315 KNFRPDKHGTDSRVDEMLRMYHALKEALSI 344 (353)
T ss_dssp HHHCCCSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 998888877655 8999999999999964
No 4
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=3.5e-51 Score=451.35 Aligned_cols=317 Identities=46% Similarity=0.695 Sum_probs=283.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCC--------CCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeecc
Q psy3395 7 LEQLIPIVNKLQDAFTQLGVPM--------QMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSM 78 (775)
Q Consensus 7 m~~li~~~~~l~d~l~~~G~~~--------~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~ 78 (775)
|++||+++|+|||++..+|... .++||+|||||+||||||||||+|+|.+|+|+++|+|||+|+++++.+.+
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC
Confidence 8999999999999999998531 36999999999999999999999999999999999999999999998765
Q ss_pred ---ccceeeeccCCccccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHH
Q psy3395 79 ---TEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQ 155 (775)
Q Consensus 79 ---~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~ 155 (775)
..|+.|.+.++..+.+|++++.++..++..+.|.+++|+.+++.+++.+|..++|+||||||+.+.+..+|+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 81 DGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK 160 (360)
T ss_dssp SCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH
T ss_pred CcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCChhcHHHHHhhcccccccC
Q psy3395 156 QIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKR 235 (775)
Q Consensus 156 ~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~~d~~~~l~~~~~~~l~~ 235 (775)
+++.++..|+.++++|||+|.+++.+..+++++.+++.+++.|.+|++| +||+|+++++....+++++...+ +++
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V----~nK~Dl~~~~~~~~~~~~~~~~~-~~~ 235 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGV----LTKIDLMDKGTDAVEILEGRSFK-LKY 235 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEE----EECGGGCCTTCCSHHHHTTSSSC-CSS
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEE----EeCCccCCCcccHHHHHcCcccc-ccC
Confidence 9999999999999999999999999999999999999999999999999 99999998887778888888777 888
Q ss_pred CCeEEEEEcCCCcccccchHH--HHhhhcCCCCCCCCCcccccccChHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q psy3395 236 DNCLILAVTPANSDLANSDAL--KLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQKQLLTL 313 (775)
Q Consensus 236 G~~~~~V~nrsq~d~~~~~~~--~~~~E~~fF~~~p~~~~~~~r~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~ 313 (775)
| |+.|+|+++.++....++ +...|..||.+||.|+.+.+++|+.+|+.+|+++|.+||+++||.|+.+|+..+.++
T Consensus 236 ~--~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~ 313 (360)
T 3t34_A 236 P--WVGVVNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLEL 313 (360)
T ss_dssp C--CEEECCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTT
T ss_pred C--eEEEEECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9 999999999988765444 778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCchh
Q psy3395 314 EKDVEQFKHFRPDDPSI 330 (775)
Q Consensus 314 ~~eL~~lg~~~~~~~~~ 330 (775)
+++|++||+++++++.+
T Consensus 314 ~~~l~~lg~~~~~~~~~ 330 (360)
T 3t34_A 314 ETELSRLGKPIAHGTDS 330 (360)
T ss_dssp TCC--------------
T ss_pred HHHHHHcCCCCCCCHHH
Confidence 99999999998876544
No 5
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=8.3e-39 Score=341.68 Aligned_cols=297 Identities=69% Similarity=1.050 Sum_probs=268.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeec
Q psy3395 7 LEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLH 86 (775)
Q Consensus 7 m~~li~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~ 86 (775)
|++|++++++|+|.|+.+|.....++|+|+|||++|+|||||||+|+|..|+|++.|+||++|+++++.+...+|+++++
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~ 80 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLH 80 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETT
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhh
Confidence 89999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhh
Q psy3395 87 CKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFIT 166 (775)
Q Consensus 87 ~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~ 166 (775)
.+|..+++++.+...++.++.++.|.+++++..++.+++++|+..+++||||||+...+.++++.+++..++.++..|+.
T Consensus 81 ~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (299)
T 2aka_B 81 CKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT 160 (299)
T ss_dssp STTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHT
T ss_pred cCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHc
Confidence 99999999999999998888888888889999999999999999999999999999877777888888889999999999
Q ss_pred ccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCChhcHHHHHhhcccccccCCCeEEEEEcCC
Q psy3395 167 KETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLILAVTPA 246 (775)
Q Consensus 167 ~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~~d~~~~l~~~~~~~l~~G~~~~~V~nrs 246 (775)
+.+++||+|++++.++..++.+.+++.+++.+.++++| +||+|+.++..+..+.+++...+ ++.| |+.+++.|
T Consensus 161 ~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V----~NK~Dl~~~~~~~~~~~~~~~~~-~~~~--~~~v~~~S 233 (299)
T 2aka_B 161 KENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGV----ITKLDLMDEGTDARDVLENKLLP-LRRG--YIGVVNRS 233 (299)
T ss_dssp STTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEE----EECGGGSCTTCCCHHHHTTCSSC-CTTC--EEECCCCC
T ss_pred CCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEE----EEccccCCCCchHHHHHhCCcCc-CCCC--cEEEECCC
Confidence 99999999999999999999888999999999999999 99999997766556777776555 7778 99999998
Q ss_pred CcccccchHH--HHhhhcCCCCCCCCCcccccccChHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q psy3395 247 NSDLANSDAL--KLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQKQL 310 (775)
Q Consensus 247 q~d~~~~~~~--~~~~E~~fF~~~p~~~~~~~r~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l 310 (775)
..+..+-..+ .+..|..||..++.|.....++|+..|...|.+.|..|+++.+|.++.+|++++
T Consensus 234 A~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~~ 299 (299)
T 2aka_B 234 QKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299 (299)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhC
Confidence 8775543333 556677888777889999899999999999999999999999999999998763
No 6
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=5.2e-39 Score=346.36 Aligned_cols=305 Identities=52% Similarity=0.825 Sum_probs=242.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeecc--------c
Q psy3395 8 EQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSM--------T 79 (775)
Q Consensus 8 ~~li~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~--------~ 79 (775)
++||+++|+|||.++.+|++ .+++|+|+|||.+|+|||||||+|+|.+|+|++.++|||+|+++++.+.+ .
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~-~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~ 79 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSD-PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQ 79 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSC-TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCC
T ss_pred CchHHHHHHHHHHHHHcCCC-CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchh
Confidence 46999999999999999997 79999999999999999999999999999999999999999999998863 4
Q ss_pred cceeeeccCCccccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHH
Q psy3395 80 EYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKD 159 (775)
Q Consensus 80 ~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~ 159 (775)
+|+++.+.++..+.+|+++.+++..++.++.|.+++++.+++.+++++|+..+++||||||+.+.+..+++.++.+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~ 159 (315)
T 1jwy_B 80 EWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRR 159 (315)
T ss_dssp CEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHH
T ss_pred hhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHH
Confidence 79999999999999999999999999888888888999999999999999999999999999887776777888888999
Q ss_pred HHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCChhcHHHHHhhcccccccCCCeE
Q psy3395 160 MLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCL 239 (775)
Q Consensus 160 lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~~d~~~~l~~~~~~~l~~G~~~ 239 (775)
++..|+...+++||+|.+++.++.+++.+.+++.+++.+.++++| +||+|+.+...+..+.+++...+ ++.+ |
T Consensus 160 ~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v----~NK~Dl~~~~~~~~~~~~~~~~~-~~~~--~ 232 (315)
T 1jwy_B 160 MVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGV----ITKLDLMDKGTDAMEVLTGRVIP-LTLG--F 232 (315)
T ss_dssp HHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEE----EECTTSSCSSCCCHHHHTTSSSC-CTTC--E
T ss_pred HHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEE----EcCcccCCcchHHHHHHhCCCcc-CCCC--e
Confidence 999999999999999988888888888788899999999999999 99999997665556677766555 6678 9
Q ss_pred EEEEcCCCcccccchHH--HHhhhcCCCCCCCCCcccccccChHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Q psy3395 240 ILAVTPANSDLANSDAL--KLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQKQLLTLEKDV 317 (775)
Q Consensus 240 ~~V~nrsq~d~~~~~~~--~~~~E~~fF~~~p~~~~~~~r~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL 317 (775)
+.|.+.+...++....+ ....+..||..+|.|..+..++|+..|...|.+.+.+|+++.+|.++.+|+..|.+++++|
T Consensus 233 ~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~l 312 (315)
T 1jwy_B 233 IGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGEL 312 (315)
T ss_dssp EECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred EEEecCChhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999998775433323 4556677887778888888899999999999999999999999999999999999999999
Q ss_pred HHh
Q psy3395 318 EQF 320 (775)
Q Consensus 318 ~~l 320 (775)
++|
T Consensus 313 ~~~ 315 (315)
T 1jwy_B 313 STY 315 (315)
T ss_dssp ---
T ss_pred HhC
Confidence 875
No 7
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.7e-37 Score=322.36 Aligned_cols=265 Identities=17% Similarity=0.190 Sum_probs=187.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCCCcccCcccccchhhhhHHhhhccccccccccCch----HHhHHHHHHHHHHh
Q psy3395 327 DPSIKTKAMLQMIQQLQSDFERTIEGSGSAQINTMELSGGAKINRLFHERFPFEIVKMEFDE----KELRREIAFAIRNI 402 (775)
Q Consensus 327 ~~~~~~~~Ll~~i~~f~~~f~~~I~G~~~~~~~~~el~ggarI~~iF~~~f~~~l~~~~~~~----~~~~~eI~~~i~ns 402 (775)
+++++..+|+..|+.|++++.+.+.|... . ..|++||...+...|..-...++... ....++|.+..+++
T Consensus 2 ~~~e~~~FLidkI~~F~~di~~l~~Gee~--~----~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~ 75 (271)
T 3ljb_A 2 DENEKMFFLIDKVNAFNQDITALMQGEET--V----GEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQY 75 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCC--C----CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCceec--c----cCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHc
Confidence 45678899999999999999999999875 1 12566766666555543322222221 22357888899999
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3395 403 HGIRVGLFTPDMAFEAIVKKQISRLKEPALKCVDLVVAELSNVVRICTD-KMSRYPRLREETERIITSYVRNREQQCKEQ 481 (775)
Q Consensus 403 ~G~~~~lF~P~~afe~Lvk~qi~~~~~pa~~cv~~V~~eL~~iv~~~~~-~~~rFP~L~~~i~~iv~~~L~e~~~~a~~~ 481 (775)
+|+++|+|+|+.|||.||++||++|++||++|++.|+++|.+++.++.. +|.|||+|++++.+++.+++.+|..+|+++
T Consensus 76 rGrELPgFv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~ 155 (271)
T 3ljb_A 76 RGRELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKL 155 (271)
T ss_dssp -------CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998865 799999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCChhhhhhhhhhhhhhhhcccchhhccccCcccccccccccccccccCCCCCCccccccccccccc
Q psy3395 482 IVLLVDCELAYMNTNHEDFIGFANVMFSAQQTTDNSNKAGRKLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWF 561 (775)
Q Consensus 482 I~~Lid~E~~yInTnHpdFig~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~ 561 (775)
|+++++||+ +++|+|..|.+..+.+. ....
T Consensus 156 I~~~~~mE~-~vytqD~~Y~~~l~~~r-----~~~~-------------------------------------------- 185 (271)
T 3ljb_A 156 IRLHFQMEQ-IVYCQDQVYRGALQKVR-----EKEL-------------------------------------------- 185 (271)
T ss_dssp HHHHHHHHT-SCC-------------------------------------------------------------------
T ss_pred HHHHHHHhc-ccccCCHHHHHHHHHHH-----HHHh--------------------------------------------
Confidence 999999999 78999999887654210 0000
Q ss_pred cchHHHHhhccCCcCCCccccccCCCCccccccccccCCCCcccchhhhhhccccccCCcchhhhhhhhcccCCCCCCCC
Q psy3395 562 KDEEEREKKYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYPEKSTDQ 641 (775)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (775)
+.++.. + .+ + .|.. .+..
T Consensus 186 ----~~~~~~--~----------~~--~---------------------------------~~~~-------~~~~---- 203 (271)
T 3ljb_A 186 ----EEEKKK--K----------SW--D---------------------------------FGAF-------QSSS---- 203 (271)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----cccccc--c----------cc--c---------------------------------cccc-------cCCC----
Confidence 000000 0 00 0 0000 0000
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHhhcC
Q psy3395 642 SNGDEGGTEGTSSMDPQLERQVETIRNLVDSYMKIVTKTCRDLVPKTIMLLIINNAKDFINGELLAHLYASGDQAAMMEE 721 (775)
Q Consensus 642 ~~~~~~~~~~~~s~d~~~~~eve~Ir~Li~SYF~IVrKni~D~VPKaIm~~lVn~~k~~lq~eLv~~LY~~~~~~~LL~E 721 (775)
+. ...++.|..++.|||+||+|+++|+|||+||||||+.+++.||++|+..||+.+.++.||+|
T Consensus 204 ------------~~----~~~~~Ei~~~l~sYf~i~~~rl~d~IP~~I~~~ll~~~~~~lQ~~ml~~l~~~~~~~~LL~E 267 (271)
T 3ljb_A 204 ------------AT----DSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKE 267 (271)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSCGGGHHHHTCC
T ss_pred ------------Cc----cchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHhcC
Confidence 00 01356699999999999999999999999999999999999999999999999999999999
Q ss_pred CHHH
Q psy3395 722 SPEE 725 (775)
Q Consensus 722 ~~~i 725 (775)
++++
T Consensus 268 ~~d~ 271 (271)
T 3ljb_A 268 RSDT 271 (271)
T ss_dssp C---
T ss_pred CCCC
Confidence 9985
No 8
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=99.62 E-value=1.6e-17 Score=152.26 Aligned_cols=110 Identities=76% Similarity=1.386 Sum_probs=104.6
Q ss_pred cccccccccccccccCCCCCCccccccccccccccchHHHHhhccCCcCCCccccccCCCCccccccccccCCCCcccch
Q psy3395 528 VIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKD 607 (775)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (775)
|+++|||..++.|.++++++.+||||+++.+.||||+++++.++++|++|..+++.+.|+++.++.|.+|++++++++++
T Consensus 12 VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~eke~~G~IpL~~~~vr~v~~~~~~rk~~F~l~~~d~r~v~~~ 91 (125)
T 1dyn_A 12 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKD 91 (125)
T ss_dssp EEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTTCSCEEEEEECTTEEEEECCSCSSSSCEEEEEEETTSSCSSTT
T ss_pred eEEEEEEEEecCccccCCceeeEEEEeccceeeecCCcccccceEEECCCceEeccCCCCCCCceEEEEECCCCcccccc
Confidence 89999999888899999999999999999999999999999999999999999998888888889999999998899999
Q ss_pred hhhhhccccccCCcchhhhhhhhcccCCCC
Q psy3395 608 YKQLELSCENQDDVDSWKASFLRAGVYPEK 637 (775)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (775)
+.++.++|++++++++|+++++|+|++|++
T Consensus 92 h~~y~LsA~t~ee~~~Wi~s~~ra~v~p~~ 121 (125)
T 1dyn_A 92 YRQLELACETQEEVDSWKASFLRAGVYPER 121 (125)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHTTCEECC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHhCccCcCc
Confidence 999999999999999999999999999986
No 9
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.59 E-value=6.4e-14 Score=166.51 Aligned_cols=169 Identities=19% Similarity=0.256 Sum_probs=112.4
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCc--cccChHHHHHHHH---HHH
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGK--KFVDFDEVRREIE---AET 106 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~--~~~d~~~v~~~i~---~~~ 106 (775)
-+.|+|||.+|+|||||||+|+|..++|++.+.||++|+.+.+.........+ ..+. ...+++.+...+. ++.
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~--~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHF--NDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEE--SSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEE--cCCCcccccChhhhhhhhcCCHHHH
Confidence 56799999999999999999999999999999999999999775432111111 1111 1222222221110 011
Q ss_pred hhhcCCCCcccccCeEEEEecCCC---cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCcc
Q psy3395 107 DRITGSNKGISNVPINLRVYSPNV---LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLA 183 (775)
Q Consensus 107 ~~~~g~~~~~s~~~i~l~i~~p~~---~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~ 183 (775)
..+.+.+....+....++++.|.. .+++|||+||+..... ...++..|+.+.+. ||.|++++..+.
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----------~~~~~~~~i~~aD~-vL~Vvda~~~~s 215 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----------RNELSLGYVNNCHA-ILFVMRASQPCT 215 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----------CHHHHTHHHHSSSE-EEEEEETTSTTC
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----------HHHHHHHHHHhCCE-EEEEEeCCCccc
Confidence 112223334456677888888865 4799999999865311 24578889988765 566677777766
Q ss_pred chHHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 184 TSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 184 ~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.++.-.+.+.+...+.++++| +||+|+.+.
T Consensus 216 ~~e~~~l~~~l~~~~~~iiiV----lNK~Dl~~~ 245 (695)
T 2j69_A 216 LGERRYLENYIKGRGLTVFFL----VNAWDQVRE 245 (695)
T ss_dssp HHHHHHHHHHTTTSCCCEEEE----EECGGGGGG
T ss_pred hhHHHHHHHHHHhhCCCEEEE----EECcccccc
Confidence 666544444566667789999 999999754
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.81 E-value=1.8e-08 Score=101.57 Aligned_cols=127 Identities=20% Similarity=0.200 Sum_probs=81.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCc--ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETD 107 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g--~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 107 (775)
-..|+|+|||..++|||||+++|+|..++...+. .+|+.+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 68 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI-------------------------------------- 68 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--------------------------------------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--------------------------------------
Confidence 4578999999999999999999999864222111 122211
Q ss_pred hhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhcccc--EEEEEecCCCCccch
Q psy3395 108 RITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETC--LILAVTPANTDLATS 185 (775)
Q Consensus 108 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~--iILaV~~a~~d~~~s 185 (775)
....+.......++|+|+||+..... +....+.++.++..|+..... +++.|+.+...+...
T Consensus 69 -------------~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~ 132 (223)
T 4dhe_A 69 -------------NYFSVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL 132 (223)
T ss_dssp -------------EEEEESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH
T ss_pred -------------EEEEecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH
Confidence 11111112235789999999865322 233456778899999988544 356666666544433
Q ss_pred H--HHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 186 D--ALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 186 ~--~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+ .+..++. .+...+.| +||+|+.+.
T Consensus 133 ~~~~~~~l~~---~~~p~i~v----~nK~Dl~~~ 159 (223)
T 4dhe_A 133 DRRMIEWFAP---TGKPIHSL----LTKCDKLTR 159 (223)
T ss_dssp HHHHHHHHGG---GCCCEEEE----EECGGGSCH
T ss_pred HHHHHHHHHh---cCCCEEEE----EeccccCCh
Confidence 2 3444444 45678999 999999864
No 11
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.78 E-value=1.1e-07 Score=101.92 Aligned_cols=122 Identities=19% Similarity=0.241 Sum_probs=78.0
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
.-|++||..++|||||+++|+|..+...+.. .+||..+...
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~-------------------------------------- 52 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGV-------------------------------------- 52 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE--------------------------------------
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEE--------------------------------------
Confidence 3599999999999999999999886433222 2333322111
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--H-H
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--A-L 188 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~-l 188 (775)
...+.-..++|+|+||+..... ...+.+.....+..|+...+++++++- ++......+ . +
T Consensus 53 -------------~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~il~VvD-~~~~~~~~~~~~~~ 115 (308)
T 3iev_A 53 -------------KNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFMID-ATEGWRPRDEEIYQ 115 (308)
T ss_dssp -------------EEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSEEEEEEE-TTTBSCHHHHHHHH
T ss_pred -------------EecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCEEEEEEe-CCCCCCchhHHHHH
Confidence 1111133588999999975321 133455667788899998887766554 443333333 2 4
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
..++. .+...+.| +||+|+.+
T Consensus 116 ~~l~~---~~~pvilV----~NK~Dl~~ 136 (308)
T 3iev_A 116 NFIKP---LNKPVIVV----INKIDKIG 136 (308)
T ss_dssp HHTGG---GCCCEEEE----EECGGGSS
T ss_pred HHHHh---cCCCEEEE----EECccCCC
Confidence 44444 45678999 99999984
No 12
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.73 E-value=1.8e-08 Score=103.49 Aligned_cols=128 Identities=18% Similarity=0.238 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCc--ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETD 107 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g--~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 107 (775)
-..++|++||..++|||||+++|+|..+...+.. .+|+.+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~---------------------------------- 72 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS---------------------------------- 72 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE----------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE----------------------------------
Confidence 4567899999999999999999999887443322 3444332111
Q ss_pred hhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc--h
Q psy3395 108 RITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT--S 185 (775)
Q Consensus 108 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~--s 185 (775)
+.+ .-..++|+|+||+...... ..++.+.+...+..+...++++|+++ +++ ++.. .
T Consensus 73 ---------------~~~---~~~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~-d~~-~~~~~~~ 130 (239)
T 3lxx_A 73 ---------------SSW---KETELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHALLLVV-PLG-RYTEEEH 130 (239)
T ss_dssp ---------------EEE---TTEEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEEEEEE-ETT-CCSSHHH
T ss_pred ---------------EEe---CCceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEe-eCC-CCCHHHH
Confidence 111 1125789999999764332 23344456666666666677776655 443 2322 2
Q ss_pred HHHHHHHh-cCC-CCCcceeccCCCCcccCCCCC
Q psy3395 186 DALQIAKQ-VDP-DVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 186 ~~l~lar~-~DP-~g~RtigVdLPGlTK~D~~~~ 217 (775)
..+....+ +.. .+..++.| +||.|+.+.
T Consensus 131 ~~l~~~~~~~~~~~~~~~iiv----~nK~D~~~~ 160 (239)
T 3lxx_A 131 KATEKILKMFGERARSFMILI----FTRKDDLGD 160 (239)
T ss_dssp HHHHHHHHHHHHHHGGGEEEE----EECGGGC--
T ss_pred HHHHHHHHHhhhhccceEEEE----EeCCccCCc
Confidence 33333322 111 12468889 999998754
No 13
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.72 E-value=2.2e-08 Score=115.83 Aligned_cols=165 Identities=15% Similarity=0.210 Sum_probs=92.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCc--cccCcccccccEEEEEeeccccceeeeccCCccc-cChHHHHHHHHHHHh
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFL--PRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKF-VDFDEVRREIEAETD 107 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~fl--Pr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~-~d~~~v~~~i~~~~~ 107 (775)
..|.|+|||..|+|||||||+|+|..+. +.+...+|.+.+.+...... ... .+... .+.+. .+ .
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~----~i~--~g~~l~~~~~~---~~----~ 130 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETE----GTV--PGNALVVDPEK---PF----R 130 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSS----EEE--CCC------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcc----ccc--CCceeeecCcc---cH----H
Confidence 5699999999999999999999999874 46666666554443321110 000 01100 01000 00 0
Q ss_pred hhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHH--HHHHHHHHHhhccccEEEEEecCCCCccch
Q psy3395 108 RITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQ--QIKDMLFQFITKETCLILAVTPANTDLATS 185 (775)
Q Consensus 108 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~--~i~~lv~~yi~~~~~iILaV~~a~~d~~~s 185 (775)
.+...+..+....+++.+.++....++|||+||+..... ..+.. ....++..|+...+++|++|-+.+.++..
T Consensus 131 ~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~----~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~- 205 (550)
T 2qpt_A 131 KLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAK----QRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISD- 205 (550)
T ss_dssp -------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCH-
T ss_pred HHhhhcccccccceEEeccccccCCEEEEECcCCCCcch----hHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCH-
Confidence 011112334445566666555556899999999865211 11111 13467788888888776655543324433
Q ss_pred HHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 186 DALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 186 ~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
....+++.+...+.+.+.| +||+|+.++
T Consensus 206 ~~~~~l~~l~~~~~pvilV----lNK~Dl~~~ 233 (550)
T 2qpt_A 206 EFSEAIGALRGHEDKIRVV----LNKADMVET 233 (550)
T ss_dssp HHHHHHHHTTTCGGGEEEE----EECGGGSCH
T ss_pred HHHHHHHHHHhcCCCEEEE----EECCCccCH
Confidence 2334445555556788999 999999864
No 14
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.70 E-value=7.5e-08 Score=101.33 Aligned_cols=136 Identities=16% Similarity=0.248 Sum_probs=75.6
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
-.|+|||..++|||||+|+|+|...++.+...++..+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~------------------------------------------- 45 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI------------------------------------------- 45 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc-------------------------------------------
Confidence 3699999999999999999999876543321111000
Q ss_pred CCcccccCeEEEEecCC-CcceEEEeCCCCCccCCC-CCcccHHHHHHHHHHHHhhc-------------cccEEEEEec
Q psy3395 113 NKGISNVPINLRVYSPN-VLNITLIDLPGLTKVPVG-DQPIDIEQQIKDMLFQFITK-------------ETCLILAVTP 177 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~-~~~LtlvDlPG~~~~~~~-~q~~di~~~i~~lv~~yi~~-------------~~~iILaV~~ 177 (775)
..++..+.....+...+ ...++|+|+||+...... ..-..+...+.+-...|+.. .+++++.|.+
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~ 125 (274)
T 3t5d_A 46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125 (274)
T ss_dssp ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence 00111111222222222 247999999998543221 11122222333334667665 4467777777
Q ss_pred CCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 178 ANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 178 a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+...+...+ ..+.+.+.. +...|.| +||+|+...
T Consensus 126 ~~~~~~~~d-~~~l~~l~~-~~pvi~V----~nK~D~~~~ 159 (274)
T 3t5d_A 126 SGHGLKPLD-IEFMKRLHE-KVNIIPL----IAKADTLTP 159 (274)
T ss_dssp CCSSCCHHH-HHHHHHHTT-TSCEEEE----ESSGGGSCH
T ss_pred CCCCCCHHH-HHHHHHHhc-cCCEEEE----EeccCCCCH
Confidence 765665544 334455554 6788999 999999753
No 15
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.70 E-value=5.6e-08 Score=95.53 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=74.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcc--cccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI--VTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETD 107 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~--~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 107 (775)
-..+.|+|+|..++|||||+++|+|..|.+..... +|+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--------------------------------------- 61 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT--------------------------------------- 61 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CC---------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceee---------------------------------------
Confidence 45789999999999999999999998764321110 1110
Q ss_pred hhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccc--cEEEEEecCCCCccch
Q psy3395 108 RITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKET--CLILAVTPANTDLATS 185 (775)
Q Consensus 108 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~--~iILaV~~a~~d~~~s 185 (775)
.....+. ..++|+|+||+.... .+.+..+..+.++..|+.... ..++.|.+++......
T Consensus 62 ------------~~~~~~~----~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 122 (195)
T 1svi_A 62 ------------LNFYIIN----DELHFVDVPGYGFAK---VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSND 122 (195)
T ss_dssp ------------EEEEEET----TTEEEEECCCBCCCS---SCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH
T ss_pred ------------EEEEEEC----CcEEEEECCCCCccc---cCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHH
Confidence 0111111 168999999975432 234445567888999988762 3445555665544333
Q ss_pred H--HHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 186 D--ALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 186 ~--~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+ .+..++. .+...+.| +||.|+.+.
T Consensus 123 ~~~~~~~~~~---~~~p~i~v----~nK~Dl~~~ 149 (195)
T 1svi_A 123 DVQMYEFLKY---YGIPVIVI----ATKADKIPK 149 (195)
T ss_dssp HHHHHHHHHH---TTCCEEEE----EECGGGSCG
T ss_pred HHHHHHHHHH---cCCCEEEE----EECcccCCh
Confidence 3 2344443 45678899 999999864
No 16
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.66 E-value=1.3e-07 Score=92.58 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcc-cccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDR 108 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~-~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 108 (775)
-..|+|+|+|..++|||||+++|+|..+-+..... +|+.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~--------------------------------------- 61 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSI--------------------------------------- 61 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCE---------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCe---------------------------------------
Confidence 45789999999999999999999998642222211 11111
Q ss_pred hcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccc--cEEEEEecCCCCccchH
Q psy3395 109 ITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKET--CLILAVTPANTDLATSD 186 (775)
Q Consensus 109 ~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~--~iILaV~~a~~d~~~s~ 186 (775)
..... -..++++|+||+..... +.......+.++..|+.... .+++.|+.+......++
T Consensus 62 ------------~~~~~----~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~ 122 (195)
T 3pqc_A 62 ------------NFYLV----NSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSD 122 (195)
T ss_dssp ------------EEEEE----TTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH
T ss_pred ------------EEEEE----CCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHH
Confidence 00000 12478999999754321 22233457788888988763 34566666655443333
Q ss_pred --HHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 187 --ALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 187 --~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+..++.. +...+.| +||.|+.+.
T Consensus 123 ~~~~~~~~~~---~~p~i~v----~nK~Dl~~~ 148 (195)
T 3pqc_A 123 LMMVEWMKSL---NIPFTIV----LTKMDKVKM 148 (195)
T ss_dssp HHHHHHHHHT---TCCEEEE----EECGGGSCG
T ss_pred HHHHHHHHHc---CCCEEEE----EEChhcCCh
Confidence 33444443 5678899 999999754
No 17
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.64 E-value=6.8e-08 Score=100.93 Aligned_cols=121 Identities=15% Similarity=0.216 Sum_probs=72.1
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
+|.|++||..++|||||+++|+|..+ ..+.- .+|.-.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~----------------------------------------- 38 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEK----------------------------------------- 38 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEE-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEE-----------------------------------------
Confidence 48999999999999999999999864 22211 112100
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHh--hccccEEEEEecCCCCccchHHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFI--TKETCLILAVTPANTDLATSDAL 188 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi--~~~~~iILaV~~a~~d~~~s~~l 188 (775)
..-.+.+.+ ..++|+||||+......++.... -+.+...|+ .+++.+|+++-..+ ....+
T Consensus 39 --------~~~~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~---~e~i~~~~~~~~~~d~vi~VvDas~----~~~~~ 100 (256)
T 3iby_A 39 --------KTGEFLLGE---HLIEITDLPGVYSLVANAEGISQ---DEQIAAQSVIDLEYDCIINVIDACH----LERHL 100 (256)
T ss_dssp --------EEEEEEETT---EEEEEEECCCCSSCC------CH---HHHHHHHHHHHSCCSEEEEEEEGGG----HHHHH
T ss_pred --------EEEEEEECC---eEEEEEeCCCcccccccccCCCH---HHHHHHHHHhhCCCCEEEEEeeCCC----chhHH
Confidence 001111111 27889999998654322111122 234667787 67777766654433 12234
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+..++-..+.+.+.| +||+|+.+
T Consensus 101 ~l~~~l~~~~~pvilv----~NK~Dl~~ 124 (256)
T 3iby_A 101 YLTSQLFELGKPVVVA----LNMMDIAE 124 (256)
T ss_dssp HHHHHHTTSCSCEEEE----EECHHHHH
T ss_pred HHHHHHHHcCCCEEEE----EEChhcCC
Confidence 4455555557889999 99999864
No 18
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.62 E-value=1.8e-07 Score=98.06 Aligned_cols=126 Identities=15% Similarity=0.202 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDR 108 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 108 (775)
..-+.|+|||..++|||||+++|+|..+.+.+.. .+|+.+...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~------------------------------------ 80 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMV------------------------------------ 80 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEE------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEE------------------------------------
Confidence 3457899999999999999999999886443332 223322211
Q ss_pred hcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhh--ccccEEEEEecCCCCccch-
Q psy3395 109 ITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFIT--KETCLILAVTPANTDLATS- 185 (775)
Q Consensus 109 ~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iILaV~~a~~d~~~s- 185 (775)
.+.. ....++|+|+||+..... +.......+..|+. ..+++++++......+...
T Consensus 81 ---------------~~~~-~~~~l~iiDTpG~~~~~~------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~ 138 (270)
T 1h65_A 81 ---------------SRSR-AGFTLNIIDTPGLIEGGY------INDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLD 138 (270)
T ss_dssp ---------------EEEE-TTEEEEEEECCCSEETTE------ECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHH
T ss_pred ---------------EEee-CCeEEEEEECCCCCCCcc------chHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHH
Confidence 1111 123689999999865311 11123344566654 3555555543322234333
Q ss_pred -HHHHHHHhc-CCC-CCcceeccCCCCcccCCCCC
Q psy3395 186 -DALQIAKQV-DPD-VLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 186 -~~l~lar~~-DP~-g~RtigVdLPGlTK~D~~~~ 217 (775)
..++.+++. .+. ..+++.| +||+|+.++
T Consensus 139 ~~~~~~l~~~~~~~~~~~iivV----~nK~Dl~~~ 169 (270)
T 1h65_A 139 KLVAKAITDSFGKGIWNKAIVA----LTHAQFSPP 169 (270)
T ss_dssp HHHHHHHHHHHCGGGGGGEEEE----EECCSCCCG
T ss_pred HHHHHHHHHHhCcccccCEEEE----EECcccCCc
Confidence 344544433 221 1478899 999999754
No 19
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.59 E-value=1.8e-07 Score=97.22 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=76.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcc--cccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI--VTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETD 107 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~--~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 107 (775)
-....|+|||..++|||||+++|+|...++.+.+. +|+......
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~---------------------------------- 65 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ---------------------------------- 65 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEE----------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEE----------------------------------
Confidence 45678999999999999999999998754543321 344221100
Q ss_pred hhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH-
Q psy3395 108 RITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD- 186 (775)
Q Consensus 108 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~- 186 (775)
+.+ .-..+.|+|+||+..... ........+...+..|+...+++|+++.... +...+
T Consensus 66 ---------------~~~---~~~~i~iiDTpG~~~~~~--~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~~ 123 (260)
T 2xtp_A 66 ---------------GSW---GNREIVIIDTPDMFSWKD--HCEALYKEVQRCYLLSAPGPHVLLLVTQLGR--YTSQDQ 123 (260)
T ss_dssp ---------------EEE---TTEEEEEEECCGGGGSSC--CCHHHHHHHHHHHHHHTTCCSEEEEEEETTC--CCHHHH
T ss_pred ---------------EEe---CCCEEEEEECcCCCCCCC--CHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--CCHHHH
Confidence 001 123588999999875432 2222223445566678888887777655442 43332
Q ss_pred -HHHHHHhc-CCC-CCcceeccCCCCc-ccCCCC
Q psy3395 187 -ALQIAKQV-DPD-VLNLTLVDLPGMT-KVPIGD 216 (775)
Q Consensus 187 -~l~lar~~-DP~-g~RtigVdLPGlT-K~D~~~ 216 (775)
++..++++ .+. +...+.| +| |.|+.+
T Consensus 124 ~~~~~l~~~~~~~~~~~~i~v----v~nK~Dl~~ 153 (260)
T 2xtp_A 124 QAAQRVKEIFGEDAMGHTIVL----FTHKEDLNG 153 (260)
T ss_dssp HHHHHHHHHHCGGGGGGEEEE----EECGGGGTT
T ss_pred HHHHHHHHHhCchhhccEEEE----EEcccccCC
Confidence 44555543 211 3456777 78 999974
No 20
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.58 E-value=3.2e-07 Score=98.12 Aligned_cols=123 Identities=20% Similarity=0.283 Sum_probs=78.9
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
-..|++||..++|||||+|+|+|..+...+.. .+||..+.-
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~-------------------------------------- 48 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRG-------------------------------------- 48 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEE--------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEE--------------------------------------
Confidence 35699999999999999999999887433221 233322110
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--HH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--AL 188 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~l 188 (775)
+....-..++|+||||+... ...+.+.....+..|+...++++++ ++++..+...+ ++
T Consensus 49 --------------i~~~~~~~l~l~DTpG~~~~-----~~~l~~~~~~~~~~~l~~ad~il~V-vD~~~~~~~~~~~i~ 108 (301)
T 1wf3_A 49 --------------ILTEGRRQIVFVDTPGLHKP-----MDALGEFMDQEVYEALADVNAVVWV-VDLRHPPTPEDELVA 108 (301)
T ss_dssp --------------EEEETTEEEEEEECCCCCCC-----CSHHHHHHHHHHHHHTSSCSEEEEE-EETTSCCCHHHHHHH
T ss_pred --------------EEEeCCcEEEEecCccccch-----hhHHHHHHHHHHHHHHhcCCEEEEE-EECCCCCChHHHHHH
Confidence 00012346889999998752 1234455677888999888866555 45544443333 34
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
..+++..+ +...+.| +||+|+.+.
T Consensus 109 ~~l~~~~~-~~p~ilV----~NK~Dl~~~ 132 (301)
T 1wf3_A 109 RALKPLVG-KVPILLV----GNKLDAAKY 132 (301)
T ss_dssp HHHGGGTT-TSCEEEE----EECGGGCSS
T ss_pred HHHHhhcC-CCCEEEE----EECcccCCc
Confidence 55555432 4678889 999999864
No 21
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.54 E-value=1.5e-07 Score=89.04 Aligned_cols=120 Identities=20% Similarity=0.219 Sum_probs=72.5
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
+|+|+|+|+.++|||||+++|+|..+...+.. .+|+-
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 38 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRD------------------------------------------ 38 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------C------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceec------------------------------------------
Confidence 48999999999999999999998764211111 11110
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc--hHHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT--SDAL 188 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~--s~~l 188 (775)
.....+...+ ..+.|+|+||..... +.......+...|+...+++|+++...+ .+.. ....
T Consensus 39 ---------~~~~~~~~~~-~~~~l~Dt~G~~~~~------~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~ 101 (161)
T 2dyk_A 39 ---------LKEGVVETDR-GRFLLVDTGGLWSGD------KWEKKIQEKVDRALEDAEVVLFAVDGRA-ELTQADYEVA 101 (161)
T ss_dssp ---------CEEEEEEETT-EEEEEEECGGGCSSS------SCCHHHHHHHHHHTTTCSEEEEEEESSS-CCCHHHHHHH
T ss_pred ---------ceEEEEEeCC-ceEEEEECCCCCCcc------chHHHHHHHHHHHHHhCCEEEEEEECCC-cccHhHHHHH
Confidence 0111111111 267899999986532 1233566778889999888877665443 2322 2344
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
...+. .+...+.| .||.|+.+.
T Consensus 102 ~~~~~---~~~p~ilv----~nK~Dl~~~ 123 (161)
T 2dyk_A 102 EYLRR---KGKPVILV----ATKVDDPKH 123 (161)
T ss_dssp HHHHH---HTCCEEEE----EECCCSGGG
T ss_pred HHHHh---cCCCEEEE----EECcccccc
Confidence 44444 23567888 899998754
No 22
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.54 E-value=2.7e-07 Score=90.01 Aligned_cols=123 Identities=20% Similarity=0.323 Sum_probs=71.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
+++|+|+|+.++|||||+++|+|..| +.+. ..+|+.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~------------------------------------------ 37 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRK------------------------------------------ 37 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTS------------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCccce------------------------------------------
Confidence 47899999999999999999999875 3221 111221
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhc-cccEE--EEEecCCCCccch--
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITK-ETCLI--LAVTPANTDLATS-- 185 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~-~~~iI--LaV~~a~~d~~~s-- 185 (775)
+..+.+. .+.++|+||+.... +.+....+..+.+...|+.. .+.++ +.|+.+.. +.+.
T Consensus 38 ---------~~~~~~~-----~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s-~~~~~~ 100 (190)
T 2cxx_A 38 ---------IIEIEWK-----NHKIIDMPGFGFMM--GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKA-APEIIK 100 (190)
T ss_dssp ---------CEEEEET-----TEEEEECCCBSCCT--TSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTH-HHHHHH
T ss_pred ---------eEEEecC-----CEEEEECCCccccc--cCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchh-hhhHHH
Confidence 1122221 68899999975432 22333345677888888876 55433 44444432 1000
Q ss_pred ---------HHHHHHHhcCCCCCcceeccCCCCcccCCCCCh
Q psy3395 186 ---------DALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQP 218 (775)
Q Consensus 186 ---------~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~ 218 (775)
....+.+.....+...+.| .||.|+.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~piilv----~nK~Dl~~~~ 138 (190)
T 2cxx_A 101 RWEKRGEIPIDVEFYQFLRELDIPTIVA----VNKLDKIKNV 138 (190)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCEEEE----EECGGGCSCH
T ss_pred hhhccCccHHHHHHHHHHHhcCCceEEE----eehHhccCcH
Confidence 0011222222234667888 8898887653
No 23
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.53 E-value=1.9e-07 Score=96.86 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=68.8
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcc--cccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI--VTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~--~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
-.+|++||..++|||||+++|+|..++..+... +|+.+.....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~----------------------------------- 65 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSR----------------------------------- 65 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEE-----------------------------------
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEE-----------------------------------
Confidence 357999999999999999999998875443322 4543321111
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DA 187 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~ 187 (775)
.+ ....++|+|+||+....... ..+....+..-+..+...+++++++ ++++. +... .+
T Consensus 66 --------------~~---~~~~i~liDTPG~~~~~~~~-~~~~~~~i~~~~~~~~~~~d~il~V-~d~~~-~~~~~~~~ 125 (247)
T 3lxw_A 66 --------------RW---DKCHVEVVDTPDIFSSQVSK-TDPGCEERGHCYLLSAPGPHALLLV-TQLGR-FTAQDQQA 125 (247)
T ss_dssp --------------EE---TTEEEEEEECCSCSSTTHHH-HSTTSHHHHHHHHHHTTCCSEEEEE-EETTB-CCHHHHHH
T ss_pred --------------EE---CCcEEEEEECCCCCCCCCCc-HHHHHHHHHHHHHhcCCCCCEEEEE-EeCCC-CCHHHHHH
Confidence 01 12358899999996432111 0111112222222333667766555 44542 4333 34
Q ss_pred HHHHHhc-CCC--CCcceeccCCCCcccCCCCC
Q psy3395 188 LQIAKQV-DPD--VLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 188 l~lar~~-DP~--g~RtigVdLPGlTK~D~~~~ 217 (775)
+..+++. ++. +...+.| .+|.|+.+.
T Consensus 126 ~~~l~~~~~~~~~~~~iilv----~nK~Dl~~~ 154 (247)
T 3lxw_A 126 VRQVRDMFGEDVLKWMVIVF----TRKEDLAGG 154 (247)
T ss_dssp HHHHHHHHCGGGGGGEEEEE----ECGGGGTTC
T ss_pred HHHHHHHhChhhhccEEEEE----EchHhcCCC
Confidence 5555543 332 3456677 799998653
No 24
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.46 E-value=6.5e-07 Score=90.97 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..++|+|||..++|||||+++|+|..|
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~ 54 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANV 54 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999999876
No 25
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.46 E-value=4e-07 Score=89.34 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 13 IVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 13 ~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+.+.|.+.+........-..+.|+|+|..++||||++++|+|..|
T Consensus 29 l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 29 WREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp HHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 333333333333333345678999999999999999999999875
No 26
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.44 E-value=5.1e-07 Score=87.02 Aligned_cols=118 Identities=16% Similarity=0.256 Sum_probs=71.6
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhh
Q psy3395 29 QMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDR 108 (775)
Q Consensus 29 ~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 108 (775)
.-..+.|+|+|+.++|||||+++|++..|.+......|.-.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~--------------------------------------- 45 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI--------------------------------------- 45 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTC---------------------------------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEee---------------------------------------
Confidence 34578999999999999999999999886432222222100
Q ss_pred hcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHH
Q psy3395 109 ITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDAL 188 (775)
Q Consensus 109 ~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l 188 (775)
....+.+.+ ..++|+|+||...... +...|+...+++|+++. ++.. .....+
T Consensus 46 ----------~~~~~~~~~---~~~~l~Dt~G~~~~~~-------------~~~~~~~~~d~~i~v~d-~~~~-~~~~~~ 97 (178)
T 2lkc_A 46 ----------GAYQVTVND---KKITFLDTPGHEAFTT-------------MRARGAQVTDIVILVVA-ADDG-VMPQTV 97 (178)
T ss_dssp ----------CCCEEEETT---EEEEESCCCSSSSSSC-------------SCCSSCCCCCEEEEEEE-TTCC-CCHHHH
T ss_pred ----------eEEEEEeCC---ceEEEEECCCCHHHHH-------------HHHHHHhhCCEEEEEEE-CCCC-CcHHHH
Confidence 001111211 2467999999644211 22356666777766654 4332 234444
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
..++.+...+...+.| +||.|+.+.
T Consensus 98 ~~l~~~~~~~~p~ilv----~nK~Dl~~~ 122 (178)
T 2lkc_A 98 EAINHAKAANVPIIVA----INKMDKPEA 122 (178)
T ss_dssp HHHHHHGGGSCCEEEE----EETTTSSCS
T ss_pred HHHHHHHhCCCCEEEE----EECccCCcC
Confidence 5555544445678888 899999764
No 27
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.44 E-value=1.7e-06 Score=90.32 Aligned_cols=125 Identities=18% Similarity=0.288 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
.-..|+|||..++|||||+++|+|..+...+.- .+|..+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~------------------------------------- 77 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMV------------------------------------- 77 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEE-------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEE-------------------------------------
Confidence 456899999999999999999999875332221 122221111
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhc-cccEEEEEecCCC-Cccch--
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITK-ETCLILAVTPANT-DLATS-- 185 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~-~~~iILaV~~a~~-d~~~s-- 185 (775)
.+.. .-..++|+|+||+..... ..+.....+..|+.. .-.++|.|.+.+. .+...
T Consensus 78 ------------~~~~---~~~~l~liDTpG~~~~~~------~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~ 136 (262)
T 3def_A 78 ------------SRTM---GGFTINIIDTPGLVEAGY------VNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDK 136 (262)
T ss_dssp ------------EEEE---TTEEEEEEECCCSEETTE------ECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHH
T ss_pred ------------EEEE---CCeeEEEEECCCCCCccc------chHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHH
Confidence 1111 112789999999865321 112334455666643 2234455544332 34333
Q ss_pred HHHHHHHhcCCCC--CcceeccCCCCcccCCCCC
Q psy3395 186 DALQIAKQVDPDV--LNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 186 ~~l~lar~~DP~g--~RtigVdLPGlTK~D~~~~ 217 (775)
..++.+++.-+.. ..++.| +||.|+.+.
T Consensus 137 ~~~~~l~~~~~~~~~~~~ivv----~nK~Dl~~~ 166 (262)
T 3def_A 137 QVVIAITQTFGKEIWCKTLLV----LTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHCGGGGGGEEEE----EECTTCCCS
T ss_pred HHHHHHHHHhchhhhcCEEEE----EeCcccCCC
Confidence 3565555532221 367889 999999743
No 28
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.42 E-value=5e-07 Score=102.12 Aligned_cols=126 Identities=20% Similarity=0.218 Sum_probs=71.7
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHh
Q psy3395 29 QMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETD 107 (775)
Q Consensus 29 ~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 107 (775)
....|.|++||..++|||||+++|+|..+-..... .+||
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~---------------------------------------- 59 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTR---------------------------------------- 59 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC--------------------------------------------------
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcce----------------------------------------
Confidence 46789999999999999999999999654211110 1121
Q ss_pred hhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH
Q psy3395 108 RITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA 187 (775)
Q Consensus 108 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~ 187 (775)
+.....+... ...++|+|+||+... ...+.+.++.++..|+...+.+|++ +++...+...+
T Consensus 60 -----------~~~~~~~~~~-~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~V-vD~~~~~~~~d- 120 (456)
T 4dcu_A 60 -----------DRIYSSAEWL-NYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADVIIFM-VNGREGVTAAD- 120 (456)
T ss_dssp ------------CEEEECTTC-SSCCEEECCCC-----------CCHHHHHHHHHHHHHHCSEEEEE-EESSSCSCHHH-
T ss_pred -----------eEEEEEEEEC-CceEEEEECCCCCCc-----chHHHHHHHHHHHhhHhhCCEEEEE-EeCCCCCChHH-
Confidence 1122222211 236889999998631 2334567888999999998866665 45554443333
Q ss_pred HHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 188 l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
..+++.+...+...+.| .+|+|+.+.
T Consensus 121 ~~l~~~l~~~~~pvilV----~NK~D~~~~ 146 (456)
T 4dcu_A 121 EEVAKILYRTKKPVVLA----VNKLDNTEM 146 (456)
T ss_dssp HHHHHHHTTCCSCEEEE----EECC-----
T ss_pred HHHHHHHHHcCCCEEEE----EECccchhh
Confidence 23333333366788899 999998643
No 29
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.40 E-value=1.7e-06 Score=95.06 Aligned_cols=126 Identities=18% Similarity=0.255 Sum_probs=72.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
.+|.|++||..+|||||||++|+|..+...+.-..|+-|+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~--------------------------------------- 218 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKR--------------------------------------- 218 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCE---------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEE---------------------------------------
Confidence 57889999999999999999999987521122123332211
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc---cc--h
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL---AT--S 185 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~---~~--s 185 (775)
-.+.+.+ ..+.++|+||+.. ..|.+..+.++.+. .++...+.+++ |+.+.... .. .
T Consensus 219 ----------~~i~~~g---~~v~l~DT~G~i~----~lp~~lve~f~~tl-~~~~~aD~il~-VvD~s~~~~~~~~~~~ 279 (364)
T 2qtf_A 219 ----------YAIPINN---RKIMLVDTVGFIR----GIPPQIVDAFFVTL-SEAKYSDALIL-VIDSTFSENLLIETLQ 279 (364)
T ss_dssp ----------EEEEETT---EEEEEEECCCBCS----SCCGGGHHHHHHHH-HGGGGSSEEEE-EEETTSCHHHHHHHHH
T ss_pred ----------EEEEECC---EEEEEEeCCCchh----cCCHHHHHHHHHHH-HHHHhCCEEEE-EEECCCCcchHHHHHH
Confidence 1222222 3568999999754 22455555565554 46666665555 45443322 11 1
Q ss_pred HHHHHHHhcCCCCCcceeccCCCCcccCCCCCh
Q psy3395 186 DALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQP 218 (775)
Q Consensus 186 ~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~ 218 (775)
.+..+.+.+...+...+.| .+|+|+.+.+
T Consensus 280 ~~~~~L~~l~~~~~p~ilV----~NK~Dl~~~~ 308 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVT----LNKIDKINGD 308 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEE----EECGGGCCSC
T ss_pred HHHHHHHHhCcCCCCEEEE----EECCCCCCch
Confidence 1345556666556778999 9999998654
No 30
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.36 E-value=9.6e-07 Score=94.34 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=69.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDR 108 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 108 (775)
+.-+.|++||..++|||||+|+|+|..+-+.+.. ..||....-
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~g------------------------------------ 49 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVG------------------------------------ 49 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEE------------------------------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEE------------------------------------
Confidence 3445799999999999999999999875332221 123321100
Q ss_pred hcCCCCcccccCeEEEEecCCCcceEEEeCCCCC-ccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH
Q psy3395 109 ITGSNKGISNVPINLRVYSPNVLNITLIDLPGLT-KVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA 187 (775)
Q Consensus 109 ~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~-~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~ 187 (775)
.+. .+...++++|+||+. ... ..+.......+..++...+.+ +.|+++.. +...+.
T Consensus 50 ---------------i~~-~~~~~i~~iDTpG~~~~~~-----~~l~~~~~~~~~~~l~~~D~v-l~Vvd~~~-~~~~~~ 106 (301)
T 1ega_A 50 ---------------IHT-EGAYQAIYVDTPGLHMEEK-----RAINRLMNKAASSSIGDVELV-IFVVEGTR-WTPDDE 106 (301)
T ss_dssp ---------------EEE-ETTEEEEEESSSSCCHHHH-----HHHHHHHTCCTTSCCCCEEEE-EEEEETTC-CCHHHH
T ss_pred ---------------EEE-ECCeeEEEEECcCCCccch-----hhHHHHHHHHHHHHHhcCCEE-EEEEeCCC-CCHHHH
Confidence 000 112368899999985 210 011111122234455555544 55555544 654442
Q ss_pred HHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 188 l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+++.+...+...+.| ++|+|+...
T Consensus 107 -~i~~~l~~~~~P~ilv----lNK~D~~~~ 131 (301)
T 1ega_A 107 -MVLNKLREGKAPVILA----VNKVDNVQE 131 (301)
T ss_dssp -HHHHHHHSSSSCEEEE----EESTTTCCC
T ss_pred -HHHHHHHhcCCCEEEE----EECcccCcc
Confidence 3333333345678888 999999863
No 31
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.36 E-value=1.9e-06 Score=84.38 Aligned_cols=119 Identities=13% Similarity=0.200 Sum_probs=72.4
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
..+|+|+|..++|||||+++|++..|.+......|.-..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 54 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK----------------------------------------- 54 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEE-----------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEE-----------------------------------------
Confidence 468999999999999999999987763322111111000
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~l~ 189 (775)
...+.+. .....++|+|+||... .+.+...|+...+.+|+++-..+.+- .....+.
T Consensus 55 --------~~~~~~~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 112 (196)
T 3tkl_A 55 --------IRTIELD-GKTIKLQIWDTAGQER-------------FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 112 (196)
T ss_dssp --------EEEEEET-TEEEEEEEEEECCSGG-------------GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred --------EEEEEEC-CEEEEEEEEECCCcHh-------------hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHH
Confidence 0011110 0123688999999532 13367788888888877665443211 1122444
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+....+.+...+.| +||.|+.+.
T Consensus 113 ~i~~~~~~~~p~ilv----~nK~Dl~~~ 136 (196)
T 3tkl_A 113 EIDRYASENVNKLLV----GNKCDLTTK 136 (196)
T ss_dssp HHHHHSCTTCEEEEE----EECTTCTTT
T ss_pred HHHHhcCCCCCEEEE----EECcccccc
Confidence 455555556788888 899998754
No 32
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.34 E-value=7.2e-07 Score=93.95 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
-+.|+++|..++|||||+++|+|..+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~ 28 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ 28 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc
Confidence 36799999999999999999999875
No 33
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.32 E-value=2.1e-06 Score=85.78 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
..+.|+|||+.++|||||+++|++..|.+... .|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~--~~~~~----------------------------------------- 42 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT--SITDS----------------------------------------- 42 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC--CCSCE-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC--Cccee-----------------------------------------
Confidence 35789999999999999999999877632221 11100
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHH-HHHHHhhccccEEEEEecCCCCccchHHHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKD-MLFQFITKETCLILAVTPANTDLATSDALQ 189 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~-lv~~yi~~~~~iILaV~~a~~d~~~s~~l~ 189 (775)
...+.+.+.....++|+|+||.. ..+. +...|+...+.+|+++-..+..-....+..
T Consensus 43 ---------~~~~~~~~~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 100 (214)
T 2fh5_B 43 ---------SAIYKVNNNRGNSLTLIDLPGHE-------------SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAE 100 (214)
T ss_dssp ---------EEEEECSSTTCCEEEEEECCCCH-------------HHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHH
T ss_pred ---------eEEEEecCCCccEEEEEECCCCh-------------hHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHH
Confidence 00011111113468899999963 2333 778899988888776654331101112222
Q ss_pred HHH----h--cCCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAK----Q--VDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar----~--~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
... . ....+...+.| .||.|+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~piilv----~nK~Dl~~~ 130 (214)
T 2fh5_B 101 FLYQVLIDSMALKNSPSLLIA----CNKQDIAMA 130 (214)
T ss_dssp HHHHHHHHHHTSTTCCEEEEE----EECTTSTTC
T ss_pred HHHHHHhhhhhcccCCCEEEE----EECCCCCCc
Confidence 221 1 23445678889 999999854
No 34
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.32 E-value=9.5e-07 Score=99.32 Aligned_cols=120 Identities=20% Similarity=0.326 Sum_probs=69.5
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
+|.|++||..++|||||++.|+|..+--.+. -.+||-..
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~---------------------------------------- 40 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPV---------------------------------------- 40 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC--------------CCS----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCcccee----------------------------------------
Confidence 5899999999999999999999976311111 12222110
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--HH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--AL 188 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~l 188 (775)
.-.+++.+ ..++|+||||+.... ...+.+.++.++..|+...+.+|++| ++...+...+ ..
T Consensus 41 ---------~~~~~~~~---~~~~l~DT~G~~~~~----~~~~~~~~~~~~~~~~~~ad~il~V~-D~~~~~~~~d~~i~ 103 (439)
T 1mky_A 41 ---------QDTVEWYG---KTFKLVDTCGVFDNP----QDIISQKMKEVTLNMIREADLVLFVV-DGKRGITKEDESLA 103 (439)
T ss_dssp ---------EEEEEETT---EEEEEEECTTTTSSG----GGCCCHHHHHHHHHHHTTCSEEEEEE-ETTTCCCHHHHHHH
T ss_pred ---------eEEEEECC---eEEEEEECCCccccc----cchHHHHHHHHHHHHHHhCCEEEEEE-ECCCCCCHHHHHHH
Confidence 01112211 247899999986421 12234567888999999988776654 5554443332 33
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIG 215 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~ 215 (775)
.+.++ .+...+.| .+|+|+.
T Consensus 104 ~~l~~---~~~p~ilv----~NK~D~~ 123 (439)
T 1mky_A 104 DFLRK---STVDTILV----ANKAENL 123 (439)
T ss_dssp HHHHH---HTCCEEEE----EESCCSH
T ss_pred HHHHH---cCCCEEEE----EeCCCCc
Confidence 43443 24567788 8888864
No 35
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.31 E-value=1.3e-06 Score=86.84 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=71.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
-..+.|+|||+.++|||||+++|+|..|.+......++-..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--------------------------------------- 58 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK--------------------------------------- 58 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEE---------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE---------------------------------------
Confidence 34678999999999999999999988763322211111000
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDA 187 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~ 187 (775)
...+.+.+ ....++|+|+||.... +.+...|+...+.+|+++...+.+ +.. ...
T Consensus 59 ----------~~~~~~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~ 114 (213)
T 3cph_A 59 ----------IKTVDING-KKVKLQLWDTAGQERF-------------RTITTAYYRGAMGIILVYDVTDERTFTNIKQW 114 (213)
T ss_dssp ----------EEEEEETT-EEEEEEEECCTTGGGG-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHH
T ss_pred ----------EEEEEECC-EEEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence 00111110 1236889999995332 224567888888877766543321 111 233
Q ss_pred HHHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 188 l~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+..++...+.+...+.| +||+|+.+
T Consensus 115 ~~~i~~~~~~~~piilv----~nK~Dl~~ 139 (213)
T 3cph_A 115 FKTVNEHANDEAQLLLV----GNKSDMET 139 (213)
T ss_dssp HHHHHHHTTTCSEEEEE----EECTTCSS
T ss_pred HHHHHHhcCCCCCEEEE----EECCCCcc
Confidence 45555555556788889 99999843
No 36
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.31 E-value=7.5e-07 Score=85.60 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=68.6
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
-.+|+|+|..++|||||+++|++..|.+....+.+.-...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 53 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS---------------------------------------- 53 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEE----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEE----------------------------------------
Confidence 3579999999999999999999877633222111110000
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-cc-chHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LA-TSDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~-~s~~l~ 189 (775)
..+.+. .....+.|+|+||... .+.+...|+.+.+.+|+++...+.+ +. ....+.
T Consensus 54 ---------~~~~~~-~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 110 (179)
T 2y8e_A 54 ---------KTMYLE-DRTVRLQLWDTAGQER-------------FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWID 110 (179)
T ss_dssp ---------EEEEET-TEEEEEEEEEECCSGG-------------GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred ---------EEEEEC-CeEEEEEEEECCCcHH-------------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 000110 0123588999999532 1235667888888877765543321 11 112333
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.++...+.+...+.| +||.|+.+
T Consensus 111 ~i~~~~~~~~piilv----~nK~Dl~~ 133 (179)
T 2y8e_A 111 DVRTERGSDVIIMLV----GNKTDLSD 133 (179)
T ss_dssp HHHHHHTTSSEEEEE----EECGGGGG
T ss_pred HHHHhcCCCCcEEEE----EECCcccc
Confidence 333333445677888 89999864
No 37
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.31 E-value=1.4e-06 Score=97.79 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=69.0
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
.|.|++||..++|||||+++|+|..+-..... .+||-
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d------------------------------------------ 40 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRD------------------------------------------ 40 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccc------------------------------------------
Confidence 58999999999999999999998654111110 12221
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQI 190 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~l 190 (775)
.....+... -..++|+|+||+... ..++.+.++.+...|+...+.+|++| .+...+...+ ..+
T Consensus 41 ---------~~~~~~~~~-~~~~~l~DT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~vv-D~~~~~~~~d-~~~ 103 (436)
T 2hjg_A 41 ---------RIYSSAEWL-NYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADVIIFMV-NGREGVTAAD-EEV 103 (436)
T ss_dssp ---------CEEEECTTC-SSCCEEEC--------------CHHHHHHHHHHHHHHHCSEEEEEE-ETTTCSCHHH-HHH
T ss_pred ---------eEEEEEEEC-CceEEEEECCCCCCc-----chhHHHHHHHHHHHHHHhCCEEEEEE-eCCCCCCHHH-HHH
Confidence 111111111 135889999998632 12366678889999999988766554 4544443333 233
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
++.+...+...+.| ++|+|+.+.
T Consensus 104 ~~~l~~~~~pvilv----~NK~D~~~~ 126 (436)
T 2hjg_A 104 AKILYRTKKPVVLA----VNKLDNTEM 126 (436)
T ss_dssp HHHHTTCCSCEEEE----EECCCC---
T ss_pred HHHHHHcCCCEEEE----EECccCccc
Confidence 33344456788888 899998643
No 38
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.31 E-value=1.6e-06 Score=82.04 Aligned_cols=117 Identities=16% Similarity=0.237 Sum_probs=68.0
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
..+|+|+|..++|||||+++|++..|.+ .....+......
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~--------------------------------------- 43 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVE-DYEPTKADSYRK--------------------------------------- 43 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEE---------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCC-CCCCCcceEEEE---------------------------------------
Confidence 3579999999999999999999887522 211111110000
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-c-chHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-A-TSDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-~-~s~~l~ 189 (775)
.+.+. .....+.|+|+||... .+.+...|+.+.+++|+++...+.+- . ....+.
T Consensus 44 ----------~~~~~-~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 99 (168)
T 1u8z_A 44 ----------KVVLD-GEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFRE 99 (168)
T ss_dssp ----------EEEET-TEEEEEEEEECCC----------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHH
T ss_pred ----------EEEEC-CEEEEEEEEECCCcch-------------hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00110 1123688999999432 24577888988888877765443211 0 011122
Q ss_pred -HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 -IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 -lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+.+.....+...+.| +||.|+.+
T Consensus 100 ~i~~~~~~~~~piilv----~nK~Dl~~ 123 (168)
T 1u8z_A 100 QILRVKEDENVPFLLV----GNKSDLED 123 (168)
T ss_dssp HHHHHHCCTTSCEEEE----EECGGGGG
T ss_pred HHHHhcCCCCCcEEEE----EECccccc
Confidence 223334446788888 89999864
No 39
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.31 E-value=1.1e-06 Score=83.76 Aligned_cols=117 Identities=16% Similarity=0.223 Sum_probs=67.5
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
.+|+|+|..++|||||+++|+|..|.+......++-..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~------------------------------------------ 41 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK------------------------------------------ 41 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEE------------------------------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEE------------------------------------------
Confidence 47999999999999999999998763222111111000
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~l 190 (775)
...+.+. .....+.|+|+||.... +.+...|+++.+.+|+++...+.+ +.. ...+..
T Consensus 42 -------~~~~~~~-~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 100 (170)
T 1g16_A 42 -------IKTVDIN-GKKVKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT 100 (170)
T ss_dssp -------EEEEESS-SCEEEEEEECCTTGGGT-------------SCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHH
T ss_pred -------EEEEEEC-CEEEEEEEEeCCCChhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 0001111 11236889999995332 224567888888777765543321 111 233444
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
++...+.+...+.| +||.|+.+
T Consensus 101 i~~~~~~~~piilv----~nK~Dl~~ 122 (170)
T 1g16_A 101 VNEHANDEAQLLLV----GNKSDMET 122 (170)
T ss_dssp HHHHSCTTCEEEEE----EECTTCTT
T ss_pred HHHhcCCCCcEEEE----EECccCCc
Confidence 45444456778888 89999843
No 40
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.30 E-value=2.3e-06 Score=84.66 Aligned_cols=118 Identities=19% Similarity=0.280 Sum_probs=71.4
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
...|+|||..++|||||+++|++..|.+......+ +....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~---~~~~~------------------------------------- 47 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG---IDFKV------------------------------------- 47 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCS---EEEEE-------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc---eeEEE-------------------------------------
Confidence 46899999999999999999999876322111100 00000
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-cc-chHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LA-TSDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~-~s~~l~ 189 (775)
..+.+ ......+.|+|+||... .+.+...|+.+.+++|+++-..+.+ +. ....+.
T Consensus 48 ---------~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~ 104 (203)
T 1zbd_A 48 ---------KTIYR-NDKRIKLQIWDTAGLER-------------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWST 104 (203)
T ss_dssp ---------EEEEE-TTEEEEEEEEEECCSGG-------------GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHH
T ss_pred ---------EEEEE-CCeEEEEEEEECCCchh-------------hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHH
Confidence 00011 01123688999999632 2457788999888877766543321 11 112334
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.++...+.+...+.| +||.|+.+
T Consensus 105 ~i~~~~~~~~piilv----~nK~Dl~~ 127 (203)
T 1zbd_A 105 QIKTYSWDNAQVLLV----GNKCDMED 127 (203)
T ss_dssp HHHHHSCSSCEEEEE----EECTTCTT
T ss_pred HHHHhcCCCCCEEEE----EECcccCc
Confidence 444444556778888 89999865
No 41
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.29 E-value=1.3e-06 Score=83.15 Aligned_cols=117 Identities=15% Similarity=0.277 Sum_probs=69.3
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
.+|+|+|..++|||||+++|+|..|.+....... ....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~---~~~~--------------------------------------- 44 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG---ASFM--------------------------------------- 44 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCS---EEEE---------------------------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcee---EEEE---------------------------------------
Confidence 5799999999999999999999876332111000 0000
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-cc-hHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-AT-SDALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-~~-s~~l~l 190 (775)
...+.+ ......++|+|+||... .+.+...|+.+.+.+|+++...+.+. .. ...+..
T Consensus 45 -------~~~~~~-~~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~ 103 (170)
T 1z0j_A 45 -------TKTVQY-QNELHKFLIWDTAGLER-------------FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE 103 (170)
T ss_dssp -------EEEEEE-TTEEEEEEEEEECCSGG-------------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHH
T ss_pred -------EEEEEE-CCeEEEEEEEcCCCchh-------------hhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHH
Confidence 000011 01123588999999732 13366778888888777665433211 11 123444
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
++...+.....+.| .||.|+.+
T Consensus 104 l~~~~~~~~~iilv----~nK~Dl~~ 125 (170)
T 1z0j_A 104 LRQHGPPSIVVAIA----GNKCDLTD 125 (170)
T ss_dssp HHHHSCTTSEEEEE----EECTTCGG
T ss_pred HHHhCCCCCcEEEE----EECCcccc
Confidence 55554445667777 89999874
No 42
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.29 E-value=2.5e-06 Score=85.56 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=25.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
-..|.|+|+|..++|||||+++|++..|
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4679999999999999999999999876
No 43
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.28 E-value=2.1e-06 Score=82.44 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=70.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
....|+|+|+.++|||||+++|++..|......+ +....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t-~~~~~---------------------------------------- 52 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHT-IGVEF---------------------------------------- 52 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTS-CCCCE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-cceEE----------------------------------------
Confidence 3568999999999999999999998762211111 00000
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-c-chHHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-A-TSDAL 188 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-~-~s~~l 188 (775)
....+.+. .....+.|+|+||... .+.+...|+++.+++|+++...+..- . ....+
T Consensus 53 --------~~~~~~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 110 (179)
T 1z0f_A 53 --------GTRIIEVS-GQKIKLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWL 110 (179)
T ss_dssp --------EEEEEEET-TEEEEEEEEECTTGGG-------------TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHH
T ss_pred --------EEEEEEEC-CeEEEEEEEECCCChH-------------hhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHH
Confidence 00011111 1123688999999432 23467888988888877665433211 1 11233
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
..++.....+...+.| +||.|+.+
T Consensus 111 ~~~~~~~~~~~piilv----~nK~Dl~~ 134 (179)
T 1z0f_A 111 TDARNLTNPNTVIILI----GNKADLEA 134 (179)
T ss_dssp HHHHHHSCTTCEEEEE----EECTTCGG
T ss_pred HHHHHhcCCCCcEEEE----EECccccc
Confidence 4445544446678888 89999864
No 44
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.28 E-value=2e-06 Score=83.24 Aligned_cols=119 Identities=15% Similarity=0.233 Sum_probs=69.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
.....|+|+|..++|||||+++|++..|.+.... .|......
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~------------------------------------- 57 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEP-TKADSYRK------------------------------------- 57 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCT-TCCEEEEE-------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCC-ccceEEEE-------------------------------------
Confidence 4556799999999999999999998876322111 11111000
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-cc-hHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-AT-SDA 187 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-~~-s~~ 187 (775)
.+.+. .....+.|+|+||... .+.+...|+.+.+.+|+++...+.+- .. ...
T Consensus 58 ------------~~~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 111 (187)
T 2a9k_A 58 ------------KVVLD-GEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEMESFAATADF 111 (187)
T ss_dssp ------------EEEET-TEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHH
T ss_pred ------------EEEEC-CEEEEEEEEECCCCcc-------------cHHHHHHHhccCCEEEEEEECcCHHHHHHHHHH
Confidence 00110 1123688999999532 13467788888888877765443211 00 111
Q ss_pred HH-HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 188 LQ-IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 188 l~-lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+. +.+.....+...+.| +||+|+.+
T Consensus 112 ~~~i~~~~~~~~~piilv----~nK~Dl~~ 137 (187)
T 2a9k_A 112 REQILRVKEDENVPFLLV----GNKSDLED 137 (187)
T ss_dssp HHHHHHHHCCTTCCEEEE----EECGGGGG
T ss_pred HHHHHHhcCCCCCCEEEE----EECccccc
Confidence 22 223333346678888 89999864
No 45
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.28 E-value=2.9e-06 Score=83.82 Aligned_cols=120 Identities=14% Similarity=0.225 Sum_probs=71.0
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhh
Q psy3395 29 QMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDR 108 (775)
Q Consensus 29 ~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 108 (775)
....+.|+|||+.++|||||+++|++..|.+... ..|.....
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~------------------------------------- 52 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE-PTKADSYR------------------------------------- 52 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC-TTCCEEEE-------------------------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CccceEEE-------------------------------------
Confidence 3556789999999999999999999877522211 11111000
Q ss_pred hcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hH
Q psy3395 109 ITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SD 186 (775)
Q Consensus 109 ~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~ 186 (775)
..+.+. .....+.|+|+||... .+.+...|+.+.+.+|+++...+.+ +.. ..
T Consensus 53 ------------~~~~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 106 (206)
T 2bov_A 53 ------------KKVVLD-GEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEMESFAATAD 106 (206)
T ss_dssp ------------EEEEET-TEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEEC-CEEEEEEEEcCCChhh-------------hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 001110 1123688999999532 1346778888888887766543321 101 11
Q ss_pred HHHHH-HhcCCCCCcceeccCCCCcccCCCC
Q psy3395 187 ALQIA-KQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 187 ~l~la-r~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+..+ +.....+...+.| +||.|+.+
T Consensus 107 ~~~~i~~~~~~~~~piilv----~nK~Dl~~ 133 (206)
T 2bov_A 107 FREQILRVKEDENVPFLLV----GNKSDLED 133 (206)
T ss_dssp HHHHHHHHTTCSCCCEEEE----EECTTCGG
T ss_pred HHHHHHHhcCCCCCCEEEE----EeccCccc
Confidence 22222 3334456778888 89999864
No 46
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.27 E-value=2.1e-06 Score=84.56 Aligned_cols=118 Identities=14% Similarity=0.249 Sum_probs=68.5
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
..+|+|+|+.++|||||+++|++..|.+....+.+. ..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~---~~--------------------------------------- 63 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV---DF--------------------------------------- 63 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTE---EE---------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccce---eE---------------------------------------
Confidence 346999999999999999999997752211111110 00
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~ 189 (775)
....+.+. .....++|+|+||... .+.+...|+.+.+.+|+++-..+.+ +.. ...+.
T Consensus 64 -------~~~~~~~~-~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~ 122 (192)
T 2il1_A 64 -------KIKTVELR-GKKIRLQIWDTAGQER-------------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMK 122 (192)
T ss_dssp -------EEEEEEET-TEEEEEEEEEECCSGG-------------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred -------EEEEEEEC-CeEEEEEEEeCCCcHH-------------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHH
Confidence 00011111 1123688999999432 2456788888888877765543321 111 22345
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.++...+.+...+.| +||.|+.+
T Consensus 123 ~i~~~~~~~~piilV----~NK~Dl~~ 145 (192)
T 2il1_A 123 MIDKYASEDAELLLV----GNKLDCET 145 (192)
T ss_dssp HHHHHSCTTCEEEEE----EECGGGGG
T ss_pred HHHHhcCCCCcEEEE----EECccccc
Confidence 566666666788888 89999864
No 47
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.26 E-value=2.3e-06 Score=82.55 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=68.3
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
...|+|||..++|||||+++|++..|.+... ..|.-. .+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~t~~~----------~~~----------------------------- 49 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGI----------DFR----------------------------- 49 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSC----------EEE-----------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCc-CCceee----------EEE-----------------------------
Confidence 4579999999999999999999987633211 111100 000
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~ 189 (775)
...+.+. .....++|+|+||... .+.+...|+.+.+++|+++...+.+ +.. ...+.
T Consensus 50 --------~~~~~~~-~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~ 107 (180)
T 2g6b_A 50 --------NKVLDVD-GVKVKLQMWDTAGQER-------------FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLT 107 (180)
T ss_dssp --------EEEEEET-TEEEEEEEEECCCC---------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred --------EEEEEEC-CEEEEEEEEeCCCcHH-------------HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 0001110 1123688999999432 2446778888888887766543321 111 22345
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.++...+.+...+.| +||.|+.++
T Consensus 108 ~i~~~~~~~~piilv----~nK~Dl~~~ 131 (180)
T 2g6b_A 108 EIHEYAQHDVALMLL----GNKVDSAHE 131 (180)
T ss_dssp HHHHHSCTTCEEEEE----EECCSTTSC
T ss_pred HHHHhCCCCCcEEEE----EECcccCcc
Confidence 555555556788888 999998753
No 48
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.25 E-value=3.6e-06 Score=79.50 Aligned_cols=116 Identities=19% Similarity=0.238 Sum_probs=67.8
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
-.|+|+|+.++|||||++++++..|.+...... ....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~------------------------------------------ 40 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFY------------------------------------------ 40 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTC-CEEE------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCCCCc-ceeE------------------------------------------
Confidence 369999999999999999999877632211110 0000
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-c-chHH-HH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-A-TSDA-LQ 189 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-~-~s~~-l~ 189 (775)
...+.+. .....+.|+|+||... .+.+...|+.+.+.+|+++...+.+- . .... ..
T Consensus 41 -------~~~~~~~-~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~ 99 (167)
T 1kao_A 41 -------RKEIEVD-SSPSVLEILDTAGTEQ-------------FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQ 99 (167)
T ss_dssp -------EEEEEET-TEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHH
T ss_pred -------EEEEEEC-CEEEEEEEEECCCchh-------------hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHH
Confidence 0001111 1123488999999532 13467788888888877665443211 0 0111 22
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+.+.....+...+.| +||.|+.+
T Consensus 100 i~~~~~~~~~piilv----~nK~Dl~~ 122 (167)
T 1kao_A 100 IIRVKRYEKVPVILV----GNKVDLES 122 (167)
T ss_dssp HHHHTTTSCCCEEEE----EECGGGGG
T ss_pred HHHhcCCCCCCEEEE----EECCcccc
Confidence 333344456778888 89999864
No 49
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.25 E-value=4.9e-06 Score=78.38 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=68.2
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
.+|+|+|..++||||++++|++..|.+..... +.....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~-~~~~~~----------------------------------------- 41 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPT-IEDSYR----------------------------------------- 41 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTT-CCEEEE-----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCc-cceEEE-----------------------------------------
Confidence 36999999999999999999988763221111 110000
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc---hHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT---SDALQ 189 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~---s~~l~ 189 (775)
..+.+. .....++++|+||.... +.+...|+...+.+|+++...+.+ .. ...+.
T Consensus 42 --------~~~~~~-~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~ 98 (166)
T 2ce2_X 42 --------KQVVID-GETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNTK-SFEDIHQYRE 98 (166)
T ss_dssp --------EEEEET-TEEEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHH
T ss_pred --------EEEEEC-CEEEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEEECCCHH-HHHHHHHHHH
Confidence 001111 11235789999995431 235667888888887766543321 11 12233
Q ss_pred HHHhc-CCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAKQV-DPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar~~-DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.++.. ...+...+.| +||.|+.+.
T Consensus 99 ~i~~~~~~~~~p~iiv----~nK~Dl~~~ 123 (166)
T 2ce2_X 99 QIKRVKDSDDVPMVLV----GNKSDLAAR 123 (166)
T ss_dssp HHHHHHTCSCCCEEEE----EECTTCSCC
T ss_pred HHHHhcCCCCCcEEEE----EEchhhhhc
Confidence 33332 3346778888 999998763
No 50
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.24 E-value=1.8e-06 Score=83.79 Aligned_cols=118 Identities=14% Similarity=0.235 Sum_probs=70.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
..+|+|+|+.++|||||+++|++..|.+......+.- . .
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~--~------------------------------------ 48 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVE---F--G------------------------------------ 48 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEE---E--E------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE---E--E------------------------------------
Confidence 4689999999999999999999887633221111100 0 0
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-cc-hHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-AT-SDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-~~-s~~l~ 189 (775)
...+.+. .....+.|+|+||... .+.+...|+.+.+.+|+++...+.+- .. ...+.
T Consensus 49 --------~~~~~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 106 (186)
T 2bme_A 49 --------SKIINVG-GKYVKLQIWDTAGQER-------------FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLT 106 (186)
T ss_dssp --------EEEEEET-TEEEEEEEEEECCSGG-------------GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred --------EEEEEEC-CEEEEEEEEeCCCcHH-------------HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHH
Confidence 0001110 0123578999999432 24577889998888877765443211 00 12333
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.++.....+...+.| .||.|+.+
T Consensus 107 ~~~~~~~~~~piilv----~nK~Dl~~ 129 (186)
T 2bme_A 107 DARMLASQNIVIILC----GNKKDLDA 129 (186)
T ss_dssp HHHHHSCTTCEEEEE----EECGGGGG
T ss_pred HHHHhcCCCCcEEEE----EECccccc
Confidence 344444456778888 89999853
No 51
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.24 E-value=3.9e-06 Score=79.55 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=41.3
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHH-HHhcCCCCCcceeccCCC
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQI-AKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~l-ar~~DP~g~RtigVdLPG 208 (775)
.+.|+|+||.... +.+...|+.+.+.+|+++...+.+ +.. ...+.. .+.....+...+.|
T Consensus 52 ~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv---- 114 (167)
T 1c1y_A 52 MLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILV---- 114 (167)
T ss_dssp EEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEE----
T ss_pred EEEEEECCChHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEE----
Confidence 5889999996432 225667888888887766543321 111 122222 23234456778888
Q ss_pred CcccCCCC
Q psy3395 209 MTKVPIGD 216 (775)
Q Consensus 209 lTK~D~~~ 216 (775)
+||.|+.+
T Consensus 115 ~nK~Dl~~ 122 (167)
T 1c1y_A 115 GNKCDLED 122 (167)
T ss_dssp EECTTCGG
T ss_pred EECccccc
Confidence 89999864
No 52
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.24 E-value=1.9e-06 Score=81.83 Aligned_cols=117 Identities=13% Similarity=0.239 Sum_probs=67.9
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
..|+|+|..++|||||+++|++..|.+....+.+.- .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~---~---------------------------------------- 40 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA---F---------------------------------------- 40 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE---E----------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee---E----------------------------------------
Confidence 369999999999999999999887633221111100 0
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH---HH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA---LQ 189 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~---l~ 189 (775)
....+.+. .....++++|+||... .+.+...|+++.+.+|+++...+. ....++ +.
T Consensus 41 ------~~~~~~~~-~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~ 99 (170)
T 1ek0_A 41 ------LTQRVTIN-EHTVKFEIWDTAGQER-------------FASLAPXYYRNAQAALVVYDVTKP-QSFIKARHWVK 99 (170)
T ss_dssp ------EEEEEEET-TEEEEEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEEEETTCH-HHHHHHHHHHH
T ss_pred ------EEEEEEEC-CEEEEEEEEECCCChh-------------hhhhhhhhhccCcEEEEEEecCCh-HHHHHHHHHHH
Confidence 00011110 1123588999999432 133677888888887776644332 111122 23
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
......+.+...+.| +||.|+.+.
T Consensus 100 ~~~~~~~~~~piilv----~nK~Dl~~~ 123 (170)
T 1ek0_A 100 ELHEQASKDIIIALV----GNKIDXLQE 123 (170)
T ss_dssp HHHHHSCTTCEEEEE----EECGGGGGS
T ss_pred HHHHhcCCCCcEEEE----EECCCcccc
Confidence 333333345677888 899998653
No 53
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.24 E-value=1.3e-06 Score=87.60 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=43.0
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~l~lar~~DP~g~RtigVdLPG 208 (775)
..+.|+|+||..... .+...|+.+.+++|+++...+..- .....+..++...+.+...+.|
T Consensus 61 ~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv---- 123 (218)
T 4djt_A 61 IKFNVWDTAGQEKKA-------------VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVC---- 123 (218)
T ss_dssp EEEEEEEECSGGGTS-------------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEE----
T ss_pred EEEEEEecCCchhhc-------------hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEE----
Confidence 358899999964321 244567778887777655443211 1122345555555566788999
Q ss_pred CcccCCCCC
Q psy3395 209 MTKVPIGDQ 217 (775)
Q Consensus 209 lTK~D~~~~ 217 (775)
+||+|+.+.
T Consensus 124 ~nK~Dl~~~ 132 (218)
T 4djt_A 124 ANKIDIKNR 132 (218)
T ss_dssp EECTTCC--
T ss_pred EECCCCccc
Confidence 999999764
No 54
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.24 E-value=2.3e-06 Score=82.33 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
..+.|+|||+.++|||||+++|+|..|.+... ..|+....-
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~-------------------------------------- 48 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTK-------------------------------------- 48 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCC-TTCCEEEEE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCccccC-CCcCceEEE--------------------------------------
Confidence 45689999999999999999999986532111 111111000
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDAL 188 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l 188 (775)
.+.+. .....+.|+|+||.... +.+...|+.+.+++|+++...+.+ +.. ...+
T Consensus 49 -----------~~~~~-~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 103 (181)
T 2fn4_A 49 -----------ICSVD-GIPARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLF 103 (181)
T ss_dssp -----------EEEET-TEEEEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHH
T ss_pred -----------EEEEC-CEEEEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHH
Confidence 00010 01235789999996432 224567788888877766433311 110 1112
Q ss_pred -HHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 189 -QIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 189 -~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+.+...+.+...+.| +||.|+.+
T Consensus 104 ~~~~~~~~~~~~piilv----~nK~Dl~~ 128 (181)
T 2fn4_A 104 TQILRVKDRDDFPVVLV----GNKADLES 128 (181)
T ss_dssp HHHHHHHTSSCCCEEEE----EECGGGGG
T ss_pred HHHHHhcCCCCCCEEEE----EECccccc
Confidence 2334445566788888 89999864
No 55
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.23 E-value=1e-06 Score=84.09 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.+|+|+|+.++|||||+++|++..|
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~ 31 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKF 31 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC
Confidence 5799999999999999999998876
No 56
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.23 E-value=4.9e-06 Score=94.50 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=57.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
.|++||..++||||||++|+|..+...+. ...||-..
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~------------------------------------------ 272 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI------------------------------------------ 272 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC------------------------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEE------------------------------------------
Confidence 59999999999999999999975321111 11121100
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch---HHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS---DALQ 189 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s---~~l~ 189 (775)
.-.+.+. -..++|+|+||+.... ..++..--.....|+.+.+.++++ +.++...... ....
T Consensus 273 -------~~~i~~~---g~~l~liDT~G~~~~~-----~~ve~~gi~~~~~~~~~aD~vl~V-vD~s~~~s~~~~~~~~~ 336 (476)
T 3gee_A 273 -------EECFIHD---KTMFRLTDTAGLREAG-----EEIEHEGIRRSRMKMAEADLILYL-LDLGTERLDDELTEIRE 336 (476)
T ss_dssp -------CEEEEET---TEEEEEEC-------------------------CCCSSCSEEEEE-EETTTCSSGGGHHHHHH
T ss_pred -------EEEEEEC---CeEEEEEECCCCCcch-----hHHHHHHHHHHHhhcccCCEEEEE-EECCCCcchhhhHHHHH
Confidence 0112221 2368999999985421 111111112345577777766555 4444433221 3445
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCCh
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQP 218 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~~ 218 (775)
+.+.+. +...+.| +||+|+.+..
T Consensus 337 ~l~~l~--~~piIvV----~NK~Dl~~~~ 359 (476)
T 3gee_A 337 LKAAHP--AAKFLTV----ANKLDRAANA 359 (476)
T ss_dssp HHHHCT--TSEEEEE----EECTTSCTTT
T ss_pred HHHhcC--CCCEEEE----EECcCCCCcc
Confidence 555554 5788899 9999998653
No 57
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.23 E-value=1.3e-06 Score=83.33 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=68.0
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
-..|+|+|+.++|||||+++|++..|... ..|.-
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~------------------------------------------- 40 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVTT---IPTIG------------------------------------------- 40 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCC---CCCSS-------------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCc---CCcCc-------------------------------------------
Confidence 46799999999999999999988765211 11110
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--HHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--DAL 188 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~~l 188 (775)
+. .-.+.+. ...+.++|+||.... +.+...|+.+.+.+|+++-..+.+ +... ...
T Consensus 41 ----~~--~~~~~~~---~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~ 98 (171)
T 1upt_A 41 ----FN--VETVTYK---NLKFQVWDLGGLTSI-------------RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELV 98 (171)
T ss_dssp ----EE--EEEEEET---TEEEEEEEECCCGGG-------------GGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHH
T ss_pred ----cc--eEEEEEC---CEEEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00 0011111 346889999996431 235567888888777766544332 2111 122
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+.+.....+...+.| +||.|+.+.
T Consensus 99 ~~~~~~~~~~~piilv----~nK~Dl~~~ 123 (171)
T 1upt_A 99 AMLEEEELRKAILVVF----ANKQDMEQA 123 (171)
T ss_dssp HHHTCGGGTTCEEEEE----EECTTSTTC
T ss_pred HHHhchhhCCCEEEEE----EECCCCcCC
Confidence 2333323345678888 899999764
No 58
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.23 E-value=9.8e-07 Score=85.05 Aligned_cols=27 Identities=19% Similarity=0.640 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
....|+|+|..++|||||+++|++..|
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 33 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKY 33 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcC
Confidence 346899999999999999999998776
No 59
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.22 E-value=5.7e-06 Score=80.22 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=67.1
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
.+|+|+|..++|||||+++|+|..|.+...++ |.-....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-~~~~~~~---------------------------------------- 43 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPT-IEDSYRK---------------------------------------- 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCCCTT-CCEEEEE----------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-chheEEE----------------------------------------
Confidence 36999999999999999999988763322211 1100000
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~l~l 190 (775)
.+.+ ......+.|+|+||... .+.+...|+...+.+|+++...+.+- .....+..
T Consensus 44 ---------~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~ 100 (189)
T 4dsu_A 44 ---------QVVI-DGETCLLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQ 100 (189)
T ss_dssp ---------EEEE-TTEEEEEEEEECCCC----------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHH
T ss_pred ---------EEEE-CCcEEEEEEEECCCcHH-------------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 0000 01123577999999532 23366778888888877665443211 01112222
Q ss_pred H-HhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 A-KQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 a-r~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
. +.....+...+.| +||.|+.+.
T Consensus 101 ~~~~~~~~~~p~i~v----~nK~Dl~~~ 124 (189)
T 4dsu_A 101 IKRVKDSEDVPMVLV----GNKCDLPSR 124 (189)
T ss_dssp HHHHTTCSCCCEEEE----EECTTSSSC
T ss_pred HHHhcCCCCCcEEEE----EECccCccc
Confidence 2 2234456678888 899998743
No 60
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.22 E-value=4e-06 Score=87.50 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
-+.|++||..++|||||+++|+|..+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~ 30 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQ 30 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC
Confidence 35799999999999999999999775
No 61
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.22 E-value=7.3e-06 Score=79.40 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.+|++||..++|||||+++|+|..+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3699999999999999999999764
No 62
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.20 E-value=5.2e-06 Score=79.74 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.++|+|+|..++|||||+++|++..|
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~ 32 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKF 32 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46799999999999999999998775
No 63
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.20 E-value=2.3e-06 Score=81.37 Aligned_cols=117 Identities=12% Similarity=0.094 Sum_probs=54.8
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
..+|+|||+.++|||||+++|+|..+-+......|-+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 39 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD------------------------------------------ 39 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE------------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE------------------------------------------
Confidence 46799999999999999999998764222211111000
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-cc-hHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-AT-SDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-~~-s~~l~ 189 (775)
..+.+. .....+.++|+||... .+.+...|+...+++|+++...+.+- .. ...+.
T Consensus 40 ---------~~~~~~-~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 96 (166)
T 3q72_A 40 ---------RSIVVD-GEEASLMVYDIWEQDG-------------GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 96 (166)
T ss_dssp ---------EEEEET-TEEEEEEEEECC----------------------------CCEEEEEEETTCHHHHHHHHHHHH
T ss_pred ---------EEEEEC-CEEEEEEEEECCCCcc-------------chhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHH
Confidence 000111 1123577999999532 24466778888888877765443221 11 11122
Q ss_pred HHH-hcCCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAK-QVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar-~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
... .....+...+.| .||.|+.+.
T Consensus 97 ~~~~~~~~~~~p~ilv----~nK~Dl~~~ 121 (166)
T 3q72_A 97 QLRRARQTDDVPIILV----GNKSDLVRS 121 (166)
T ss_dssp HHHHCC---CCCEEEE----EECTTCCSS
T ss_pred HHHHhcCCCCCCEEEE----Eeccccccc
Confidence 222 223345677888 899998753
No 64
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.20 E-value=3.1e-06 Score=83.04 Aligned_cols=118 Identities=12% Similarity=0.222 Sum_probs=69.6
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
...|+|||..++|||||+++|++..|.+......+ +...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~---~~~~-------------------------------------- 63 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG---VEFS-------------------------------------- 63 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSS---EEEE--------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc---eeEE--------------------------------------
Confidence 46799999999999999999999876322211100 0000
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~l~ 189 (775)
...+.+ ......++|+|+||.... +.+...|+.+.+.+|+++-..+..- .....+.
T Consensus 64 --------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~ 121 (193)
T 2oil_A 64 --------TRTVML-GTAAVKAQIWDTAGLERY-------------RAITSAYYRGAVGALLVFDLTKHQTYAVVERWLK 121 (193)
T ss_dssp --------EEEEEE-TTEEEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHH
T ss_pred --------EEEEEE-CCEEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHH
Confidence 000111 111235889999997432 2356778888887777654433211 0112344
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+......+...+.| +||.|+.+
T Consensus 122 ~i~~~~~~~~piilv----~nK~Dl~~ 144 (193)
T 2oil_A 122 ELYDHAEATIVVMLV----GNKSDLSQ 144 (193)
T ss_dssp HHHTTSCTTCEEEEE----EECGGGGG
T ss_pred HHHHhcCCCCeEEEE----EECCCccc
Confidence 444444455678888 89999864
No 65
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.20 E-value=4.1e-06 Score=79.38 Aligned_cols=111 Identities=18% Similarity=0.241 Sum_probs=67.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
+|+|+|+.++|||||++++++..| +.. ..|.-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~-~~~--~~t~~--------------------------------------------- 33 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIG--------------------------------------------- 33 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS-SCC--CCCSS---------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc-Ccc--cCcCc---------------------------------------------
Confidence 699999999999999999998765 211 11110
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHH---
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQI--- 190 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~l--- 190 (775)
+. .-.+.. ....+.|+|+||... .+.+...|+.+.+++|+++...+.+ .-..+...
T Consensus 34 --~~--~~~~~~---~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~ 92 (164)
T 1r8s_A 34 --FN--VETVEY---KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRE-RVNEAREELMR 92 (164)
T ss_dssp --CC--EEEEEC---SSCEEEEEECCCCGG-------------GHHHHHHHTTTCSEEEEEEETTCGG-GHHHHHHHHHH
T ss_pred --ee--EEEEEE---CCEEEEEEEcCCChh-------------hHHHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHH
Confidence 00 001111 124688999999632 2457788999998887765543321 11222222
Q ss_pred -HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 -AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 -ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+.....+...+.| .||.|+.+.
T Consensus 93 ~~~~~~~~~~piilv----~nK~Dl~~~ 116 (164)
T 1r8s_A 93 MLAEDELRDAVLLVF----ANKQDLPNA 116 (164)
T ss_dssp HHTCGGGTTCEEEEE----EECTTSTTC
T ss_pred HHhchhhcCCeEEEE----EECcCCcCC
Confidence 22222335678888 899999754
No 66
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.19 E-value=5.6e-06 Score=80.99 Aligned_cols=119 Identities=14% Similarity=0.238 Sum_probs=70.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
...+|+|||..++|||||+++|++..|.+......+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~------------------------------------------- 55 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV------------------------------------------- 55 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC-------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce-------------------------------------------
Confidence 4568999999999999999999987763221111100
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHH-HHHHHHhhccccEEEEEecCCCC-c-cchHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIK-DMLFQFITKETCLILAVTPANTD-L-ATSDA 187 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~-~lv~~yi~~~~~iILaV~~a~~d-~-~~s~~ 187 (775)
.+ ....+.+. .....++|+|+||.. ..+ .+...|+++.+.+|+++-..+.+ + .....
T Consensus 56 ----~~--~~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~ 115 (189)
T 1z06_A 56 ----DF--RERAVDID-GERIKIQLWDTAGQE-------------RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAW 115 (189)
T ss_dssp ----CE--EEEEEEET-TEEEEEEEEECCCSH-------------HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHH
T ss_pred ----EE--EEEEEEEC-CEEEEEEEEECCCch-------------hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHH
Confidence 00 00011111 112368899999942 233 57888999888877766543321 0 11122
Q ss_pred HHHH-HhcCCCCCcceeccCCCCcccCCCC
Q psy3395 188 LQIA-KQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 188 l~la-r~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+..+ +.....+...+.| +||+|+.+
T Consensus 116 ~~~i~~~~~~~~~piilv----~nK~Dl~~ 141 (189)
T 1z06_A 116 IEECKQHLLANDIPRILV----GNKCDLRS 141 (189)
T ss_dssp HHHHHHHCCCSCCCEEEE----EECTTCGG
T ss_pred HHHHHHhcCCCCCCEEEE----EECccccc
Confidence 2333 3333456778888 89999864
No 67
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.19 E-value=4.8e-06 Score=81.33 Aligned_cols=118 Identities=18% Similarity=0.235 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
..-..|+|||..++|||||+++|++..|.+...+ .|.....
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~-------------------------------------- 59 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP-TIEDSYR-------------------------------------- 59 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCT-TCCEEEE--------------------------------------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCC-ccceEEE--------------------------------------
Confidence 3445799999999999999999998776322111 1110000
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH---
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--- 186 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--- 186 (775)
..+.+. .....++|+|+||... ...+...|+...+.+|+++...+.+ ...+
T Consensus 60 -----------~~~~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~ 113 (190)
T 3con_A 60 -----------KQVVID-GETCLLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCVFAINNSK-SFADINL 113 (190)
T ss_dssp -----------EEEEET-TEEEEEEEEECCC------------------------CTTCSEEEEEEETTCHH-HHHHHHH
T ss_pred -----------EEEEEC-CEEEEEEEEECCChHH-------------HHHHHHHhhCcCCEEEEEEECcCHH-HHHHHHH
Confidence 001111 1123588999999432 2446778888888887665543321 1112
Q ss_pred HHHHHHhc-CCCCCcceeccCCCCcccCCCC
Q psy3395 187 ALQIAKQV-DPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 187 ~l~lar~~-DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+..++.. ...+...+.| +||+|+.+
T Consensus 114 ~~~~i~~~~~~~~~p~ilv----~nK~Dl~~ 140 (190)
T 3con_A 114 YREQIKRVKDSDDVPMVLV----GNKCDLPT 140 (190)
T ss_dssp HHHHHHHHHTCSCCCEEEE----EECTTCSC
T ss_pred HHHHHHHHhCCCCCeEEEE----EECCcCCc
Confidence 23333332 2345678888 89999875
No 68
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.19 E-value=4.1e-06 Score=81.90 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFL 58 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~fl 58 (775)
...+|+|+|..++|||||+++|+|..|.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~ 33 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH 33 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC
Confidence 3568999999999999999999998864
No 69
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.18 E-value=4.3e-06 Score=79.56 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.+|+|+|..++|||||+++|+|..|
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~ 28 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTF 28 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4699999999999999999999765
No 70
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.18 E-value=2.9e-06 Score=83.48 Aligned_cols=117 Identities=15% Similarity=0.226 Sum_probs=70.2
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
..+|+|||+.++|||||+++|++..|.+.-.. |- ....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--~~-~~~~--------------------------------------- 60 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISP--TI-GASF--------------------------------------- 60 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCC--CS-SEEE---------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCC--Cc-ceeE---------------------------------------
Confidence 45799999999999999999999875211110 00 0000
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc---hHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT---SDAL 188 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~---s~~l 188 (775)
....+.+ ......+.|+|+||... .+.+...|+.+.+++|+++...+.+ .. ...+
T Consensus 61 -------~~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~d~~~~~-s~~~~~~~~ 118 (192)
T 2fg5_A 61 -------MTKTVPC-GNELHKFLIWDTAGQER-------------FHSLAPMYYRGSAAAVIVYDITKQD-SFYTLKKWV 118 (192)
T ss_dssp -------EEEEEEC-SSSEEEEEEEEECCSGG-------------GGGGTHHHHTTCSEEEEEEETTCTH-HHHHHHHHH
T ss_pred -------EEEEEEe-CCEEEEEEEEcCCCchh-------------hHhhhHHhhccCCEEEEEEeCCCHH-HHHHHHHHH
Confidence 0000011 01223678999999532 1235677888888777766543322 11 2234
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
..+++..+.+...+.| +||.|+.+
T Consensus 119 ~~i~~~~~~~~piiiv----~NK~Dl~~ 142 (192)
T 2fg5_A 119 KELKEHGPENIVMAIA----GNKCDLSD 142 (192)
T ss_dssp HHHHHHSCTTCEEEEE----EECGGGGG
T ss_pred HHHHHhCCCCCcEEEE----EECccccc
Confidence 4455555566788889 99999864
No 71
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.17 E-value=4.9e-06 Score=82.30 Aligned_cols=118 Identities=18% Similarity=0.240 Sum_probs=68.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
....|+|||+.++|||||+++|++..|.+....+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------------------------------------- 61 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL--------------------------------------------- 61 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCc---------------------------------------------
Confidence 45789999999999999999999887521110000
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDAL 188 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l 188 (775)
| ..-....+.+. .....++|+|+||... .+.+...|+.+.+++|+++...+.+ +.+ ...+
T Consensus 62 ~----~~~~~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~ 123 (199)
T 2p5s_A 62 G----VDFQMKTLIVD-GERTVLQLWDTAGQER-------------FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWV 123 (199)
T ss_dssp -------CEEEEEEET-TEEEEEEEEECTTCTT-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHH
T ss_pred c----ceeEEEEEEEC-CEEEEEEEEECCCCcc-------------hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHH
Confidence 0 00000111111 1123588999999532 2446788888888887766543321 111 2234
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIG 215 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~ 215 (775)
..++...+.+...+.| +||.|+.
T Consensus 124 ~~i~~~~~~~~piilv----~NK~Dl~ 146 (199)
T 2p5s_A 124 DMIEDAAHETVPIMLV----GNKADIR 146 (199)
T ss_dssp HHHHHHC---CCEEEE----EECGGGH
T ss_pred HHHHHhcCCCCCEEEE----EECcccc
Confidence 4455554456678888 8999985
No 72
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.16 E-value=2.8e-05 Score=84.85 Aligned_cols=28 Identities=21% Similarity=0.542 Sum_probs=25.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
...+.|+|||..++|||||+++|+|..+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~ 192 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP 192 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999999763
No 73
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.16 E-value=8.4e-06 Score=79.84 Aligned_cols=113 Identities=14% Similarity=0.210 Sum_probs=68.0
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
.+|+|||..++|||||+++|++..|.+ .. ..|-.. .
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~-~~t~~~---~--------------------------------------- 58 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNE-DM-IPTVGF---N--------------------------------------- 58 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCC-SC-CCCCSE---E---------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCC-cc-CCCCce---e---------------------------------------
Confidence 469999999999999999999877521 11 011000 0
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH----H
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA----L 188 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~----l 188 (775)
...+. -....+.|+|+||.. ..+.+...|+.+.+++|+++-..+.+ .-..+ .
T Consensus 59 -------~~~~~---~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~ 114 (188)
T 1zd9_A 59 -------MRKIT---KGNVTIKLWDIGGQP-------------RFRSMWERYCRGVSAIVYMVDAADQE-KIEASKNELH 114 (188)
T ss_dssp -------EEEEE---ETTEEEEEEEECCSH-------------HHHTTHHHHHTTCSEEEEEEETTCGG-GHHHHHHHHH
T ss_pred -------EEEEE---eCCEEEEEEECCCCH-------------hHHHHHHHHHccCCEEEEEEECCCHH-HHHHHHHHHH
Confidence 00000 012467899999942 24557788998888887766543321 11222 2
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+.+.....+...+.| +||.|+.+.
T Consensus 115 ~~~~~~~~~~~piilv----~NK~Dl~~~ 139 (188)
T 1zd9_A 115 NLLDKPQLQGIPVLVL----GNKRDLPGA 139 (188)
T ss_dssp HHHTCGGGTTCCEEEE----EECTTSTTC
T ss_pred HHHhCcccCCCCEEEE----EECCCCccC
Confidence 2222222345678888 899999754
No 74
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.15 E-value=5.2e-06 Score=80.65 Aligned_cols=69 Identities=14% Similarity=0.256 Sum_probs=42.4
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHHHHhcCC-CCCcceeccCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQIAKQVDP-DVLNLTLVDLP 207 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~lar~~DP-~g~RtigVdLP 207 (775)
..+.|+|+||... .+.+...|+.+.+.+|+++-..+.+ +.. ...+..++.... .+...+.|
T Consensus 70 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv--- 133 (195)
T 3bc1_A 70 IHLQLWDTAGLER-------------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLC--- 133 (195)
T ss_dssp EEEEEEEECCSGG-------------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEE---
T ss_pred EEEEEEeCCCcHH-------------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE---
Confidence 3688999999632 3457888999988887766543321 111 122333333222 45677888
Q ss_pred CCcccCCCC
Q psy3395 208 GMTKVPIGD 216 (775)
Q Consensus 208 GlTK~D~~~ 216 (775)
+||.|+.+
T Consensus 134 -~nK~Dl~~ 141 (195)
T 3bc1_A 134 -GNKSDLED 141 (195)
T ss_dssp -EECTTCGG
T ss_pred -EECccccc
Confidence 89999864
No 75
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.15 E-value=5.9e-06 Score=79.63 Aligned_cols=118 Identities=15% Similarity=0.213 Sum_probs=68.5
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
..+|+|||..++|||||+++|++..|.+......+. .
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~------------------------------------------ 48 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA-A------------------------------------------ 48 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCC-S------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCcee-E------------------------------------------
Confidence 457999999999999999999988763221111000 0
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch---HHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS---DAL 188 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s---~~l 188 (775)
+ ....+.+. .....+.|+|+||... .+.+...|+.+.+.+|+++- ++....-. ..+
T Consensus 49 ----~--~~~~~~~~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~ 107 (181)
T 2efe_B 49 ----F--FSQTLAVN-DATVKFEIWDTAGQER-------------YHSLAPMYYRGAAAAIIVFD-VTNQASFERAKKWV 107 (181)
T ss_dssp ----E--EEEEEEET-TEEEEEEEEECCCSGG-------------GGGGTHHHHTTCSEEEEEEE-TTCHHHHHHHHHHH
T ss_pred ----E--EEEEEEEC-CEEEEEEEEeCCCChh-------------hhhhhHHHhccCCEEEEEEE-CCCHHHHHHHHHHH
Confidence 0 00001110 1123688999999532 23356778888887777654 33221111 223
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
..++.....+...+.| +||.|+.+.
T Consensus 108 ~~~~~~~~~~~p~i~v----~nK~Dl~~~ 132 (181)
T 2efe_B 108 QELQAQGNPNMVMALA----GNKSDLLDA 132 (181)
T ss_dssp HHHHHHSCTTCEEEEE----EECTTCTTT
T ss_pred HHHHHhcCCCCcEEEE----EECCccccc
Confidence 3344433335678888 899999753
No 76
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.15 E-value=1.1e-05 Score=78.18 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.....|+|||+.++|||||+++|++..|
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~ 43 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIF 43 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4445789999999999999999998765
No 77
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.15 E-value=5.1e-06 Score=82.47 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
...|+|||+.++|||||+++|+|..|
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~ 33 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTY 33 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45799999999999999999999876
No 78
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.15 E-value=6.9e-06 Score=78.76 Aligned_cols=25 Identities=28% Similarity=0.643 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+.|++||+.++|||||+++|+|..+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 5799999999999999999999765
No 79
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.14 E-value=3.4e-06 Score=88.38 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..+.|+++|..++|||||+++|+|..+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 467899999999999999999999875
No 80
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.14 E-value=5.5e-06 Score=81.03 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=69.4
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
..+|+|||..++|||||+++|+|..|.+......+ +...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~---~~~~-------------------------------------- 60 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG---IDFK-------------------------------------- 60 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCC---CEEE--------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcee---EEEE--------------------------------------
Confidence 35799999999999999999999876332111100 0000
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-cc-chHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LA-TSDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~-~s~~l~ 189 (775)
...+.+. .....+.|+|+||.... +.+...|+.+.+.+|+++...+.+ +. ....+.
T Consensus 61 --------~~~~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~ 118 (189)
T 2gf9_A 61 --------VKTVYRH-DKRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFLLMYDIANQESFAAVQDWAT 118 (189)
T ss_dssp --------EEEEEET-TEEEEEEEEECCSCCSS-------------CCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred --------EEEEEEC-CeEEEEEEEeCCCcHHH-------------hhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 0001110 11235789999996432 124567888888777765543321 11 112344
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.++...+.+...+.| +||.|+.+
T Consensus 119 ~i~~~~~~~~piilv----~nK~Dl~~ 141 (189)
T 2gf9_A 119 QIKTYSWDNAQVILV----GNKCDLED 141 (189)
T ss_dssp HHHHHSCTTCEEEEE----EECTTCGG
T ss_pred HHHHhcCCCCCEEEE----EECccccc
Confidence 455554556778888 89999864
No 81
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.14 E-value=3.2e-06 Score=81.32 Aligned_cols=27 Identities=33% Similarity=0.609 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..++|+|+|..++|||||+++|+|..|
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~ 34 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTF 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC-
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467899999999999999999999876
No 82
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.14 E-value=2.7e-06 Score=83.53 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
...+|+|+|+.++|||||+++|+|..|.+......+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 57 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG-------------------------------------------- 57 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEET--------------------------------------------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCee--------------------------------------------
Confidence 346799999999999999999998775221110000
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-c-cchHHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-L-ATSDAL 188 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~-~~s~~l 188 (775)
.......+.+.+ ....+.|+|+||. +..+.+...|+.+.+.+|+++-..+.+ + .....+
T Consensus 58 -----~~~~~~~~~~~~-~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 118 (191)
T 3dz8_A 58 -----IDFKVKTVYRHE-KRVKLQIWDTAGQ-------------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWA 118 (191)
T ss_dssp -----TTEEEEEEEETT-TTEEEEEECHHHH-------------HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHH
T ss_pred -----eEEEEEEEEECC-EEEEEEEEeCCCh-------------HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHH
Confidence 000001111111 1235889999993 234567889999998887766543321 1 112345
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
..++...+.+...+.| .||.|+.+
T Consensus 119 ~~i~~~~~~~~piilv----~nK~Dl~~ 142 (191)
T 3dz8_A 119 TQIKTYSWDNAQVILV----GNKCDMEE 142 (191)
T ss_dssp HHHHHHSCTTCEEEEE----EECTTCGG
T ss_pred HHHHHhcCCCCCEEEE----EECCCCcc
Confidence 5555556566788888 89999853
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.13 E-value=3.6e-06 Score=82.47 Aligned_cols=27 Identities=11% Similarity=0.318 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
-.-.+|+|||..++|||||+++|+|..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999999976
No 84
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.13 E-value=5.1e-06 Score=81.50 Aligned_cols=118 Identities=14% Similarity=0.231 Sum_probs=68.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
...|+|||+.++|||||+++|++..|.+......+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-------------------------------------------- 56 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV-------------------------------------------- 56 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCS--------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccc--------------------------------------------
Confidence 346999999999999999999987763221111000
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~ 189 (775)
.+ ....+.+.+ ....++|+|+||.... +.+...|+.+.+.+|+++-..+.+ +.. ...+.
T Consensus 57 ---~~--~~~~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~ 117 (191)
T 2a5j_A 57 ---EF--GARMVNIDG-KQIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLTSWLE 117 (191)
T ss_dssp ---SE--EEEEEEETT-EEEEEEEECCTTGGGT-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred ---ee--EEEEEEECC-EEEEEEEEECCCchhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00 000111111 1236889999995331 224567888888887766544322 111 22344
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.++...+.+...+.| +||.|+.+
T Consensus 118 ~i~~~~~~~~piilv----~nK~Dl~~ 140 (191)
T 2a5j_A 118 DARQHSSSNMVIMLI----GNKSDLES 140 (191)
T ss_dssp HHHHHSCTTCEEEEE----EECTTCGG
T ss_pred HHHHhcCCCCCEEEE----EECcccCC
Confidence 444444456678888 89999864
No 85
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.13 E-value=5.3e-06 Score=83.04 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
...|+|||+.++||||||++|++..|
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 45799999999999999999999876
No 86
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.12 E-value=3.6e-06 Score=83.55 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
..+|+|+|+.++|||||+++|++..|.+....+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~-------------------------------------------- 60 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV-------------------------------------------- 60 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------C--------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccc--------------------------------------------
Confidence 467999999999999999999987763211111000
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-cc-chHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LA-TSDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~-~s~~l~ 189 (775)
.+. ...+.+. .....+.|+|+||.. ..+.+...|+.+.+.+|+++-..+.+ +. ....+.
T Consensus 61 ---~~~--~~~~~~~-~~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 121 (200)
T 2o52_A 61 ---EFG--SRVVNVG-GKTVKLQIWDTAGQE-------------RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLT 121 (200)
T ss_dssp ---CEE--EEEEEET-TEEEEEEEECCTTHH-------------HHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred ---eeE--EEEEEEC-CeeeEEEEEcCCCcH-------------hHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHH
Confidence 000 0011111 112468899999942 22345677888888887766544321 11 112233
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.++.....+...+.| +||.|+.+
T Consensus 122 ~~~~~~~~~~piilv----~nK~Dl~~ 144 (200)
T 2o52_A 122 DARTLASPNIVVILC----GNKKDLDP 144 (200)
T ss_dssp HHHHHTCTTCEEEEE----EECGGGGG
T ss_pred HHHHhcCCCCcEEEE----EECCCccc
Confidence 344434445678888 89999853
No 87
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.11 E-value=8.4e-06 Score=85.82 Aligned_cols=26 Identities=27% Similarity=0.612 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.+.|++||..++|||||+++|+|..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~ 28 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ 28 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC
Confidence 46799999999999999999999764
No 88
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.11 E-value=3.6e-06 Score=91.60 Aligned_cols=125 Identities=17% Similarity=0.173 Sum_probs=70.2
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
+|.|++||..+|||||||++|++..+...+.-..|..|..-
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--------------------------------------- 198 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--------------------------------------- 198 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE---------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE---------------------------------------
Confidence 68899999999999999999998653111111223322110
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCC---CCc-cc-hH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPAN---TDL-AT-SD 186 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~---~d~-~~-s~ 186 (775)
. +.-++...++|+|+||+...+.... .+ .....+++...+.+|++|-..+ .+. .. ..
T Consensus 199 ----------~--v~~~~~~~~~l~DtPG~i~~a~~~~--~l----~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~ 260 (342)
T 1lnz_A 199 ----------M--VETDDGRSFVMADLPGLIEGAHQGV--GL----GHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLT 260 (342)
T ss_dssp ----------E--EECSSSCEEEEEEHHHHHHHTTCTT--TT----HHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHH
T ss_pred ----------E--EEeCCCceEEEecCCCCcccccccc--hh----HHHHHHHHHhccEEEEEEECCcccccChHHHHHH
Confidence 0 1112224689999999865322111 11 1112334455666666554443 221 11 12
Q ss_pred HHHHHHhcCC--CCCcceeccCCCCcccCCCCC
Q psy3395 187 ALQIAKQVDP--DVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 187 ~l~lar~~DP--~g~RtigVdLPGlTK~D~~~~ 217 (775)
++...+.++| .....+.| +||+|+.+.
T Consensus 261 ~~~eL~~~~~~l~~~p~ilV----~NK~Dl~~~ 289 (342)
T 1lnz_A 261 INQELSEYNLRLTERPQIIV----ANKMDMPEA 289 (342)
T ss_dssp HHHHHHHSCSSTTTSCBCBE----EECTTSTTH
T ss_pred HHHHHHHhhhhhcCCCEEEE----EECccCCCC
Confidence 3455566665 35677888 899999753
No 89
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.10 E-value=5.5e-06 Score=78.60 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.+|+|+|..++|||||+++|++..|
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC
Confidence 5799999999999999999998765
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.09 E-value=7.2e-06 Score=80.02 Aligned_cols=113 Identities=16% Similarity=0.236 Sum_probs=67.2
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
-..|+|||+.++|||||+++|++..|... ..|. |
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~-------------------------------------------~ 49 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHT---SPTI-------------------------------------------G 49 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEE---ECCS-------------------------------------------C
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcC---cCCC-------------------------------------------c
Confidence 46899999999999999999998765210 0010 0
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH----
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA---- 187 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~---- 187 (775)
+. .-.+.+. -..+.|+|+||..+ .+.+...|+.+.+.+|+++-..+.+ .-..+
T Consensus 50 ----~~--~~~~~~~---~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~ 106 (187)
T 1zj6_A 50 ----SN--VEEIVIN---NTRFLMWDIGGQES-------------LRSSWNTYYTNTEFVIVVVDSTDRE-RISVTREEL 106 (187)
T ss_dssp ----SS--CEEEEET---TEEEEEEECCC-----------------CGGGHHHHTTCCEEEEEEETTCTT-THHHHHHHH
T ss_pred ----cc--eEEEEEC---CEEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHH
Confidence 00 0111221 25688999999743 2235677888888877766544332 11222
Q ss_pred HHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 188 l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
..+.+.....+...+.| +||.|+.+.
T Consensus 107 ~~~~~~~~~~~~piilv----~NK~Dl~~~ 132 (187)
T 1zj6_A 107 YKMLAHEDLRKAGLLIF----ANKQDVKEC 132 (187)
T ss_dssp HHHHTSGGGTTCEEEEE----EECTTSTTC
T ss_pred HHHHhchhhCCCeEEEE----EECCCCcCC
Confidence 22222222346788899 999999753
No 91
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.09 E-value=1.1e-05 Score=91.06 Aligned_cols=125 Identities=15% Similarity=0.223 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDR 108 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 108 (775)
-..+.|++||+.++|||||+++|+|......+.- ..|+-+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~--------------------------------------- 233 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA--------------------------------------- 233 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CT---------------------------------------
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEE---------------------------------------
Confidence 4568899999999999999999998753222111 111110
Q ss_pred hcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHH-HHHHhhccccEEEEEecCCCCccchH-
Q psy3395 109 ITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDM-LFQFITKETCLILAVTPANTDLATSD- 186 (775)
Q Consensus 109 ~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~l-v~~yi~~~~~iILaV~~a~~d~~~s~- 186 (775)
....+++.+ ..++|+|+||+.+...-....+ ....+ ...|+...+.+|++ ..+...+..++
T Consensus 234 ----------~~~~~~~~~---~~~~l~DT~G~~~~~~~~~~~e---~~~~~~~~~~~~~ad~~llv-iD~~~~~~~~~~ 296 (456)
T 4dcu_A 234 ----------VDTSFTYNQ---QEFVIVDTAGMRKKGKVYETTE---KYSVLRALKAIDRSEVVAVV-LDGEEGIIEQDK 296 (456)
T ss_dssp ----------TSEEEEETT---EEEEETTGGGTTTBTTBCCCCS---HHHHHHHHHHHHHCSEEEEE-EETTTCCCHHHH
T ss_pred ----------EEEEEEECC---ceEEEEECCCCCcCcccchHHH---HHHHHHHHHHHhhCCEEEEE-EeCCCCcCHHHH
Confidence 011222222 2688999999865322111111 12222 34577777766555 55655555444
Q ss_pred -HHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 187 -ALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 187 -~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+.++.+ .|...+.| ++|+|+.+.
T Consensus 297 ~~~~~~~~---~~~~~ilv----~NK~Dl~~~ 321 (456)
T 4dcu_A 297 RIAGYAHE---AGKAVVIV----VNKWDAVDK 321 (456)
T ss_dssp HHHHHHHH---TTCEEEEE----EECGGGSCC
T ss_pred HHHHHHHH---cCCCEEEE----EEChhcCCC
Confidence 3444444 56788888 999999864
No 92
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.09 E-value=5.7e-06 Score=81.16 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=24.4
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 29 QMDLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 29 ~i~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.-..+.|+|||+.++|||||+++|++..|
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~ 42 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQS 42 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35567899999999999999999999876
No 93
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.08 E-value=7.2e-06 Score=78.09 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+.+|+|||+.++|||||+++|+|..+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccC
Confidence 45799999999999999999998764
No 94
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.07 E-value=7.8e-06 Score=78.22 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.+.|+|||+.++|||||+++|+|..|
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~ 29 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQE 29 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC--
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCC
Confidence 46899999999999999999999876
No 95
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.07 E-value=1.1e-05 Score=80.01 Aligned_cols=118 Identities=17% Similarity=0.280 Sum_probs=69.5
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
..+|+|||+.++|||||+++|++..| +.... .|- |
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~-~t~-------------------------------------------~ 63 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAF-SERQG-STI-------------------------------------------G 63 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC------------------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCC-CCCCC-CCc-------------------------------------------c
Confidence 46799999999999999999998765 21110 000 0
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~ 189 (775)
..+. ...+.+. .....+.|+|+||... .+.+...|+.+.+++|+++-..+.+ +.. ...+.
T Consensus 64 --~~~~--~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~ 125 (201)
T 2hup_A 64 --VDFT--MKTLEIQ-GKRVKLQIWDTAGQER-------------FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIE 125 (201)
T ss_dssp ---CEE--EEEEEET-TEEEEEEEECCTTCGG-------------GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHH
T ss_pred --eEEE--EEEEEEC-CEEEEEEEEECCCcHh-------------HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHH
Confidence 0000 0111111 1124688999999532 2457788999998887766543321 111 12344
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.++...+.+...+.| .||.|+.+
T Consensus 126 ~i~~~~~~~~piilv----~NK~Dl~~ 148 (201)
T 2hup_A 126 DVRKYAGSNIVQLLI----GNKSDLSE 148 (201)
T ss_dssp HHHHHSCTTCEEEEE----EECTTCGG
T ss_pred HHHHhcCCCCCEEEE----EECCcccc
Confidence 444444455677888 89999864
No 96
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.07 E-value=6.9e-06 Score=79.83 Aligned_cols=115 Identities=16% Similarity=0.236 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
..-.+|+|||..++|||||+++|++..| .. -.| +
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~------~~~-------t-------------------------------- 52 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VH------TSP-------T-------------------------------- 52 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EE------EEC-------C--------------------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-Cc------cCC-------c--------------------------------
Confidence 3456799999999999999999999765 10 000 0
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH--
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA-- 187 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~-- 187 (775)
.++. .-.+.+. -..+.|+|+||.... +.+...|+.+.+++|+++-..+. -.-..+
T Consensus 53 ----~~~~--~~~~~~~---~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~-~s~~~~~~ 109 (181)
T 2h17_A 53 ----IGSN--VEEIVIN---NTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTDR-ERISVTRE 109 (181)
T ss_dssp ----SSSS--CEEEEET---TEEEEEEEESSSGGG-------------TCGGGGGGTTCCEEEEEEETTCT-TTHHHHHH
T ss_pred ----Ccee--eEEEEEC---CEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCH-HHHHHHHH
Confidence 0000 0122221 257889999997432 23456788888877766554332 222222
Q ss_pred --HHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 188 --LQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 188 --l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
..+.+.....+...+.| +||.|+.+.
T Consensus 110 ~~~~~~~~~~~~~~piilv----~NK~Dl~~~ 137 (181)
T 2h17_A 110 ELYKMLAHEDLRKAGLLIF----ANKQDVKEC 137 (181)
T ss_dssp HHHHHHTCGGGTTCEEEEE----EECTTSTTC
T ss_pred HHHHHHhChhhCCCeEEEE----EECCCcccC
Confidence 22222222355778888 999999753
No 97
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.05 E-value=5.4e-06 Score=81.99 Aligned_cols=27 Identities=26% Similarity=0.673 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFL 58 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~fl 58 (775)
...|+|+|..++|||||+++|+|..|.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~ 34 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFS 34 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 457999999999999999999998763
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.04 E-value=1.5e-06 Score=85.98 Aligned_cols=117 Identities=14% Similarity=0.199 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
..+|+|+|..++|||||+++|++..|........|.-
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~------------------------------------------- 69 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVD------------------------------------------- 69 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCS-------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccce-------------------------------------------
Confidence 4579999999999999999999876522111111100
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc---hHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT---SDAL 188 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~---s~~l 188 (775)
+ ....+.+. .....++|+|+||.... +.+...|+.+.+.+|+++ +++..-.- ...+
T Consensus 70 ----~--~~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~ 128 (199)
T 3l0i_B 70 ----F--KIRTIELD-GKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVY-DVTDQESFNNVKQWL 128 (199)
T ss_dssp ----E--EEEEEEET-TEEEEEEEECCTTCTTC-------------CCCSCC--CCCSEEEECC--CCCSHHHHHHHHHH
T ss_pred ----E--EEEEEEEC-CEEEEEEEEECCCcHhH-------------HHHHHHHhhcCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 0 00111111 11236889999995432 113445777777776654 44332211 2234
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
..+....+.+...+.| +||.|+.+
T Consensus 129 ~~i~~~~~~~~p~ilv----~nK~Dl~~ 152 (199)
T 3l0i_B 129 QEIDRYASENVNKLLV----GNKCDLTT 152 (199)
T ss_dssp HHHHSCC-CCSEEEEC-----CCSSCC-
T ss_pred HHHHHhccCCCCEEEE----EECccCCc
Confidence 4455555566788899 99999864
No 99
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.04 E-value=7.1e-06 Score=79.80 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
.-.+|+|+|+.++|||||+++++|..+ . .. ..|.-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~-~~-~~t~~------------------------------------------ 51 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV-D-TI-SPTLG------------------------------------------ 51 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC-S-SC-CCCSS------------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC-C-cc-cccCc------------------------------------------
Confidence 346899999999999999999998651 1 11 11110
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH---
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA--- 187 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~--- 187 (775)
+.. -.+.+ +...++++|+||.. ..+.+...|+.+.+.+|+++-..+.+ .-.++
T Consensus 52 -----~~~--~~~~~---~~~~~~~~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~ 107 (186)
T 1ksh_A 52 -----FNI--KTLEH---RGFKLNIWDVGGQK-------------SLRSYWRNYFESTDGLIWVVDSADRQ-RMQDCQRE 107 (186)
T ss_dssp -----EEE--EEEEE---TTEEEEEEEECCSH-------------HHHTTGGGGCTTCSEEEEEEETTCGG-GHHHHHHH
T ss_pred -----cce--EEEEE---CCEEEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEEEECcCHH-HHHHHHHH
Confidence 000 01111 13468899999963 23446678888888777765543322 12222
Q ss_pred -HHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 188 -LQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 188 -l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
..+.+.....+...+.| +||.|+.++
T Consensus 108 ~~~~~~~~~~~~~piilv----~nK~Dl~~~ 134 (186)
T 1ksh_A 108 LQSLLVEERLAGATLLIF----ANKQDLPGA 134 (186)
T ss_dssp HHHHHTCGGGTTCEEEEE----EECTTSTTC
T ss_pred HHHHHhChhcCCCcEEEE----EeCccCCCC
Confidence 22222222345678888 999999764
No 100
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.04 E-value=8.3e-06 Score=91.17 Aligned_cols=125 Identities=22% Similarity=0.275 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDR 108 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 108 (775)
-..+.|+|||..++|||||+++|+|..|.+...- ..|.
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~----------------------------------------- 70 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTT----------------------------------------- 70 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------C-----------------------------------------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeee-----------------------------------------
Confidence 3467899999999999999999999775222110 0011
Q ss_pred hcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHH
Q psy3395 109 ITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDAL 188 (775)
Q Consensus 109 ~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l 188 (775)
++....+.......+.|+|+||......-++ .... -...|+.+.+.+|+++ ++...-.....+
T Consensus 71 ----------d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~-~~~~-----~~~~~l~~aD~vllVv-D~~~~~~~~~~l 133 (423)
T 3qq5_A 71 ----------DPVYKSMELHPIGPVTLVDTPGLDDVGELGR-LRVE-----KARRVFYRADCGILVT-DSAPTPYEDDVV 133 (423)
T ss_dssp ----------CCCEEEEEETTTEEEEEEECSSTTCCCTTCC-CCHH-----HHHHHHTSCSEEEEEC-SSSCCHHHHHHH
T ss_pred ----------eeEEEEEEECCCCeEEEEECcCCCcccchhH-HHHH-----HHHHHHhcCCEEEEEE-eCCChHHHHHHH
Confidence 1111111112223789999999975322111 1111 2556777777666654 553332334466
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCChh
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQPA 219 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~~~ 219 (775)
..+++. +...+.| +||+|+.+...
T Consensus 134 ~~l~~~---~~piIvV----~NK~Dl~~~~~ 157 (423)
T 3qq5_A 134 NLFKEM---EIPFVVV----VNKIDVLGEKA 157 (423)
T ss_dssp HHHHHT---TCCEEEE----CCCCTTTTCCC
T ss_pred HHHHhc---CCCEEEE----EeCcCCCCccH
Confidence 667765 5678999 99999986543
No 101
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.03 E-value=8.3e-06 Score=78.83 Aligned_cols=26 Identities=42% Similarity=0.583 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.+.|+|+|+.++|||||+++|++..|
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~ 31 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF 31 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC
Confidence 35799999999999999999997665
No 102
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.03 E-value=1.4e-05 Score=77.61 Aligned_cols=28 Identities=29% Similarity=0.606 Sum_probs=24.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..-+.|++||+.++|||||+++|+|..+
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~ 32 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENV 32 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4557899999999999999999999764
No 103
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.03 E-value=1e-05 Score=76.68 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..|+|+|+.++|||||+++|++..|
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~ 31 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQF 31 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4699999999999999999998765
No 104
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.02 E-value=8.6e-06 Score=90.79 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
..|.++|||..||||||||++|+|..+..+. +....|
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~--~~~~~~----------------------------------------- 77 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEP--ATHTQP----------------------------------------- 77 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC---------CCS-----------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCc--CCCCCc-----------------------------------------
Confidence 4566999999999999999999998532111 000000
Q ss_pred CCCCcccccCeEEEEecCCC-cceEEEeCCCCCccCCCC-Ccc----cHHHHHHHHHHHHhhcc-----------ccEEE
Q psy3395 111 GSNKGISNVPINLRVYSPNV-LNITLIDLPGLTKVPVGD-QPI----DIEQQIKDMLFQFITKE-----------TCLIL 173 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~-~~LtlvDlPG~~~~~~~~-q~~----di~~~i~~lv~~yi~~~-----------~~iIL 173 (775)
+ .....+.+....+.+ ++||++|+||+....... .-. .+..++..++..|+.-. +++++
T Consensus 78 ~----~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~ 153 (427)
T 2qag_B 78 G----VQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLY 153 (427)
T ss_dssp S----CEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEE
T ss_pred c----ceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEE
Confidence 0 000012222222332 489999999986532110 001 13344455555553211 24678
Q ss_pred EEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 174 AVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 174 aV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.|++++..+...| +.+++.+. .+.+.|.| ++|.|...+
T Consensus 154 fI~d~~~~l~~~D-ieilk~L~-~~~~vI~V----i~KtD~Lt~ 191 (427)
T 2qag_B 154 FIAPTGHSLKSLD-LVTMKKLD-SKVNIIPI----IAKADAISK 191 (427)
T ss_dssp EECCCC---CHHH-HHHHHHTC-SCSEEEEE----ESCGGGSCH
T ss_pred EEeCCCCCCCHHH-HHHHHHHh-hCCCEEEE----Ecchhccch
Confidence 8899888777777 67778887 67899999 999998864
No 105
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.02 E-value=7.1e-06 Score=92.09 Aligned_cols=126 Identities=16% Similarity=0.233 Sum_probs=71.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
..+.|++||+.++|||||+++|+|..+...+. -..||-..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~--------------------------------------- 214 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAV--------------------------------------- 214 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------C---------------------------------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeee---------------------------------------
Confidence 46799999999999999999999987532211 01122100
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHH-HHHHhhccccEEEEEecCCCCccchHHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDM-LFQFITKETCLILAVTPANTDLATSDAL 188 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~l-v~~yi~~~~~iILaV~~a~~d~~~s~~l 188 (775)
...+++.+ ..++|+|+||+.+..... +.++ ....+ ...|+...+++||+ .+++.....++.
T Consensus 215 ----------~~~~~~~~---~~~~l~DT~G~~~~~~~~--~~~e-~~~~~~~~~~~~~ad~~llv-~D~~~~~s~~~~- 276 (436)
T 2hjg_A 215 ----------DTSFTYNQ---QEFVIVDTAGMRKKGKVY--ETTE-KYSVLRALKAIDRSEVVAVV-LDGEEGIIEQDK- 276 (436)
T ss_dssp ----------CEEEEETT---EEEEETTHHHHTCBTTBC--CCCS-HHHHHHHHHHHHHCSEEEEE-EETTTCCCHHHH-
T ss_pred ----------EEEEEECC---eEEEEEECCCcCcCcccc--chHH-HHHHHHHHHHHHhCCEEEEE-EcCCcCCcHHHH-
Confidence 01122211 247899999985432211 1122 11112 23577777766555 555555544442
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.++..+...|...+.| ++|+|+.+.
T Consensus 277 ~~~~~~~~~~~~iiiv----~NK~Dl~~~ 301 (436)
T 2hjg_A 277 RIAGYAHEAGKAVVIV----VNKWDAVDK 301 (436)
T ss_dssp HHHHHHHHTTCEEEEE----EECGGGSCC
T ss_pred HHHHHHHHcCCcEEEE----EECccCCCc
Confidence 3333333346788888 999999864
No 106
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.02 E-value=2.3e-05 Score=76.45 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFL 58 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~fl 58 (775)
...+|+|||..++|||||+++|++..|.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~ 41 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFD 41 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3457999999999999999999998763
No 107
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.02 E-value=1e-05 Score=88.58 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=42.2
Q ss_pred cceEEEeCCCCCccCCC-CCcccHHHHHHHHHHHHhhccc-------------cEEEEEecCCCCccchHHHHHHHhcCC
Q psy3395 131 LNITLIDLPGLTKVPVG-DQPIDIEQQIKDMLFQFITKET-------------CLILAVTPANTDLATSDALQIAKQVDP 196 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~-~q~~di~~~i~~lv~~yi~~~~-------------~iILaV~~a~~d~~~s~~l~lar~~DP 196 (775)
..|+++|+||+...... ..-..+...+.+....|+.... ++++.|.++...+...+. .+.+.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~-~~~~~l~- 172 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-AFMKAIH- 172 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH-HHHHHTC-
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH-HHHHHhc-
Confidence 46899999998543211 1112233344445557776543 355666555555655543 4555665
Q ss_pred CCCcceeccCCCCcccCCCCC
Q psy3395 197 DVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 197 ~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+...|.| +||+|+...
T Consensus 173 ~~~piIlV----~NK~Dl~~~ 189 (361)
T 2qag_A 173 NKVNIVPV----IAKADTLTL 189 (361)
T ss_dssp S-SCEEEE----EECCSSSCH
T ss_pred cCCCEEEE----EECCCCCCH
Confidence 35678999 999999853
No 108
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.02 E-value=9.2e-06 Score=81.08 Aligned_cols=117 Identities=17% Similarity=0.325 Sum_probs=70.5
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
...|+|||+.++|||||+++|++..| +...+ +.+. ...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~---~~~------------------------------------- 64 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGV---DFM------------------------------------- 64 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSE---EEE-------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccce---eEE-------------------------------------
Confidence 45799999999999999999998775 32221 1110 000
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-cc-chHHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LA-TSDAL 188 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~-~s~~l 188 (775)
...+.+.+ ....++|+|+||... .+.+...|+.+.+++|+++-..+.+ +. ....+
T Consensus 65 ---------~~~~~~~~-~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~ 121 (201)
T 2ew1_A 65 ---------IKTVEING-EKVKLQIWDTAGQER-------------FRSITQSYYRSANALILTYDITCEESFRCLPEWL 121 (201)
T ss_dssp ---------EEEEEETT-EEEEEEEEEECCSGG-------------GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHH
T ss_pred ---------EEEEEECC-EEEEEEEEECCCcHH-------------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 00111111 123578999999422 3457788998888887766543321 11 12334
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
..++...+.+...+.| .||+|+.+
T Consensus 122 ~~i~~~~~~~~piilv----~NK~Dl~~ 145 (201)
T 2ew1_A 122 REIEQYASNKVITVLV----GNKIDLAE 145 (201)
T ss_dssp HHHHHHSCTTCEEEEE----EECGGGGG
T ss_pred HHHHHhcCCCCCEEEE----EECCCCcc
Confidence 4555555556677888 89999863
No 109
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.02 E-value=3.6e-06 Score=83.10 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=41.6
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch---HHHHHHHhcCC---CCCcceec
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS---DALQIAKQVDP---DVLNLTLV 204 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s---~~l~lar~~DP---~g~RtigV 204 (775)
..+.|+|+||.. ..+.+...|+.+.+.+|+++...+.+ .-. ..+..++...+ .+...+.|
T Consensus 73 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv 138 (208)
T 2yc2_C 73 VELFLLDTAGSD-------------LYKEQISQYWNGVYYAILVFDVSSME-SFESCKAWFELLKSARPDRERPLRAVLV 138 (208)
T ss_dssp EEEEEEETTTTH-------------HHHHHHSTTCCCCCEEEEEEETTCHH-HHHHHHHHHHHHHHHCSCTTSCCEEEEE
T ss_pred EEEEEEECCCcH-------------HHHHHHHHHHhhCcEEEEEEECCCHH-HHHHHHHHHHHHHHhhcccccCCcEEEE
Confidence 468899999962 34567888898888877766543321 111 23444444444 46778888
Q ss_pred cCCCCcccCCCC
Q psy3395 205 DLPGMTKVPIGD 216 (775)
Q Consensus 205 dLPGlTK~D~~~ 216 (775)
.||.|+.+
T Consensus 139 ----~nK~Dl~~ 146 (208)
T 2yc2_C 139 ----ANKTDLPP 146 (208)
T ss_dssp ----EECC----
T ss_pred ----EECcccch
Confidence 89999875
No 110
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.01 E-value=5.2e-06 Score=79.80 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
-.+|+|||+.++|||||+++|++..|
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~ 31 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETF 31 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcC
Confidence 35799999999999999999998765
No 111
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.00 E-value=3.1e-06 Score=82.02 Aligned_cols=70 Identities=9% Similarity=0.217 Sum_probs=35.8
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~lar~~DP~g~RtigVdLPG 208 (775)
..+.|+|+||... .+.+...|+.+.+++|+++...+.+ +.. ...+..++...+.+...+.|
T Consensus 57 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv---- 119 (183)
T 2fu5_C 57 IKLQIWDTAGQER-------------FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL---- 119 (183)
T ss_dssp EEEEEEEC----------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEE----
T ss_pred EEEEEEcCCCChh-------------hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEE----
Confidence 4688999999532 2345667888888777765543321 111 12333444443345677888
Q ss_pred CcccCCCCC
Q psy3395 209 MTKVPIGDQ 217 (775)
Q Consensus 209 lTK~D~~~~ 217 (775)
.||.|+.++
T Consensus 120 ~nK~Dl~~~ 128 (183)
T 2fu5_C 120 GNKCDVNDK 128 (183)
T ss_dssp EEC--CCSC
T ss_pred EECccCCcc
Confidence 899998753
No 112
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.00 E-value=5.9e-06 Score=80.70 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
-..|+|||+.++|||||+++|++..|
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~ 47 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDV 47 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999987665
No 113
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.00 E-value=5.5e-06 Score=82.09 Aligned_cols=28 Identities=25% Similarity=0.570 Sum_probs=24.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
....+|+|||+.++|||||+++|++..|
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCC
Confidence 3456799999999999999999999876
No 114
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.99 E-value=1.3e-05 Score=78.68 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.-..|+|||..++|||||+++|++..|
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~ 33 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTF 33 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCC
Confidence 346899999999999999999998765
No 115
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.99 E-value=1e-05 Score=79.80 Aligned_cols=113 Identities=17% Similarity=0.233 Sum_probs=65.0
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
-.+|+|||+.++|||||+++|++..| +. ...|.-
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~-~~--~~~t~~------------------------------------------- 62 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEI-VT--TIPTIG------------------------------------------- 62 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCC-EE--EEEETT-------------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCc-cc--cCCcCc-------------------------------------------
Confidence 46799999999999999999998765 21 011110
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHH---
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDAL--- 188 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l--- 188 (775)
+. .-.+.. ....+.++|+||... .+.+...|+.+.+++|+++-..+.+ .-..+.
T Consensus 63 ----~~--~~~~~~---~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~-s~~~~~~~l 119 (192)
T 2b6h_A 63 ----FN--VETVEY---KNICFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRE-RVQESADEL 119 (192)
T ss_dssp ----EE--EEEEEE---TTEEEEEEECC------------------CTTHHHHHHTCCEEEEEEETTCGG-GHHHHHHHH
T ss_pred ----ee--EEEEEE---CCEEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEECCCHH-HHHHHHHHH
Confidence 00 001111 124688999999643 2335667888888887765543321 112222
Q ss_pred -HHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 189 -QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 189 -~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+.+.....+...+.| .||.|+.+.
T Consensus 120 ~~~~~~~~~~~~piilv----~NK~Dl~~~ 145 (192)
T 2b6h_A 120 QKMLQEDELRDAVLLVF----ANKQDMPNA 145 (192)
T ss_dssp HHHHTCGGGTTCEEEEE----EECTTSTTC
T ss_pred HHHhcccccCCCeEEEE----EECCCCCCC
Confidence 2222222345678888 899999754
No 116
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.99 E-value=9.8e-06 Score=79.93 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=65.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
-....|+|||+.++|||||++++++..| +......|.....
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~-------------------------------------- 58 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFS-------------------------------------- 58 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEE--------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeE--------------------------------------
Confidence 3456799999999999999999998775 3221111111000
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--H
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--D 186 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~ 186 (775)
..+.+. .....+.|+|+||..... .+...|+.+.+.+|+++...+.+ +.+. .
T Consensus 59 -----------~~~~~~-~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 113 (201)
T 2q3h_A 59 -----------AVVSVD-GRPVRLQLCDTAGQDEFD-------------KLRPLCYTNTDIFLLCFSVVSPSSFQNVSEK 113 (201)
T ss_dssp -----------EEEEET-TEEEEEEEEECCCSTTCS-------------SSGGGGGTTCSEEEEEEETTCHHHHHHHHHT
T ss_pred -----------EEEEEC-CEEEEEEEEECCCCHHHH-------------HHhHhhcCCCcEEEEEEECCCHHHHHHHHHH
Confidence 001111 112357799999975421 13456788888777665543321 1111 1
Q ss_pred HHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 187 ALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 187 ~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+..++...| +...+.| .||.|+.+.
T Consensus 114 ~~~~~~~~~~-~~p~ilv----~nK~Dl~~~ 139 (201)
T 2q3h_A 114 WVPEIRCHCP-KAPIILV----GTQSDLRED 139 (201)
T ss_dssp HHHHHHHHCS-SSCEEEE----EECGGGGGC
T ss_pred HHHHHHHhCC-CCCEEEE----EECHhhhhc
Confidence 3334444444 5678888 899999764
No 117
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.98 E-value=5.7e-06 Score=80.02 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
-.+|+|||+.++|||||+++|++..|
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~ 43 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEV 43 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCc
Confidence 56899999999999999999997654
No 118
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.98 E-value=2.4e-05 Score=77.10 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=70.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
-....|+|||+.++|||||++.+.|. |.+. . |.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~-~---~~------------------------------------------ 50 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSPN-E---TL------------------------------------------ 50 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC-CCGG-G---GG------------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc-CCCc-c---ee------------------------------------------
Confidence 34678999999999999999999985 3232 1 00
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHH---HHHhhccccEEEEEecCCCCccc--
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDML---FQFITKETCLILAVTPANTDLAT-- 184 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv---~~yi~~~~~iILaV~~a~~d~~~-- 184 (775)
+..+....+...+.+.....+.|+|+||..... .+. ..|+.+.+++|+++-..+ .+..
T Consensus 51 ---~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~ 113 (196)
T 3llu_A 51 ---FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFF-------------DPTFDYEMIFRGTGALIYVIDAQD-DYMEAL 113 (196)
T ss_dssp ---GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTT-------------CTTCCHHHHHHTCSEEEEEEETTS-CCHHHH
T ss_pred ---eeccccceeeeeccCCCeeEEEEEECCCCHHHH-------------hhhhhcccccccCCEEEEEEECCC-chHHHH
Confidence 001112223333433345679999999964321 133 678888888877665443 2211
Q ss_pred hHHHHHHHhc--CCCCCcceeccCCCCcccCCCCC
Q psy3395 185 SDALQIAKQV--DPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 185 s~~l~lar~~--DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.......+++ ...+...+.| .||.|+.+.
T Consensus 114 ~~~~~~l~~~~~~~~~~piilv----~nK~Dl~~~ 144 (196)
T 3llu_A 114 TRLHITVSKAYKVNPDMNFEVF----IHKVDGLSD 144 (196)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEE----EECGGGSCH
T ss_pred HHHHHHHHHHHhcCCCCcEEEE----EeccccCch
Confidence 1222233332 2235678888 899999764
No 119
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.97 E-value=1.4e-05 Score=78.45 Aligned_cols=117 Identities=16% Similarity=0.239 Sum_probs=69.6
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
..|+|+|+.++|||||+++|++..| +......+.....
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~----------------------------------------- 56 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYA----------------------------------------- 56 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEE-----------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeE-----------------------------------------
Confidence 4799999999999999999998765 3211111111000
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--HHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--DALQ 189 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~~l~ 189 (775)
..+.+. .....+.|+|+||..+. +.+...|+.+.+.+|+++...+.+ +.+. ..+.
T Consensus 57 --------~~~~~~-~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 114 (194)
T 2atx_A 57 --------VSVTVG-GKQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVP 114 (194)
T ss_dssp --------EEEESS-SCEEEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHH
T ss_pred --------EEEEEC-CEEEEEEEEECCCCcch-------------hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 000110 01236789999996432 124567888888877766543322 2121 2344
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCCh
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQP 218 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~~ 218 (775)
.+++..| +...+.| .||.|+.+..
T Consensus 115 ~~~~~~~-~~piilv----~nK~Dl~~~~ 138 (194)
T 2atx_A 115 ELKEYAP-NVPFLLI----GTQIDLRDDP 138 (194)
T ss_dssp HHHHHST-TCCEEEE----EECTTSTTCH
T ss_pred HHHHhCC-CCCEEEE----EEChhhcccc
Confidence 5555444 4678888 8999998653
No 120
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.97 E-value=1.7e-05 Score=77.31 Aligned_cols=115 Identities=15% Similarity=0.269 Sum_probs=69.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
-..+.|++||+.++|||||+++|+|..| .. -.|+ .
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~------~~~t-------~------------------------------- 48 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SH------ITPT-------Q------------------------------- 48 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EE------EEEE-------T-------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-Cc------ccCc-------C-------------------------------
Confidence 3467899999999999999999998753 10 0010 0
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH--
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA-- 187 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~-- 187 (775)
| +. .-.+.+. ...+.++|+||... .+.+...|+.+.+++|+++-..+.+ .-.++
T Consensus 49 -g----~~--~~~~~~~---~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 104 (181)
T 1fzq_A 49 -G----FN--IKSVQSQ---GFKLNVWDIGGQRK-------------IRPYWRSYFENTDILIYVIDSADRK-RFEETGQ 104 (181)
T ss_dssp -T----EE--EEEEEET---TEEEEEEECSSCGG-------------GHHHHHHHHTTCSEEEEEEETTCGG-GHHHHHH
T ss_pred -C----eE--EEEEEEC---CEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECcCHH-HHHHHHH
Confidence 0 00 0011111 24688999999532 2456788999998887766543322 11122
Q ss_pred --HHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 188 --LQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 188 --l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
..+.+.....+...+.| .||.|+.+.
T Consensus 105 ~~~~~~~~~~~~~~piilv----~NK~Dl~~~ 132 (181)
T 1fzq_A 105 ELTELLEEEKLSCVPVLIF----ANKQDLLTA 132 (181)
T ss_dssp HHHHHTTCGGGTTCCEEEE----EECTTSTTC
T ss_pred HHHHHHhChhhcCCCEEEE----EECcCcccC
Confidence 12222223345678888 899998754
No 121
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.97 E-value=1.7e-05 Score=89.74 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=22.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|++||..++|||||+++|+|..+
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHB
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Confidence 599999999999999999999654
No 122
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.96 E-value=6.8e-06 Score=79.45 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=69.1
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
..|+|+|..++|||||++++++..|.+... .|-... +
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~----------~------------------------------- 42 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYI--PTVFDN----------Y------------------------------- 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSSCC--CCSCCE----------E-------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCcC--Ccccce----------e-------------------------------
Confidence 469999999999999999999876522111 111000 0
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--HHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--DALQ 189 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~~l~ 189 (775)
...+.+. .....+.|+|+||.... +.+...|+.+.+.+|+++...+.. +... ..+.
T Consensus 43 -------~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 101 (186)
T 1mh1_A 43 -------SANVMVD-GKPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYP 101 (186)
T ss_dssp -------EEEEEET-TEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHH
T ss_pred -------EEEEEEC-CEEEEEEEEECCCCHhH-------------HHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHH
Confidence 0001111 11235779999997432 234556788888777765543321 2221 2344
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCCh
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQP 218 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~~ 218 (775)
.++...| +...+.| .||.|+.+..
T Consensus 102 ~~~~~~~-~~piilv----~nK~Dl~~~~ 125 (186)
T 1mh1_A 102 EVRHHCP-NTPIILV----GTKLDLRDDK 125 (186)
T ss_dssp HHHHHST-TSCEEEE----EECHHHHTCH
T ss_pred HHHHhCC-CCCEEEE----eEcccccccc
Confidence 5555555 5678888 9999997653
No 123
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.93 E-value=1.5e-05 Score=79.13 Aligned_cols=115 Identities=14% Similarity=0.241 Sum_probs=65.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
..-..|++||+.++|||||+++|+|..| +.- ..|.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~--~~t~------------------------------------------ 57 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRL-GQH--VPTL------------------------------------------ 57 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC---------CCC------------------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCC-Ccc--CCCC------------------------------------------
Confidence 4556899999999999999999998764 210 0010
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDA 187 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~ 187 (775)
|. ..-.+.+.+ ..+.++|+||.... +.+...|+...+.+|+++-..+.+ +.. ...
T Consensus 58 -~~------~~~~~~~~~---~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~ 114 (198)
T 1f6b_A 58 -HP------TSEELTIAG---MTFTTFDLGGHIQA-------------RRVWKNYLPAINGIVFLVDCADHERLLESKEE 114 (198)
T ss_dssp -CC------SCEEEEETT---EEEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHH
T ss_pred -Cc------eeEEEEECC---EEEEEEECCCcHhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHH
Confidence 00 011222222 47889999995331 235567888888877766543322 111 111
Q ss_pred HH-HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 188 LQ-IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 188 l~-lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+. +.+...+.+...+.| .||+|+.+
T Consensus 115 ~~~~~~~~~~~~~piilv----~NK~Dl~~ 140 (198)
T 1f6b_A 115 LDSLMTDETIANVPILIL----GNKIDRPE 140 (198)
T ss_dssp HHHHHTCGGGTTSCEEEE----EECTTSTT
T ss_pred HHHHHhCcccCCCcEEEE----EECCCccc
Confidence 22 222223456778889 99999975
No 124
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.93 E-value=1.4e-05 Score=90.88 Aligned_cols=120 Identities=18% Similarity=0.266 Sum_probs=68.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCcccc-CcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRG-SGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~-~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
+.|++||..++||||||++|+|..+.... ....||-+..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~---------------------------------------- 283 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVIS---------------------------------------- 283 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCC----------------------------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEE----------------------------------------
Confidence 57999999999999999999997642111 1122332210
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCC-ccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLT-KVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQI 190 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~-~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~l 190 (775)
-.+.+. -..++|+|+||+. ..........+ .....|+...+.+|+++- ++......+ ..+
T Consensus 284 ---------~~i~~~---g~~~~l~DTaG~~~~~~~~ve~~gi-----~~~~~~~~~aD~vl~VvD-~s~~~s~~~-~~i 344 (482)
T 1xzp_A 284 ---------EEIVIR---GILFRIVDTAGVRSETNDLVERLGI-----ERTLQEIEKADIVLFVLD-ASSPLDEED-RKI 344 (482)
T ss_dssp ---------EEEEET---TEEEEEEESSCCCSSCCTTCCCCCH-----HHHHHHHHHCSEEEEEEE-TTSCCCHHH-HHH
T ss_pred ---------EEEecC---CeEEEEEECCCccccchhhHHHHHH-----HHHHHHhhcccEEEEEec-CCCCCCHHH-HHH
Confidence 112221 1358899999987 43211111111 234568888886666554 433322222 233
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+.+ .+...+.| +||+|+.+.
T Consensus 345 l~~l--~~~piivV----~NK~DL~~~ 365 (482)
T 1xzp_A 345 LERI--KNKRYLVV----INKVDVVEK 365 (482)
T ss_dssp HHHH--TTSSEEEE----EEECSSCCC
T ss_pred HHHh--cCCCEEEE----EECcccccc
Confidence 3333 24578888 999999753
No 125
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.92 E-value=2.9e-05 Score=76.37 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
...+|+|+|+.++|||||+++|++..|
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~ 53 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRF 53 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 346799999999999999999999876
No 126
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.91 E-value=1.3e-05 Score=80.97 Aligned_cols=26 Identities=35% Similarity=0.682 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
...|+|||+.++|||||+++|++..|
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~ 38 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEF 38 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999876
No 127
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.91 E-value=3.2e-05 Score=86.25 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=23.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRG 61 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~ 61 (775)
.|+|||..|+||||||++|+|..+.+.+
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 3799999999999999999998764344
No 128
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.90 E-value=2e-05 Score=77.55 Aligned_cols=114 Identities=15% Similarity=0.248 Sum_probs=66.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
..-..|+|||+.++||||+++++++..| +.- ..|.-+.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~-~~~--~~t~~~~--------------------------------------- 58 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRL-ATL--QPTWHPT--------------------------------------- 58 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCC-CCC--CCCCSCE---------------------------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC-Ccc--ccCCCCC---------------------------------------
Confidence 3445899999999999999999998765 210 0111110
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH--
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA-- 187 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~-- 187 (775)
.-.+.+.+ ..+.++|+||.... +.+...|+++.+++|+++-..+.+ .-..+
T Consensus 59 ----------~~~~~~~~---~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~ 111 (190)
T 1m2o_B 59 ----------SEELAIGN---IKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVFLVDAADPE-RFDEARV 111 (190)
T ss_dssp ----------EEEEEETT---EEEEEEECCCSGGG-------------TTSGGGGCTTCCEEEEEEETTCGG-GHHHHHH
T ss_pred ----------eEEEEECC---EEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCChH-HHHHHHH
Confidence 01112211 46789999997432 224567888888777765543322 11222
Q ss_pred -H-HHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 188 -L-QIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 188 -l-~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+ .+.+.....+...+.| .||.|+.+
T Consensus 112 ~~~~~~~~~~~~~~piilv----~NK~Dl~~ 138 (190)
T 1m2o_B 112 ELDALFNIAELKDVPFVIL----GNKIDAPN 138 (190)
T ss_dssp HHHHHHTCGGGTTCCEEEE----EECTTSTT
T ss_pred HHHHHHcchhhcCCCEEEE----EECCCCcC
Confidence 2 2222223345678888 89999975
No 129
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.90 E-value=1.5e-05 Score=80.06 Aligned_cols=116 Identities=17% Similarity=0.268 Sum_probs=55.8
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
..|+|||+.++|||||+++|++..| +......+... +
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~-----------~------------------------------- 71 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFER-----------Y------------------------------- 71 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEE-----------E-------------------------------
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccee-----------E-------------------------------
Confidence 4799999999999999999998775 32211100000 0
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--HHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--DALQ 189 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~~l~ 189 (775)
...+.+.+ ....+.|+|+||... .+.+...|+.+.+++|+++-..+.+ +... ..+.
T Consensus 72 -------~~~~~~~~-~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 130 (214)
T 2j1l_A 72 -------MVNLQVKG-KPVHLHIWDTAGQDD-------------YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYP 130 (214)
T ss_dssp -------EEEEEETT-EEEEEEEEEC----------------------------CEEEEEEEEETTCHHHHHHHHHTHHH
T ss_pred -------EEEEEECC-EEEEEEEEECCCchh-------------hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHH
Confidence 00011111 123578999999432 2346677888888877765433221 1111 1334
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.++...+ +...+.| .||+|+.+.
T Consensus 131 ~~~~~~~-~~piilv----~nK~Dl~~~ 153 (214)
T 2j1l_A 131 EVNHFCK-KVPIIVV----GCKTDLRKD 153 (214)
T ss_dssp HHHHHCS-SCCEEEE----EECGGGGSC
T ss_pred HHHHhCC-CCCEEEE----EEChhhhcc
Confidence 4444444 4577888 899999765
No 130
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.90 E-value=1.7e-05 Score=77.24 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
..+|+|||+.++|||||++.|.|.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999999885
No 131
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.89 E-value=1.8e-05 Score=78.46 Aligned_cols=117 Identities=16% Similarity=0.215 Sum_probs=68.5
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
..|+|||+.++|||||++++++..| +......+-.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~-------------------------------------------- 60 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFE-------------------------------------------- 60 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCC--------------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccc--------------------------------------------
Confidence 3699999999999999999999775 3211000000
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc--hHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT--SDALQ 189 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~--s~~l~ 189 (775)
.+. ..+.+. .....+.|+|+||.... +.+...|+.+.+.+|+++...+.+ +.. ...+.
T Consensus 61 --~~~---~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 121 (201)
T 2gco_A 61 --NYI---ADIEVD-GKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP 121 (201)
T ss_dssp --CCE---EEEEET-TEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHH
T ss_pred --eEE---EEEEEC-CEEEEEEEEECCCchhH-------------HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 000 011111 11236789999995332 224456888888777765433221 111 12344
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCCh
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQP 218 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~~ 218 (775)
.++...| +...+.| +||+|+.+..
T Consensus 122 ~~~~~~~-~~piilv----~nK~Dl~~~~ 145 (201)
T 2gco_A 122 EVKHFCP-NVPIILV----GNKKDLRQDE 145 (201)
T ss_dssp HHHHHST-TCCEEEE----EECGGGTTCH
T ss_pred HHHHhCC-CCCEEEE----EecHHhhcCc
Confidence 5555444 4678888 8999998653
No 132
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.88 E-value=1.4e-05 Score=79.54 Aligned_cols=117 Identities=18% Similarity=0.235 Sum_probs=68.0
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
...|+|+|+.++|||||++++++..| +......+.....
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 47 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFS---------------------------------------- 47 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEE----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEE----------------------------------------
Confidence 35799999999999999999998765 3221111110000
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--HHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--DAL 188 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~~l 188 (775)
..+.+. .....+.|+|+||..... .+...|+.+.+.+|+++-..+.+ +.+. ..+
T Consensus 48 ---------~~~~~~-~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~ 104 (212)
T 2j0v_A 48 ---------ANVAVD-GQIVNLGLWDTAGQEDYS-------------RLRPLSYRGADIFVLAFSLISKASYENVLKKWM 104 (212)
T ss_dssp ---------EEEECS-SCEEEEEEECCCCCCCCC-------------C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHH
T ss_pred ---------EEEEEC-CEEEEEEEEECCCcHHHH-------------HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 001111 122467899999974321 24556888888887766433321 1111 234
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
..++...| +...+.| .||.|+.+.
T Consensus 105 ~~~~~~~~-~~piilv----~nK~Dl~~~ 128 (212)
T 2j0v_A 105 PELRRFAP-NVPIVLV----GTKLDLRDD 128 (212)
T ss_dssp HHHHHHCT-TCCEEEE----EECHHHHTC
T ss_pred HHHHHhCC-CCCEEEE----EeCHHhhhC
Confidence 44555555 4677888 899998654
No 133
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.87 E-value=2.2e-05 Score=75.63 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
-.|+|||+.++|||||++.+++..|
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4699999999999999999999876
No 134
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.87 E-value=7.4e-06 Score=81.61 Aligned_cols=116 Identities=19% Similarity=0.284 Sum_probs=67.0
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
..|+|||+.++|||||+++|++..| +... .|+. +
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~-----~~t~---------------------------------------~- 59 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEF-PEVY-----VPTV---------------------------------------F- 59 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-C---------------------------------------------------C-
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCC-CCcC-----CCcc---------------------------------------c-
Confidence 4799999999999999999999775 2111 0100 0
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc--hHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT--SDALQ 189 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~--s~~l~ 189 (775)
..+ ...+.+.+ ....+.|+|+||.... +.+...|+.+.+++|+++...+.+ +.. ...+.
T Consensus 60 -~~~---~~~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 121 (207)
T 2fv8_A 60 -ENY---VADIEVDG-KQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVP 121 (207)
T ss_dssp -CEE---EEEEEETT-EEEEEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHH
T ss_pred -ceE---EEEEEECC-EEEEEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 000 00111111 1236889999996432 124456788888777765543321 111 12344
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.++...| +...+.| +||.|+.+.
T Consensus 122 ~~~~~~~-~~piilv----~nK~Dl~~~ 144 (207)
T 2fv8_A 122 EVKHFCP-NVPIILV----ANKKDLRSD 144 (207)
T ss_dssp HHHHHST-TCCEEEE----EECGGGGGC
T ss_pred HHHHhCC-CCCEEEE----EEchhhhcc
Confidence 4554444 4678888 899999754
No 135
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.83 E-value=5.6e-05 Score=74.72 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
....|+|||+.++|||||+++|+|..+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~ 48 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQG 48 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEEC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccC
Confidence 346799999999999999999988643
No 136
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.82 E-value=0.00015 Score=83.46 Aligned_cols=151 Identities=16% Similarity=0.208 Sum_probs=79.3
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCC-CCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeecccccee
Q psy3395 5 PGLEQLIPIVNKLQDAFTQLGVP-MQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAE 83 (775)
Q Consensus 5 ~~m~~li~~~~~l~d~l~~~G~~-~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~ 83 (775)
+++..+...+..+... ..-|.. ....-..|++||..++|||||+++|+|..| +... ..|-... +..
T Consensus 14 ~g~~~i~~yl~~l~~~-~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~-~~~~-~~t~g~~----------~~~ 80 (535)
T 3dpu_A 14 QGKEAVRQYFQSIEEA-RSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETF-DPKE-SQTHGLN----------VVT 80 (535)
T ss_dssp SSHHHHHHHHHHHHHH-HHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC-------------CCC----------EEE
T ss_pred hCHHHHHHHHHHHHHh-hccCcccccccceEEEEECCCCCCHHHHHHHHhcCCC-CCCC-CCccceE----------EEE
Confidence 4566677766666431 122322 345556799999999999999999999876 2111 0110000 000
Q ss_pred eeccCCccccChHHHHHHHHHHHhhhcCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHH
Q psy3395 84 FLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQ 163 (775)
Q Consensus 84 ~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~ 163 (775)
... .+ +..+. +.. ......++++|+||.... ..+...
T Consensus 81 ~~~------~~-----------~~~v~-----~~~--------~~~~~~~~i~Dt~G~e~~-------------~~~~~~ 117 (535)
T 3dpu_A 81 KQA------PN-----------IKGLE-----NDD--------ELKECLFHFWDFGGQEIM-------------HASHQF 117 (535)
T ss_dssp EEG------GG-----------SGGGT-----TCS--------TTTTCEEEEECCCSCCTT-------------TTTCHH
T ss_pred ecc------cc-----------cccee-----ecC--------CCceEEEEEEECCcHHHH-------------HHHHHH
Confidence 000 00 00000 000 011346889999994321 123446
Q ss_pred HhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 164 FITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 164 yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
|+++.+.+|+ |..+...-.....+..++...+. ...+.| .||.|+.+.
T Consensus 118 ~l~~~d~ii~-V~D~s~~~~~~~~~~~l~~~~~~-~pvilV----~NK~Dl~~~ 165 (535)
T 3dpu_A 118 FMTRSSVYML-LLDSRTDSNKHYWLRHIEKYGGK-SPVIVV----MNKIDENPS 165 (535)
T ss_dssp HHHSSEEEEE-EECGGGGGGHHHHHHHHHHHSSS-CCEEEE----ECCTTTCTT
T ss_pred HccCCcEEEE-EEeCCCchhHHHHHHHHHHhCCC-CCEEEE----EECCCcccc
Confidence 6777665555 45554433334456666766653 577888 899999753
No 137
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.81 E-value=2.9e-05 Score=85.31 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccE
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 70 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~ 70 (775)
-.++|++||-.|+|||||+|+|+|.......--.|||-|.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~ 110 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTV 110 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeee
Confidence 3578999999999999999999997743333346788774
No 138
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.80 E-value=2.8e-05 Score=76.25 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
....|+|||+.++|||||+++|++..|
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC
Confidence 345799999999999999999999875
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.79 E-value=4.3e-05 Score=85.79 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..++|++||..++||||||++|+|..+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcc
Confidence 467999999999999999999999864
No 140
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.74 E-value=6.4e-05 Score=74.53 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..|++||..+|||||||++|+|..|
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~ 51 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKS 51 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC--
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3599999999999999999999864
No 141
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.74 E-value=3.6e-05 Score=83.09 Aligned_cols=111 Identities=16% Similarity=0.229 Sum_probs=64.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|||+.++|||||+++|++..| +.. ..|+-..
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~-~~~--~pT~~~~------------------------------------------- 200 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFN------------------------------------------- 200 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC-EEE--EEETTEE-------------------------------------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCC-CCc--ccccceE-------------------------------------------
Confidence 699999999999999999998775 211 1111100
Q ss_pred CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH----HHH
Q psy3395 114 KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD----ALQ 189 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~----~l~ 189 (775)
...+.. .-..++|+|+||-. ..+.+...|+...+.+|+++-..+.+ .-.. ...
T Consensus 201 ------~~~~~~---~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~vilV~D~~~~~-s~~~~~~~~~~ 257 (329)
T 3o47_A 201 ------VETVEY---KNISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIFVVDSNDRE-RVNEAREELMR 257 (329)
T ss_dssp ------EEEEEE---TTEEEEEEECC------------------CCSHHHHHTTEEEEEEEEETTCSS-SHHHHHHHHHH
T ss_pred ------EEEEec---CcEEEEEEECCCCH-------------hHHHHHHHHhccCCEEEEEEECCchH-HHHHHHHHHHH
Confidence 001111 12368899999932 22346778888888777765543322 1111 223
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+.+.....+...+.| .||.|+.+.
T Consensus 258 ~~~~~~~~~~piilV----~NK~Dl~~~ 281 (329)
T 3o47_A 258 MLAEDELRDAVLLVF----ANKQDLPNA 281 (329)
T ss_dssp HHTCGGGTTCEEEEE----EECTTSTTC
T ss_pred HHhhhccCCCeEEEE----EECccCCcc
Confidence 333333335678888 899998754
No 142
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.74 E-value=1.1e-05 Score=77.89 Aligned_cols=117 Identities=22% Similarity=0.302 Sum_probs=65.0
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
..+|+|||+.++|||||++++++..| +... .|+.- ..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~-----~~t~~------~~------------------------------- 44 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF-PTDY-----VPTVF------DN------------------------------- 44 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC-C----------------------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCC-----CCeee------ee-------------------------------
Confidence 46799999999999999999998765 2111 11100 00
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--HHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--DAL 188 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~~l 188 (775)
+.. .+.+. .....+.|+|+||.... +.+...|+.+.+.+|+++...+.+ +.+. ..+
T Consensus 45 ----~~~---~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 103 (182)
T 3bwd_D 45 ----FSA---NVVVN-GATVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVSKKWI 103 (182)
T ss_dssp ----CBC---CCC--------CEEECCCC-CTT-------------TTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHH
T ss_pred ----EEE---EEEEC-CEEEEEEEEECCCChhh-------------hhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 000 00000 11235779999996432 235567888888777765543321 1111 234
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
..++...+ +...+.| .||+|+.+.
T Consensus 104 ~~~~~~~~-~~piilv----~nK~Dl~~~ 127 (182)
T 3bwd_D 104 PELKHYAP-GVPIVLV----GTKLDLRDD 127 (182)
T ss_dssp HHHHHHCT-TCCEEEE----EECHHHHTC
T ss_pred HHHHHhCC-CCCEEEE----EechhhhcC
Confidence 44555545 5678888 899998754
No 143
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.74 E-value=1.9e-05 Score=78.54 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
-.-..|+|||..++|||||++++++..|......+ |.....
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t-~~~~~~-------------------------------------- 68 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-VFDNYS-------------------------------------- 68 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCC-SEEEEE--------------------------------------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCe-ecceeE--------------------------------------
Confidence 34567999999999999999999987652221111 110000
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--H
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--D 186 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~ 186 (775)
..+.+. .....+.|+|+||.... +.+...|+.+.+++|+++...+.. +... .
T Consensus 69 -----------~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 123 (204)
T 4gzl_A 69 -----------ANVMVD-GKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVRAK 123 (204)
T ss_dssp -----------EEEECC--CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHT
T ss_pred -----------EEEEEC-CEEEEEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence 000000 11235679999997432 235566888888887766543321 1111 2
Q ss_pred HHHHHHhcCCCCCcceeccCCCCcccCCCCCh
Q psy3395 187 ALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQP 218 (775)
Q Consensus 187 ~l~lar~~DP~g~RtigVdLPGlTK~D~~~~~ 218 (775)
.+..++...+ +...+.| .||.|+.+..
T Consensus 124 ~~~~~~~~~~-~~piilv----~nK~Dl~~~~ 150 (204)
T 4gzl_A 124 WYPEVRHHCP-NTPIILV----GTKLDLRDDK 150 (204)
T ss_dssp HHHHHHHHCS-SCCEEEE----EECHHHHTCH
T ss_pred HHHHHHHhCC-CCCEEEE----Eechhhccch
Confidence 3344444433 4678888 8999998653
No 144
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.73 E-value=8.7e-05 Score=79.26 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=44.7
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH------HHHHHHhcCCCCCccee
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD------ALQIAKQVDPDVLNLTL 203 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~------~l~lar~~DP~g~Rtig 203 (775)
...+.++|+||.... .+...+.+...|+.+.+.+|+++-..+.+ .-.+ .+..++...| +...+.
T Consensus 51 ~~~l~i~Dt~G~~~~--------~~~~~~~~~~~~~~~ad~vi~V~D~t~~~-s~~~l~~~~~~l~~l~~~~~-~~piil 120 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVF--------MENYFTKQKDHIFQMVQVLIHVFDVESTE-VLKDIEIFAKALKQLRKYSP-DAKIFV 120 (307)
T ss_dssp TEEEEEEEECCSHHH--------HHHHHTTTHHHHHTTCSEEEEEEETTCSC-HHHHHHHHHHHHHHHHHHCT-TCEEEE
T ss_pred ceEEEEEECCCcHHH--------hhhhhhhHHHHHhccCCEEEEEEECCChh-hHHHHHHHHHHHHHHHHhCC-CCeEEE
Confidence 356889999995321 12222457788888888777766544332 1111 1333344444 467888
Q ss_pred ccCCCCcccCCCC
Q psy3395 204 VDLPGMTKVPIGD 216 (775)
Q Consensus 204 VdLPGlTK~D~~~ 216 (775)
| ++|.|+.+
T Consensus 121 v----~NK~Dl~~ 129 (307)
T 3r7w_A 121 L----LHKMDLVQ 129 (307)
T ss_dssp E----EECGGGSC
T ss_pred E----Eecccccc
Confidence 8 89999986
No 145
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.72 E-value=3.6e-05 Score=74.91 Aligned_cols=26 Identities=35% Similarity=0.522 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
...|+|||+.++|||||+++|++..|
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35799999999999999999999876
No 146
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.69 E-value=0.00018 Score=80.69 Aligned_cols=145 Identities=16% Similarity=0.177 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
....|++||..++|||||+++|++..- ......+. .+.+.. ...++...+++-+.+...++ +
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~------~i~~~~~~-~~~~~~-------~~~g~~~~~~a~~~d~~~~e--r-- 77 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTG------MVDKRTLE-KYEREA-------KEKNRETWYLSWALDTNQEE--R-- 77 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcC------CCchHHHH-HHHHHH-------HhccccchhhhhhhccchhH--h--
Confidence 456899999999999999999976431 11110000 000000 00000000111111111111 0
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--------
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-------- 182 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-------- 182 (775)
..+++-+.....+..++ ..++|+|+||..+ . ...+..|++..+.+||+|-.....+
T Consensus 78 --~~GiTid~~~~~~~~~~-~~~~iiDTPGh~~------------f-~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~ 141 (439)
T 3j2k_7 78 --DKGKTVEVGRAYFETEK-KHFTILDAPGHKS------------F-VPNMIGGASQADLAVLVISARKGEFETGFEKGG 141 (439)
T ss_pred --hcCceEEEeEEEEecCC-eEEEEEECCChHH------------H-HHHHHhhHhhCCEEEEEEECCCCccccccCCCc
Confidence 12333333333333333 3899999999521 2 3345566777887776665443322
Q ss_pred cchHHHHHHHhcCCCCCc-ceeccCCCCcccCCCC
Q psy3395 183 ATSDALQIAKQVDPDVLN-LTLVDLPGMTKVPIGD 216 (775)
Q Consensus 183 ~~s~~l~lar~~DP~g~R-tigVdLPGlTK~D~~~ 216 (775)
.+.+.+.+++.. |.+ .+.| +||+|+.+
T Consensus 142 qt~e~l~~~~~~---~v~~iIvv----iNK~Dl~~ 169 (439)
T 3j2k_7 142 QTREHAMLAKTA---GVKHLIVL----INKMDDPT 169 (439)
T ss_pred hHHHHHHHHHHc---CCCeEEEE----eecCCCcc
Confidence 233455555553 344 7888 99999964
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.66 E-value=9.6e-06 Score=93.19 Aligned_cols=113 Identities=22% Similarity=0.344 Sum_probs=69.0
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
.|.|+|+|..++||||||++|++..|.....+..|+-. +
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i-----------------------------------------~ 42 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI-----------------------------------------G 42 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT-----------------------------------------T
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE-----------------------------------------e
Confidence 58899999999999999999998765333333333310 0
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~ 189 (775)
...+..++-..++|+|+||.... ..+...|++..+.+||+| +++.....+ +.+.
T Consensus 43 ----------~~~v~~~~g~~i~~iDTPGhe~f-------------~~~~~~~~~~aD~vILVV-Da~dg~~~qt~e~l~ 98 (537)
T 3izy_P 43 ----------AFLVSLPSGEKITFLDTPGHAAF-------------SAMRARGTQVTDIVILVV-AADDGVMKQTVESIQ 98 (537)
T ss_dssp ----------SCCBCSSCSSCCBCEECSSSCCT-------------TTSBBSSSBSBSSCEEEC-BSSSCCCHHHHHHHH
T ss_pred ----------EEEEEeCCCCEEEEEECCChHHH-------------HHHHHHHHccCCEEEEEE-ECCCCccHHHHHHHH
Confidence 00001112225889999995321 124445666677666654 555443333 3455
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.++. .+.+.+.| +||+|+.+
T Consensus 99 ~~~~---~~vPiIVV----iNKiDl~~ 118 (537)
T 3izy_P 99 HAKD---AHVPIVLA----INKCDKAE 118 (537)
T ss_dssp HHHT---TTCCEEEC----CBSGGGTT
T ss_pred HHHH---cCCcEEEE----Eecccccc
Confidence 5554 45678899 99999874
No 148
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.66 E-value=4.9e-05 Score=76.34 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=41.7
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccc-hHHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LAT-SDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~-s~~l~lar~~DP~g~RtigVdLPG 208 (775)
..+.|+|+||.... +.+...|+.+.+.+|+++...+.. +.+ ...+..+...-+ +...+.|
T Consensus 64 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv---- 125 (221)
T 3gj0_A 64 IKFNVWDTAGQEKF-------------GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLC---- 125 (221)
T ss_dssp EEEEEEEECSGGGT-------------SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEE----
T ss_pred EEEEEEeCCChHHH-------------hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEE----
Confidence 36889999995332 224567888888777766543321 111 123444444433 4678888
Q ss_pred CcccCCCCC
Q psy3395 209 MTKVPIGDQ 217 (775)
Q Consensus 209 lTK~D~~~~ 217 (775)
.||+|+.+.
T Consensus 126 ~nK~Dl~~~ 134 (221)
T 3gj0_A 126 GNKVDIKDR 134 (221)
T ss_dssp EECTTSSSC
T ss_pred EECCccccc
Confidence 899999754
No 149
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.65 E-value=7.1e-05 Score=75.11 Aligned_cols=119 Identities=12% Similarity=0.107 Sum_probs=70.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
..-..|+|||+.++|||||+++|++..|...-.. |-. ..+.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~--t~~---~~~~---------------------------------- 65 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVP--TVF---ENYT---------------------------------- 65 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCC--CSE---EEEE----------------------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCC--eee---eeEE----------------------------------
Confidence 3456799999999999999999998876221111 100 0000
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-cc--chH
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LA--TSD 186 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~--~s~ 186 (775)
..+.+. .....+.|+|+||.... +.+...|+.+.+++|+++-..+.+ +. ...
T Consensus 66 -----------~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 120 (214)
T 3q3j_B 66 -----------ACLETE-EQRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPETVDSALKK 120 (214)
T ss_dssp -----------EEEEC---CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTH
T ss_pred -----------EEEEEC-CEEEEEEEEECCCCHhH-------------HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHH
Confidence 000111 11235789999996432 235567888888887766544322 11 123
Q ss_pred HHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 187 ALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 187 ~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+..++...| +...+.| .||.|+.+.
T Consensus 121 ~~~~i~~~~~-~~piilv----~nK~Dl~~~ 146 (214)
T 3q3j_B 121 WRTEILDYCP-STRVLLI----GCKTDLRTD 146 (214)
T ss_dssp HHHHHHHHCT-TSEEEEE----EECGGGGGC
T ss_pred HHHHHHHhCC-CCCEEEE----EEChhhccc
Confidence 4555665554 4677888 899999764
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.65 E-value=7e-05 Score=86.06 Aligned_cols=136 Identities=13% Similarity=0.208 Sum_probs=73.2
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
.+.|++||..++|||||+|+|++..-.....|.+... ...+....|+.+.. . ..|
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~-----------------~~~~~~~~d~~~~e----~----~~G 67 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSR-----------------KAARHATSDWMELE----K----QRG 67 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC---------------------CCHHHHHHHH----H----HHC
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeecc-----------------ccccceecccchhh----h----cCC
Confidence 5789999999999999999997532111111110000 00001111221111 0 112
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIA 191 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~la 191 (775)
-.+....+.+... -..++|+|+||.... ...+..|+...+++|++|-+. .....+. ..+.
T Consensus 68 --iTi~~~~~~~~~~---~~~i~liDTPG~~df-------------~~~~~~~l~~aD~allVvDa~-~g~~~~t-~~~~ 127 (528)
T 3tr5_A 68 --ISVTTSVMQFPYK---DYLINLLDTPGHADF-------------TEDTYRTLTAVDSALMVIDAA-KGVEPRT-IKLM 127 (528)
T ss_dssp --CSSSSSEEEEEET---TEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEETT-TCSCHHH-HHHH
T ss_pred --eeEEEeEEEEEeC---CEEEEEEECCCchhH-------------HHHHHHHHHhCCEEEEEEeCC-CCCCHHH-HHHH
Confidence 1222333333332 357999999997432 225778888888777665544 3332222 2333
Q ss_pred HhcCCCCCcceeccCCCCcccCCCC
Q psy3395 192 KQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 192 r~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+.+...+...+.| ++|+|+..
T Consensus 128 ~~~~~~~iPiivv----iNK~Dl~~ 148 (528)
T 3tr5_A 128 EVCRLRHTPIMTF----INKMDRDT 148 (528)
T ss_dssp HHHHTTTCCEEEE----EECTTSCC
T ss_pred HHHHHcCCCEEEE----EeCCCCcc
Confidence 3333346678899 99999964
No 151
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.64 E-value=5.2e-05 Score=75.75 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..|+|||+.++|||||+++|++..|
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999999876
No 152
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.64 E-value=9.9e-05 Score=72.19 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
-.|+|||+.++|||||++++++..|
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~ 46 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRF 46 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCC
Confidence 4699999999999999999998775
No 153
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00014 Score=84.92 Aligned_cols=147 Identities=22% Similarity=0.238 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
....|++||..++|||||+++|++... ..+...+ . .+.......|+...++.-+.....++ +..
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~------~i~~~~i----~----~~~~~~~~~g~~~~~~a~~~d~~~~e--~~~ 229 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLN------IVNQSQL----R----KLQRESETMGKSSFKFAWIMDQTNEE--RER 229 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSS------CSCCHHH----H----HHHHHSSCSSSSCCSSSHHHHHHHHH--HHT
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcC------CccHHHH----H----HHHhhhhhccccccceeeeeccchhh--hhC
Confidence 466899999999999999999998642 1111000 0 00000000111111222222222211 111
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCC--------Cc
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANT--------DL 182 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~--------d~ 182 (775)
| ++-+.....+..+ -..++|+|+||..+ ....+..|++..+++||+|-..+. .-
T Consensus 230 G----iTid~~~~~~~~~-~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~ 291 (611)
T 3izq_1 230 G----VTVSICTSHFSTH-RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDG 291 (611)
T ss_dssp T----TCCSCSCCEEECS-SCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTS
T ss_pred C----eeEeeeeEEEecC-CceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccchhhh
Confidence 2 2222223333333 35799999999632 233556677888877766654331 11
Q ss_pred cchHHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 183 ATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 183 ~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+...+.+++... ..+.|.| +||+|+.+.
T Consensus 292 qt~e~l~~~~~lg--i~~iIVV----vNKiDl~~~ 320 (611)
T 3izq_1 292 QTKEHMLLASSLG--IHNLIIA----MNKMDNVDW 320 (611)
T ss_dssp HHHHHHHHHHTTT--CCEEEEE----EECTTTTTT
T ss_pred HHHHHHHHHHHcC--CCeEEEE----Eecccccch
Confidence 2233455555432 2358888 999999863
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.63 E-value=6.2e-05 Score=85.56 Aligned_cols=147 Identities=22% Similarity=0.267 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
..-.|++||..++|||||+++|++... ..+...+. .+.... ...|+...++..+.+....+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~------~i~~~~~~-~~~~~~-------~~~g~~~~~~~~~~d~~~~e----- 92 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLN------IVNQSQLR-KLQRES-------ETMGKSSFKFAWIMDQTNEE----- 92 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTT------SSCHHHHH-HHCC----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC------CccHHHHH-HHHHHH-------HhcCCCcchhhhhhccchhH-----
Confidence 345799999999999999999987521 11110000 000000 00011111111111111111
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC------c--
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD------L-- 182 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d------~-- 182 (775)
...+++-+.....+..+ -..++|+|+||..+ ....+..|++..+.+||+|-..+.+ +
T Consensus 93 -~~~GiTi~~~~~~~~~~-~~~~~iiDTPG~~~-------------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~ 157 (483)
T 3p26_A 93 -RERGVTVSICTSHFSTH-RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDG 157 (483)
T ss_dssp ---CCSSCCCCEEEEECS-SCEEEEECCCCCGG-------------GHHHHHHHHTTCSEEEEEEECCC------CCCCH
T ss_pred -hhcCcceEeeeEEEecC-CceEEEEECCCcHH-------------HHHHHHHhhhhCCEEEEEEECCCCccccccchhh
Confidence 11244444444455444 35799999999732 2346677888888877766554432 1
Q ss_pred cchHHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 183 ATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 183 ~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+.+.+.+++... ..+.|.| +||+|+.+.
T Consensus 158 qt~e~~~~~~~~~--~~~iIvv----iNK~Dl~~~ 186 (483)
T 3p26_A 158 QTKEHMLLASSLG--IHNLIIA----MNKMDNVDW 186 (483)
T ss_dssp HHHHHHHHHHHTT--CCCEEEE----EECGGGGTT
T ss_pred hHHHHHHHHHHcC--CCcEEEE----EECcCcccc
Confidence 2223455555533 1357888 999999863
No 155
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.62 E-value=0.00014 Score=80.54 Aligned_cols=68 Identities=21% Similarity=0.213 Sum_probs=42.8
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-c-cchHHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-L-ATSDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~-~~s~~l~lar~~DP~g~RtigVdLPG 208 (775)
..++|+|+||.. .....+..++...+.+||+|...+.. . .+.+.+.+++.... ...+.|
T Consensus 75 ~~~~iiDtPGh~-------------~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivv---- 135 (403)
T 3sjy_A 75 RRISFIDAPGHE-------------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIV---- 135 (403)
T ss_dssp EEEEEEECCCCG-------------GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEE----
T ss_pred ceEEEEECCCcH-------------HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEE----
Confidence 368999999942 12335667778888777765544332 1 22334556665432 357888
Q ss_pred CcccCCCCC
Q psy3395 209 MTKVPIGDQ 217 (775)
Q Consensus 209 lTK~D~~~~ 217 (775)
+||+|+.+.
T Consensus 136 iNK~Dl~~~ 144 (403)
T 3sjy_A 136 QNKVDVVSK 144 (403)
T ss_dssp EECGGGSCH
T ss_pred EECccccch
Confidence 899999864
No 156
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.78 E-value=8e-06 Score=80.97 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=41.7
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccch--HHHHHHHhcCCCCCcceeccCCC
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATS--DALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s--~~l~lar~~DP~g~RtigVdLPG 208 (775)
.+.|+|+||... .+.+...|+.+.+++|+++...+.+ +... ..+..++...+ +...+.|
T Consensus 79 ~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv---- 140 (204)
T 3th5_A 79 NLGLWDTAGQED-------------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILV---- 140 (204)
Confidence 577999999532 2346667888888877765433322 2111 22334444333 5677888
Q ss_pred CcccCCCCC
Q psy3395 209 MTKVPIGDQ 217 (775)
Q Consensus 209 lTK~D~~~~ 217 (775)
.||.|+.+.
T Consensus 141 ~NK~Dl~~~ 149 (204)
T 3th5_A 141 GTKLDLRDD 149 (204)
Confidence 899999754
No 157
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.56 E-value=0.00011 Score=77.05 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
.++|||..||||||||++|+|..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999975
No 158
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.55 E-value=0.0001 Score=72.04 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=24.2
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..--+|+|||+.++|||||++.+++..|
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3444699999999999999999998776
No 159
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.51 E-value=0.00013 Score=77.48 Aligned_cols=117 Identities=18% Similarity=0.190 Sum_probs=69.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
....|+|+|+.++|||||++.+++..|..... ..|+.....
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~-~t~~~~~~~-------------------------------------- 194 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-PTVFDNYSA-------------------------------------- 194 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCC-CCSEEEEEE--------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccC-CcccceeEE--------------------------------------
Confidence 35789999999999999999999876522211 111110000
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH----
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD---- 186 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~---- 186 (775)
.+.+. .....+.|+|+||.... ..+...|+.+.+.+|+++...+ .....+
T Consensus 195 -----------~~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~ 248 (332)
T 2wkq_A 195 -----------NVMVD-GKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVS-PASFHHVRAK 248 (332)
T ss_dssp -----------EEEET-TEEEEEEEEEECCCGGG-------------TTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHT
T ss_pred -----------EEEEC-CEEEEEEEEeCCCchhh-------------hHHHHHhccCCCEEEEEEeCCC-HHHHHHHHHH
Confidence 00110 11235779999996432 2345668888887777654332 211112
Q ss_pred HHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 187 ALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 187 ~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+..++...+ +...+.| .||+|+.+.
T Consensus 249 ~~~~~~~~~~-~~p~ilv----~nK~Dl~~~ 274 (332)
T 2wkq_A 249 WYPEVRHHCP-NTPIILV----GTKLDLRDD 274 (332)
T ss_dssp HHHHHHHHCT-TSCEEEE----EECHHHHTC
T ss_pred HHHHHHhhCC-CCcEEEE----EEchhcccc
Confidence 2344555445 5678889 999998754
No 160
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.50 E-value=0.0001 Score=71.87 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-.|+|||+.++|||||++.|+|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999995
No 161
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.47 E-value=0.0002 Score=81.43 Aligned_cols=112 Identities=20% Similarity=0.186 Sum_probs=67.2
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
..|++||..++||||||++|++..| +. ...|+-+..
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~----------------------------------------- 358 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNV----------------------------------------- 358 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEE-----------------------------------------
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeE-----------------------------------------
Confidence 4799999999999999999998764 21 112221100
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHH----H
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDA----L 188 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~----l 188 (775)
-. +.. ....+.|+|+||.... +.+...|+.+.+.+|+++-..+ .-...++ .
T Consensus 359 --------~~--~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~V~D~~~-~~s~~~~~~~~~ 413 (497)
T 3lvq_E 359 --------ET--VTY-KNVKFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELH 413 (497)
T ss_dssp --------EE--EES-SSCEEEEEEECCCGGG-------------SGGGGGGGTTCCEEEEEEETTC-GGGHHHHHHHHH
T ss_pred --------EE--EEe-CCEEEEEEECCCcHHH-------------HHHHHHHhccCCEEEEEEECcc-hhHHHHHHHHHH
Confidence 00 111 1236889999995332 2356778888887766554433 2222222 2
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
.+.+.....+...+.| ++|.|+.+.
T Consensus 414 ~~~~~~~~~~~p~ilv----~NK~Dl~~~ 438 (497)
T 3lvq_E 414 RIINDREMRDAIILIF----ANKQDLPDA 438 (497)
T ss_dssp HHHTSGGGTTCEEEEE----EECCSSSSC
T ss_pred HHhhhhhcCCCcEEEE----EECCCCCcC
Confidence 2333333346678888 899998753
No 162
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.46 E-value=0.0003 Score=80.87 Aligned_cols=68 Identities=13% Similarity=0.249 Sum_probs=44.3
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCc
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMT 210 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlT 210 (775)
..++|+|+||.... ...+..|+...+++|++|.+.+ .... ....+.+.+.-.+...+.| +|
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvDa~~-g~~~-~t~~~~~~~~~~~ipiivv----iN 142 (529)
T 2h5e_A 82 CLVNLLDTPGHEDF-------------SEDTYRTLTAVDCCLMVIDAAK-GVED-RTRKLMEVTRLRDTPILTF----MN 142 (529)
T ss_dssp EEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEETTT-CSCH-HHHHHHHHHTTTTCCEEEE----EE
T ss_pred eEEEEEECCCChhH-------------HHHHHHHHHHCCEEEEEEeCCc-cchH-HHHHHHHHHHHcCCCEEEE----Ec
Confidence 57999999997432 1256678888888877665544 3322 2233333344456678889 99
Q ss_pred ccCCCCC
Q psy3395 211 KVPIGDQ 217 (775)
Q Consensus 211 K~D~~~~ 217 (775)
|+|+...
T Consensus 143 K~Dl~~~ 149 (529)
T 2h5e_A 143 KLDRDIR 149 (529)
T ss_dssp CTTSCCS
T ss_pred CcCCccc
Confidence 9999754
No 163
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.46 E-value=0.00057 Score=76.49 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=43.1
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc--hHHHHHHHhcCCCCCcceeccCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT--SDALQIAKQVDPDVLNLTLVDLP 207 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~--s~~l~lar~~DP~g~RtigVdLP 207 (775)
...++|+|+||... ....+..|+...+.+||+|. |+..... .+.+.+++... ....+.|
T Consensus 103 ~~~~~iiDtpGh~~-------------f~~~~~~~~~~aD~~ilVvD-a~~g~~~qt~~~l~~~~~~~--~~~iIvv--- 163 (434)
T 1zun_B 103 KRKFIIADTPGHEQ-------------YTRNMATGASTCDLAIILVD-ARYGVQTQTRRHSYIASLLG--IKHIVVA--- 163 (434)
T ss_dssp SEEEEEEECCCSGG-------------GHHHHHHHHTTCSEEEEEEE-TTTCSCHHHHHHHHHHHHTT--CCEEEEE---
T ss_pred CceEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEEE-CCCCCcHHHHHHHHHHHHcC--CCeEEEE---
Confidence 34799999999532 12345567888887776655 4443322 23455666542 1357888
Q ss_pred CCcccCCCCC
Q psy3395 208 GMTKVPIGDQ 217 (775)
Q Consensus 208 GlTK~D~~~~ 217 (775)
+||+|+.+.
T Consensus 164 -iNK~Dl~~~ 172 (434)
T 1zun_B 164 -INKMDLNGF 172 (434)
T ss_dssp -EECTTTTTS
T ss_pred -EEcCcCCcc
Confidence 999999863
No 164
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.45 E-value=0.00057 Score=75.88 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=41.4
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc---cchHHHHHHHhcCCCCCcceeccCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL---ATSDALQIAKQVDPDVLNLTLVDLP 207 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~---~~s~~l~lar~~DP~g~RtigVdLP 207 (775)
..++|+|+||.. .....+..++...+.+||+| +|+... .+.+.+.+++.... .+.+.|
T Consensus 83 ~~i~iiDtPGh~-------------~f~~~~~~~~~~~D~~ilVv-da~~g~~~~qt~e~l~~~~~~~~--~~iivv--- 143 (410)
T 1kk1_A 83 RRVSFIDAPGHE-------------ALMTTMLAGASLMDGAILVI-AANEPCPRPQTREHLMALQIIGQ--KNIIIA--- 143 (410)
T ss_dssp EEEEEEECSSHH-------------HHHHHHHHCGGGCSEEEEEE-ETTSCSSCHHHHHHHHHHHHHTC--CCEEEE---
T ss_pred cEEEEEECCChH-------------HHHHHHHhhhhhCCEEEEEE-ECCCCCCChhHHHHHHHHHHcCC--CcEEEE---
Confidence 468999999931 12234555666677766655 455432 23344556655432 357888
Q ss_pred CCcccCCCCC
Q psy3395 208 GMTKVPIGDQ 217 (775)
Q Consensus 208 GlTK~D~~~~ 217 (775)
+||+|+.+.
T Consensus 144 -iNK~Dl~~~ 152 (410)
T 1kk1_A 144 -QNKIELVDK 152 (410)
T ss_dssp -EECGGGSCH
T ss_pred -EECccCCCH
Confidence 899999863
No 165
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.43 E-value=4.1e-05 Score=84.07 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~ 55 (775)
..|++||..++|||||+|+|+|.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 36999999999999999999986
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.43 E-value=0.00031 Score=69.27 Aligned_cols=26 Identities=31% Similarity=0.672 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
...|+|||+.+|||||||+.|+|..|
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 45799999999999999999999876
No 167
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.42 E-value=0.0004 Score=73.99 Aligned_cols=136 Identities=22% Similarity=0.323 Sum_probs=63.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSN 113 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~ 113 (775)
.|+|||+.++||||||+.|.|....|.. |+ + . .+.... . +.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~-gi-~---~-----------------~g~~~~------~-----t~------ 60 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPER-VI-S---G-----------------AAEKIE------R-----TV------ 60 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-----------------------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCC-Cc-c---c-----------------CCcccC------C-----cc------
Confidence 4699999999999999999997443433 31 1 0 000000 0 00
Q ss_pred CcccccCeEEEEecCC-CcceEEEeCCCCCccCCC-CCcccHHHHHHHHHHHHhhccc-------------cEEEEEecC
Q psy3395 114 KGISNVPINLRVYSPN-VLNITLIDLPGLTKVPVG-DQPIDIEQQIKDMLFQFITKET-------------CLILAVTPA 178 (775)
Q Consensus 114 ~~~s~~~i~l~i~~p~-~~~LtlvDlPG~~~~~~~-~q~~di~~~i~~lv~~yi~~~~-------------~iILaV~~a 178 (775)
.+ ..+.+.+..++ .+.|+++|+||+...... ..-..+...+.+....|+.... ++++.+.|.
T Consensus 61 -~~--~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt 137 (301)
T 2qnr_A 61 -QI--EASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 137 (301)
T ss_dssp -------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS
T ss_pred -eE--eeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc
Confidence 00 01112222222 358999999998532110 1112233334444446765432 255666664
Q ss_pred CCCccchHHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 179 NTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 179 ~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
...+...+ ..+.+++.+ ....+.| ++|.|+..+
T Consensus 138 ~~~Ld~~~-~~~l~~l~~-~~~iilV----~~K~Dl~~~ 170 (301)
T 2qnr_A 138 GHGLKPLD-VAFMKAIHN-KVNIVPV----IAKADTLTL 170 (301)
T ss_dssp SSSCCHHH-HHHHHHHTT-TSCEEEE----ECCGGGSCH
T ss_pred ccCCCHHH-HHHHHHHHh-cCCEEEE----EEeCCCCCH
Confidence 43344444 356666654 3457788 899999753
No 168
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.42 E-value=7.8e-05 Score=86.81 Aligned_cols=131 Identities=23% Similarity=0.312 Sum_probs=70.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
...|.|+|+|..++|||||+++|+|..+.....|..|+-. +..+.+++.+ .. .
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~i-------------------g~~~~~~~~~----~~----~ 55 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHI-------------------GATEIPMDVI----EG----I 55 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBT-------------------TEEEEEHHHH----HH----H
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceeccc-------------------CeEEEeechh----hh----h
Confidence 3468999999999999999999998654333332333210 0001111111 11 1
Q ss_pred cCCC-CcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCcc--chH
Q psy3395 110 TGSN-KGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLA--TSD 186 (775)
Q Consensus 110 ~g~~-~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~--~s~ 186 (775)
.|.. +++. +. -..+.++|+|+||..... .++..|++..+.+||+ ++++..+. +-+
T Consensus 56 ~~~~~~~~~---v~-----~~~~~i~liDTPGhe~F~-------------~~~~r~~~~aD~aILV-vDa~~Gv~~qT~e 113 (594)
T 1g7s_A 56 CGDFLKKFS---IR-----ETLPGLFFIDTPGHEAFT-------------TLRKRGGALADLAILI-VDINEGFKPQTQE 113 (594)
T ss_dssp SCGGGGGCG---GG-----GTCCEEEEECCCTTSCCT-------------TSBCSSSBSCSEEEEE-EETTTCCCHHHHH
T ss_pred ccccccccc---cc-----cccCCEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEE-EECCCCccHhHHH
Confidence 1100 0000 00 112468999999974321 1233455666666555 45554433 334
Q ss_pred HHHHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 187 ALQIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 187 ~l~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+.+++. .+...+.| +||+|+.+
T Consensus 114 ~l~~l~~---~~vPiIVV----iNKiDl~~ 136 (594)
T 1g7s_A 114 ALNILRM---YRTPFVVA----ANKIDRIH 136 (594)
T ss_dssp HHHHHHH---TTCCEEEE----EECGGGST
T ss_pred HHHHHHH---cCCeEEEE----eccccccc
Confidence 5666665 34567888 99999974
No 169
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.41 E-value=6.9e-05 Score=83.08 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=22.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccC-cccccccEE
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLV 71 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~-g~~TR~p~~ 71 (775)
+|++||..++|||||+++|+|... ..+. -.||+-|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~-~~~~~p~tT~~~~~ 39 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANV 39 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-cccCCCCcccCCce
Confidence 689999999999999999999863 3222 246776654
No 170
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.40 E-value=0.00023 Score=80.82 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=43.1
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCcc--chHHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLA--TSDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~--~s~~l~lar~~DP~g~RtigVdLPG 208 (775)
..++|+|+||.. .....+..++...+.+||+|. |+.... +.+.+.+++.. |.+.+.|
T Consensus 73 ~~i~iiDtPGh~-------------~~~~~~~~~~~~aD~~ilVvd-a~~g~~~qt~e~l~~~~~~---~ip~Ivv---- 131 (482)
T 1wb1_A 73 YRITLVDAPGHA-------------DLIRAVVSAADIIDLALIVVD-AKEGPKTQTGEHMLILDHF---NIPIIVV---- 131 (482)
T ss_dssp EEEEECCCSSHH-------------HHHHHHHHHTTSCCEEEEEEE-TTTCSCHHHHHHHHHHHHT---TCCBCEE----
T ss_pred EEEEEEECCChH-------------HHHHHHHHHHhhCCEEEEEEe-cCCCccHHHHHHHHHHHHc---CCCEEEE----
Confidence 479999999941 223456677888887766654 544332 23445666653 4566888
Q ss_pred CcccCCCC
Q psy3395 209 MTKVPIGD 216 (775)
Q Consensus 209 lTK~D~~~ 216 (775)
+||+|+.+
T Consensus 132 iNK~Dl~~ 139 (482)
T 1wb1_A 132 ITKSDNAG 139 (482)
T ss_dssp EECTTSSC
T ss_pred EECCCccc
Confidence 99999986
No 171
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.40 E-value=0.00047 Score=75.67 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=39.5
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCcc--chHHHHHHHhcCCCCCcc-eeccCCC
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLA--TSDALQIAKQVDPDVLNL-TLVDLPG 208 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~--~s~~l~lar~~DP~g~Rt-igVdLPG 208 (775)
.++|+|+||..+ .+++ +..+++..+.+||+|. +..+. +.+.+.+++.. |.+. +.|
T Consensus 61 ~i~iiDtPGh~~------------f~~~-~~~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~~~---~i~~~ivv---- 118 (370)
T 2elf_A 61 NMVFVDAHSYPK------------TLKS-LITALNISDIAVLCIP--PQGLDAHTGECIIALDLL---GFKHGIIA---- 118 (370)
T ss_dssp EEEEEECTTTTT------------CHHH-HHHHHHTCSEEEEEEC--TTCCCHHHHHHHHHHHHT---TCCEEEEE----
T ss_pred EEEEEECCChHH------------HHHH-HHHHHHHCCEEEEEEc--CCCCcHHHHHHHHHHHHc---CCCeEEEE----
Confidence 588999999632 2233 3445677888877765 44443 33456666654 3344 788
Q ss_pred Cc-ccCC
Q psy3395 209 MT-KVPI 214 (775)
Q Consensus 209 lT-K~D~ 214 (775)
++ |+|+
T Consensus 119 vNNK~Dl 125 (370)
T 2elf_A 119 LTRSDST 125 (370)
T ss_dssp ECCGGGS
T ss_pred EEeccCC
Confidence 89 9999
No 172
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.38 E-value=0.00046 Score=76.48 Aligned_cols=131 Identities=18% Similarity=0.232 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
....|+++|..++|||||+++|++.. .-. |.... |. .+...+....+. ..
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~-~~~--g~~~~----------------~~-----~~~~~d~~~~e~------~~ 59 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVA-AAE--NPNVE----------------VK-----DYGDIDKAPEER------AR 59 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH-HHS--CTTSC----------------CC-----CHHHHSCSHHHH------HH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhh-hhc--Ccccc----------------cc-----chhhccCCHHHH------Hc
Confidence 45679999999999999999998731 000 00000 00 000001111111 11
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-cchHHHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-ATSDALQ 189 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-~~s~~l~ 189 (775)
| ++-+...+.+.. .-..++|+|+||... ....+..|+...+.+||+|.+.+... .+.+.+.
T Consensus 60 G----iTi~~~~~~~~~-~~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~ 121 (405)
T 2c78_A 60 G----ITINTAHVEYET-AKRHYSHVDCPGHAD-------------YIKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121 (405)
T ss_dssp T----CCCSCEEEEEEC-SSCEEEEEECCCSGG-------------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH
T ss_pred C----CCEEeeeeEecc-CCeEEEEEECCChHH-------------HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH
Confidence 2 222223333333 235799999999642 12356677888888877665443322 2233455
Q ss_pred HHHhcCCCCCc-ceeccCCCCcccCCCC
Q psy3395 190 IAKQVDPDVLN-LTLVDLPGMTKVPIGD 216 (775)
Q Consensus 190 lar~~DP~g~R-tigVdLPGlTK~D~~~ 216 (775)
+++.. +.+ .+.| +||+|+.+
T Consensus 122 ~~~~~---~ip~iivv----iNK~Dl~~ 142 (405)
T 2c78_A 122 LARQV---GVPYIVVF----MNKVDMVD 142 (405)
T ss_dssp HHHHT---TCCCEEEE----EECGGGCC
T ss_pred HHHHc---CCCEEEEE----EECccccC
Confidence 66653 344 6788 89999985
No 173
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.31 E-value=0.00051 Score=72.53 Aligned_cols=52 Identities=19% Similarity=0.427 Sum_probs=35.3
Q ss_pred ChhhhHHHHHHHHHHH----HHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 4 NPGLEQLIPIVNKLQD----AFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 4 ~~~m~~li~~~~~l~d----~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
+.+++.|+..+.++-. ....-|.. -.-.+|+|||..++|||||+|+|+|...
T Consensus 90 ~~gi~~L~~~i~~~l~~~~~~~~~~~~~--~~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 90 GQGLNQIVPASKEILQEKFDRMRAKGVK--PRAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CTTGGGHHHHHHHHHHHHHHHHHHTTCC--CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEEEecCCCchHHHHHHHhcCce
Confidence 4467777766555432 12233321 2345799999999999999999999764
No 174
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.31 E-value=0.00035 Score=70.75 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=22.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.|||||+.++||||||..+++-.|
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f 38 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSF 38 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCcCHHHHHHHHHhCCC
Confidence 599999999999999999997766
No 175
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.31 E-value=0.00011 Score=83.82 Aligned_cols=113 Identities=23% Similarity=0.314 Sum_probs=67.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhc
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRIT 110 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 110 (775)
..|.|+|+|..++|||||+++|.+..+.....+..|.-.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i----------------------------------------- 41 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHI----------------------------------------- 41 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCS-----------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeE-----------------------------------------
Confidence 368899999999999999999987554221111122100
Q ss_pred CCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHHH
Q psy3395 111 GSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDAL 188 (775)
Q Consensus 111 g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~l 188 (775)
+. .. +..+ -..++|+|+||..... .+...++...+.+||+|. |+... .+-+.+
T Consensus 42 ~~-~~---------v~~~-~~~i~~iDTPGhe~f~-------------~~~~~~~~~aD~aILVVd-a~~g~~~qT~e~l 96 (501)
T 1zo1_I 42 GA-YH---------VETE-NGMITFLDTPGHAAFT-------------SMRARGAQATDIVVLVVA-ADDGVMPQTIEAI 96 (501)
T ss_dssp SC-CC---------CCTT-SSCCCEECCCTTTCCT-------------TSBCSSSBSCSSEEEEEE-TTTBSCTTTHHHH
T ss_pred EE-EE---------EEEC-CEEEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEEee-cccCccHHHHHHH
Confidence 00 00 0001 1257899999964321 133455666777777664 44332 344566
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
..++.. +...+.| +||+|+.+
T Consensus 97 ~~~~~~---~vPiIVv----iNKiDl~~ 117 (501)
T 1zo1_I 97 QHAKAA---QVPVVVA----VNKIDKPE 117 (501)
T ss_dssp HHHHHT---TCCEEEE----EECSSSST
T ss_pred HHHHhc---CceEEEE----EEeccccc
Confidence 666653 4568888 89999964
No 176
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.31 E-value=0.00031 Score=77.53 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCcccc-CcccccccE
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRG-SGIVTRRPL 70 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~-~g~~TR~p~ 70 (775)
.+|++||..++|||||+++|+|..+ ..+ --.||.-|.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~ 60 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPN 60 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC--------------CCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCce
Confidence 5699999999999999999999875 332 235676664
No 177
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.30 E-value=0.00013 Score=79.95 Aligned_cols=41 Identities=22% Similarity=0.402 Sum_probs=30.6
Q ss_pred ChhhhHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 4 NPGLEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 4 ~~~m~~li~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
+.+++.|+..+.++. -+ ..|++||..++|||||+|+|+|..
T Consensus 144 g~gi~~L~~~l~~~~-----~~-------~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 144 GQGIAELADAIEYYR-----GG-------KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp CTTHHHHHHHHHHHH-----TT-------SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred CcCHHHHHhhhhhhc-----cc-------ceEEEecCCCCChhHHHHHHHhhh
Confidence 445666666665542 11 369999999999999999999863
No 178
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.28 E-value=0.00052 Score=77.43 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCC-CccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~-flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
....|++||..++|||||+++|++.. .++... + ... ..... ..|+...+++-+.+....+. .
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~-~-~~~------~~~~~-------~~g~~~~~~a~~~d~~~~er--~ 68 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRT-I-EKF------EKEAA-------ELGKGSFKYAWVLDKLKAER--E 68 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHH-H-HHH------HHHGG-------GGSSSCCCHHHHHHHHHHHH--H
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHH-H-HHh------hhhHH-------hcCCcchhhhhhhccchhHH--h
Confidence 34579999999999999999998641 111100 0 000 00000 00111112332222222111 1
Q ss_pred cCCCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-------
Q psy3395 110 TGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL------- 182 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~------- 182 (775)
.| ++-+.....+..+. ..++|+|+||... ....+..|++..+.+||+|...+...
T Consensus 69 ~G----iTi~~~~~~~~~~~-~~~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~ 130 (458)
T 1f60_A 69 RG----ITIDIALWKFETPK-YQVTVIDAPGHRD-------------FIKNMITGTSQADCAILIIAGGVGEFEAGISKD 130 (458)
T ss_dssp TT----CCCSCSCEEEECSS-EEEEEEECCCCTT-------------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTT
T ss_pred cC----cEEEEEEEEEecCC-ceEEEEECCCcHH-------------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcc
Confidence 12 22222222333333 4699999999421 23356677888887777665432211
Q ss_pred -cchHHHHHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 183 -ATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 183 -~~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
.+.+.+.+++..+ .+..+.| +||+|+.+
T Consensus 131 ~qt~~~~~~~~~~~--v~~iivv----iNK~Dl~~ 159 (458)
T 1f60_A 131 GQTREHALLAFTLG--VRQLIVA----VNKMDSVK 159 (458)
T ss_dssp SHHHHHHHHHHHTT--CCEEEEE----EECGGGGT
T ss_pred hhHHHHHHHHHHcC--CCeEEEE----EEcccccc
Confidence 2233455555532 1347888 99999984
No 179
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.27 E-value=0.001 Score=78.98 Aligned_cols=134 Identities=15% Similarity=0.120 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCC-CccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhh
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRI 109 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~-flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 109 (775)
..+.|+|||..++|||||+++|+... .+.+. |-+ ..+..+.|+.+..+ +
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~-g~v---------------------~~g~~~~D~~~~E~----~---- 58 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKI-GEV---------------------HDGAATMDWMEQEQ----E---- 58 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccc-ccc---------------------CCCceeecChhhHH----h----
Confidence 46789999999999999999996421 01110 100 01112233332211 0
Q ss_pred cCCCCcccccCeEEEEec----CCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCcc--
Q psy3395 110 TGSNKGISNVPINLRVYS----PNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLA-- 183 (775)
Q Consensus 110 ~g~~~~~s~~~i~l~i~~----p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~-- 183 (775)
.| -.+....+.+...+ .....+.|+|+||... ....+..++...+.+||.|-+ .....
T Consensus 59 rg--iTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~aIlVvDa-~~gv~~q 122 (704)
T 2rdo_7 59 RG--ITITSAATTAFWSGMAKQYEPHRINIIDTPGHVD-------------FTIEVERSMRVLDGAVMVYCA-VGGVQPQ 122 (704)
T ss_pred cC--ceeeeceEEEEECCccccCCceeEEEEeCCCccc-------------hHHHHHHHHHHCCEEEEEEeC-CCCCcHH
Confidence 01 11222223333321 1125799999999643 234567788888877666554 43332
Q ss_pred chHHHHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 184 TSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 184 ~s~~l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+...++.++. .+...+.| +||+|+...
T Consensus 123 t~~~~~~~~~---~~ip~ilv----iNKiD~~~~ 149 (704)
T 2rdo_7 123 SETVWRQANK---YKVPRIAF----VNKMDRMGA 149 (704)
T ss_pred HHHHHHHHHH---cCCCEEEE----EeCCCcccc
Confidence 2234444443 45677888 999998753
No 180
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.24 E-value=0.0013 Score=72.89 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
....|+++|..++|||||+++|+|.
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~ 31 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGV 31 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999986
No 181
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.23 E-value=0.00059 Score=66.97 Aligned_cols=26 Identities=31% Similarity=0.672 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
...|++||+.+|||||||+.|+|..|
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 45799999999999999999999875
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.22 E-value=0.00031 Score=83.35 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=43.0
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~lar~~DP~g~RtigVdLPG 208 (775)
..+.|+|+||.... ...+..|+...+.+|++|- +......+ ..+..++. .+...+.|
T Consensus 75 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~~llVvD-a~~g~~~~~~~~~~~~~~---~~~p~ilv---- 133 (693)
T 2xex_A 75 HRVNIIDTPGHVDF-------------TVEVERSLRVLDGAVTVLD-AQSGVEPQTETVWRQATT---YGVPRIVF---- 133 (693)
T ss_dssp EEEEEECCCCCSSC-------------CHHHHHHHHHCSEEEEEEE-TTTBSCHHHHHHHHHHHH---TTCCEEEE----
T ss_pred eeEEEEECcCCcch-------------HHHHHHHHHHCCEEEEEEC-CCCCCcHHHHHHHHHHHH---cCCCEEEE----
Confidence 57999999998542 1245667777777666554 44333322 34455554 45678899
Q ss_pred CcccCCCCC
Q psy3395 209 MTKVPIGDQ 217 (775)
Q Consensus 209 lTK~D~~~~ 217 (775)
++|+|+...
T Consensus 134 iNK~Dl~~~ 142 (693)
T 2xex_A 134 VNKMDKLGA 142 (693)
T ss_dssp EECTTSTTC
T ss_pred EECCCcccc
Confidence 999999864
No 183
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.21 E-value=0.001 Score=74.43 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=49.5
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCc
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMT 210 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlT 210 (775)
.++.|||+||.... .......++.+ ...+ +++. +|.|++|.. .+++...++.+++...-+..| +|
T Consensus 183 ~DvVIIDTaGrl~~-----d~~lm~el~~i-~~~~-~pd~-vlLVvDA~~---gq~a~~~a~~f~~~~~i~gVI----lT 247 (443)
T 3dm5_A 183 VDIIIVDTAGRHKE-----DKALIEEMKQI-SNVI-HPHE-VILVIDGTI---GQQAYNQALAFKEATPIGSII----VT 247 (443)
T ss_dssp CSEEEEECCCCSSC-----CHHHHHHHHHH-HHHH-CCSE-EEEEEEGGG---GGGHHHHHHHHHHSCTTEEEE----EE
T ss_pred CCEEEEECCCcccc-----hHHHHHHHHHH-HHhh-cCce-EEEEEeCCC---chhHHHHHHHHHhhCCCeEEE----EE
Confidence 58899999997542 12222233332 2233 4554 455666654 356777777777665555567 89
Q ss_pred ccCCCCChhcHHHHHh
Q psy3395 211 KVPIGDQPADIEYQIK 226 (775)
Q Consensus 211 K~D~~~~~~d~~~~l~ 226 (775)
|+|....+..+..+..
T Consensus 248 KlD~~~~gG~~ls~~~ 263 (443)
T 3dm5_A 248 KLDGSAKGGGALSAVA 263 (443)
T ss_dssp CCSSCSSHHHHHHHHH
T ss_pred CCCCcccccHHHHHHH
Confidence 9999877655555544
No 184
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.18 E-value=0.00082 Score=77.94 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=24.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
-..+.|+|||.+++|||||||+|+|..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 456789999999999999999999976
No 185
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.17 E-value=0.00073 Score=68.04 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
....|||||+.++|||||++.++|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34679999999999999999999854
No 186
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.16 E-value=0.00087 Score=74.12 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=42.7
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-cchHHHHHHHhcCCCCCc-ceeccCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-ATSDALQIAKQVDPDVLN-LTLVDLP 207 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-~~s~~l~lar~~DP~g~R-tigVdLP 207 (775)
-..++|+|+||.. .....+..|++..+.+||+|.+.+... .+.+.+.+++.. +.+ .+.|
T Consensus 65 ~~~~~iiDtpG~~-------------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~---~vp~iivv--- 125 (397)
T 1d2e_A 65 ARHYAHTDCPGHA-------------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI---GVEHVVVY--- 125 (397)
T ss_dssp SCEEEEEECSSHH-------------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT---TCCCEEEE---
T ss_pred CeEEEEEECCChH-------------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc---CCCeEEEE---
Confidence 3578999999952 123356677888887777665433222 223345666653 444 5788
Q ss_pred CCcccCCCC
Q psy3395 208 GMTKVPIGD 216 (775)
Q Consensus 208 GlTK~D~~~ 216 (775)
+||+|+.+
T Consensus 126 -iNK~Dl~~ 133 (397)
T 1d2e_A 126 -VNKADAVQ 133 (397)
T ss_dssp -EECGGGCS
T ss_pred -EECcccCC
Confidence 89999985
No 187
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.16 E-value=0.0012 Score=73.93 Aligned_cols=66 Identities=18% Similarity=0.320 Sum_probs=42.7
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-------ccch--HHHHHHHhcCCCCCcc
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-------LATS--DALQIAKQVDPDVLNL 201 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-------~~~s--~~l~lar~~DP~g~Rt 201 (775)
..++|+|+||..+ ....+..|+...+.+||+|...+ . +..+ ..+.+++... ..+.
T Consensus 84 ~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~--~~~i 147 (435)
T 1jny_A 84 YFFTIIDAPGHRD-------------FVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMG--LDQL 147 (435)
T ss_dssp CEEEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTT--CTTC
T ss_pred eEEEEEECCCcHH-------------HHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcC--CCeE
Confidence 4699999999632 22356678888888877665444 4 3222 3344555432 1356
Q ss_pred eeccCCCCcccCCCC
Q psy3395 202 TLVDLPGMTKVPIGD 216 (775)
Q Consensus 202 igVdLPGlTK~D~~~ 216 (775)
+.| +||+|+.+
T Consensus 148 ivv----iNK~Dl~~ 158 (435)
T 1jny_A 148 IVA----VNKMDLTE 158 (435)
T ss_dssp EEE----EECGGGSS
T ss_pred EEE----EEcccCCC
Confidence 788 89999986
No 188
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.14 E-value=0.00071 Score=78.71 Aligned_cols=131 Identities=15% Similarity=0.257 Sum_probs=68.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
++.|++||..++|||||+++|++.. |..++... +....|..+.. .+ .|
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~~------------------~~~~~D~~~~E--re------rG 53 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYT------GAISEREK------------------REQLLDTLDVE--RE------RG 53 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHH------TC-----------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcc------CCcccccc------------------cccccccchhh--hc------cc
Confidence 5679999999999999999997531 11121100 00111111110 00 01
Q ss_pred CCCcccccCeEEEEecCC--CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--H
Q psy3395 112 SNKGISNVPINLRVYSPN--VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--A 187 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~--~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~ 187 (775)
-.+......+....++ ...++|+|+||.... ...+..++...+.+||+| +|......+. .
T Consensus 54 --ITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF-------------~~ev~r~l~~aD~aILVV-Da~~gv~~qt~~~ 117 (600)
T 2ywe_A 54 --ITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF-------------SYEVSRALAACEGALLLI-DASQGIEAQTVAN 117 (600)
T ss_dssp ----CCCCSEEEEEECTTSCEEEEEEECCCCSGGG-------------HHHHHHHHHTCSEEEEEE-ETTTBCCHHHHHH
T ss_pred --ceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH-------------HHHHHHHHHhCCEEEEEE-ECCCCccHHHHHH
Confidence 1223334455544322 257899999997431 235667788888776654 4554443333 3
Q ss_pred HHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 188 l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+..+.. .+...+.| ++|+|+.+.
T Consensus 118 ~~~a~~---~~ipiIvv----iNKiDl~~a 140 (600)
T 2ywe_A 118 FWKAVE---QDLVIIPV----INKIDLPSA 140 (600)
T ss_dssp HHHHHH---TTCEEEEE----EECTTSTTC
T ss_pred HHHHHH---CCCCEEEE----EeccCcccc
Confidence 444444 35668888 999999753
No 189
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.13 E-value=0.00091 Score=73.29 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=28.6
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEE
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLV 71 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~ 71 (775)
..|++||..++|||||+++|+|.......--.||..|..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~ 40 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNV 40 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccce
Confidence 469999999999999999999864211222356777643
No 190
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.12 E-value=0.00061 Score=80.78 Aligned_cols=68 Identities=12% Similarity=0.052 Sum_probs=44.7
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC-ccchHHHHHHHhcCCCCCcceeccCCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD-LATSDALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d-~~~s~~l~lar~~DP~g~RtigVdLPG 208 (775)
-..++|+|+||... ....+..|+...+.+|++|-+.+.. ..+...+..++. .+...+.|
T Consensus 76 ~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~---~~~p~ivv---- 135 (691)
T 1dar_A 76 DHRINIIDTPGHVD-------------FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK---YKVPRIAF---- 135 (691)
T ss_dssp TEEEEEECCCSSTT-------------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH---TTCCEEEE----
T ss_pred CeEEEEEECcCccc-------------hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH---cCCCEEEE----
Confidence 35799999999743 1335677888888777765544332 222334555554 35678888
Q ss_pred CcccCCCCC
Q psy3395 209 MTKVPIGDQ 217 (775)
Q Consensus 209 lTK~D~~~~ 217 (775)
+||+|+...
T Consensus 136 iNKiD~~~~ 144 (691)
T 1dar_A 136 ANKMDKTGA 144 (691)
T ss_dssp EECTTSTTC
T ss_pred EECCCcccC
Confidence 999999753
No 191
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.10 E-value=0.00068 Score=78.89 Aligned_cols=131 Identities=16% Similarity=0.246 Sum_probs=65.4
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
+..|++||..++|||||+++|++.. |..++.- + +..+.|..+.. .+ .|
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~----~--------------~~~~~D~~~~E--re------rG 51 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQIC------GGLSDRE----M--------------EAQVLDSMDLE--RE------RG 51 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHT------TC-----------------------------------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc------CCccccc----c--------------cccccccchhh--hc------cc
Confidence 4679999999999999999998532 1222110 0 00111111110 00 01
Q ss_pred CCCcccccCeEEEEecC--CCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--H
Q psy3395 112 SNKGISNVPINLRVYSP--NVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--A 187 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p--~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~ 187 (775)
-.+....+.+..... ....++|+|+||... ....+..+++..+.+||+|. |......+. .
T Consensus 52 --iTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d-------------F~~ev~~~l~~aD~aILVVD-a~~gv~~qt~~~ 115 (599)
T 3cb4_D 52 --ITIKAQSVTLDYKASDGETYQLNFIDTPGHVD-------------FSYEVSRSLAACEGALLVVD-AGQGVEAQTLAN 115 (599)
T ss_dssp -------CEEEEEEECTTSCEEEEEEEECCCCGG-------------GHHHHHHHHHHCSEEEEEEE-TTTCCCTHHHHH
T ss_pred --ceeeeeEEEEEEecCCCCeEEEEEEECCCchH-------------HHHHHHHHHHHCCEEEEEEE-CCCCCCHHHHHH
Confidence 112223344444321 235789999999643 13356778888887766554 444433333 3
Q ss_pred HHHHHhcCCCCCcceeccCCCCcccCCCCC
Q psy3395 188 LQIAKQVDPDVLNLTLVDLPGMTKVPIGDQ 217 (775)
Q Consensus 188 l~lar~~DP~g~RtigVdLPGlTK~D~~~~ 217 (775)
+..+.. .+...+.| +||+|+.+.
T Consensus 116 ~~~~~~---~~ipiIvV----iNKiDl~~a 138 (599)
T 3cb4_D 116 CYTAME---MDLEVVPV----LNKIDLPAA 138 (599)
T ss_dssp HHHHHH---TTCEEEEE----EECTTSTTC
T ss_pred HHHHHH---CCCCEEEe----eeccCcccc
Confidence 444444 34568888 899999753
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.01 E-value=0.00056 Score=74.75 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=26.4
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCCccccCccccccc
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 69 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p 69 (775)
.+|++||..++|||||+++|+|..+....--.||+-|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 3699999999999999999999774222222567665
No 193
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.92 E-value=0.0038 Score=71.06 Aligned_cols=78 Identities=14% Similarity=0.154 Sum_probs=42.6
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCc-ceeccCCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLN-LTLVDLPGM 209 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~R-tigVdLPGl 209 (775)
.++.|||+||.... ..++...+... ..++ .++.+ +.|+.|.... +++..++.+... .. +..| +
T Consensus 184 ~DvvIIDTpG~~~~-----~~~l~~el~~~-~~~i-~pd~v-llVvDa~~g~---~~~~~a~~~~~~-~~i~gvV----l 247 (504)
T 2j37_W 184 FEIIIVDTSGRHKQ-----EDSLFEEMLQV-ANAI-QPDNI-VYVMDASIGQ---ACEAQAKAFKDK-VDVASVI----V 247 (504)
T ss_dssp CCEEEEEECCCCTT-----CHHHHHHHHHH-HHHH-CCSEE-EEEEETTCCT---THHHHHHHHHHH-HCCCCEE----E
T ss_pred CcEEEEeCCCCccc-----chhHHHHHHHH-Hhhh-cCceE-EEEEeccccc---cHHHHHHHHHhh-cCceEEE----E
Confidence 47899999998642 11222222222 2233 56655 5556665543 244555554432 23 4677 8
Q ss_pred cccCCCCChhcHHHH
Q psy3395 210 TKVPIGDQPADIEYQ 224 (775)
Q Consensus 210 TK~D~~~~~~d~~~~ 224 (775)
||+|....+..+..+
T Consensus 248 NK~D~~~~~g~~l~~ 262 (504)
T 2j37_W 248 TKLDGHAKGGGALSA 262 (504)
T ss_dssp ECTTSCCCCTHHHHH
T ss_pred eCCccccchHHHHHH
Confidence 999988665444443
No 194
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.90 E-value=8.4e-05 Score=86.61 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~ 55 (775)
..|++||..++|||||+++|++.
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 45999999999999999999763
No 195
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.88 E-value=0.0015 Score=64.19 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
...|++||+.++|||||++.++|.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999999974
No 196
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.84 E-value=0.00094 Score=75.59 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=47.6
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHH---HHHHHhh-ccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCC
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKD---MLFQFIT-KETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLP 207 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~---lv~~yi~-~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLP 207 (775)
++.|||++|.... ..+....+.+ .+..+.. .|..++|++. +.+ .++++..++.+.....-|..|
T Consensus 377 DvVLIDTaGrl~~-----~~~lm~EL~kiv~iar~l~~~~P~evLLvLD-att---Gq~al~~ak~f~~~~~itgvI--- 444 (503)
T 2yhs_A 377 DVLIADTAGRLQN-----KSHLMEELKKIVRVMKKLDVEAPHEVMLTID-AST---GQNAVSQAKLFHEAVGLTGIT--- 444 (503)
T ss_dssp SEEEECCCCSCCC-----HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEE-GGG---THHHHHHHHHHHHHTCCSEEE---
T ss_pred CEEEEeCCCccch-----hhhHHHHHHHHHHHHHHhccCCCCeeEEEec-Ccc---cHHHHHHHHHHHhhcCCCEEE---
Confidence 6889999998532 1112222222 2222222 3666666544 432 357777777765443456678
Q ss_pred CCcccCCCCChhcHHHHHhh
Q psy3395 208 GMTKVPIGDQPADIEYQIKS 227 (775)
Q Consensus 208 GlTK~D~~~~~~d~~~~l~~ 227 (775)
+||.|-...+..+..++..
T Consensus 445 -lTKLD~takgG~~lsi~~~ 463 (503)
T 2yhs_A 445 -LTKLDGTAKGGVIFSVADQ 463 (503)
T ss_dssp -EECGGGCSCCTHHHHHHHH
T ss_pred -EEcCCCcccccHHHHHHHH
Confidence 8999976666666666543
No 197
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.78 E-value=0.0027 Score=70.54 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
-+.++++|..||||||||++|+|.. +-..|.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~--~p~~Gs 99 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG--NEEEGA 99 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC--TTSTTS
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC--CccCce
Confidence 3479999999999999999999974 434443
No 198
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.75 E-value=0.0012 Score=72.88 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccc-cCcccccccEE
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPR-GSGIVTRRPLV 71 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr-~~g~~TR~p~~ 71 (775)
-..|++||..+||||||+++|+|..+.+. .--.||+-|..
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~ 60 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEE 60 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeeccee
Confidence 35799999999999999999999765222 22357777753
No 199
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.75 E-value=0.0029 Score=70.73 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=48.3
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGM 209 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGl 209 (775)
-+++.|||+||....+. .+ .....+..+ ...+ ++..++|+ ++|.. .+++...++.++....-+..| +
T Consensus 179 ~~DvvIIDTaGr~~~~~--d~-~lm~el~~i-~~~~-~pd~vlLV-lDa~~---gq~a~~~a~~f~~~~~~~gVI----l 245 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGE--ET-KLLEEMKEM-YDVL-KPDDVILV-IDASI---GQKAYDLASRFHQASPIGSVI----I 245 (433)
T ss_dssp TCSEEEEEECCCSSSCC--TT-HHHHHHHHH-HHHH-CCSEEEEE-EEGGG---GGGGHHHHHHHHHHCSSEEEE----E
T ss_pred CCCEEEEECCCCccccC--CH-HHHHHHHHH-HHhh-CCcceEEE-EeCcc---chHHHHHHHHHhcccCCcEEE----E
Confidence 46888999999754111 11 222233332 2223 45555554 44443 245556666655443445677 8
Q ss_pred cccCCCCChhcHHHHHhhcccc
Q psy3395 210 TKVPIGDQPADIEYQIKSMILQ 231 (775)
Q Consensus 210 TK~D~~~~~~d~~~~l~~~~~~ 231 (775)
||+|....+..+..+....-.|
T Consensus 246 TKlD~~a~~G~als~~~~~g~P 267 (433)
T 3kl4_A 246 TKMDGTAKGGGALSAVVATGAT 267 (433)
T ss_dssp ECGGGCSCHHHHHHHHHHHTCE
T ss_pred ecccccccchHHHHHHHHHCCC
Confidence 9999887765555544433344
No 200
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.74 E-value=0.0051 Score=72.60 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=74.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG 111 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 111 (775)
...|++||..++|||||+++|+|..+.-...|.+. .+....|+... +.+ . |
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~---------------------~g~~~~d~~~~--e~~---~---g 59 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVE---------------------EGTTTTDYTPE--AKL---H---R 59 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG---------------------GTCCSSCCSHH--HHH---T---T
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceec---------------------CCcccccCCHH--HHh---c---C
Confidence 45699999999999999999997543111112110 11122233221 111 0 1
Q ss_pred CCCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc--cchHHHH
Q psy3395 112 SNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL--ATSDALQ 189 (775)
Q Consensus 112 ~~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~--~~s~~l~ 189 (775)
-++... ...+.. .-..+.|+|+||... ....+..|++..+..||.+- +...+ .+...++
T Consensus 60 --iti~~~--~~~~~~-~~~~~nliDTpG~~~-------------f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~ 120 (665)
T 2dy1_A 60 --TTVRTG--VAPLLF-RGHRVFLLDAPGYGD-------------FVGEIRGALEAADAALVAVS-AEAGVQVGTERAWT 120 (665)
T ss_dssp --SCCSCE--EEEEEE-TTEEEEEEECCCSGG-------------GHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHH
T ss_pred --CeEEec--ceEEee-CCEEEEEEeCCCccc-------------hHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHH
Confidence 112222 222222 235789999999642 13467778888887777666 44333 3344566
Q ss_pred HHHhcCCCCCcceeccCCCCcccCCC
Q psy3395 190 IAKQVDPDVLNLTLVDLPGMTKVPIG 215 (775)
Q Consensus 190 lar~~DP~g~RtigVdLPGlTK~D~~ 215 (775)
.++. .+...+.| ++|+|+.
T Consensus 121 ~~~~---~~ip~ilv----~NKiD~~ 139 (665)
T 2dy1_A 121 VAER---LGLPRMVV----VTKLDKG 139 (665)
T ss_dssp HHHH---TTCCEEEE----EECGGGC
T ss_pred HHHH---ccCCEEEE----ecCCchh
Confidence 6655 45677888 9999987
No 201
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.74 E-value=0.0046 Score=76.21 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=42.9
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCc-cchHHHHHHHhcCCCCCc-ceeccCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL-ATSDALQIAKQVDPDVLN-LTLVDLP 207 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~-~~s~~l~lar~~DP~g~R-tigVdLP 207 (775)
...++|+|+||... ....+..|++..+.+||+|...+... .+.+.+.+++.. |.. .|.|
T Consensus 358 ~~kI~IIDTPGHed-------------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l---gIP~IIVV--- 418 (1289)
T 3avx_A 358 TRHYAHVDCPGHAD-------------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV---GVPYIIVF--- 418 (1289)
T ss_dssp SCEEEEEECCCHHH-------------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH---TCSCEEEE---
T ss_pred CEEEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc---CCCeEEEE---
Confidence 45789999999521 23456667888887777655433222 223445666653 334 5788
Q ss_pred CCcccCCCC
Q psy3395 208 GMTKVPIGD 216 (775)
Q Consensus 208 GlTK~D~~~ 216 (775)
+||+|+.+
T Consensus 419 -INKiDLv~ 426 (1289)
T 3avx_A 419 -LNKCDMVD 426 (1289)
T ss_dssp -EECCTTCC
T ss_pred -Eeeccccc
Confidence 89999985
No 202
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.61 E-value=0.0016 Score=78.92 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=41.5
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchH--HHHHHHhcCCCCCcceeccCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD--ALQIAKQVDPDVLNLTLVDLPG 208 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~--~l~lar~~DP~g~RtigVdLPG 208 (775)
..+.|+|+||.... ...+..|++..+.+||+|- +......+. .+..+.. .+...+.|
T Consensus 98 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVvD-a~~g~~~qt~~~~~~~~~---~~~p~ilv---- 156 (842)
T 1n0u_A 98 FLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVVD-TIEGVCVQTETVLRQALG---ERIKPVVV---- 156 (842)
T ss_dssp EEEEEECCCCCCSS-------------CHHHHHHHHTCSEEEEEEE-TTTBSCHHHHHHHHHHHH---TTCEEEEE----
T ss_pred ceEEEEECcCchhh-------------HHHHHHHHHhCCEEEEEEe-CCCCCCHHHHHHHHHHHH---cCCCeEEE----
Confidence 46899999997542 2257778888887776655 444333333 2333332 35567888
Q ss_pred CcccCCC
Q psy3395 209 MTKVPIG 215 (775)
Q Consensus 209 lTK~D~~ 215 (775)
++|+|+.
T Consensus 157 iNK~D~~ 163 (842)
T 1n0u_A 157 INKVDRA 163 (842)
T ss_dssp EECHHHH
T ss_pred EECCCcc
Confidence 8999986
No 203
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.60 E-value=0.0021 Score=72.71 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=37.1
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCC--------ccchHHHHHHHhcCCCCC-cc
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTD--------LATSDALQIAKQVDPDVL-NL 201 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d--------~~~s~~l~lar~~DP~g~-Rt 201 (775)
..++|+|+||... ....+..+++..+.+||+|...+.. -.+.+.+.+++.. |. +.
T Consensus 121 ~~~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~---~vp~i 184 (467)
T 1r5b_A 121 RRFSLLDAPGHKG-------------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHL 184 (467)
T ss_dssp EEEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSE
T ss_pred eEEEEEECCCcHH-------------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc---CCCEE
Confidence 4789999999632 1234556778888777766544321 1233455555553 33 47
Q ss_pred eeccCCCCcccCCCC
Q psy3395 202 TLVDLPGMTKVPIGD 216 (775)
Q Consensus 202 igVdLPGlTK~D~~~ 216 (775)
+.| +||+|+.+
T Consensus 185 ivv----iNK~Dl~~ 195 (467)
T 1r5b_A 185 VVV----INKMDEPS 195 (467)
T ss_dssp EEE----EECTTSTT
T ss_pred EEE----EECccCCC
Confidence 888 99999964
No 204
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.60 E-value=0.0012 Score=68.89 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
.++++||..++||||++++|+|..+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6899999999999999999999764
No 205
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.57 E-value=0.00047 Score=73.68 Aligned_cols=89 Identities=15% Similarity=0.146 Sum_probs=47.3
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHH---HHHHhhc-cccEEEEEecCCCCccchHHHHHHHhcCCCCCcceecc
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDM---LFQFITK-ETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVD 205 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~l---v~~yi~~-~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVd 205 (775)
-+++.|+|+||.... ...+...++.+ +.+.+.. +..++| |+.|. ..++++..++.+.....-+-.|
T Consensus 186 ~~dvvIiDtpg~~~~-----~~~l~~eL~~l~~~i~~~i~~~p~~vll-Vlda~---t~~~~l~~a~~~~~~~~i~gvV- 255 (306)
T 1vma_A 186 NKDVVIIDTAGRLHT-----KKNLMEELRKVHRVVKKKIPDAPHETLL-VIDAT---TGQNGLVQAKIFKEAVNVTGII- 255 (306)
T ss_dssp TCSEEEEEECCCCSC-----HHHHHHHHHHHHHHGGGTCTTCCSEEEE-EEEGG---GHHHHHHHHHHHHHHSCCCEEE-
T ss_pred CCCEEEEECCCchhh-----HHHHHHHHHHHHHHHhhccCCCCcEEEE-EEECC---CCHHHHHHHHHHHhcCCCCEEE-
Confidence 357899999995221 11222223222 2222232 554544 55554 3356666666654332334456
Q ss_pred CCCCcccCCCCChhcHHHHHhhcccc
Q psy3395 206 LPGMTKVPIGDQPADIEYQIKSMILQ 231 (775)
Q Consensus 206 LPGlTK~D~~~~~~d~~~~l~~~~~~ 231 (775)
+||.|-...+..+..+....-.|
T Consensus 256 ---lTk~D~~~~gG~~l~~~~~~~~P 278 (306)
T 1vma_A 256 ---LTKLDGTAKGGITLAIARELGIP 278 (306)
T ss_dssp ---EECGGGCSCTTHHHHHHHHHCCC
T ss_pred ---EeCCCCccchHHHHHHHHHHCCC
Confidence 79999877766666665544344
No 206
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.50 E-value=0.006 Score=67.87 Aligned_cols=25 Identities=32% Similarity=0.516 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
.+.|++||..+|||||||++|+|..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Confidence 3568999999999999999999974
No 207
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.42 E-value=0.0055 Score=66.01 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=45.1
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcc
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTK 211 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK 211 (775)
++.++|++|..... ......+..+..... ++-.++++ .+.+ .++++..++.+.....-|..| +||
T Consensus 213 d~vliDtaG~~~~~-----~~l~~eL~~i~ral~--~de~llvL-Da~t---~~~~~~~~~~~~~~~~it~ii----lTK 277 (328)
T 3e70_C 213 DVVLIDTAGRSETN-----RNLMDEMKKIARVTK--PNLVIFVG-DALA---GNAIVEQARQFNEAVKIDGII----LTK 277 (328)
T ss_dssp SEEEEEECCSCCTT-----TCHHHHHHHHHHHHC--CSEEEEEE-EGGG---TTHHHHHHHHHHHHSCCCEEE----EEC
T ss_pred hhhHHhhccchhHH-----HHHHHHHHHHHHHhc--CCCCEEEE-ecHH---HHHHHHHHHHHHHhcCCCEEE----EeC
Confidence 56689999985421 122223333332222 34343433 3332 367888887766544566788 899
Q ss_pred cCCCCChhcHHHHHhh
Q psy3395 212 VPIGDQPADIEYQIKS 227 (775)
Q Consensus 212 ~D~~~~~~d~~~~l~~ 227 (775)
.|-...+..+..++..
T Consensus 278 lD~~a~~G~~l~~~~~ 293 (328)
T 3e70_C 278 LDADARGGAALSISYV 293 (328)
T ss_dssp GGGCSCCHHHHHHHHH
T ss_pred cCCccchhHHHHHHHH
Confidence 9976555555555443
No 208
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.24 E-value=0.027 Score=59.63 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+++|.+|+||||++..|.+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999985
No 209
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.21 E-value=0.0023 Score=66.13 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCC---------CCchHHHHHHhhCC
Q psy3395 30 MDLPQIAVVGGQ---------SAGKSSVLENFVGR 55 (775)
Q Consensus 30 i~lP~IvVvG~q---------SsGKSSvLeal~G~ 55 (775)
-..-.|+|||+. ++|||||++++++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 344579999999 99999999999993
No 210
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.19 E-value=0.0063 Score=66.10 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
..+.|+++|..++||||++++|++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999853
No 211
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.18 E-value=0.004 Score=66.34 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=45.9
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcc
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTK 211 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK 211 (775)
+..++|++|..... ...+..+.++-..+....+.+|.-++| |..+.+. ++++..++.+.-....|+.| +||
T Consensus 186 d~~llDt~G~~~~~-~~~~~eLs~~r~~iaRal~~~P~~~lL-vLDa~t~---~~~~~~~~~~~~~~~~t~ii----vTh 256 (304)
T 1rj9_A 186 DLLFVDTAGRLHTK-HNLMEELKKVKRAIAKADPEEPKEVWL-VLDAVTG---QNGLEQAKKFHEAVGLTGVI----VTK 256 (304)
T ss_dssp SEEEECCCCCCTTC-HHHHHHHHHHHHHHHHHCTTCCSEEEE-EEETTBC---THHHHHHHHHHHHHCCSEEE----EEC
T ss_pred CEEEecCCCCCCch-HHHHHHHHHHHHHHHHhhcCCCCeEEE-EEcHHHH---HHHHHHHHHHHHHcCCcEEE----EEC
Confidence 46699999985421 111233333222233344455665555 4444332 44555555443222357788 899
Q ss_pred cCCCCChhcHHHHHh
Q psy3395 212 VPIGDQPADIEYQIK 226 (775)
Q Consensus 212 ~D~~~~~~d~~~~l~ 226 (775)
.|-...+..+..+..
T Consensus 257 ~d~~a~gg~~l~i~~ 271 (304)
T 1rj9_A 257 LDGTAKGGVLIPIVR 271 (304)
T ss_dssp TTSSCCCTTHHHHHH
T ss_pred CcccccccHHHHHHH
Confidence 997766655555544
No 212
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.99 E-value=0.005 Score=69.01 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
+--|.|||.+++|||+|||.|+|.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 344889999999999999999975
No 213
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.83 E-value=0.016 Score=64.80 Aligned_cols=78 Identities=19% Similarity=0.159 Sum_probs=43.2
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHH-HHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCC
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDML-FQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGM 209 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv-~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGl 209 (775)
.++.|||+||..... .. ....|. ..++..+..++|+| .|.. .+++...++.+++...-+-.| +
T Consensus 184 ~D~VIIDTpG~l~~~-----~~---l~~~L~~~~~~~~p~~vllVv-da~~---g~~~~~~~~~f~~~l~i~gvV----l 247 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVD-----EA---MMDEIKQVHASINPVETLFVV-DAMT---GQDAANTAKAFNEALPLTGVV----L 247 (433)
T ss_dssp CSEEEEECCCCCTTC-----HH---HHHHHHHHHHHSCCSEEEEEE-ETTB---CTTHHHHHHHHHHHSCCCCEE----E
T ss_pred CCEEEEECCCccccc-----HH---HHHHHHHHHHhhcCcceeEEe-ecch---hHHHHHHHHHHhccCCCeEEE----E
Confidence 478999999965321 11 222222 13344677666644 4443 256677777766432223346 7
Q ss_pred cccCCCCChhcHHHH
Q psy3395 210 TKVPIGDQPADIEYQ 224 (775)
Q Consensus 210 TK~D~~~~~~d~~~~ 224 (775)
||+|....+..+..+
T Consensus 248 nK~D~~~~~g~~l~i 262 (433)
T 2xxa_A 248 TKVDGDARGGAALSI 262 (433)
T ss_dssp ECTTSSSCCTHHHHH
T ss_pred ecCCCCccHHHHHHH
Confidence 999986555434343
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.83 E-value=0.025 Score=63.19 Aligned_cols=82 Identities=17% Similarity=0.138 Sum_probs=45.5
Q ss_pred CCcceEEEeCCCCCccCCCCCcccHHHHHHHHHH-HHhhccccEEEEEecCCCCccchHHHHHHHhcCCCC-CcceeccC
Q psy3395 129 NVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLF-QFITKETCLILAVTPANTDLATSDALQIAKQVDPDV-LNLTLVDL 206 (775)
Q Consensus 129 ~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~-~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g-~RtigVdL 206 (775)
.-.++.|||+||.... . ......|.. ..+..++.+ +.|+.|... +++...++.+.+.. .-+..|
T Consensus 179 ~~~D~vIIDT~G~~~~-----~---~~l~~~l~~i~~~~~~d~v-llVvda~~g---~~~~~~~~~~~~~~~~i~gvV-- 244 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE-----E---KGLLEEMKQIKEITNPDEI-ILVIDGTIG---QQAGIQAKAFKEAVGEIGSII-- 244 (432)
T ss_dssp SSCSEEEEECCCSCSS-----H---HHHHHHHHHTTSSSCCSEE-EEEEEGGGG---GGHHHHHHHHHTTSCSCEEEE--
T ss_pred hCCCEEEEcCCCCccc-----c---HHHHHHHHHHHHHhcCcce-eEEeecccc---HHHHHHHHHHhhcccCCeEEE--
Confidence 3458999999997541 1 112232311 111245554 456655543 35666677666543 336778
Q ss_pred CCCcccCCCCChhcHHHHHh
Q psy3395 207 PGMTKVPIGDQPADIEYQIK 226 (775)
Q Consensus 207 PGlTK~D~~~~~~d~~~~l~ 226 (775)
+||+|....+..+..+..
T Consensus 245 --lnK~D~~~~~g~~l~~~~ 262 (432)
T 2v3c_C 245 --VTKLDGSAKGGGALSAVA 262 (432)
T ss_dssp --EECSSSCSTTHHHHHHHH
T ss_pred --EeCCCCccchHHHHHHHH
Confidence 899998765544444433
No 215
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=95.77 E-value=0.051 Score=58.38 Aligned_cols=72 Identities=15% Similarity=0.330 Sum_probs=43.1
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch-H----HHHHHHhcCCCCCcceec
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS-D----ALQIAKQVDPDVLNLTLV 204 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s-~----~l~lar~~DP~g~RtigV 204 (775)
...|.+.|+||--+... |. + +...|.++.+++|+++-..+. +.+. + .+..+++..|. ...+.|
T Consensus 45 ~v~LqIWDTAGQErf~~---~~-l------~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~-ipillv 112 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFE---PS-Y------DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPS-INIEVL 112 (331)
T ss_dssp SSCEEEEECCSCSSSCC---CS-H------HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTT-CEEEEE
T ss_pred EEEEEEEECCCchhccc---hh-h------hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCC-CcEEEE
Confidence 36799999999644210 00 0 356788888888776544333 2221 1 13334445663 566777
Q ss_pred cCCCCcccCCCCC
Q psy3395 205 DLPGMTKVPIGDQ 217 (775)
Q Consensus 205 dLPGlTK~D~~~~ 217 (775)
.+|.|+.+.
T Consensus 113 ----gNK~DL~~~ 121 (331)
T 3r7w_B 113 ----IHKVDGLSE 121 (331)
T ss_dssp ----CCCCCSSCS
T ss_pred ----EECcccCch
Confidence 799999864
No 216
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.72 E-value=0.081 Score=56.60 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=47.7
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHH---HHHHHHHHhhc-cccEEEEEecCCCCccchHHHHHHHhcCCCCCcceecc
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQ---IKDMLFQFITK-ETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVD 205 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~---i~~lv~~yi~~-~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVd 205 (775)
-.++.|||+||..... ...... +...+...+.. ++.+ +.|+.|.. .++++..++.+.+...-+=.|
T Consensus 191 ~yD~VIIDTpg~l~~~-----~~l~~eL~~~~~vi~~~~p~~~d~v-llVl~a~~---~~~~l~~~~~~~~~~~i~GvV- 260 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNK-----TNLMAELEKMNKIIQQVEKSAPHEV-LLVIDATT---GQNGVIQAEEFSKVADVSGII- 260 (320)
T ss_dssp TCSEEEEECCCCGGGH-----HHHHHHHHHHHHHHHTTCTTCCSEE-EEEEEGGG---THHHHHHHHHHTTTSCCCEEE-
T ss_pred CCCEEEEcCCCccccc-----HHHHHHHHHHHHHHhcccCCCCceE-EEEEECCC---cHHHHHHHHHHhhcCCCcEEE-
Confidence 3589999999975421 111111 11222222222 4444 44555553 367778888877653333345
Q ss_pred CCCCcccCCCCChhcHHHHHhhcccc
Q psy3395 206 LPGMTKVPIGDQPADIEYQIKSMILQ 231 (775)
Q Consensus 206 LPGlTK~D~~~~~~d~~~~l~~~~~~ 231 (775)
+||.|....+..+..++...-.|
T Consensus 261 ---ltk~d~~~~~g~~~~~~~~~~~P 283 (320)
T 1zu4_A 261 ---LTKMDSTSKGGIGLAIKELLNIP 283 (320)
T ss_dssp ---EECGGGCSCTTHHHHHHHHHCCC
T ss_pred ---EeCCCCCCchhHHHHHHHHHCcC
Confidence 69999766655555554433334
No 217
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.64 E-value=0.0036 Score=64.26 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhh
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~ 53 (775)
...+-++++|..|+||||++++|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 456778999999999999999998
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.43 E-value=0.095 Score=55.45 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=45.1
Q ss_pred cceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCc
Q psy3395 131 LNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMT 210 (775)
Q Consensus 131 ~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlT 210 (775)
.++.|||+||....+. ...+...++.+ ... ..++.++|.+ .+.. .++++..++.+.+...-+..| +|
T Consensus 181 ~D~ViIDTpg~~~~~~---~~~l~~el~~i-~~~-~~~d~vllVv-da~~---g~~~~~~~~~~~~~~~i~gvV----ln 247 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGE---EAALLEEMKNI-YEA-IKPDEVTLVI-DASI---GQKAYDLASKFNQASKIGTII----IT 247 (297)
T ss_dssp CSEEEEECCCSCCTTC---HHHHHHHHHHH-HHH-HCCSEEEEEE-EGGG---GGGHHHHHHHHHHTCTTEEEE----EE
T ss_pred CCEEEEeCCCCccccc---HHHHHHHHHHH-HHH-hcCCEEEEEe-eCCc---hHHHHHHHHHHHhhCCCCEEE----Ee
Confidence 4789999999864100 11111122221 222 3456565554 4442 356777777766532225567 79
Q ss_pred ccCCCCChhcHHHHHh
Q psy3395 211 KVPIGDQPADIEYQIK 226 (775)
Q Consensus 211 K~D~~~~~~d~~~~l~ 226 (775)
|+|....+..+..+..
T Consensus 248 k~D~~~~~g~~~~~~~ 263 (297)
T 1j8m_F 248 KMDGTAKGGGALSAVA 263 (297)
T ss_dssp CGGGCTTHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHH
Confidence 9998766554444443
No 219
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.25 E-value=0.064 Score=61.72 Aligned_cols=129 Identities=14% Similarity=0.241 Sum_probs=65.9
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeecc--CCccccChHHHHHHHHHHHhhhcCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHC--KGKKFVDFDEVRREIEAETDRITGS 112 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~--~~~~~~d~~~v~~~i~~~~~~~~g~ 112 (775)
|++||.-.+|||||.|+|+-.. |...|. +..-.. .+....|+.++.++ +
T Consensus 34 iaIiaHvdaGKTTLtE~lL~~t------G~i~~~-------------G~V~~~~~~~~~~~D~~~~Ere--R-------- 84 (548)
T 3vqt_A 34 FAIISHPDAGKTTLTEKLLLFG------GAIQMA-------------GSVKARKAARHATSDWMAMERE--R-------- 84 (548)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT------TCHHHH-------------HHHHHC---------------------------
T ss_pred EEEEeCCCCCHHHHHHHHHHhc------Cccccc-------------ceeecCccccccccCChHHHHH--C--------
Confidence 9999999999999999996211 111110 000000 00123344433221 1
Q ss_pred CCcccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCcc--chHHHHH
Q psy3395 113 NKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLA--TSDALQI 190 (775)
Q Consensus 113 ~~~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~--~s~~l~l 190 (775)
+-.+....+.++.. -..+.|||+||-... ..+ |.+-++--+..||.|. |..... +..+++.
T Consensus 85 GITI~s~~~~~~~~---~~~iNlIDTPGHvDF-----~~E--------v~raL~~~DgAvlVvd-a~~GV~~qT~~v~~~ 147 (548)
T 3vqt_A 85 GISVTTSVMQFPYR---DRVVNLLDTPGHQDF-----SED--------TYRVLTAVDSALVVID-AAKGVEAQTRKLMDV 147 (548)
T ss_dssp ---CTTTEEEEEET---TEEEEEECCCCGGGC-----SHH--------HHHHHHSCSEEEEEEE-TTTBSCHHHHHHHHH
T ss_pred CCcEeeceEEEEEC---CEEEEEEeCCCcHHH-----HHH--------HHHHHHhcCceEEEee-cCCCcccccHHHHHH
Confidence 11233445555543 246889999997542 222 2333444566655544 444443 3346777
Q ss_pred HHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 191 AKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 191 ar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
|++ .+...+.+ ++|+|+..
T Consensus 148 a~~---~~lp~i~f----INK~Dr~~ 166 (548)
T 3vqt_A 148 CRM---RATPVMTF----VNKMDREA 166 (548)
T ss_dssp HHH---TTCCEEEE----EECTTSCC
T ss_pred HHH---hCCceEEE----Eecccchh
Confidence 766 45677888 89999864
No 220
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.23 E-value=0.015 Score=64.86 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=45.6
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGM 209 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGl 209 (775)
-.++.|||+||.... + ......+.. +...+ .+..++|+ +.+.+ .++++..++.+++...-+-.| +
T Consensus 180 ~~DvVIIDTaG~l~~---d--~~l~~el~~-i~~~~-~pd~vlLV-vDa~t---gq~av~~a~~f~~~l~i~GVI----l 244 (425)
T 2ffh_A 180 ARDLILVDTAGRLQI---D--EPLMGELAR-LKEVL-GPDEVLLV-LDAMT---GQEALSVARAFDEKVGVTGLV----L 244 (425)
T ss_dssp TCSEEEEECCCCSSC---C--HHHHHHHHH-HHHHH-CCSEEEEE-EEGGG---TTHHHHHHHHHHHHTCCCEEE----E
T ss_pred CCCEEEEcCCCcccc---c--HHHHHHHHH-hhhcc-CCceEEEE-Eeccc---hHHHHHHHHHHHhcCCceEEE----E
Confidence 347899999997542 1 111111111 12222 46666554 44443 377888887776543334457 7
Q ss_pred cccCCCCChhcHHHHHh
Q psy3395 210 TKVPIGDQPADIEYQIK 226 (775)
Q Consensus 210 TK~D~~~~~~d~~~~l~ 226 (775)
||.|-...+..+..+..
T Consensus 245 TKlD~~~~~g~alsi~~ 261 (425)
T 2ffh_A 245 TKLDGDARGGAALSARH 261 (425)
T ss_dssp ESGGGCSSCHHHHHHHH
T ss_pred eCcCCcccHHHHHHHHH
Confidence 99997655544444443
No 221
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.95 E-value=0.031 Score=60.88 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=45.6
Q ss_pred ceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCCcc
Q psy3395 132 NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGMTK 211 (775)
Q Consensus 132 ~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGlTK 211 (775)
+..++|+.|+.... ...+.++..+-..+....+.+|.-++|.+- +.+. .|+...++.+......|+.| +||
T Consensus 242 d~~lldt~Gl~~~~-~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttg---lD~~~~~~~~~~~~g~t~ii----iTh 312 (359)
T 2og2_A 242 DVVLCDTSGRLHTN-YSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTG---LNMLPQAREFNEVVGITGLI----LTK 312 (359)
T ss_dssp SEEEEECCCCSSCC-HHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGG---GGGHHHHHHHHHHTCCCEEE----EES
T ss_pred HHHHHHhcCCChhh-hhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCC---CCHHHHHHHHHHhcCCeEEE----Eec
Confidence 34689999985431 111223332222333444556775555444 4332 23333344433222357788 899
Q ss_pred cCCCCChhcHHHHHhh
Q psy3395 212 VPIGDQPADIEYQIKS 227 (775)
Q Consensus 212 ~D~~~~~~d~~~~l~~ 227 (775)
.|-...+-.+..++..
T Consensus 313 lD~~~~gG~~lsi~~~ 328 (359)
T 2og2_A 313 LDGSARGGCVVSVVEE 328 (359)
T ss_dssp CTTCSCTHHHHHHHHH
T ss_pred CcccccccHHHHHHHH
Confidence 9987777666665543
No 222
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=94.21 E-value=0.041 Score=64.50 Aligned_cols=127 Identities=18% Similarity=0.232 Sum_probs=68.8
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNK 114 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~ 114 (775)
|++||.-.+|||||.|+|+-. +|...+.- . . ..+..+.|+.+..++ + | -
T Consensus 5 i~IiaHvD~GKTTL~e~LL~~------~G~i~~~g-------------~-v-~~g~~~~D~~~~Ere--R------G--I 53 (638)
T 3j25_A 5 IGVLAHVDAGKTTLTESLLYN------SGAITELG-------------S-V-DKGTTRTDNTLLERQ--R------G--I 53 (638)
T ss_dssp CEEECCSTTSSHHHHHHHHHH------HTCCSSCS-------------S-C-CCSCCSTTCSTTHHH--H------S--S
T ss_pred EEEEcCCCCCHHHHHHHHHHH------cCCCcccc-------------c-c-ccCCcccCCcHHHHh--C------C--C
Confidence 799999999999999999511 01111100 0 0 012234455443321 1 1 1
Q ss_pred cccccCeEEEEecCCCcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccch--HHHHHHH
Q psy3395 115 GISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS--DALQIAK 192 (775)
Q Consensus 115 ~~s~~~i~l~i~~p~~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s--~~l~lar 192 (775)
.+....+.++.. -..+.|||+||-... .. -+.+-++--+..||. ++|...+..| .+++.|+
T Consensus 54 TI~s~~~~~~~~---~~~iNlIDTPGH~DF-----~~--------Ev~raL~~~DgavlV-VDa~~GV~~qT~~v~~~a~ 116 (638)
T 3j25_A 54 TIQTGITSFQWE---NTKVNIIDTPGHMDF-----LA--------EVYRSLSVLDGAILL-ISAKDGVQAQTRILFHALR 116 (638)
T ss_dssp CSSCCCCCCBCS---SCBCCCEECCCSSST-----HH--------HHHHHHTTCSEEECC-EESSCTTCSHHHHHHHHHH
T ss_pred cEEeeeEEEEEC---CEEEEEEECCCcHHH-----HH--------HHHHHHHHhCEEEEE-EeCCCCCcHHHHHHHHHHH
Confidence 222233333322 245889999996432 11 233334455555554 4555554443 4677776
Q ss_pred hcCCCCCcceeccCCCCcccCCCC
Q psy3395 193 QVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 193 ~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+ .|.+.+.+ ++|+|+..
T Consensus 117 ~---~~lp~i~~----INKmDr~~ 133 (638)
T 3j25_A 117 K---MGIPTIFF----INKIDQNG 133 (638)
T ss_dssp H---HTCSCEEC----CEECCSSS
T ss_pred H---cCCCeEEE----Eecccccc
Confidence 6 35567888 99999864
No 223
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.07 E-value=0.04 Score=58.24 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=47.0
Q ss_pred CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccchHHHHHHHhcCCCCCcceeccCCCC
Q psy3395 130 VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLNLTLVDLPGM 209 (775)
Q Consensus 130 ~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~s~~l~lar~~DP~g~RtigVdLPGl 209 (775)
-+++.|+|+||.... + ......+..+.. .+ .+..++| |+.+.. .++++..++.+.+...-+-.| +
T Consensus 180 ~~D~viiDtpp~~~~---d--~~~~~~l~~~~~-~~-~~~~~~l-v~~~~~---~~~~~~~~~~~~~~~~i~giv----l 244 (295)
T 1ls1_A 180 ARDLILVDTAGRLQI---D--EPLMGELARLKE-VL-GPDEVLL-VLDAMT---GQEALSVARAFDEKVGVTGLV----L 244 (295)
T ss_dssp TCCEEEEECCCCSSC---C--HHHHHHHHHHHH-HH-CCSEEEE-EEEGGG---THHHHHHHHHHHHHTCCCEEE----E
T ss_pred CCCEEEEeCCCCccc---c--HHHHHHHHHHhh-hc-CCCEEEE-EEeCCC---cHHHHHHHHHHhhcCCCCEEE----E
Confidence 358999999996532 1 111122222222 22 4555554 444443 367777777665532223346 7
Q ss_pred cccCCCCChhcHHHHHhhcccc
Q psy3395 210 TKVPIGDQPADIEYQIKSMILQ 231 (775)
Q Consensus 210 TK~D~~~~~~d~~~~l~~~~~~ 231 (775)
||.|....+..+..++...-.|
T Consensus 245 nk~d~~~~~g~~~~~~~~~~~p 266 (295)
T 1ls1_A 245 TKLDGDARGGAALSARHVTGKP 266 (295)
T ss_dssp ECGGGCSSCHHHHHHHHHHCCC
T ss_pred ECCCCCccHHHHHHHHHHHCcC
Confidence 9999876665555655443344
No 224
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.90 E-value=0.13 Score=54.52 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.9
Q ss_pred Ce-EEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQ-IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~-IvVvG~qSsGKSSvLeal~G~ 55 (775)
|+ |++||.+||||||++..|.|.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 44 789999999999999999996
No 225
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=93.67 E-value=0.072 Score=63.23 Aligned_cols=130 Identities=13% Similarity=0.154 Sum_probs=66.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccccccEEEEEeeccccceeeeccCCccccChHHHHHHHHHHHhhhcCCCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNK 114 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p~~l~l~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~ 114 (775)
|+|||.-.+|||||.|+|+-. +|...| .-.+ ..+..++|+.+..+ ++ +-
T Consensus 16 i~IiaHvd~GKTTL~d~LL~~------~g~i~~-~g~v--------------~~~~~~~D~~~~E~--eR--------GI 64 (709)
T 4fn5_A 16 IGICAHVDAGKTTTTERVLFY------TGVNHK-LGEV--------------HDGAATTDWMVQEQ--ER--------GI 64 (709)
T ss_dssp EEEECCSSSCHHHHHHHHHHH------HHHHHH-C---------------------------------------------
T ss_pred EEEEcCCCCCHHHHHHHHHHh------cCCCCc-Ccee--------------cCCCccCCChHHHH--Hc--------CC
Confidence 899999999999999999721 122111 0000 01123345443322 11 12
Q ss_pred cccccCeEEEEecCC----CcceEEEeCCCCCccCCCCCcccHHHHHHHHHHHHhhccccEEEEEecCCCCccc--hHHH
Q psy3395 115 GISNVPINLRVYSPN----VLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLAT--SDAL 188 (775)
Q Consensus 115 ~~s~~~i~l~i~~p~----~~~LtlvDlPG~~~~~~~~q~~di~~~i~~lv~~yi~~~~~iILaV~~a~~d~~~--s~~l 188 (775)
.+...++.+...+.. -.-+.|||+||-... ..++ .+-++--+..||. ++|...+.. ..++
T Consensus 65 TI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF-----~~Ev--------~~aLr~~Dgavlv-VDaveGV~~qT~~v~ 130 (709)
T 4fn5_A 65 TITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF-----TIEV--------ERSLRVLDGAVVV-FCGTSGVEPQSETVW 130 (709)
T ss_dssp ---CCEEEEEECCTTSCSCCEEEEEECCCSCTTC-----HHHH--------HHHHHHCSEEEEE-EETTTCSCHHHHHHH
T ss_pred eEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc-----HHHH--------HHHHHHhCeEEEE-EECCCCCchhHHHHH
Confidence 234456666665443 235899999996532 2222 2233334555554 445444433 3466
Q ss_pred HHHHhcCCCCCcceeccCCCCcccCCCC
Q psy3395 189 QIAKQVDPDVLNLTLVDLPGMTKVPIGD 216 (775)
Q Consensus 189 ~lar~~DP~g~RtigVdLPGlTK~D~~~ 216 (775)
+.|.+ .+.+.+.| ++|+|+..
T Consensus 131 ~~a~~---~~lp~i~~----iNKiDr~~ 151 (709)
T 4fn5_A 131 RQANK---YGVPRIVY----VNKMDRQG 151 (709)
T ss_dssp HHHHH---HTCCEEEE----EECSSSTT
T ss_pred HHHHH---cCCCeEEE----EccccccC
Confidence 76665 46778888 99999864
No 226
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.54 E-value=0.034 Score=56.78 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=23.7
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||..|+|. ++-.+|.
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl--~~p~~G~ 61 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCL--DKPTEGE 61 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTS--SCCSEEE
T ss_pred EEEECCCCCcHHHHHHHHhcC--CCCCceE
Confidence 789999999999999999996 3555554
No 227
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.47 E-value=0.043 Score=56.27 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=24.1
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||..|+|. ++-.+|.+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i 59 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLERF--YQPTAGEI 59 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTTS--SCCSBSCE
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCCcEE
Confidence 789999999999999999997 35455643
No 228
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.37 E-value=0.043 Score=57.19 Aligned_cols=29 Identities=34% Similarity=0.590 Sum_probs=24.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
+++||..+|||||||++|+|. ++-.+|.+
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl--~~p~~G~I 68 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGY--LSPSHGEC 68 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSS--SCCSSCEE
T ss_pred EEEECCCCCcHHHHHHHHhcC--CCCCCcEE
Confidence 789999999999999999997 35556643
No 229
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.33 E-value=0.035 Score=56.19 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=23.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||+.|+|.. |-.+|.
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~--~p~~G~ 60 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLD--APTEGK 60 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSS--CCSEEE
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCceE
Confidence 6899999999999999999973 445554
No 230
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.27 E-value=0.04 Score=55.51 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=24.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||+.|+|. ++-.+|.+
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl--~~p~~G~I 66 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTY--LKPLKGEI 66 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTS--SCCSEEEE
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCCeEE
Confidence 789999999999999999997 35555644
No 231
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.25 E-value=0.04 Score=57.03 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=24.1
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||+.|+|. +|-.+|.+
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl--~~p~~G~i 64 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGF--LKADEGRV 64 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTS--SCCSEEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC--CCCCCcEE
Confidence 789999999999999999997 35455643
No 232
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.20 E-value=0.041 Score=55.89 Aligned_cols=30 Identities=37% Similarity=0.602 Sum_probs=24.9
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+|||||||+.|+|. ++-.+|.++
T Consensus 37 ~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~ 66 (229)
T 2pze_A 37 LAVAGSTGAGKTSLLMMIMGE--LEPSEGKIK 66 (229)
T ss_dssp EEEECCTTSSHHHHHHHHTTS--SCCSEEEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC--CcCCccEEE
Confidence 789999999999999999997 455566543
No 233
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.01 E-value=0.071 Score=56.21 Aligned_cols=54 Identities=17% Similarity=-0.002 Sum_probs=31.9
Q ss_pred CCCChhhhHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 1 MAGNPGLEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 1 ~~~~~~m~~li~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
|||+. |..+=.++..|-+.+.+.-....-.-.-|+|+|.++||||||.+.|.+.
T Consensus 1 ~~~~~-~~~~~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 1 MCDKS-KTVLDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp ----C-CCHHHHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred Ccchh-HhHHHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56665 6655555555555444420011112335889999999999999999985
No 234
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.99 E-value=0.045 Score=56.79 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=24.0
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||.+|+|. ++-.+|.+
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl--~~p~~G~i 63 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFL--EKPSEGAI 63 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTS--SCCSEEEE
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCCcEE
Confidence 689999999999999999997 35455643
No 235
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.95 E-value=0.047 Score=56.16 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=23.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||+.|+|.- +-.+|.
T Consensus 38 ~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~ 65 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQRFY--IPENGQ 65 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS--CCSEEE
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCCcE
Confidence 7899999999999999999973 444553
No 236
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.94 E-value=0.047 Score=55.96 Aligned_cols=30 Identities=33% Similarity=0.362 Sum_probs=24.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
.++++|..+|||||||..|+|.. +-.+|.+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~--~p~~G~i 55 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV--KPDRGEV 55 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCceEE
Confidence 37899999999999999999973 4445543
No 237
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.94 E-value=0.048 Score=55.83 Aligned_cols=29 Identities=24% Similarity=0.503 Sum_probs=24.0
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||+.|+|.. +-.+|.+
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i 63 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLV--RAQKGKI 63 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS--CCSEEEE
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCCceE
Confidence 7899999999999999999973 4455543
No 238
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.94 E-value=0.041 Score=56.26 Aligned_cols=29 Identities=38% Similarity=0.591 Sum_probs=24.3
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||+.|+|. +|-.+|.+
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~I 62 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLLSALLAE--MDKVEGHV 62 (237)
T ss_dssp EEEECSTTSSHHHHHHHHTTC--SEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCCceE
Confidence 789999999999999999997 35555644
No 239
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.93 E-value=0.046 Score=57.26 Aligned_cols=29 Identities=41% Similarity=0.751 Sum_probs=24.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||.+|+|. +|-.+|.+
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl--~~p~~G~I 65 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGI--LKPSSGRI 65 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTS--SCCSEEEE
T ss_pred EEEECCCCCCHHHHHHHHHcC--CCCCCeEE
Confidence 789999999999999999996 35555643
No 240
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.87 E-value=0.049 Score=59.23 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=25.6
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++|+|..||||||+|++|.|. +|...|.+|
T Consensus 178 i~ivG~sGsGKSTll~~l~~~--~~~~~g~I~ 207 (361)
T 2gza_A 178 IVVAGETGSGKTTLMKALMQE--IPFDQRLIT 207 (361)
T ss_dssp EEEEESSSSCHHHHHHHHHTT--SCTTSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHhc--CCCCceEEE
Confidence 999999999999999999995 466666554
No 241
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.86 E-value=0.046 Score=58.75 Aligned_cols=30 Identities=23% Similarity=0.619 Sum_probs=25.7
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++|+|..+|||||+|++|.|. +|..+|.+|
T Consensus 174 v~i~G~~GsGKTTll~~l~g~--~~~~~g~i~ 203 (330)
T 2pt7_A 174 VIVCGGTGSGKTTYIKSIMEF--IPKEERIIS 203 (330)
T ss_dssp EEEEESTTSCHHHHHHHGGGG--SCTTSCEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC--CcCCCcEEE
Confidence 899999999999999999996 466667554
No 242
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.72 E-value=0.052 Score=56.64 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=23.9
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||..|+|. ++-.+|.+
T Consensus 48 ~~i~G~nGsGKSTLlk~l~Gl--~~p~~G~I 76 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAALLQNL--YQPTGGKV 76 (271)
T ss_dssp EEEECSTTSSHHHHHHHHTTS--SCCSEEEE
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCCCEE
Confidence 789999999999999999997 35455543
No 243
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.69 E-value=0.053 Score=56.40 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.0
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||..|+|. ++-.+|.+
T Consensus 53 ~~liG~NGsGKSTLlk~l~Gl--~~p~~G~I 81 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNLL--EDFDEGEI 81 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTS--SCCSEEEE
T ss_pred EEEEcCCCCcHHHHHHHHHcC--CCCCCcEE
Confidence 789999999999999999997 35455543
No 244
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.68 E-value=0.05 Score=56.04 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=23.9
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||+.|+|...++-.+|.
T Consensus 32 ~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~ 61 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAGDPEYTVERGE 61 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHTCTTCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCceE
Confidence 789999999999999999997323444554
No 245
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.67 E-value=0.053 Score=56.03 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=25.7
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+|||||||+.|+|. +|-.+|.++
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~I~ 63 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLGI--HRPIQGKIE 63 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTTS--SCCSEEEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC--CCCCCcEEE
Confidence 789999999999999999997 455677665
No 246
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.61 E-value=0.055 Score=56.04 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=24.0
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||+.|+|.. +-.+|.+
T Consensus 44 ~~l~G~NGsGKSTLlk~l~Gl~--~p~~G~I 72 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIISTLI--KPSSGIV 72 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS--CCSEEEE
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCCceEE
Confidence 7899999999999999999973 5455543
No 247
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.56 E-value=0.057 Score=56.17 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=23.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||+.|+|. +|-.+|.
T Consensus 36 ~~liG~nGsGKSTLl~~i~Gl--~~p~~G~ 63 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAGL--IEPTSGD 63 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTTS--SCCSEEE
T ss_pred EEEECCCCCcHHHHHHHHhCC--CCCCCcE
Confidence 679999999999999999997 3545554
No 248
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.52 E-value=0.057 Score=56.65 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=24.0
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||+.|+|. +|-.+|.+
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl--~~p~~G~I 78 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAY--EPATSGTV 78 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTS--SCCSEEEE
T ss_pred EEEECCCCCcHHHHHHHHhCC--CCCCCeEE
Confidence 789999999999999999997 35455543
No 249
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.17 E-value=0.056 Score=58.52 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-+.|.|+++|..+||||||||+|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999985
No 250
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.17 E-value=0.067 Score=55.15 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=20.6
Q ss_pred EEEEcCCCCchHHHHHHhhCCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~ 56 (775)
++++|..+|||||||+.|+|.-
T Consensus 29 ~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 7899999999999999999974
No 251
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.96 E-value=0.068 Score=55.63 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=23.4
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||+.|+|....+-.+|.
T Consensus 49 ~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~ 78 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSATLAGREDYEVTGGT 78 (267)
T ss_dssp EEEECCTTSSHHHHHHHHHTCTTCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCCeE
Confidence 789999999999999999997312334453
No 252
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.95 E-value=0.067 Score=60.98 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=26.6
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
|+|+|..||||||+|++|+|. +|.+.|++|
T Consensus 263 i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 899999999999999999995 577777765
No 253
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.63 E-value=0.066 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.-.+++|..+|||||+|+||.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999999875
No 254
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.61 E-value=0.071 Score=52.80 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
++++|..+||||||+++|+|.
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999996
No 255
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.55 E-value=0.064 Score=57.06 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=23.6
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
+++||..+|||||||..|.|. ++-.+|.
T Consensus 83 vaivG~sGsGKSTLl~ll~gl--~~p~~G~ 110 (306)
T 3nh6_A 83 LALVGPSGAGKSTILRLLFRF--YDISSGC 110 (306)
T ss_dssp EEEESSSCHHHHHHHHHHTTS--SCCSEEE
T ss_pred EEEECCCCchHHHHHHHHHcC--CCCCCcE
Confidence 789999999999999999996 4545553
No 256
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.37 E-value=0.077 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.+++||..|||||||++.|.|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3899999999999999999994
No 257
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.37 E-value=0.078 Score=55.95 Aligned_cols=29 Identities=38% Similarity=0.621 Sum_probs=24.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|..+|||||||..|+|. ++-.+|.+
T Consensus 67 ~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~I 95 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLMMIMGE--LEPSEGKI 95 (290)
T ss_dssp EEEEESTTSSHHHHHHHHTTS--SCEEEEEE
T ss_pred EEEECCCCCcHHHHHHHHhcC--CCCCCcEE
Confidence 789999999999999999997 35455644
No 258
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=91.22 E-value=0.22 Score=55.68 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.7
Q ss_pred eEEEEcCCCCchHHHHHHhh
Q psy3395 34 QIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~ 53 (775)
-|.|+|.+++|||.|||.|.
T Consensus 69 vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 69 AVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHH
Confidence 36789999999999999775
No 259
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.06 E-value=0.087 Score=50.95 Aligned_cols=22 Identities=9% Similarity=0.505 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+++|..+||||||++.|.|.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999985
No 260
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.05 E-value=0.096 Score=50.08 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=23.1
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
++++|+.+||||||+.+|+|. +|. +|.+
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~--l~~-~G~V 63 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQG--IGH-QGNV 63 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--TTC-CSCC
T ss_pred EEEECCCCCCHHHHHHHHHHh--CCC-CCeE
Confidence 789999999999999999996 363 3543
No 261
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.98 E-value=0.088 Score=53.12 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
++++|..|||||||+++|.|.
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999996
No 262
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.82 E-value=0.094 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+++|..|||||||+..|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 3889999999999999999996
No 263
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.80 E-value=0.11 Score=51.72 Aligned_cols=22 Identities=14% Similarity=0.519 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-||++|..+||||||+++|.+.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999975
No 264
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.74 E-value=0.096 Score=51.84 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
..|.|+|+|..++||||++++|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999999999999975
No 265
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.70 E-value=0.12 Score=51.39 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
..|.|+|+|..++||||+++.|++..|
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999997643
No 266
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.64 E-value=0.094 Score=51.93 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.|+|+|.++||||||+..|.|.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999996
No 267
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.59 E-value=0.11 Score=50.58 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.++++|..+|||||||..|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999995
No 268
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.59 E-value=0.12 Score=49.79 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=20.2
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
|+++|..+||||||++.|+|.
T Consensus 12 i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 889999999999999999996
No 269
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.51 E-value=0.1 Score=50.64 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=20.0
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
|+++|..+||||||++.|+|.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999995
No 270
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.49 E-value=0.16 Score=55.14 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
.++++|..++||||||++|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999999964
No 271
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.43 E-value=0.13 Score=55.96 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=23.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||+.|.|.. +-.+|.
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~--~p~~G~ 71 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE--RPTKGD 71 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS--CCSEEE
T ss_pred EEEECCCCCcHHHHHHHHhCCC--CCCccE
Confidence 7899999999999999999974 444553
No 272
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.34 E-value=0.13 Score=56.04 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=23.3
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||++|.|.. +-.+|.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~--~p~~G~ 59 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIY--KPTSGK 59 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS--CCSEEE
T ss_pred EEEECCCCchHHHHHHHHhcCC--CCCceE
Confidence 7899999999999999999974 444553
No 273
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.14 E-value=0.15 Score=52.87 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=20.6
Q ss_pred EEEEcCCCCchHHHHHHhhCCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~ 56 (775)
++++|..+|||||||..|+|.-
T Consensus 49 ~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 49 CALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999974
No 274
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.13 E-value=0.14 Score=56.03 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=23.7
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||..|.|.. +-.+|.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~--~p~~G~ 59 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLE--EPSRGQ 59 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS--CCSEEE
T ss_pred EEEECCCCcHHHHHHHHHHcCC--CCCccE
Confidence 7899999999999999999973 545554
No 275
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.13 E-value=0.14 Score=55.73 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.0
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSG 63 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g 63 (775)
++++|..+|||||||..|.|.. +-.+|
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~--~p~~G 58 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIY--KPTSG 58 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS--CCSEE
T ss_pred EEEEcCCCchHHHHHHHHHCCC--CCCcc
Confidence 7899999999999999999973 44455
No 276
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.13 E-value=0.13 Score=55.93 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=23.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||.+|.|.. +-.+|.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~--~p~~G~ 60 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE--QPDSGE 60 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS--CCSEEE
T ss_pred EEEECCCCchHHHHHHHHhcCC--CCCCcE
Confidence 7899999999999999999974 445553
No 277
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.11 E-value=0.14 Score=48.34 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCchHHHHHHhh
Q psy3395 33 PQIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~ 53 (775)
+-.+++|..+|||||+|+||.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 457999999999999999986
No 278
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.11 E-value=0.12 Score=51.86 Aligned_cols=23 Identities=17% Similarity=0.641 Sum_probs=21.1
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLP 59 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flP 59 (775)
+++||..+||||||++.|.|. +|
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g~--~p 48 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLNE--FP 48 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--ST
T ss_pred EEEECCCCCCHHHHHHHHHhh--CC
Confidence 789999999999999999995 36
No 279
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.06 E-value=0.15 Score=50.47 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+++|..+||||||++.|.+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999986
No 280
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.94 E-value=0.14 Score=55.99 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=23.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||..|.|.. +-.+|.
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~--~p~~G~ 59 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLE--TITSGD 59 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS--CCSEEE
T ss_pred EEEEcCCCchHHHHHHHHHcCC--CCCCeE
Confidence 7899999999999999999974 445553
No 281
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.94 E-value=0.17 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
.++++|..+|||||||++|.|..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 47999999999999999999975
No 282
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.72 E-value=0.15 Score=55.63 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=23.0
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSG 63 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g 63 (775)
++++|..+|||||||..|.|.. +-.+|
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~--~p~~G 66 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLE--EPTEG 66 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS--CCSEE
T ss_pred EEEECCCCChHHHHHHHHHcCC--CCCce
Confidence 7899999999999999999973 44455
No 283
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.61 E-value=0.16 Score=55.37 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=23.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
+++||..+|||||||.+|.|.. +-.+|.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~--~p~~G~ 84 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLE--RPTEGS 84 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS--CCSEEE
T ss_pred EEEEcCCCchHHHHHHHHhcCC--CCCceE
Confidence 7899999999999999999974 444553
No 284
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.48 E-value=0.12 Score=55.83 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=23.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||+.|.|.. +-.+|.
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~--~p~~G~ 56 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFH--VPDSGR 56 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSS--CCSEEE
T ss_pred EEEECCCCccHHHHHHHHHcCC--CCCCcE
Confidence 7899999999999999999974 444553
No 285
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.42 E-value=0.17 Score=49.18 Aligned_cols=24 Identities=21% Similarity=0.492 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.|.|+++|..+||||||++.|.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 688999999999999999999975
No 286
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.24 E-value=0.19 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
.++++|..+|||||||..|+|..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999973
No 287
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.21 E-value=0.14 Score=50.37 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.|+++|..+||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999995
No 288
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.17 E-value=0.15 Score=50.13 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=19.3
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
||++|..||||+||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999753
No 289
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.84 E-value=0.16 Score=55.85 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=23.0
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSG 63 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g 63 (775)
++++|..+|||||||.+|.|. +| .+|
T Consensus 50 ~~llGpsGsGKSTLLr~iaGl--~~-~~G 75 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLRL--LN-TEG 75 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHTC--SE-EEE
T ss_pred EEEECCCCChHHHHHHHHhCC--CC-CCe
Confidence 799999999999999999996 46 555
No 290
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.78 E-value=0.12 Score=56.00 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=23.6
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||+.|.|.. +-.+|.
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~--~p~~G~ 61 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLD--VPSTGE 61 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSS--CCSEEE
T ss_pred EEEECCCCCcHHHHHHHHhCCC--CCCceE
Confidence 7899999999999999999973 445553
No 291
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.66 E-value=0.15 Score=50.99 Aligned_cols=29 Identities=17% Similarity=0.080 Sum_probs=24.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+|||||||..|+|. - | .+|.+.
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl-~-p-~~G~I~ 53 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ-A-L-QSKQVS 53 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH-H-H-HTTSCS
T ss_pred EEEECCCCCCHHHHHHHHhcC-C-C-cCCeee
Confidence 789999999999999999996 2 4 456554
No 292
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=88.57 E-value=0.1 Score=55.56 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
.++++|..++||||||++|+|..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 58999999999999999999974
No 293
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.48 E-value=0.19 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
-|+++|..+|||||+++.|.|.-
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 48999999999999999999963
No 294
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.16 E-value=0.25 Score=47.38 Aligned_cols=20 Identities=20% Similarity=0.503 Sum_probs=17.8
Q ss_pred EEEEcCCCCchHHHHHHhhC
Q psy3395 35 IAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G 54 (775)
++++|..+|||||+++++.+
T Consensus 12 ~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEECCTTSCHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHcc
Confidence 78999999999999998653
No 295
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.14 E-value=0.2 Score=47.44 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.|+++|..+||||||+..|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999875
No 296
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.12 E-value=0.12 Score=50.01 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~ 55 (775)
+.++|||..+||||||++.|.|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999996
No 297
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.12 E-value=0.17 Score=49.77 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.-|+++|..+|||||+.+.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 34899999999999999999863
No 298
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.07 E-value=0.21 Score=50.77 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCchHHHHHHhh---CCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFV---GRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~---G~~f 57 (775)
..|+++|..+|||||++..|+ |...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 469999999999999999999 9753
No 299
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.92 E-value=0.28 Score=48.52 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=23.7
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSG 63 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g 63 (775)
++++|..+||||+|+..|+|.-..|.+.|
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 78999999999999999999543455554
No 300
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.92 E-value=0.2 Score=51.83 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=20.1
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
++|+|..+|||||+|.+|.|.
T Consensus 28 v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 889999999999999999995
No 301
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.51 E-value=0.34 Score=51.16 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
.++++|..+|||||||++|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 47999999999999999999 53
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=87.26 E-value=0.24 Score=48.55 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+++|..+||||||++.|.|.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999874
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.23 E-value=0.19 Score=50.36 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=14.9
Q ss_pred eEEEEcCCCCchHHHHHHhh-CC
Q psy3395 34 QIAVVGGQSAGKSSVLENFV-GR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~-G~ 55 (775)
-|+++|..+||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 38899999999999999999 86
No 304
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.12 E-value=0.24 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.+++||..+||||||+..|.|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 3889999999999999999995
No 305
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.02 E-value=0.24 Score=52.69 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCCCe-EEEEcCCCCchHHHHHHhhCC
Q psy3395 30 MDLPQ-IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 30 i~lP~-IvVvG~qSsGKSSvLeal~G~ 55 (775)
+.-+. |+++|.+|||||||++.|.|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 44554 679999999999999999996
No 306
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.94 E-value=0.26 Score=47.57 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEEcCCCCchHHHHHHhhC
Q psy3395 35 IAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G 54 (775)
|+++|..+|||||++..|.+
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 78999999999999999987
No 307
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.93 E-value=0.37 Score=55.24 Aligned_cols=31 Identities=23% Similarity=0.406 Sum_probs=25.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|..+|||||||++|+|. ++-.+|.++
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~i~ 344 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV--EEPTEGKIE 344 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS--SCCSBCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCeEEE
Confidence 3789999999999999999996 455566554
No 308
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=86.87 E-value=0.3 Score=53.09 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G 54 (775)
++-.-.+++|..+|||||+||||+.
T Consensus 21 ~~~g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 21 FQSGITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4445688999999999999999983
No 309
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.64 E-value=0.36 Score=55.31 Aligned_cols=30 Identities=30% Similarity=0.553 Sum_probs=25.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
++++|..+|||||||++|+|. ++-.+|.++
T Consensus 297 ~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~ 326 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVGE--ITADEGSVT 326 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTS--SCCSBCCEE
T ss_pred EEEECCCCCCHHHHHHHHhCC--CCCCCcEEE
Confidence 789999999999999999996 455667554
No 310
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=86.51 E-value=0.29 Score=46.58 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+++|..+|||||+...|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4899999999999999999763
No 311
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.50 E-value=0.28 Score=49.39 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
|+++|..+|||||+++.|.|.
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 899999999999999999986
No 312
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.49 E-value=0.27 Score=52.89 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-..++++|..+|||||||++|+|.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999985
No 313
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.26 E-value=0.35 Score=55.85 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=23.6
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
+++||..|||||||++.|.|. ++-.+|.
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~--~~p~~G~ 399 (582)
T 3b5x_A 372 VALVGRSGSGKSTIANLFTRF--YDVDSGS 399 (582)
T ss_pred EEEECCCCCCHHHHHHHHhcC--CCCCCCE
Confidence 789999999999999999996 3545553
No 314
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=86.23 E-value=0.29 Score=50.15 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=25.5
Q ss_pred CeEEEEcCCCCchHHHHHHhh---CCCCccccCcccc
Q psy3395 33 PQIAVVGGQSAGKSSVLENFV---GRDFLPRGSGIVT 66 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~---G~~flPr~~g~~T 66 (775)
..|+++|..|||||||+..|. |..+ .++|...
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~ 62 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIY 62 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCcee
Confidence 469999999999999999999 9754 3444443
No 315
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.20 E-value=0.3 Score=48.01 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=23.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSG 63 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g 63 (775)
.++++|.++|||||++..|.|. ++ .+|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~--~~-~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV--LK-SSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH--HH-HTT
T ss_pred EEEEECCCCChHHHHHHHHHhh--cc-cCC
Confidence 3889999999999999999995 46 666
No 316
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.12 E-value=0.43 Score=55.54 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=25.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|..+|||||||.+|+|. ++-.+|.++
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~I~ 414 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV--EEPTEGKVE 414 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS--SCCSBSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCceEEE
Confidence 3789999999999999999996 455566554
No 317
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=85.98 E-value=0.32 Score=56.26 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
+++||..|||||||++.|.|. ++..+|.
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g~--~~p~~G~ 399 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITRF--YDIDEGH 399 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTTT--TCCSEEE
T ss_pred EEEECCCCCCHHHHHHHHhhc--cCCCCCe
Confidence 789999999999999999996 3545553
No 318
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.97 E-value=0.38 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHhh
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~ 53 (775)
+-+-.+++|..+|||||+|+||.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Confidence 33457999999999999999986
No 319
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=85.82 E-value=0.3 Score=55.12 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=24.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
-++++|..+|||||||.+|.|. ++-.+|.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~I 60 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTA--LIPDLTLL 60 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH--HCCCTTTC
T ss_pred eEEEECCCCCcHHHHHHHHhcC--CCCCCCEE
Confidence 3789999999999999999996 34455543
No 320
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=85.79 E-value=3 Score=50.82 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=17.4
Q ss_pred EEEEcCCCCchHHHHHHh
Q psy3395 35 IAVVGGQSAGKSSVLENF 52 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal 52 (775)
++++|..+|||||+|..|
T Consensus 665 ~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999999999
No 321
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=85.65 E-value=0.3 Score=56.55 Aligned_cols=28 Identities=36% Similarity=0.471 Sum_probs=23.3
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
+++||..|||||||++.|.|. ++-.+|.
T Consensus 373 ~~ivG~sGsGKSTLl~~l~g~--~~p~~G~ 400 (595)
T 2yl4_A 373 TALVGPSGSGKSTVLSLLLRL--YDPASGT 400 (595)
T ss_dssp EEEECCTTSSSTHHHHHHTTS--SCCSEEE
T ss_pred EEEECCCCCCHHHHHHHHhcC--cCCCCcE
Confidence 689999999999999999996 3545553
No 322
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.65 E-value=0.44 Score=54.60 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.3
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
+++||..+|||||||..|+|.- +-++|.
T Consensus 50 ~~LvG~NGaGKSTLlk~l~Gl~--~p~~G~ 77 (538)
T 1yqt_A 50 VGIVGPNGTGKSTAVKILAGQL--IPNLCG 77 (538)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS--CCCTTT
T ss_pred EEEECCCCCCHHHHHHHHhCCC--CCCCCc
Confidence 7899999999999999999973 434454
No 323
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=85.62 E-value=0.29 Score=56.48 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=23.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
+++||..|||||||++.|.|. ++-.+|.
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~--~~p~~G~ 397 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRF--YDVTSGQ 397 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTS--SCCSEEE
T ss_pred EEEECCCCChHHHHHHHHhcC--CCCCCcE
Confidence 689999999999999999996 4555553
No 324
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=85.55 E-value=0.3 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
.+++||..|||||||++.|.|.-
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999973
No 325
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=85.44 E-value=0.34 Score=49.22 Aligned_cols=26 Identities=38% Similarity=0.515 Sum_probs=21.2
Q ss_pred CCCCe-EEEEcCCCCchHHHHHHhhCC
Q psy3395 30 MDLPQ-IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 30 i~lP~-IvVvG~qSsGKSSvLeal~G~ 55 (775)
+.-+. |.++|..+||||||+..|.|.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44443 789999999999999999884
No 326
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=85.37 E-value=0.69 Score=45.33 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+++|..+|||||+++.|.|.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 327
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.36 E-value=0.33 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+|+|..+|||||+|.+|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3899999999999999999995
No 328
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.35 E-value=0.33 Score=56.18 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=23.6
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
+++||..+||||||++.|.|. ++..+|.
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~--~~~~~G~ 399 (587)
T 3qf4_A 372 VAVLGETGSGKSTLMNLIPRL--IDPERGR 399 (587)
T ss_dssp EEEECSSSSSHHHHHHTTTTS--SCCSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC--ccCCCcE
Confidence 789999999999999999996 4555553
No 329
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.20 E-value=0.34 Score=56.18 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=23.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.+++||..|||||||+..|.|. ++-.+|.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~--~~p~~G~ 411 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF--YDVDRGQ 411 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS--SCCSEEE
T ss_pred EEEEECCCCCcHHHHHHHHhcC--cCCCCeE
Confidence 3799999999999999999996 3545553
No 330
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.14 E-value=0.52 Score=45.59 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.|.|+++|.++||||+|++.|.+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999874
No 331
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=84.96 E-value=0.37 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+++|..+||||||..+|.|.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999985
No 332
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=84.93 E-value=0.34 Score=54.40 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCCCccccCc
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG 63 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g 63 (775)
=+.++|+|..+||||||+..|+|.- +..+|
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~--~p~~G 167 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA--LKFNA 167 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT--HHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc--cccCC
Confidence 3679999999999999999999973 44444
No 333
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=84.76 E-value=0.47 Score=44.54 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
.-|+++|..+|||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999863
No 334
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=84.48 E-value=0.42 Score=51.21 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
.-.+++|..+||||++||||..
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999853
No 335
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=84.32 E-value=0.62 Score=53.32 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=24.1
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
+++||..+|||||||..|+|.- +-++|.+
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~--~p~~G~i 56 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEI--IPNFGDP 56 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS--CCCTTCT
T ss_pred EEEECCCCCcHHHHHHHHhcCC--CCCCCcc
Confidence 7899999999999999999973 4445644
No 336
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=84.19 E-value=0.37 Score=50.89 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+++|.++||||||+..|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999995
No 337
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=83.79 E-value=0.67 Score=53.87 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=24.5
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
+++||..+|||||||..|+|. ++-.+|.+
T Consensus 106 ~~LvGpNGaGKSTLLkiL~Gl--l~P~~G~i 134 (608)
T 3j16_B 106 LGLVGTNGIGKSTALKILAGK--QKPNLGRF 134 (608)
T ss_dssp EEEECCTTSSHHHHHHHHHTS--SCCCTTTT
T ss_pred EEEECCCCChHHHHHHHHhcC--CCCCCceE
Confidence 799999999999999999996 35555654
No 338
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=83.76 E-value=0.49 Score=46.85 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~ 55 (775)
..|+++|..+||||||...|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999863
No 339
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=83.75 E-value=0.59 Score=54.33 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=23.2
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
++++|..+|||||||..|+|.- +-++|.
T Consensus 120 ~~LiG~NGsGKSTLlkiL~Gll--~p~~G~ 147 (607)
T 3bk7_A 120 VGIVGPNGTGKTTAVKILAGQL--IPNLCE 147 (607)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS--CCCTTT
T ss_pred EEEECCCCChHHHHHHHHhCCC--CCCCCc
Confidence 7899999999999999999973 434444
No 340
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.60 E-value=0.37 Score=53.44 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=20.2
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
|+|+|..+|||||+|.+|+|.
T Consensus 170 i~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 170 ILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEECSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 899999999999999999995
No 341
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=83.59 E-value=0.73 Score=44.03 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 12 PIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 12 ~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.+++.++..+..+.+.. -.-++++|..|+|||+|+.+|.|.
T Consensus 21 ~~~~~~~~~~~~~~~~~---g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEE---GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHSCCGGG---CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccC---CCEEEEECCCCCCHHHHHHHHHHH
Confidence 34455554444443321 234899999999999999999985
No 342
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=83.56 E-value=0.56 Score=45.94 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=24.2
Q ss_pred cCCCCCCCCCe-EEEEcCCCCchHHHHHHhhCC
Q psy3395 24 LGVPMQMDLPQ-IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 24 ~G~~~~i~lP~-IvVvG~qSsGKSSvLeal~G~ 55 (775)
.|+-..+.-+. |+++|..+||||||.+.|.+.
T Consensus 12 ~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 12 SGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp --CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34434455554 679999999999999999985
No 343
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=83.55 E-value=1.3 Score=45.71 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
++++|..++|||+|+.+|.|.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999985
No 344
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=83.46 E-value=0.63 Score=43.40 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCchHHHHHHh
Q psy3395 33 PQIAVVGGQSAGKSSVLENF 52 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal 52 (775)
+-|+++|..+|||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999999
No 345
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=83.41 E-value=0.44 Score=46.48 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
.|+++|..+||||||.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999997
No 346
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=83.39 E-value=0.59 Score=45.66 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
.|+++|..+|||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999988
No 347
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=83.11 E-value=2.7 Score=50.34 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDF 57 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~f 57 (775)
-++++|..+||||++|..|.|+.+
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 489999999999999999998743
No 348
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=82.72 E-value=1.8 Score=52.67 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
-++++|..+|||||+|..|.++.
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHHH
Confidence 38999999999999999987543
No 349
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=82.68 E-value=0.5 Score=51.31 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
++-.-.+++|..+|||||+||+|.+.
T Consensus 24 ~~~g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 24 FPEGVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred EcCCeEEEECCCCCChhHHHHHHHHh
Confidence 33345799999999999999999874
No 350
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=82.59 E-value=0.5 Score=51.50 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=20.1
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
|+|+|..+|||||+|.+|.|.
T Consensus 139 i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 889999999999999999995
No 351
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.43 E-value=0.51 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.-.+++|..+||||+||+||...
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHHT
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999854
No 352
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.38 E-value=0.42 Score=50.79 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
+|-++|+|..+|||||+|+.|.|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 6889999999999999999999863
No 353
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=82.21 E-value=0.56 Score=45.73 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
..|+++|..+||||||.+.|.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999864
No 354
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=82.19 E-value=0.58 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCchHHHHHHhh
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~ 53 (775)
-.-.|++|..+||||++||||.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3457999999999999999986
No 355
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=82.19 E-value=0.46 Score=44.63 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.-.-++++|..++|||+|+.+|.|.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4456999999999999999999985
No 356
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=81.95 E-value=0.54 Score=50.41 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
..+.|+++|..++||||++++|+|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4577999999999999999999875
No 357
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=81.88 E-value=0.58 Score=46.85 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=18.8
Q ss_pred EEEEcCCCCchHHHHHHhhC
Q psy3395 35 IAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G 54 (775)
++++|..+||||+|+..|++
T Consensus 33 ~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999994
No 358
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=81.76 E-value=1 Score=45.51 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
++++|..++|||+++.+|.|.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999985
No 359
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=81.70 E-value=1.1 Score=46.52 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=26.2
Q ss_pred HHHHhcCCCCCCCCCe-EEEEcCCCCchHHHHHHhhCC
Q psy3395 19 DAFTQLGVPMQMDLPQ-IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 19 d~l~~~G~~~~i~lP~-IvVvG~qSsGKSSvLeal~G~ 55 (775)
+.|+.+|.. +|. ++++|..|+|||+|+.+|.|.
T Consensus 34 ~~l~~~~l~----~~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 34 DQFKALGLV----TPAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHHTTCC----CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHcCCC----CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 356666643 333 999999999999999999985
No 360
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=81.59 E-value=0.8 Score=53.20 Aligned_cols=27 Identities=19% Similarity=0.479 Sum_probs=23.0
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSG 63 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g 63 (775)
++++|..+|||||||++|+|.. +-.+|
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~--~p~~G 407 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL--KPDEG 407 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS--CCSBC
T ss_pred EEEECCCCCcHHHHHHHHhcCC--CCCCC
Confidence 6899999999999999999974 44455
No 361
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=81.42 E-value=0.83 Score=44.09 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.5
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
.|+++|..||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999976
No 362
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=81.37 E-value=0.59 Score=51.73 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
-.+++|..+||||++|+||.|..
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhh
Confidence 47999999999999999999864
No 363
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=81.13 E-value=0.62 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|.++|.+||||||++..|.|.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999885
No 364
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=81.03 E-value=0.61 Score=44.50 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCchHHHHHHhh
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~ 53 (775)
.+-|+++|..+|||||+...|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4569999999999999999997
No 365
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=80.77 E-value=0.26 Score=54.00 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 30 MDLPQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 30 i~lP~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
+.--.+++||..+|||||||++|.|.-
T Consensus 58 ~~~G~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 58 LGGGFCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp CCSSEEEEEESHHHHHHHHTHHHHHHT
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 333468999999999999999998863
No 366
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=80.54 E-value=0.66 Score=44.34 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchHHHHHHhh
Q psy3395 34 QIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~ 53 (775)
.|+++|..+|||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999997
No 367
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=80.13 E-value=0.9 Score=42.87 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-|+++|..+|||||+...|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 489999999999999999975
No 368
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=79.99 E-value=0.9 Score=43.31 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-|+++|..+|||||+.+.|.-
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999864
No 369
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=79.71 E-value=0.28 Score=49.79 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=21.9
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSG 63 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g 63 (775)
++|+|..+|||||+|.+|.|.- +-.+|
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~--~~~~G 56 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL--IPDLT 56 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH--SCCTT
T ss_pred EEEECCCCCCHHHHHHHHhccc--ccCCC
Confidence 4688999999999999999964 33444
No 370
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=79.61 E-value=0.61 Score=56.96 Aligned_cols=31 Identities=39% Similarity=0.517 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~T 66 (775)
.++++|..||||||||+.|+|.. +-.+|.++
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll--~P~sG~I~ 731 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL--LPTSGEVY 731 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS--CCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCceEEE
Confidence 37899999999999999999973 44556543
No 371
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=79.55 E-value=0.94 Score=44.16 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
.|+++|..+|||||+..+|.+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999974
No 372
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=79.35 E-value=0.98 Score=42.74 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.6
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+++|-.+|||||+..+|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999753
No 373
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=79.33 E-value=0.96 Score=43.89 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
|.|++.|..+||||||.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 374
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=79.19 E-value=0.92 Score=43.25 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-|+|+|..||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 375
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=79.11 E-value=15 Score=42.50 Aligned_cols=56 Identities=20% Similarity=0.081 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhHhhcCC------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3395 693 IINNAKDFINGELLAHLYASGDQAAMMEES------PEEALKREEMLRMYHACKEALRIIGDV 749 (775)
Q Consensus 693 lVn~~k~~lq~eLv~~LY~~~~~~~LL~E~------~~ia~rR~~~~~~l~aLk~A~~ii~ev 749 (775)
+++.+=..|+..||.+ ++..+..+||++= ...-++...+.+.-+.|++-++.|.+-
T Consensus 538 ~~D~vP~~I~~~lv~~-~~~~lq~~l~~~l~~~~~~~~ll~E~~~~~~~R~~l~~~~~~L~~A 599 (608)
T 3szr_A 538 ISSHIPLIIQFFMLQT-YGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRKFLKERLARLTQA 599 (608)
T ss_dssp HHHHHHHHHHHHTTHH-HHHHHHHHHHTTTTCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhcchhHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554 3333444444432 334445566666667777777666654
No 376
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=79.11 E-value=0.84 Score=43.54 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+++|..+|||||+...|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999874
No 377
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=78.75 E-value=1 Score=45.63 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-++++|..|+|||+++.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3999999999999999999874
No 378
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=78.51 E-value=1.1 Score=43.48 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+++|..+|||||+.+.|...
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4999999999999999999854
No 379
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=78.14 E-value=2.8 Score=43.72 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCe-EEEEcCCCCchHHHHHHhhC
Q psy3395 8 EQLIPIVNKLQDAFTQLGVPMQMDLPQ-IAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 8 ~~li~~~~~l~d~l~~~G~~~~i~lP~-IvVvG~qSsGKSSvLeal~G 54 (775)
+.+..+++++.+.+ ++......-|. |+++|..||||||+...|..
T Consensus 10 ~~~~~~~~~~~~~~--l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 10 KQFENRLNDNLEEL--IQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHHHH--HTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45555666665543 23222233344 78999999999999999974
No 380
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=77.74 E-value=1.1 Score=42.91 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-|+++|..+|||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999863
No 381
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=77.73 E-value=1.3 Score=42.59 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
+.|+++|..+|||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999864
No 382
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=77.59 E-value=1.2 Score=42.79 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=18.6
Q ss_pred EEEEcCCCCchHHHHHHhhC
Q psy3395 35 IAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G 54 (775)
|++.|..+|||||+.+.|..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999974
No 383
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=77.51 E-value=1.2 Score=43.27 Aligned_cols=21 Identities=33% Similarity=0.260 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-|+++|..+|||||+.+.|..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 384
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=77.37 E-value=1.4 Score=42.10 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCchHHHHHHhh
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~ 53 (775)
.+.|+++|..+|||||+-..|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999985
No 385
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=77.37 E-value=1.2 Score=42.16 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
+.|+++|..+|||||+.+.|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4599999999999999999964
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=77.25 E-value=0.6 Score=45.65 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+|+|..+|||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3899999999999999999863
No 387
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=76.56 E-value=1.1 Score=56.84 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=24.3
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~ 64 (775)
.+++||..|||||||+..|.|. .+..+|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~--~~~~~G~ 474 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY--YDVLKGK 474 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS--SCCSEEE
T ss_pred EEEEEecCCCcHHHHHHHhccc--cccccCc
Confidence 3799999999999999999995 4655554
No 388
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=76.56 E-value=1.1 Score=56.59 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=24.3
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g~~ 65 (775)
+++||..|||||||+..|.|. ++..+|.+
T Consensus 419 ~~ivG~sGsGKSTl~~ll~g~--~~~~~G~i 447 (1284)
T 3g5u_A 419 VALVGNSGCGKSTTVQLMQRL--YDPLDGMV 447 (1284)
T ss_dssp EEEECCSSSSHHHHHHHTTTS--SCCSEEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC--CCCCCeEE
Confidence 699999999999999999996 45556643
No 389
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=76.49 E-value=2.7 Score=40.38 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.|.+++.|..|+|||++++++...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 445999999999999999999753
No 390
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=76.49 E-value=1.1 Score=44.04 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.5
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
++++|..+||||+++..|+|.
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 788999999999999999975
No 391
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=75.98 E-value=1.4 Score=42.24 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+++|..+|||||+...|.+.
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 392
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=75.64 E-value=1.4 Score=41.98 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCchHHHHHHhh---CCCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFV---GRDF 57 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~---G~~f 57 (775)
|.|+++|..+||||++-..|. |.+|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~ 30 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGL 30 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 569999999999999988874 5544
No 393
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=75.63 E-value=1.3 Score=43.09 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-|+++|..+|||||+.+.|..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999974
No 394
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=75.63 E-value=2.6 Score=39.41 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~ 55 (775)
+-++++|..|+|||+++.++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999998764
No 395
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=75.35 E-value=1.6 Score=42.87 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchHHHHHHhh
Q psy3395 34 QIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~ 53 (775)
.|+++|..+|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999984
No 396
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=75.11 E-value=1.6 Score=41.90 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCchHHHHHHhh
Q psy3395 33 PQIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~ 53 (775)
+-|+++|..+|||||+.+.|.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999986
No 397
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=74.94 E-value=1.5 Score=41.74 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-|+++|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999863
No 398
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=74.73 E-value=1.5 Score=42.77 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-|+++|..+|||||+.+.|..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999964
No 399
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=74.65 E-value=1.6 Score=40.89 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCchHHHHHHhh
Q psy3395 33 PQIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~ 53 (775)
+.|+++|..+|||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999885
No 400
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=74.58 E-value=1.5 Score=43.12 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-|+++|..+|||||+.+.|.+
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 401
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=74.27 E-value=1.7 Score=42.60 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchHHHHHHhh
Q psy3395 34 QIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~ 53 (775)
.|+++|..+|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999985
No 402
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=73.89 E-value=4.3 Score=41.95 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=27.4
Q ss_pred HHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 20 AFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 20 ~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.....|+...-...-++++|..|+|||++..+|...
T Consensus 55 ~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 55 ARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344567765444556999999999999999988753
No 403
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=73.88 E-value=1.7 Score=40.56 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
.|+++|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998853
No 404
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=73.75 E-value=1.3 Score=56.11 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=22.8
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccccCc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSG 63 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr~~g 63 (775)
|++||..|||||||+.+|.|. .+-.+|
T Consensus 1108 vaIVG~SGsGKSTL~~lL~rl--~~p~~G 1134 (1321)
T 4f4c_A 1108 LALVGPSGCGKSTVVALLERF--YDTLGG 1134 (1321)
T ss_dssp EEEECSTTSSTTSHHHHHTTS--SCCSSS
T ss_pred EEEECCCCChHHHHHHHHhcC--ccCCCC
Confidence 799999999999999999995 444445
No 405
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=73.75 E-value=1.3 Score=46.06 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=20.0
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
++++|..|+|||+++..|+|.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999996
No 406
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=73.59 E-value=1.8 Score=40.54 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCchHHHHHHhh---CCCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFV---GRDF 57 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~---G~~f 57 (775)
.--|+++|..+|||||+-+.|. |.+|
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~ 35 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEV 35 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4459999999999999999884 5544
No 407
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=73.47 E-value=0.54 Score=42.64 Aligned_cols=95 Identities=14% Similarity=0.215 Sum_probs=54.1
Q ss_pred cccccccccccccccCCCCCCccccccccccccccchHHHHh---------hccCCcCCCccccccCCCCcccccccccc
Q psy3395 528 VIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREK---------KYMLPLDGLKLRDVEQGFMSRRHTFALFN 598 (775)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (775)
+...|||... +.....++..||||....+.+|++...... ++.+++.++.+.....+..+..+.|.+..
T Consensus 12 ~~k~G~L~K~--g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~~~~~k~~~F~I~~ 89 (124)
T 2w2x_D 12 HKQQGELYMW--DSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGKNQKSFVFILEP 89 (124)
T ss_dssp -CCEEEEEEE--ETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTTCBTTBSEEEEEEE
T ss_pred cceeEEEEEE--CCCCCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEEEccCCcCCCCEEEEEEC
Confidence 4567787654 233456889999999889999987654322 33444444443322222222334555544
Q ss_pred CCCCcccchhhhhhccccccCCcchhhhhhh
Q psy3395 599 PEGRNVYKDYKQLELSCENQDDVDSWKASFL 629 (775)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (775)
+... ...+.+++++.++...|...+.
T Consensus 90 ~~~~-----~~~~~~~A~s~ee~~~Wi~ai~ 115 (124)
T 2w2x_D 90 KQQG-----DPPVEFATDKVEELFEWFQSIR 115 (124)
T ss_dssp CC-------CCCEEEEECCCHHHHHHHHHHH
T ss_pred CCCC-----CceEEEEECCHHHHHHHHHHHH
Confidence 3320 1123467788888889987654
No 408
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=73.33 E-value=4.5 Score=37.17 Aligned_cols=21 Identities=10% Similarity=0.126 Sum_probs=19.5
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
|.+.|..|+|||++..+|...
T Consensus 27 vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999764
No 409
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=73.29 E-value=1.8 Score=41.25 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=18.2
Q ss_pred eEEEEcCCCCchHHHHHHhh
Q psy3395 34 QIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~ 53 (775)
-|+++|..+|||||+-+.|.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999998885
No 410
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=72.92 E-value=1.5 Score=44.94 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
..|+++|..+|||||+...|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999965
No 411
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=72.33 E-value=2.5 Score=45.10 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.|-++++|..|+|||+++.++.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999875
No 412
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=72.33 E-value=1.8 Score=41.11 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchHHHHHHhh
Q psy3395 34 QIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~ 53 (775)
-|+++|..+|||||+.+.|.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999886
No 413
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=72.32 E-value=4.2 Score=42.93 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCCCCccccCc-ccccccE
Q psy3395 7 LEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPL 70 (775)
Q Consensus 7 m~~li~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~~flPr~~g-~~TR~p~ 70 (775)
+..|..-+-+||..+...|... -||+=|--+||||+.++.|+.. +-|||-. ..|+.|.
T Consensus 66 l~~lq~~L~~lQ~~~~~~~~~v-----lIvfEG~DgAGKgt~Ik~L~e~-Ldprg~~V~~~~~Pt 124 (304)
T 3czq_A 66 LTKLQIELVKVQFWMQATGKRV-----MAVFEGRDAAGKGGAIHATTAN-MNPRSARVVALTKPT 124 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCE-----EEEEEESTTSSHHHHHHHHHTT-SCTTTEEEEECCSCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCe-----EEEEeCCCCCCHHHHHHHHHHH-hcccCCeEEEeCCcC
Confidence 5677777888888888876421 2677799999999999999986 5698865 3456664
No 414
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=72.27 E-value=1.8 Score=41.70 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~ 55 (775)
..|+++|..+|||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35899999999999999999853
No 415
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=72.09 E-value=2 Score=41.16 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
+.|+++|..+|||||+...|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999864
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=72.01 E-value=1.7 Score=42.80 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+++|..+|||||+...|.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 417
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=71.70 E-value=3.9 Score=45.98 Aligned_cols=46 Identities=28% Similarity=0.491 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHH--HHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 7 LEQLIPIVNKLQ--DAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 7 m~~li~~~~~l~--d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
++.|..++..+. +.+..+|.. ++-+ |+++|..++|||+++.+|.|.
T Consensus 25 ~~~l~e~v~~l~~~~~~~~~g~~--~p~g-vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 25 IEELKEVVEFLKDPSKFNRIGAR--MPKG-ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp HHHHHHHHHHHHCTHHHHTTTCC--CCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhChHHHhhcCCC--CCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 555666555543 234455532 3323 999999999999999999873
No 418
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=71.66 E-value=1.5 Score=41.56 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=14.7
Q ss_pred eEEEEcCCCCchHHHHHHhh
Q psy3395 34 QIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~ 53 (775)
-|+++|..+|||||+.+.|.
T Consensus 7 ~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp EEEEECCC----CHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 419
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.41 E-value=1.7 Score=46.13 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.+|.++++|..|+||||++.+|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999999999983
No 420
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=71.29 E-value=1.8 Score=45.93 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
++.++++|..|+|||||+.+|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999999985
No 421
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=71.12 E-value=2.1 Score=41.40 Aligned_cols=21 Identities=43% Similarity=0.637 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCchHHHHHHhh
Q psy3395 33 PQIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~ 53 (775)
.-|+++|..+|||||+.+.|.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999886
No 422
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=71.05 E-value=1.6 Score=44.37 Aligned_cols=20 Identities=40% Similarity=0.479 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchHHHHHHhh
Q psy3395 34 QIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~ 53 (775)
.|+++|..+|||||+.+.|.
T Consensus 11 ~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999998
No 423
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=71.04 E-value=1.7 Score=47.41 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|+++|..++||||++.+|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999983
No 424
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=70.56 E-value=2 Score=42.59 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
..|+++|..+|||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999973
No 425
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=70.49 E-value=2.2 Score=41.30 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
.|+++|..+|||||+.+.|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998863
No 426
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=70.21 E-value=2.1 Score=54.22 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=23.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSG 63 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g 63 (775)
.+++||..|||||||+..|.|.- +-.+|
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~--~p~~G 1088 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFY--DPMAG 1088 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSS--CCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCC
Confidence 37899999999999999999963 44444
No 427
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=70.09 E-value=1.8 Score=46.58 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
.+.++|..+||||+||..|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
No 428
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=69.94 E-value=4.2 Score=43.90 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
..|.|+++|..++||||+..+|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999998874
No 429
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=69.88 E-value=1.8 Score=48.14 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchHHHHHHhhCCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
.++++|..+||||+||..|+|..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 37899999999999999999963
No 430
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=69.87 E-value=2.3 Score=41.73 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
.|+++|..+|||||+.+.|.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 431
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=69.83 E-value=2.2 Score=42.16 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCchHHHHHHhh
Q psy3395 33 PQIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~ 53 (775)
..|+|+|..+|||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999986
No 432
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=69.67 E-value=4.7 Score=40.84 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=21.5
Q ss_pred CCCCe-EEEEcCCCCchHHHHHHhhCC
Q psy3395 30 MDLPQ-IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 30 i~lP~-IvVvG~qSsGKSSvLeal~G~ 55 (775)
..-|. |+++|..||||||+...|.+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44454 789999999999999999764
No 433
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=69.36 E-value=2.3 Score=43.40 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
+-|+++|-.||||||+...|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 434
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=69.03 E-value=2.1 Score=42.51 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.6
Q ss_pred EEEEcCCCCchHHHHHHhhCCCCccc
Q psy3395 35 IAVVGGQSAGKSSVLENFVGRDFLPR 60 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~~flPr 60 (775)
++++|..+||||+++..|+|.-.+|.
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~~~~~ 52 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTCQLPI 52 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred EEEECCCCCcHHHHHHHHHHHHhCch
Confidence 78999999999999999998433343
No 435
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=68.82 E-value=1.5 Score=43.93 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=25.0
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCccccCccccccc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 69 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flPr~~g~~TR~p 69 (775)
-|++.|..+|||||+.+.|... |.. .+.+||.|
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~--l~~-~~~~~~ep 39 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKK--LQP-NCKLLKFP 39 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH--HCS-SEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHH--hcc-cceEEEec
Confidence 4899999999999999999864 333 34556655
No 436
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=68.78 E-value=6.2 Score=38.14 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-+++.|..++|||+++.++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 437
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=68.72 E-value=2.1 Score=41.66 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=19.5
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-++++|..++|||+++..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999998
No 438
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=67.80 E-value=4.3 Score=41.08 Aligned_cols=46 Identities=24% Similarity=0.486 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHH--HHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhC
Q psy3395 6 GLEQLIPIVNKLQ--DAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 6 ~m~~li~~~~~l~--d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G 54 (775)
.++.|..++..+. +.+..+|.. ..-+ +++.|..|+|||++.++|.+
T Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~--~~~~-vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 19 AKEEVVEIVDFLKYPERYANLGAK--IPKG-VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp THHHHHHHHHHHHCHHHHHHHSCC--CCSC-CCCBCSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChHHHHHCCCC--CCce-EEEECCCCCcHHHHHHHHHH
Confidence 3566666555432 345555643 2222 88999999999999999985
No 439
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=67.77 E-value=2.7 Score=41.74 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
.|+++|..+|||||+.+.|.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999863
No 440
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=67.76 E-value=2.3 Score=42.61 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCchHHHHHHhhC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G 54 (775)
-..|+++|..+|||||+.+.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999985
No 441
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=67.67 E-value=2.7 Score=42.19 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|++.|..+|||||+++.|...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999875
No 442
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=67.35 E-value=4 Score=38.09 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-+-++++|..|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999998753
No 443
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.18 E-value=2.5 Score=44.81 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.+|.++++|..|+|||+++.+|.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999999999985
No 444
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=66.91 E-value=2.9 Score=41.17 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
..|+++|..+|||||+...|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 445
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=66.80 E-value=7.1 Score=39.68 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhC
Q psy3395 5 PGLEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 5 ~~m~~li~~~~~l~d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G 54 (775)
+.|+.++.....+.+.+...+. -..+-++++|..|+|||++..+|..
T Consensus 40 ~~~~~i~~~~~~l~~~l~~~~~---~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 40 DPVTRVLDDGELLVQQTKNSDR---TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSS---CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCC---CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3567777654555555554443 2345689999999999999999975
No 446
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=66.70 E-value=1.5 Score=43.78 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|++.|..+|||||+++.|...
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998753
No 447
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=66.53 E-value=5.9 Score=41.22 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~ 55 (775)
+-++|.|..++|||||+..+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 67999999999999999998753
No 448
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=65.92 E-value=2.8 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCchHHHHHHhhC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G 54 (775)
-|++.|+|..+||||++|++|..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999875
No 449
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=65.59 E-value=2.6 Score=51.56 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=18.9
Q ss_pred EEEEcCCCCchHHHHHHhhC
Q psy3395 35 IAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G 54 (775)
++++|..||||||||..|.|
T Consensus 464 v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 464 YGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999999995
No 450
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=65.33 E-value=3.2 Score=42.28 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-|+|+|..+||||||-..|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999875
No 451
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=65.02 E-value=1.8 Score=49.56 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
|+++|..+||||||+.+|.|.
T Consensus 372 I~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 372 VFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEESSCHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHh
Confidence 789999999999999999996
No 452
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=64.97 E-value=0.8 Score=42.07 Aligned_cols=96 Identities=19% Similarity=0.317 Sum_probs=59.8
Q ss_pred cccccccccccccccCCCCCCcccccccccccccc----chHHHHhhccCCcCCCcccc--ccCCCCccccccccccCCC
Q psy3395 528 VIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFK----DEEEREKKYMLPLDGLKLRD--VEQGFMSRRHTFALFNPEG 601 (775)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 601 (775)
....|||........ -.++..||||....+-+|+ ++.+.+-..+++++++.+.- ......+.++.|.+..++.
T Consensus 8 ~~~~G~L~KqG~~~~-K~WKrRwFVL~~~~LyYfk~~~~~~~~~~p~G~I~L~g~tV~~~~~~~~~~~~k~~F~~v~~~~ 86 (126)
T 1wi1_A 8 MKHSGYLWAIGKNVW-KRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGD 86 (126)
T ss_dssp EEEEEEEEEECSSSC-CSCEEEEEEEEEEETTEEEEEECCSSSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEECSSC
T ss_pred CceeEEEEEeCCCcc-cccceEEEEEeCCEEEEEEcccccccCCCCceEEECCCcEEEEecCCcccccCceEEEEecCCc
Confidence 456677755422222 3678899999988888887 66555556677777776541 1112223345565554431
Q ss_pred CcccchhhhhhccccccCCcchhhhhhhhcc
Q psy3395 602 RNVYKDYKQLELSCENQDDVDSWKASFLRAG 632 (775)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (775)
..-+.++++++.+.|...+.++-
T Consensus 87 --------ty~~~Adseee~~~WikAi~~A~ 109 (126)
T 1wi1_A 87 --------TVIFASDDEQDRILWVQAMYRAT 109 (126)
T ss_dssp --------EEEEECSSHHHHHHHHHHHHHHH
T ss_pred --------eEEEEcCCHHHHHHHHHHHHHHh
Confidence 13377888889999988776655
No 453
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=64.81 E-value=12 Score=46.01 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-++++|..+|||||+|..| |.
T Consensus 791 i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 791 CVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp EEEEECCTTSSHHHHHHHH-HH
T ss_pred EEEEECCCCCChHHHHHHH-HH
Confidence 4889999999999999999 75
No 454
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=64.53 E-value=2.6 Score=43.30 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=18.9
Q ss_pred EEEEcCCCCchHHHHHHhhC
Q psy3395 35 IAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G 54 (775)
++++|..|||||+|+..|+|
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 455
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=64.45 E-value=3.7 Score=40.22 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.7
Q ss_pred EEEEcCCCCchHHHHHHhhC
Q psy3395 35 IAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G 54 (775)
||+=|--+|||||.++.|..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~ 22 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77889999999999998864
No 456
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=63.99 E-value=3.5 Score=41.68 Aligned_cols=21 Identities=48% Similarity=0.651 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
.|+|.|..+||||||-+.|..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888854
No 457
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=63.90 E-value=7.5 Score=38.86 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
+-|++.|..|+|||++..+|..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999975
No 458
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=63.83 E-value=1.4 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.-.|++|..+||||+||+||.+.
T Consensus 61 g~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 61 GFCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 459
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=63.82 E-value=3.6 Score=40.19 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G 54 (775)
-..|.++|..+||||+|-+.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999998863
No 460
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=63.76 E-value=3.8 Score=41.35 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCchHHHHHHhh
Q psy3395 33 PQIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~ 53 (775)
..|+++|..+|||||+.+.|.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999986
No 461
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=63.72 E-value=7.2 Score=39.72 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=25.5
Q ss_pred HHHHhcCCCCCCCCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 19 DAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 19 d~l~~~G~~~~i~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
+.+..+|.. ...-+++.|..|+|||++..+|.+.
T Consensus 41 ~~~~~~~~~---~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 41 ELFEKVGIE---PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp HHHHHHCCC---CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHhcCCC---CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 345556643 2334999999999999999999764
No 462
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=63.50 E-value=0.68 Score=41.36 Aligned_cols=50 Identities=26% Similarity=0.591 Sum_probs=32.5
Q ss_pred ccccccccccccccCCCCCCccccccccccccccchHHHHhhccCCcCCCcc
Q psy3395 529 IRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKL 580 (775)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (775)
...|||... +....+++..||+|....+.+|+++.....+..++++++.+
T Consensus 6 ~~~G~L~K~--g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v 55 (127)
T 1fgy_A 6 DREGWLLKL--GGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSI 55 (127)
T ss_dssp SEEEEEEEE--CSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEE
T ss_pred ceEeEEEEE--CCCCCCeEEEEEEEECCEEEEeCCCCCCCcceEEECCceEE
Confidence 456676544 22345688999999999999998754433444556655543
No 463
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=63.35 E-value=4.3 Score=45.92 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
+.++|..++|||+|+.+|.|.
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999985
No 464
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=63.28 E-value=3.5 Score=40.63 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCchHHHHHHhh
Q psy3395 33 PQIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~ 53 (775)
..|+++|..+|||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999985
No 465
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=63.19 E-value=11 Score=36.29 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.-+++.|..|+|||+++.+|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999864
No 466
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=63.15 E-value=3.8 Score=40.89 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
..|+++|..+|||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 467
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=63.00 E-value=4.3 Score=39.76 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-+-++++|..|+|||+++.+|...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
No 468
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=62.96 E-value=3.5 Score=42.76 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchHHHHHHhh
Q psy3395 34 QIAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~ 53 (775)
-|+|+|..+|||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999997
No 469
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=62.30 E-value=3.9 Score=42.30 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-|+++|..+|||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 470
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=61.91 E-value=3 Score=48.91 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=17.4
Q ss_pred EEEEcCCCCchHHHHHHhh
Q psy3395 35 IAVVGGQSAGKSSVLENFV 53 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~ 53 (775)
++++|..+|||||||++|+
T Consensus 351 vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 351 VAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEECSTTSSHHHHHTTTH
T ss_pred EEEEeeCCCCHHHHHHHHH
Confidence 6899999999999998775
No 471
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=61.90 E-value=4.4 Score=42.32 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
|-++|.|..++|||||+..+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999875
No 472
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=61.87 E-value=6.6 Score=40.85 Aligned_cols=32 Identities=16% Similarity=0.374 Sum_probs=24.7
Q ss_pred HHHhcCCCCCCCCCe-EEEEcCCCCchHHHHHHhhCC
Q psy3395 20 AFTQLGVPMQMDLPQ-IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 20 ~l~~~G~~~~i~lP~-IvVvG~qSsGKSSvLeal~G~ 55 (775)
.+..+|+ ..|. |.+.|..|+|||++..+|.+.
T Consensus 40 ~~~~~~~----~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 40 KFLKFGM----TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp HHHHHCC----CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHcCC----CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 4455564 2343 899999999999999999874
No 473
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=61.83 E-value=7.1 Score=35.71 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=19.4
Q ss_pred EEEEcCCCCchHHHHHHhhCC
Q psy3395 35 IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G~ 55 (775)
|.+.|..|+|||++..+|...
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 899999999999999999764
No 474
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=60.89 E-value=5.2 Score=42.50 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=27.0
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCC---C-------ccccCccccccc
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRD---F-------LPRGSGIVTRRP 69 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~---f-------lPr~~g~~TR~p 69 (775)
|-|||+|..+||||+|...|.-.- + +.++-.+.|+.|
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp 50 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKI 50 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCC
Confidence 568999999999999999987431 0 134555677766
No 475
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=60.34 E-value=3.6 Score=41.85 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
..-|+|.|.-||||||+.+.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999998753
No 476
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=60.08 E-value=1.3 Score=40.57 Aligned_cols=52 Identities=13% Similarity=0.295 Sum_probs=37.1
Q ss_pred cccccccccccccccccCCCCCCccccccccccccccchHHHHhhccCCcCCCcc
Q psy3395 526 NQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKL 580 (775)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (775)
..+...|||...+ ...+++..||||....+.+|+++.+..-...++++++.+
T Consensus 6 ~~v~k~GwL~K~g---~~k~WkrRWfVLk~~~L~yyk~~~~~~p~G~I~L~~~~v 57 (130)
T 1v88_A 6 SGIVMADWLKIRG---TLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEI 57 (130)
T ss_dssp SSCCEEEEEEECC---SSSSCEEEEEEEETTEEEEESCSSSCCCCEEEECSSCEE
T ss_pred CceEEEeEEEEeC---CCCCceEEEEEEECCEEEEECCCCCCCceEEEEcCCCEE
Confidence 3466778886643 334689999999999999998876544455667766654
No 477
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=59.79 E-value=5.9 Score=45.20 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 29 QMDLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 29 ~i~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.+.-+-++++|..++|||+++.+|.+.
T Consensus 105 ~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 105 SLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp SCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 357778999999999999999999875
No 478
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=58.99 E-value=77 Score=33.47 Aligned_cols=53 Identities=26% Similarity=0.280 Sum_probs=31.4
Q ss_pred ccChHHHHHHHHHHHh-hhcCCCC-----cccccCeEEEEecCCC-------cceEEEeCCCCCcc
Q psy3395 92 FVDFDEVRREIEAETD-RITGSNK-----GISNVPINLRVYSPNV-------LNITLIDLPGLTKV 144 (775)
Q Consensus 92 ~~d~~~v~~~i~~~~~-~~~g~~~-----~~s~~~i~l~i~~p~~-------~~LtlvDlPG~~~~ 144 (775)
..+.+++.+.+..... +..+..+ .-|.-.+.|.|...+. --|+||||.|--+.
T Consensus 173 v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVDLAGSEr~ 238 (325)
T 1bg2_A 173 VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKV 238 (325)
T ss_dssp ECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSCCC
T ss_pred CCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEECCCCCcc
Confidence 3577888887776543 2223211 2345566666654322 25999999998654
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=58.60 E-value=4.7 Score=40.35 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=19.5
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-|++.|.-+|||||+.+.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3899999999999999999753
No 480
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=58.13 E-value=4.8 Score=46.17 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCchHHHHHHhhC
Q psy3395 32 LPQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 32 lP~IvVvG~qSsGKSSvLeal~G 54 (775)
.|++.|+|..+||||++|++|+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHH
Confidence 59999999999999999999764
No 481
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=58.01 E-value=4.2 Score=44.03 Aligned_cols=26 Identities=19% Similarity=0.228 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGRD 56 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~~ 56 (775)
.-|.++|+|..+||||+++..|++.-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999753
No 482
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.62 E-value=4.6 Score=37.49 Aligned_cols=83 Identities=20% Similarity=0.430 Sum_probs=50.2
Q ss_pred CCCCccccccccccccccchHHH--HhhccCCcCCCccccccCCCCccccccccccCCCCcccchhhhhhccccccCCcc
Q psy3395 545 GSRDYWFVLTSENISWFKDEEER--EKKYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVD 622 (775)
Q Consensus 545 ~~~~~~~vl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (775)
+++.+||++....+.+||..++. +..+.+.+.||.+.+..+. -+.++.|.+..+.... .....+.|++.++..
T Consensus 27 ~~KrrWFvlk~~~L~YyK~kee~~~ePig~I~L~gceV~pd~~~-~~~kf~ikl~iPs~~g----~r~y~l~cdsEeqy~ 101 (137)
T 2ys3_A 27 GYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNV-SGQKFCIKLLVPSPEG----MSEIYLRCQDEQQYA 101 (137)
T ss_dssp SSCCCEEEECSSCEEEESSTTTTTSCCSCCBCTTTCEEEECCBG-GGTBEEEEEEEECSSS----EEEEEEEESSHHHHH
T ss_pred cceeEEEEEeCCEEEEECCchhccCCCceEEECCCCEEeccccc-cCCceEEEEEccCCCC----ceEEEEECCCHHHHH
Confidence 46789999998899999776653 3445567777765432110 0112223334432101 123457888888999
Q ss_pred hhhhhhhhcc
Q psy3395 623 SWKASFLRAG 632 (775)
Q Consensus 623 ~~~~~~~~~~ 632 (775)
.|++.+..+.
T Consensus 102 ~WMaA~rlAs 111 (137)
T 2ys3_A 102 RWMAGCRLAS 111 (137)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999876555
No 483
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=57.59 E-value=1.1 Score=39.29 Aligned_cols=100 Identities=16% Similarity=0.340 Sum_probs=54.5
Q ss_pred cccccccccccccccCCCCCCccccccccccccccchHHHHhhccCCcCCCcccccc-CCCCccccccccccCCCCcccc
Q psy3395 528 VIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVE-QGFMSRRHTFALFNPEGRNVYK 606 (775)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 606 (775)
+...|||... +.....++..||+|....+.+|+++........+++.++.+.... ....+..+.|.+..+....+..
T Consensus 8 ~~~~G~L~K~--g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~~~~~ 85 (118)
T 1v89_A 8 PIKMGWLKKQ--RSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRM 85 (118)
T ss_dssp EEEEEEEEEE--CSSSSCEEEEEEEEETTEEEEESSSSCCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCS
T ss_pred CcEEEEEEec--CCCCCCccEEEEEEECCEEEEEeCCCCCCceEEEECCCCEEEEcCcCcccCCcceEEEECCccccccC
Confidence 4566777654 223456889999999999999987644333445555554432111 0111223455555432111001
Q ss_pred hhhhhhccccccCCcchhhhhhh
Q psy3395 607 DYKQLELSCENQDDVDSWKASFL 629 (775)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~ 629 (775)
......+.+++.++.+.|...+-
T Consensus 86 ~~~~~~l~a~s~~e~~~Wi~al~ 108 (118)
T 1v89_A 86 GQDSYVLMASSQAEMEEWVKFLR 108 (118)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCHHHHHHHHHHHH
Confidence 11234467777778888977653
No 484
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=57.11 E-value=10 Score=37.78 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCC---eEEEEcCCCCchHHHHHHhhC
Q psy3395 10 LIPIVNKLQDAFTQLGVPMQMDLP---QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 10 li~~~~~l~d~l~~~G~~~~i~lP---~IvVvG~qSsGKSSvLeal~G 54 (775)
.+..+..|+..++ | +| .|++.|..|+|||++.-+|..
T Consensus 41 ~~~f~~~l~~~~~--~------iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 41 FITFLGALKSFLK--G------TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHHH--T------CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--c------CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4556667766554 2 67 799999999999988877765
No 485
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=56.50 E-value=3.7 Score=42.88 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=16.6
Q ss_pred CeEEEEcCCCCchHHHHHHhhC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G 54 (775)
+-|+|.|..+||||||-+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 486
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=55.43 E-value=5.7 Score=43.62 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-|+++|-.+|||||+...|..
T Consensus 260 lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999999864
No 487
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=55.14 E-value=6.1 Score=41.86 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=26.3
Q ss_pred CeEEEEcCCCCchHHHHHHhhCCC---C-------ccccCccccccc
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGRD---F-------LPRGSGIVTRRP 69 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~~---f-------lPr~~g~~TR~p 69 (775)
+-|||+|..+||||+|...|...- + +.++-.+.|+.|
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp 57 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKP 57 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCC
Confidence 457889999999999999986421 1 234445677766
No 488
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=55.12 E-value=6.3 Score=38.47 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
.|+++|..+||||++...|..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998865
No 489
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=55.01 E-value=6.4 Score=39.09 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchHHHHHHhhC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G 54 (775)
-||+.|..+|||||+++.|..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 389999999999999999864
No 490
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=54.94 E-value=14 Score=38.11 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHhhCC
Q psy3395 31 DLPQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 31 ~lP~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.+|.+++.|..|+|||++..++...
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4567999999999999999999864
No 491
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=54.85 E-value=4.8 Score=47.98 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.2
Q ss_pred eEEEEcCCCCchHHHHHHhhCCCCcc
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGRDFLP 59 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~~flP 59 (775)
-++++|..+|||||+|..|.|...+|
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~~~~ 603 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIALLA 603 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhhhhc
Confidence 47899999999999999999975333
No 492
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.66 E-value=10 Score=41.93 Aligned_cols=33 Identities=24% Similarity=0.590 Sum_probs=27.1
Q ss_pred HHHHhcCCCCCCCCCe-EEEEcCCCCchHHHHHHhhCC
Q psy3395 19 DAFTQLGVPMQMDLPQ-IAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 19 d~l~~~G~~~~i~lP~-IvVvG~qSsGKSSvLeal~G~ 55 (775)
+.+..+|+ ..|+ |.+.|..|+|||++..||.+.
T Consensus 196 ~~~~~~g~----~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 196 DLYEQIGI----DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp HHHHHHCC----CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHHHhCCC----CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45667774 4666 999999999999999999863
No 493
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=54.21 E-value=11 Score=39.06 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=21.2
Q ss_pred CCCCCeEE-EEcCCCCchHHHHHHhhC
Q psy3395 29 QMDLPQIA-VVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 29 ~i~lP~Iv-VvG~qSsGKSSvLeal~G 54 (775)
.+..|..+ +.|..|+|||++.++|..
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 46677655 559999999999999974
No 494
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=54.15 E-value=9.9 Score=40.70 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchHHHHHHhhCC
Q psy3395 33 PQIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 33 P~IvVvG~qSsGKSSvLeal~G~ 55 (775)
+-|||+|..+||||+|--.|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998864
No 495
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=53.78 E-value=12 Score=38.43 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
-+.++|..|+|||++..+|.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 4899999999999999999985
No 496
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=53.67 E-value=6.3 Score=43.95 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchHHHHHHhhCC
Q psy3395 34 QIAVVGGQSAGKSSVLENFVGR 55 (775)
Q Consensus 34 ~IvVvG~qSsGKSSvLeal~G~ 55 (775)
.|++||-.+|||||+...|...
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 497
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=53.63 E-value=6.6 Score=38.15 Aligned_cols=20 Identities=45% Similarity=0.728 Sum_probs=18.4
Q ss_pred EEEEcCCCCchHHHHHHhhC
Q psy3395 35 IAVVGGQSAGKSSVLENFVG 54 (775)
Q Consensus 35 IvVvG~qSsGKSSvLeal~G 54 (775)
|.|+|..+||||++-|.|.-
T Consensus 2 ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 78999999999999999874
No 498
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=53.30 E-value=1.9 Score=37.72 Aligned_cols=92 Identities=23% Similarity=0.443 Sum_probs=50.8
Q ss_pred cccccccccccccccCCCCCCccccccccccccccchHHHHhhccCCcCCCccccccCCCCccccccccccCCCCcccch
Q psy3395 528 VIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKD 607 (775)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (775)
+...|||... +.....++..||+|....+.+|+++.....+..+++.++..........+..+.|.+..++.
T Consensus 5 ~~~~G~L~K~--g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~------ 76 (113)
T 1pls_A 5 RIREGYLVKK--GSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQ------ 76 (113)
T ss_dssp CSEEEEEEEE--SSSSSCCEEEEEEEETTEEEEESSTTCSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTT------
T ss_pred CcEEEEEEEe--CCCCCCceEEEEEEECCEEEEEeCCCCCCcceEEEcCCCEEEEecCCCCCCccEEEEEcCCC------
Confidence 4556777544 23345688999999999999988754333334445544432110000011223455443332
Q ss_pred hhhhhccccccCCcchhhhhh
Q psy3395 608 YKQLELSCENQDDVDSWKASF 628 (775)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~ 628 (775)
....+.+++.++.+.|...+
T Consensus 77 -r~~~l~a~s~~e~~~Wi~ai 96 (113)
T 1pls_A 77 -QDHFFQAAFLEERDAWVRDI 96 (113)
T ss_dssp -EEEEEECSSHHHHHHHHHHH
T ss_pred -CEEEEECCCHHHHHHHHHHH
Confidence 12346677777888897765
No 499
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=53.19 E-value=5.6 Score=46.50 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=14.4
Q ss_pred EEEEcCCCCchHHHH
Q psy3395 35 IAVVGGQSAGKSSVL 49 (775)
Q Consensus 35 IvVvG~qSsGKSSvL 49 (775)
+++||..+|||||||
T Consensus 47 ~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 47 VVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHh
Confidence 899999999999997
No 500
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=53.07 E-value=1.9 Score=40.65 Aligned_cols=91 Identities=18% Similarity=0.318 Sum_probs=54.7
Q ss_pred cccccccccccccccCCCCCCccccccccccccccchHHHHhhccCCcCCCccc-cccCCCCccccccccccCCCCcccc
Q psy3395 528 VIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLR-DVEQGFMSRRHTFALFNPEGRNVYK 606 (775)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (775)
++..|||.... .....++..||+|....+-+|+++.+......+++.++... +.... -...+.|.+..++.
T Consensus 18 v~keG~L~Kkg--~~~k~WkrRWFvLk~~~L~Yyk~~~d~~~~g~I~L~~~~~~~~~~~~-~~~~~~F~I~t~~r----- 89 (149)
T 1x1f_A 18 LYFEGFLLIKR--SGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNST-EKNCAKFTLVLPKE----- 89 (149)
T ss_dssp EEEEEEEEEEC--TTCCSCEEEEEEEETTEEEEESCSSCSSCSEECCCSSCCEEEECCCT-TSCCCEEEEECSSC-----
T ss_pred ccEEEEEEEeC--CCCCCceeEEEEEcCCEEEEEeCCCccccCcEEECCCceEEeeccCC-CCcCcEEEEEcCCC-----
Confidence 67789987653 23357899999999999999998654444455666554322 10000 00123455443321
Q ss_pred hhhhhhccccccCCcchhhhhhh
Q psy3395 607 DYKQLELSCENQDDVDSWKASFL 629 (775)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~ 629 (775)
...+.+++.++.+.|...+.
T Consensus 90 ---~~~f~A~s~ee~~eWi~aI~ 109 (149)
T 1x1f_A 90 ---EVQLKTENTESGEEWRGFIL 109 (149)
T ss_dssp ---CEEEECSSHHHHHHHHHHHH
T ss_pred ---EEEEEcCCHHHHHHHHHHHH
Confidence 12367788888889987653
Done!