RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3395
(775 letters)
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial
fission, GT stalk, PH, BSE, membrane fission; HET: 1PE;
3.10A {Rattus norvegicus} PDB: 3snh_A
Length = 772
Score = 722 bits (1863), Expect = 0.0
Identities = 508/763 (66%), Positives = 618/763 (80%), Gaps = 21/763 (2%)
Query: 3 GNPGLEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS 62
GN G+E LIP+VN+LQDAF+ +G +DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS
Sbjct: 22 GNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS 81
Query: 63 GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPIN 122
GIVTRRPLVLQL+NS TEYAEFLHCKGKKF DF+EVR EIEAETDR+TG+NKGIS VPIN
Sbjct: 82 GIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPIN 141
Query: 123 LRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDL 182
LRVYSP+VLN+TL+DLPG+TKVPVGDQP DIE QI+DML QF+TKE CLILAV+PAN+DL
Sbjct: 142 LRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL 201
Query: 183 ATSDALQIAKQVDPD----VLNLTLVDLPGMTKVPIGDQPADI-EYQIKSMILQFIKRDN 237
A SDAL+IAK+VDP + +T +DL + G D+ E ++ + +I N
Sbjct: 202 ANSDALKIAKEVDPQGQRTIGVITKLDL-----MDEGTDARDVLENKLLPLRRGYIGVVN 256
Query: 238 CLILAVTPANSDLANSDALKLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRD 297
+ + D LA E HPSYRHLADR+GTPYLQ+VLNQQLTNHIRD
Sbjct: 257 R-----SQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRD 311
Query: 298 TLPGLRDRLQKQLLTLEKDVEQFKHFRPDDPSIKTKAMLQMIQQLQSDFERTIEGSGSAQ 357
TLPGLR++LQ QLL++EK+V+++K+FRPDDP+ KTKA+LQM+QQ DFE+ IEGSG Q
Sbjct: 312 TLPGLRNKLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGD-Q 370
Query: 358 INTMELSGGAKINRLFHERFPFEIVKMEFDEKELRREIAFAIRNIHGIRVGLFTPDMAFE 417
I+T ELSGGA+INR+FHERFPFE+VKMEFDEKELRREI++AI+NIH IR GLFTPD+AFE
Sbjct: 371 IDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDLAFE 430
Query: 418 AIVKKQISRLKEPALKCVDLVVAELSNVVRICTDKMSRYPRLREETERIITSYVRNREQQ 477
A VKKQ+ +LKEP++KCVD+VV+EL++ +R C++K+ +YPRLREE ERI+T+++R RE +
Sbjct: 431 ATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCSEKLQQYPRLREEMERIVTTHIREREGR 490
Query: 478 CKEQIVLLVDCELAYMNTNHEDFIGFANVMFSAQQTTDNSNKAGRKLGNQVIRKGWMCIH 537
KEQ++LL+D ELAYMNTNHEDFIGFAN + Q + +G + VIRKGW+ I+
Sbjct: 491 TKEQVMLLIDIELAYMNTNHEDFIGFANAQQRSNQ-MNKKKTSGNQDEILVIRKGWLTIN 549
Query: 538 NLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMSRRHTFALF 597
N+GIMKGGS++YWFVLT+EN+SW+KD+EE+EKKYML +D LKLRDVE+GFMS +H FALF
Sbjct: 550 NIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALF 609
Query: 598 NPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYPEKSTDQSNGDEGGTEGT----S 653
N E RNVYKDY+QLEL+CE Q++VDSWKASFLRAGVYPE+ D+ E G+
Sbjct: 610 NTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGDKEKASETEENGSDSFMH 669
Query: 654 SMDPQLERQVETIRNLVDSYMKIVTKTCRDLVPKTIMLLIINNAKDFINGELLAHLYASG 713
SMDPQLERQVETIRNLVDSYM IV KT RDL+PKTIM L+INN K+FI ELLA+LY+ G
Sbjct: 670 SMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCG 729
Query: 714 DQAAMMEESPEEALKREEMLRMYHACKEALRIIGDVSMATVST 756
DQ +MEES E+A +R+EMLRMYHA KEAL IIGD++ TVST
Sbjct: 730 DQNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTTTVST 772
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding; 3.50A
{Homo sapiens} PDB: 3zys_B
Length = 608
Score = 436 bits (1123), Expect = e-144
Identities = 141/578 (24%), Positives = 252/578 (43%), Gaps = 27/578 (4%)
Query: 8 EQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 67
E++ P ++ L D+ LGV + LP IAV+G QS+GKSSVLE G PRGSGIVTR
Sbjct: 22 EKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVAL-PRGSGIVTR 79
Query: 68 RPLVLQLINSMTE---YAEFLHCK-GKKFVDFDEVRREIEAETDRITGSNKGISNVPINL 123
PLVL+L + E + + + D EV +EI + I G GIS+ I L
Sbjct: 80 CPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITL 139
Query: 124 RVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLA 183
+ S +V ++TLIDLPG+T+V VG+QP DI +IK ++ ++I ++ + L V P+N D+A
Sbjct: 140 EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199
Query: 184 TSDALQIAKQVDPD----VLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCL 239
T++AL +A++VDP+ + LT DL + K + + + ++
Sbjct: 200 TTEALSMAQEVDPEGDRTIGILTKPDL--VDKGTEDKVVDVVRNLVFHLKKGYMIVKCR- 256
Query: 240 ILAVTPANSDLANSDALKLAKEVDPPGLHPSYRHLAD--RLGTPYLQRVLNQQLTNHIRD 297
S + L +E HP +R L + + P L L +L HI
Sbjct: 257 ----GQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICK 312
Query: 298 TLPGLRDRLQKQLLTLEKDVEQFKHFRPDDPSIKTKAMLQMIQQLQSDFERTIEGSGSAQ 357
+LP L +++++ + ++++++ P+D + K ++ + D ++G +
Sbjct: 313 SLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEET-- 370
Query: 358 INTMELSGGAKINRLFHERFPFEIVKMEFDEKELRREIAFAIRNIHGIRVGLFTPDMAFE 417
+ ++ ++ FH+ + K L R+I + F FE
Sbjct: 371 VGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGFVNYRTFE 430
Query: 418 AIVKKQISRLKEPALKCVDLVVAELSNVVRICTDK-MSRYPRLREETERIITSYVRNREQ 476
IVK+QI L+EPA+ + V + + K + L + I +E+
Sbjct: 431 TIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQER 490
Query: 477 QCKEQIVLLVDCELAYMNTNHEDFIGFANVMFSAQQTTDNSNKAGRKLGNQVIRKGWMCI 536
+ ++ I L E +++ Q +A +++ + + +
Sbjct: 491 EGEKLIRLHFQMEQIVYGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFM 550
Query: 537 HNLGIMKGGSRDYWFVLTSENISWFKDE-----EEREK 569
+ + + SW E ++R+
Sbjct: 551 LQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRKF 588
Score = 58.9 bits (142), Expect = 4e-09
Identities = 15/103 (14%), Positives = 36/103 (34%)
Query: 646 EGGTEGTSSMDPQLERQVETIRNLVDSYMKIVTKTCRDLVPKTIMLLIINNAKDFINGEL 705
E G + +E I + +Y + +K +P I ++ + +
Sbjct: 503 EQIVYGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAM 562
Query: 706 LAHLYASGDQAAMMEESPEEALKREEMLRMYHACKEALRIIGD 748
L L + +++E + + KR+ + +A R +
Sbjct: 563 LQLLQDKDTYSWLLKERSDTSDKRKFLKERLARLTQARRRLAQ 605
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
protein 1A, GTPase, membrane fission, motor Pro; HET:
GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Length = 360
Score = 346 bits (889), Expect = e-113
Identities = 151/369 (40%), Positives = 218/369 (59%), Gaps = 33/369 (8%)
Query: 7 LEQLIPIVNKLQDAFTQLGVP--------MQMDLPQIAVVGGQSAGKSSVLENFVGRDFL 58
+E LI +VNK+Q A T LG + LP IAVVGGQS+GKSSVLE+ VG+DFL
Sbjct: 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFL 60
Query: 59 PRGSGIVTRRPLVLQLINSMT---EYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKG 115
PRGSGIVTRRPLVLQL EYAEFLH KKF DF VR+EI+ ETDR TG +K
Sbjct: 61 PRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKA 120
Query: 116 ISNVPINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAV 175
IS+VPI+L +YSPNV+N+TLIDLPGLTKV V Q I + I++M+ +I K C+ILA+
Sbjct: 121 ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180
Query: 176 TPANTDLATSDALQIAKQVDPD----VLNLTLVDLPGMTKVPIGDQPADI-EYQIKSMIL 230
+PAN DLATSDA++I+++VDP LT +DL + G +I E + +
Sbjct: 181 SPANQDLATSDAIKISREVDPSGDRTFGVLTKIDL-----MDKGTDAVEILEGRSFKLKY 235
Query: 231 QFIKRDNCLILAVTPANSDLANSDALK--LAKEVDPPGLHPSYRHLADRLGTPYLQRVLN 288
+ + V + +D+ + + +E + YRHLA+++G+ +L ++L+
Sbjct: 236 PW-------VGVVNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLS 288
Query: 289 QQLTNHIRDTLPGLRDRLQKQLLTLEKDVEQFKHFRPDDPSIKTKAMLQMIQQLQSDFER 348
+ L I+ +PG++ + K +L LE ++ + + + I + +S +
Sbjct: 289 KHLERVIKSRIPGIQSLINKTVLELETELSRLGKPIAHGTDSR---VDPAIMERRSAISK 345
Query: 349 TIEGSGSAQ 357
+E +AQ
Sbjct: 346 RLELYRAAQ 354
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission,
nucleotide-binding, endocytosis, motor protein; HET:
GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Length = 353
Score = 343 bits (881), Expect = e-112
Identities = 218/359 (60%), Positives = 267/359 (74%), Gaps = 23/359 (6%)
Query: 6 GLEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 65
+E LIP+VN+LQDAF+ +G +DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV
Sbjct: 5 SMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 64
Query: 66 TRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRV 125
TRRPLVLQL+N+ TEYAEFLHCKGKKF DF+EVR EIEAETDR+TG+NKGIS VPINLRV
Sbjct: 65 TRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRV 124
Query: 126 YSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATS 185
YSP+VLN+TL+DLPG+TKVPVGDQP DIE QI+DML QF+TKE CLILAV+PAN+DLA S
Sbjct: 125 YSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS 184
Query: 186 DALQIAKQVDPD----VLNLTLVDLPGMTKVPIGDQPADI-EYQIKSMILQFIKRDNCLI 240
DAL++AK+VDP + +T +DL + G D+ E ++ + + I
Sbjct: 185 DALKVAKEVDPQGQRTIGVITKLDL-----MDEGTDARDVLENKLLPLRRGY-------I 232
Query: 241 LAVTPANSDLANSDALK--LAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDT 298
V + D+ + LA E HPSYRHLADR+GTPYLQ+VLNQQLTNHIRDT
Sbjct: 233 GVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDT 292
Query: 299 LPGLRDRLQKQLLTLEKDVEQFKHFRPDDPSIKTKA--MLQMIQQLQ--SDFERTIEGS 353
LPGLR++LQ QLL++EK+VE++K+FRPD ++ ML+M L+ I +
Sbjct: 293 LPGLRNKLQSQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALKEALSIIGNINTT 351
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle
protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
3l43_A*
Length = 299
Score = 324 bits (832), Expect = e-105
Identities = 205/311 (65%), Positives = 241/311 (77%), Gaps = 19/311 (6%)
Query: 7 LEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66
+E LIP+VN+LQDAF+ +G +DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT
Sbjct: 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
Query: 67 RRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVY 126
RRPLVLQL+NS TEYAEFLHCKGKKF DF+EVR EIEAETDR+TG+NKGIS VPINLRVY
Sbjct: 61 RRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVY 120
Query: 127 SPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD 186
SP+VLN+TL+DLPG+TKVPVGDQP DIE QI+DML QF+TKE CLILAV+PAN+DLA SD
Sbjct: 121 SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 180
Query: 187 ALQIAKQVDPD----VLNLTLVDLPGMTKVPIGDQPADI-EYQIKSMILQFIKRDNCLIL 241
AL+IAK+VDP + +T +DL + G D+ E ++ + + I
Sbjct: 181 ALKIAKEVDPQGQRTIGVITKLDL-----MDEGTDARDVLENKLLPLRRGY-------IG 228
Query: 242 AVTPANSDLANSDALK--LAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTL 299
V + D+ + LA E HPSYRHLADR+GTPYLQ+VLNQQLTNHIRDTL
Sbjct: 229 VVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTL 288
Query: 300 PGLRDRLQKQL 310
PGLR++LQ QL
Sbjct: 289 PGLRNKLQSQL 299
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin,
fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A
{Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Length = 315
Score = 314 bits (805), Expect = e-101
Identities = 159/328 (48%), Positives = 215/328 (65%), Gaps = 28/328 (8%)
Query: 8 EQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 67
+QLIP++NKLQD F LG +DLPQI VVG QS+GKSSVLEN VGRDFLPRGSGIVTR
Sbjct: 1 DQLIPVINKLQDVFNTLGSD-PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTR 59
Query: 68 RPLVLQLINS--------MTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNV 119
RPL+LQL + E+ EFLH F DF E+R EI +TDR+TG NKGIS
Sbjct: 60 RPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQ 119
Query: 120 PINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPAN 179
PINL++YSP+V+N+TL+DLPG+TKVPVGDQP DIEQQI+ M+ +I K+ +I+AVTPAN
Sbjct: 120 PINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179
Query: 180 TDLATSDALQIAKQVDPD----VLNLTLVDLPGMTKVPIGDQPADI-EYQIKSMILQFIK 234
TDLA SDALQ+AK+VDP+ + +T +DL + G ++ ++ + L F
Sbjct: 180 TDLANSDALQLAKEVDPEGKRTIGVITKLDL-----MDKGTDAMEVLTGRVIPLTLGF-- 232
Query: 235 RDNCLILAVTPANSDLANSDALK--LAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLT 292
I + + D+ +++ L E+ HP Y+ +A+R GT YL + LN+ L
Sbjct: 233 -----IGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLM 287
Query: 293 NHIRDTLPGLRDRLQKQLLTLEKDVEQF 320
HIRDTLP L+ ++ K L ++ ++ +
Sbjct: 288 FHIRDTLPDLKVKVSKMLSDVQGELSTY 315
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 197 bits (503), Expect = 5e-60
Identities = 86/123 (69%), Positives = 107/123 (86%)
Query: 519 KAGRKLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGL 578
+G + VIRKGW+ I+N+GIMKGGS++YWFVLT+EN+SW+KD+EE+EKKYML +D L
Sbjct: 3 TSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNL 62
Query: 579 KLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYPEKS 638
KLRDVE+GFMS +H FALFN E RNVYKDY+QLEL+CE Q++VDSWKASFLRAGVYPE+
Sbjct: 63 KLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERV 122
Query: 639 TDQ 641
D+
Sbjct: 123 GDK 125
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle,
antiviral protein; 2.40A {Homo sapiens}
Length = 271
Score = 139 bits (351), Expect = 4e-37
Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 4/178 (2%)
Query: 326 DDPSIKTKAMLQMIQQLQSDFERTIEGSGSAQINTMELSGGAKINRLFHERFPFEIVKME 385
+D + K ++ + D ++G + ++ ++ FH+ +
Sbjct: 1 EDENEKMFFLIDKVNAFNQDITALMQGEETVGEE--DIRLFTRLRHEFHKWSTIIENNFQ 58
Query: 386 FDEKELRREIAFAIRNIHGIRVGLFTPDMAFEAIVKKQISRLKEPALKCVDLVVAELSNV 445
K L R+I G + F FE IVK+QI L+EPA+ + V +
Sbjct: 59 EGHKILSRKIQKFENQYRGRELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLA 118
Query: 446 VRICTDK-MSRYPRLREETERIITSYVRNREQQCKEQIVLLVDCELAYMNTNHEDFIG 502
+ K + L + I +E++ ++ I L E + + + G
Sbjct: 119 FTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQME-QIVYCQDQVYRG 175
Score = 39.2 bits (91), Expect = 0.003
Identities = 12/89 (13%), Positives = 31/89 (34%)
Query: 636 EKSTDQSNGDEGGTEGTSSMDPQLERQVETIRNLVDSYMKIVTKTCRDLVPKTIMLLIIN 695
EK ++ + G + +E I + +Y + +K +P I ++
Sbjct: 182 EKELEEEKKKKSWDFGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQ 241
Query: 696 NAKDFINGELLAHLYASGDQAAMMEESPE 724
+ +L L + +++E +
Sbjct: 242 TYGQQLQKAMLQLLQDKDTYSWLLKERSD 270
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 81.1 bits (199), Expect = 9e-16
Identities = 94/669 (14%), Positives = 183/669 (27%), Gaps = 216/669 (32%)
Query: 144 VPVGDQPI--DIE-QQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPDVLN 200
+ V + + + + ++DM ++KE D I D
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEI---------------D--HIIMSKDAVSGT 64
Query: 201 LTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLILAVTPANSDLANSDAL--KL 258
L L + + + M+ +F++ N L +
Sbjct: 65 LRLFWT--------------LLSKQEEMVQKFVE------------EVLRINYKFLMSPI 98
Query: 259 AKE-VDPPGLHPSYRHLADRL---GTPYLQR-VLNQQLTNHIRDTLPGLRDR----LQ-- 307
E P + Y DRL + + V Q +R L LR +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 308 ----KQLLTLE----KDVEQFKHF--------RPDDPSIKTKAMLQMIQQL--QSDFERT 349
K + L+ V+ F + P + +L+M+Q+L Q D T
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP----ETVLEMLQKLLYQIDPNWT 214
Query: 350 IEGSGSAQINTMELSGGAKINRLFHERFPF-------------EIVKMEFDE--KEL--- 391
S+ I S A++ RL + P+ + F+ K L
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLNVQNAKAWNA-FNLSCKILLTT 272
Query: 392 R-REIAFAIRNIHGIRVGL------FTPDMA---FEAIVKKQISRLKEPALKCVDLVVA- 440
R +++ + + L TPD + + L L ++
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 441 ---------------------ELSNVVRICTDKMS------RYPRL---REETERIITSY 470
+L+ ++ + + + RL I +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTI 390
Query: 471 V-----RNREQQCKEQIV-LLVDCELAYMNTNHEDFIGFANVMFSAQQTTDNSNKAGRKL 524
+ + + +V L L E I ++ + +N R +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 525 GNQV-IRKGWMCIHNLGIMKGGSRDYWFVLTSENISWF-----KDEEEREKKYMLPLDGL 578
+ I K + +L Y++ K+ E E+ + + L
Sbjct: 450 VDHYNIPKTF-DSDDLIPPY--LDQYFY--------SHIGHHLKNIEHPERMTLFRMVFL 498
Query: 579 KLRDVEQGFMSR--RHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYPE 636
R F+ + RH +N G ++ +QL+ Y
Sbjct: 499 DFR-----FLEQKIRHDSTAWNASG-SILNTLQQLKF--------------------YKP 532
Query: 637 KSTDQSNGDEGGTEGTSSMDPQLERQVETIRNLVDSY-MKIVTKTCRDLVPKTIMLLIIN 695
D DP+ ER V I + + ++ DL+ + +
Sbjct: 533 YICDN--------------DPKYERLVNAILDFLPKIEENLICSKYTDLLR-----IALM 573
Query: 696 NAKDFINGE 704
+ I E
Sbjct: 574 AEDEAIFEE 582
Score = 68.0 bits (165), Expect = 9e-12
Identities = 97/659 (14%), Positives = 202/659 (30%), Gaps = 191/659 (28%)
Query: 49 LENFVGRDF-------LPRGSGIVTRRPL--VLQLINSMTE-YAEF--LHCKG----KKF 92
+ FV +F +P+ I+++ + ++ ++++ F L K +KF
Sbjct: 26 EDAFV-DNFDCKDVQDMPKS--ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 93 VDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVPVG-DQPI 151
V+ + +R + I + S + R+Y + D K V QP
Sbjct: 83 VE-EVLRINYKFLMSPIKTEQRQPS---MMTRMYIEQR-DRLYNDNQVFAKYNVSRLQPY 137
Query: 152 DIEQQIKDMLFQ-----FIT--------KETCLILAVTPANTDLATSDA----LQIAKQV 194
+++ L + + K T + L V + D L +
Sbjct: 138 ---LKLRQALLELRPAKNVLIDGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 195 DPDVLNLTLVDL-----PGMTKVPIGDQPADIEYQI------KSMILQFIKRDNCL-ILA 242
P+ + L L P T D ++I+ +I +L+ +NCL +L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRS--DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL- 250
Query: 243 VTPANSDLANSDALK--------LAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNH 294
++ N+ A L L ++ + D L +
Sbjct: 251 -----LNVQNAKAWNAFNLSCKIL--------LTTRFKQVTDFLSAATTTHIS------- 290
Query: 295 IRDTLPGLRDRLQKQLLTLEKDVEQFKHFRPDD-PSIKTKAM---LQMIQQLQSDFERTI 350
+ L K LL ++ RP D P L +I + D T
Sbjct: 291 LDHHSMTLTPDEVKSLL------LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 351 EGSGSAQINTMELSGGAKINRLFHERFPFEIVKM---EFDEKELRRE-IAFAIRNIHGIR 406
+ +N +L+ I++ + E R+ ++
Sbjct: 345 DNW--KHVNCDKLT---------------TIIESSLNVLEPAEYRKMFDRLSV------- 380
Query: 407 VGLFTPDMAFEAIVKKQISRL-KEPALKCVDLVVAELSNVVRICTDK---------MSRY 456
F P I+ +S + + V +VV +L +K S Y
Sbjct: 381 ---FPPSAHIPTIL---LSLIWFDVIKSDVMVVVNKLHK--YSLVEKQPKESTISIPSIY 432
Query: 457 PRLREETE-------RIITSYVRNREQQCKEQIVLLVD----CELAY-MNT--NHEDFIG 502
L+ + E I+ Y + + I +D + + + + E
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 503 FANVMFSAQQTTDNSNKAGRKLGNQVIRKG--WMCIHNLGIMKGGSRDYWFVLTSENISW 560
F V R L ++ W ++ + Y I
Sbjct: 493 FRMVFLDF-----------RFLEQKIRHDSTAWNASGSILNTLQQLKFY-----KPYIC- 535
Query: 561 FKDEEEREKKYMLPLDGLK--LRDVEQGFMSRRHT----FALFNPEGRNVYKD-YKQLE 612
++ + E+ ++ + L +E+ + ++T AL + ++++ +KQ++
Sbjct: 536 -DNDPKYERL----VNAILDFLPKIEENLICSKYTDLLRIALMAEDE-AIFEEAHKQVQ 588
Score = 67.2 bits (163), Expect = 2e-11
Identities = 75/504 (14%), Positives = 149/504 (29%), Gaps = 142/504 (28%)
Query: 14 VNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDF-----LPRG-----SG 63
KL+ A +L + + G +GK+ + V + +
Sbjct: 137 YLKLRQALLEL-----RPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 64 IVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITG--SNKGISNVPI 121
VL+++ + + ++ I + + +K N +
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDH--SSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 122 NLR-VYSPNVLNI------TLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILA 174
L V + N L+ T+ +Q+ D L T L
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILL----TTR----------FKQVTDFLSAATTTHISLDHH 294
Query: 175 VTPANTDLATSDALQI-AKQVDPDVLNLTLVDLPG-MTKV-P-----IG----DQPADIE 222
L + + K L+ DLP + P I D A +
Sbjct: 295 SMT----LTPDEVKSLLLK-----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 223 Y-------QIKSMILQFIK-------RDNCLILAVTPANSDLANSDALKL----AKEVDP 264
++ ++I + R L+V P ++ + + L L + D
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDV 404
Query: 265 PGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQKQLL---TLEKD-VEQF 320
+ ++L + ++ +Q ++P + L+ +L L + V+ +
Sbjct: 405 -------MVVVNKL---HKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 321 ---KHFRPDDPSIKTKAM---------LQMIQQLQS---------DF---ERTIEGSGSA 356
K F DD L+ I+ + DF E+ I +A
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 357 QINTMELSGGAKINRL----FHERFPFEIVKMEFDEKELRREIA-FAIR---NIHG---- 404
+ G+ +N L F++ + I + + L I F + N+
Sbjct: 514 WNAS-----GSILNTLQQLKFYKPY---ICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 405 --IRVGLFTPDMAFEAIVKKQISR 426
+R+ L D A KQ+ R
Sbjct: 566 DLLRIALMAEDEAIFEEAHKQVQR 589
Score = 59.9 bits (144), Expect = 2e-09
Identities = 64/431 (14%), Positives = 114/431 (26%), Gaps = 128/431 (29%)
Query: 414 MAFEAIVKKQISRLKEPALKCVDLVVAELSNVVRI--CTDKMSRYPRL---REETERIIT 468
M FE E + D++ V C D + P+ +EE + II
Sbjct: 7 MDFE---------TGEHQYQYKDILSVFEDAFVDNFDCKD-VQDMPKSILSKEEIDHIIM 56
Query: 469 SYVRNREQQCKEQIVLLVDCELAYMNTNHEDFIGFA-----NVMFSAQQTTDNSNKAGRK 523
S ++ + L L+ + F+ + S +T +
Sbjct: 57 S--KDAV----SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 524 L----------GNQVIRK----------------------GWMCIHNLGIMKG-G----- 545
+ NQV K + I G + G G
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--G-VLGSGKTWVA 167
Query: 546 ---SRDYWFVLTSEN-ISWFK-DEEEREKKYMLPLDGLKLRDVEQGFMSR-------RHT 593
Y + I W + + L L L ++ + SR +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLR 226
Query: 594 FALFNPEGRN--VYKDYKQ--LELSCENQDDVDSWKASFLRA---GVYPEK----STDQS 642
E R K Y+ L L +V A A K + +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVL-----LNV--QNAKAWNAFNLSC---KILLTTRFKQ 276
Query: 643 NGDEGGTEGTSSMDPQLERQVETIRNLVDSYMKIVTKTCRDLVP---KTIMLLIINNAKD 699
D T+ + T + +K + +DL P T ++
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLS---- 331
Query: 700 FINGELLAH--------LYASGDQAAMMEESPEEALKREEMLRMYHACKEALRIIGDVSM 751
I E + + + D+ + ES L+ E +M+ + L +
Sbjct: 332 -IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF----DRLSVFPP--- 383
Query: 752 ATVSTPVPPPV 762
S +P +
Sbjct: 384 ---SAHIPTIL 391
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 64.4 bits (157), Expect = 1e-12
Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 526 NQVIRKGWMCIHNLGIMKGGS-----RDYWFVLTSENISWFKDEEEREKKYMLPLDGLKL 580
+ I+ GW+ K S + +FVL ++ + ++KDEE+ + + + L G +
Sbjct: 6 SGPIKMGWL-------KKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTI 58
Query: 581 RDVEQGF-MSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
+++ + + F + L +Q +++ W
Sbjct: 59 KEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEW 103
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 63.3 bits (154), Expect = 3e-12
Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 21/123 (17%)
Query: 509 SAQQTTDNSNKAGRKLGNQVIRKGWMCIHNLGIMKGGSRDY------WFVLTSENISWFK 562
S+ + SN R V+R+GW+ K S WFVL+ + +++
Sbjct: 2 SSGSSGKRSNSIKRNPNAPVVRRGWL-------YKQDSTGMKLWKKRWFVLSDLCLFYYR 54
Query: 563 DEEEREKKYMLPLDGLKLRDVEQG-FMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDV 621
DE+E + L ++ + ++R++ F +P R Y + ++
Sbjct: 55 DEKEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYY-------FCTDTGKEM 107
Query: 622 DSW 624
+ W
Sbjct: 108 ELW 110
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 62.5 bits (152), Expect = 5e-12
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 21/123 (17%)
Query: 509 SAQQTTDNSNKAGRKLGNQVIRKGWMCIHNLGIMKGGSRDY------WFVLTSENISWFK 562
S S+ R V + GW+ K S WFVL + ++K
Sbjct: 3 SGSSGGKRSHSMKRNPNAPVTKAGWL-------FKQASSGVKQWNKRWFVLVDRCLFYYK 55
Query: 563 DEEEREKKYMLPLDGLKLRDVEQG-FMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDV 621
DE+E +PL ++ V+ +SR+HTF + R + S E+ ++
Sbjct: 56 DEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYF-------FSAESPEEQ 108
Query: 622 DSW 624
++W
Sbjct: 109 EAW 111
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 61.7 bits (150), Expect = 8e-12
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 520 AGRKLGNQVIRKGWMCIHNLGIMKGGSRDY------WFVLTSENISWFKDEEEREKKYML 573
+G V + GW+ K S WFVL + ++KDE+E +
Sbjct: 3 SGSSGNAPVTKAGWL-------FKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSI 55
Query: 574 PLDGLKLRDVEQG-FMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
PL ++ V+ +SR+HTF + R + S E+ ++ ++W
Sbjct: 56 PLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYF-------FSAESPEEQEAW 100
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 61.7 bits (150), Expect = 1e-11
Identities = 29/136 (21%), Positives = 43/136 (31%), Gaps = 21/136 (15%)
Query: 518 NKAGRKLGNQVIRKGWMCIHNLGIMKGGSRDY------WFVLTSENISWFKDEEEREKKY 571
N R V +GW+ K S WFVL+ + ++KD E
Sbjct: 1 NALRRDPNLPVHIRGWL-------HKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLG 53
Query: 572 MLPLDGLKLRDVEQG-FMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLR 630
+ L +R G RR TF +P R L+ + +D+ W + R
Sbjct: 54 SVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYV-------LAADTLEDLRGWLRALGR 106
Query: 631 AGVYPEKSTDQSNGDE 646
A Q
Sbjct: 107 ASRAEGDDYGQPRSPA 122
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 66.5 bits (161), Expect = 2e-11
Identities = 74/497 (14%), Positives = 154/497 (30%), Gaps = 76/497 (15%)
Query: 5 PGLEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 64
G L + + A L Q + ++ V+G GKS+ L +G + LP
Sbjct: 46 SGKLSLERDIEDITIASKNL----QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNP 101
Query: 65 VTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREI---EAETDRITGSNKGISNVPI 121
T VL+ F K + +DF + + AE ++ K
Sbjct: 102 CTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVD 161
Query: 122 NLRVYSPNVL---NITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPA 178
V P L I ++D PGL + + + IL V A
Sbjct: 162 YAVVEYPLTLLQKGIEIVDSPGL------NDTEARNELSLGYV-----NNCHAILFVMRA 210
Query: 179 NTDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNC 238
+ + + + L + + + +V D ++++ + + N
Sbjct: 211 SQPCTLGERRYLENYIKGRGLTVFFL-VNAWDQVRESLIDPDDVEELQASENRLRQVFNA 269
Query: 239 LILAVTPANSDLANSD---------ALKLAKEVDPPGLHPS---------YRHLADRLGT 280
+ + AL+ + L + L
Sbjct: 270 NLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRERAI 329
Query: 281 PYLQRVLN--QQLTNHIRDTLPGLRDRLQKQLLTLEKDVEQFKHFRPDDPSIKTKAMLQM 338
L++V + NH R+ + L++ + L+K ++ +
Sbjct: 330 AELRQVRTLARLACNHTREAVARRIPLLEQDVNELKKRIDSVEP------------EFNK 377
Query: 339 IQQLQSDFERTIEGSGSAQINTMELSGGAKINRLFHE------RFPFEIVKMEFDEKELR 392
+ ++ +F++ I + Q T+ S + + L + R+ E+ +F R
Sbjct: 378 LTGIRDEFQKEIINTRDTQARTISESFRSYVLNLGNTFENDFLRYQPELNLFDFLSSGKR 437
Query: 393 REIAFAIRNIHGIRVGLFTPDMAFEAIVKKQISRLKEPALKCVDLVVAELSNVVRICTDK 452
A++ AFE + + + A K ++ ELS R +
Sbjct: 438 EAFNAALQK-------------AFEQYITDKSAAWTLTAEKDINAAFKELS---RSASQY 481
Query: 453 MSRYPRLREETERIITS 469
+ Y ++ ++ +T
Sbjct: 482 GASYNQITDQITEKLTG 498
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 57.4 bits (139), Expect = 3e-10
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 527 QVIRKGWMCIHNLGIMKGGS----RDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRD 582
+ IR+G++ + KG + W VL + I ++K + + K M+PL G L
Sbjct: 4 KRIREGYL------VKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTS 57
Query: 583 VEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
Q F R F + + ++ + ++ D+W
Sbjct: 58 PCQDFGKRMFVFKITTTKQQDHF-------FQAAFLEERDAW 92
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 56.1 bits (135), Expect = 2e-09
Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 26/142 (18%)
Query: 526 NQVIRKGWMCIHNLGIMKGGS---------RDYWFVLTSENISWFKDEEEREKKYMLPLD 576
VI+ G++ K + W L+ ++ ++++++K +D
Sbjct: 15 PFVIKAGYL-------EKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAID 67
Query: 577 GLKLRDV--EQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVY 634
G +R + + F + P+ R + + D + W L+ +
Sbjct: 68 GYDVRMNNTLRKDGKKDCCFEICAPDKRIYQ-------FTAASPKDAEEWVQQ-LKFILQ 119
Query: 635 PEKSTDQSNGDEGGTEGTSSMD 656
S DE E +D
Sbjct: 120 DLGSDVIPEDDEERGELYDDVD 141
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 54.7 bits (132), Expect = 2e-09
Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 23/108 (21%)
Query: 527 QVIRKGWMCIHNLGIMKGGSRDY--------WFVLTSENISWFKDEEEREKKYMLPLDGL 578
VI++G++ K + W V++ ++ +E+ ++ K + G
Sbjct: 2 SVIKQGYL------EKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGY 55
Query: 579 KLRDV--EQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
+R + + F L + + R Y E + + + W
Sbjct: 56 SVRMAPHLRRDSKKESCFELTSQDRR-TY------EFTATSPAEARDW 96
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 54.4 bits (131), Expect = 2e-09
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 550 WFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMS-RRHTFALFNPEGRNVYKDY 608
+ VL++ + + D + + + G + + + R H F + + D
Sbjct: 24 FVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANTTDRPHAFQV-------ILSDR 76
Query: 609 KQLELSCENQDDVDSWKASFLRA 631
LELS E++ ++ W +A
Sbjct: 77 PCLELSAESEAEMAEWMQHLCQA 99
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 54.2 bits (130), Expect = 5e-09
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 26/116 (22%)
Query: 527 QVIRKGWMCIHNLGIMKGGS----RDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRD 582
R+GW+ + GG + WF+LT + +F+ ++E + ++PL+ L +R+
Sbjct: 4 NPDREGWL------LKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIRE 57
Query: 583 VEQGFMSRRHTFALFNPE--------------GRNVYKDYKQLELSCENQDDVDSW 624
V + + F L+NP GR V ++ +S + ++ + W
Sbjct: 58 VLDP--RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEW 111
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 53.6 bits (129), Expect = 5e-09
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 20/109 (18%)
Query: 521 GRKLGNQVIRKGWMCIHNLGIMKGGS-----RDYWFVLTSENISWFKDEEEREKKYMLPL 575
G + V+++G+M MK G + WFVL IS++ E+ ++KK + L
Sbjct: 1 GSSGSSGVLKQGYM-------MKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILL 53
Query: 576 DGLKLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
D + ++ F + + K + E+S ++ W
Sbjct: 54 DENCCVESLPDKDGKKCLFLVKCFD-----KTF---EISASDKKKKQEW 94
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 52.9 bits (127), Expect = 1e-08
Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 20/109 (18%)
Query: 522 RKLGNQVIRKGWMCIHNLGIMKGGSR----DYWFVLTSENISWFKDEEEREKKYMLPLDG 577
+ VI+ G+ + +G +F L I +FK E E+E ++PL
Sbjct: 8 PPQDSAVIKAGYC------VKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKE 61
Query: 578 LKL--RDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
+ + M R + F + + + ++ +++ SW
Sbjct: 62 VHKVQECKQSDIMMRDNLFEIVTTS--------RTFYVQADSPEEMHSW 102
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 52.0 bits (125), Expect = 2e-08
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 25/124 (20%)
Query: 510 AQQTTDNSNKAG--RKLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEER 567
+ S +G + +K W + WFV+ ++ + + E+
Sbjct: 1 GSSGSSGSTMSGYLYRSKG--SKKPW-------------KHLWFVIKNKVLYTYAASEDV 45
Query: 568 EKKYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKAS 627
PL G + V+ S F L + ++ W +
Sbjct: 46 AALESQPLLGFTVTLVKDE-NSESKVFQLLHKGMVFYV-------FKADDAHSTQRWIDA 97
Query: 628 FLRA 631
F
Sbjct: 98 FQEG 101
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 55.0 bits (132), Expect = 2e-08
Identities = 14/103 (13%), Positives = 37/103 (35%), Gaps = 16/103 (15%)
Query: 526 NQVIRKGWMC----IHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLR 581
+ +++GW+ + + + WFVL + +F+++ E + K + + K
Sbjct: 56 QEALKQGWLHNNGGGSSTLSRRNWKK-RWFVLRQSKLMYFENDSEEKLKGTVEVRSAKEI 114
Query: 582 DVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
+ + + + + L E+ +D W
Sbjct: 115 IDNTN---KENGIDIIMAD--------RTFHLIAESPEDASQW 146
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 52.4 bits (125), Expect = 2e-08
Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 18/119 (15%)
Query: 524 LGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYML---PLDGL-- 578
+ + V +G++ I G W VL+ IS++ ++ ++K + L
Sbjct: 1 VNSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTS 60
Query: 579 -KLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLE------------LSCENQDDVDSW 624
++ + F +RR+TF L + + LS + +++ D W
Sbjct: 61 RQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLW 119
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 51.6 bits (124), Expect = 3e-08
Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 21/139 (15%)
Query: 512 QTTDNSNKAGRKLGNQVIRKGWMCIHNLGIMKGGS-----RDYWFVLTSENISWFKDEEE 566
QT + + ++G++ K G + WF L + +FKD+
Sbjct: 2 QTGRTEDDLVPTAPSLGTKEGYL-------TKQGGLVKTWKTRWFTLHRNELKYFKDQMS 54
Query: 567 REKKYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKA 626
E +L L + R + F L P R Y L + + D W
Sbjct: 55 PEPIRILDLTECSAVQFDYSQ-ERVNCFCLVFPF-RTFY-------LCAKTGVEADEWIK 105
Query: 627 SFLRAGVYPEKSTDQSNGD 645
K +Q G
Sbjct: 106 ILRWKLSQIRKQLNQGEGT 124
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 49.3 bits (118), Expect = 2e-07
Identities = 13/109 (11%), Positives = 35/109 (32%), Gaps = 23/109 (21%)
Query: 526 NQVIRKGWMCIHNLGIMKGGS----RDYWFVLTSEN--ISWFKDEEEREKKYMLPLDGLK 579
+I++G + + +G + F+L + + ++ + + L G
Sbjct: 5 GVIIKQGCL------LKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCV 58
Query: 580 LRDVEQGFMSRR----HTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
+ VE R+ + F + + + + L + W
Sbjct: 59 VTSVESNSNGRKSEEENLFEIITADEVHYF-------LQAATPKERTEW 100
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 49.6 bits (118), Expect = 2e-07
Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 30/137 (21%)
Query: 528 VIRKGWMCIHNLGIMKGGS-----RDYWFVLTSEN-ISWFKDEEEREKKYM--LPLDGLK 579
++R GW+ + S + WF L + + ++ DE ++++ + +
Sbjct: 8 LVRGGWL-------WRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRD 60
Query: 580 LRDVEQGF-------MSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRA- 631
++ ++ SR + EG ++ L E +DD +WK + + A
Sbjct: 61 IKVGQECQDVQPPEGRSRDGLLTVNLREGSRLH-------LCAETRDDAIAWKTALMEAN 113
Query: 632 GVYPEKSTDQSNGDEGG 648
+G G
Sbjct: 114 STPAPAGATVPSGPSSG 130
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 49.5 bits (118), Expect = 2e-07
Identities = 15/127 (11%), Positives = 40/127 (31%), Gaps = 27/127 (21%)
Query: 512 QTTDNSNKAGRKLGNQVIRKGWMCIHNLGIMKGGS----RDYWFVLTSENISWF---KDE 564
+ + + + +L V+++G++ +G + FVL + +
Sbjct: 2 SSGSSGSLSTVELSGTVVKQGYL------AKQGHKRKNWKVRRFVLRKDPAFLHYYDPSK 55
Query: 565 EEREKKYMLPLDGLKLRDVEQG-------FMSRRHTFALFNPEGRNVYKDYKQLELSCEN 617
EE L G + +E + + F + + + Y + +
Sbjct: 56 EENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYY-------IQASS 108
Query: 618 QDDVDSW 624
+ + W
Sbjct: 109 KAERAEW 115
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 50.9 bits (121), Expect = 3e-07
Identities = 15/104 (14%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 526 NQVIRKGWMC---IHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRD 582
VI+ G++ + + + W L+ ++ ++++++K +DG +R
Sbjct: 104 PFVIKAGYLEKRRKDHSFLGFEWQK-RWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRM 162
Query: 583 V--EQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
+ + F + P+ R +Y + + + D + W
Sbjct: 163 NNTLRKDGKKDCCFEICAPDKR-IY------QFTAASPKDAEEW 199
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 48.2 bits (115), Expect = 4e-07
Identities = 16/128 (12%), Positives = 41/128 (32%), Gaps = 31/128 (24%)
Query: 528 VIRKGWMCIHNLGIMKGGSRD------YWFVLTSENISWFKDEEEREKKYMLPLDGLKLR 581
++ GW+ K + W +IS++ +E+E + L
Sbjct: 8 KVKSGWL-------DKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMY-----SKGIIPLS 55
Query: 582 DVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW-----KASFLRAGVYPE 636
+ + + F + + R E +++ + W A ++
Sbjct: 56 AISTVRVQGDNKFEVVTTQ-RTFV-------FRVEKEEERNDWISILLNALKSQSLTSQS 107
Query: 637 KSTDQSNG 644
+++ S+G
Sbjct: 108 QASGPSSG 115
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 48.2 bits (115), Expect = 5e-07
Identities = 14/121 (11%), Positives = 37/121 (30%), Gaps = 25/121 (20%)
Query: 515 DNSNKAGRKLGNQVIRKGWMCIHNLGIMKGGS-----RDYWFVLTSEN--ISWFKDEEER 567
+ + +I++G + +K G + F+L + + ++
Sbjct: 5 SSGVILKEEFRGVIIKQGCL-------LKQGHRRKNWKVRKFILREDPAYLHYYDPAGAE 57
Query: 568 EKKYMLPLDGLKLRDVEQGFMSRR----HTFALFNPEGRNVYKDYKQLELSCENQDDVDS 623
+ + L G + VE R+ + F + + + + L +
Sbjct: 58 DPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYF-------LQAATPKERTE 110
Query: 624 W 624
W
Sbjct: 111 W 111
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 47.6 bits (113), Expect = 8e-07
Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 20/113 (17%)
Query: 525 GNQVIRKGWM---CIHNLGIMKGGSR---DYWFVLTSENISWFKDEEEREKKYMLPLDG- 577
G +G++ + K +R + + IS++KD++ + L G
Sbjct: 5 GAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGE 64
Query: 578 --LKLR----DVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
L+ ++ + ++H + G L + ++ W
Sbjct: 65 PSYDLQNAAIEIASDYTKKKHVLRVKLANGALFL-------LQAHDDTEMSQW 110
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 47.8 bits (113), Expect = 9e-07
Identities = 15/124 (12%), Positives = 38/124 (30%), Gaps = 29/124 (23%)
Query: 521 GRKLGNQVIRKGWMCIHNLGIMKGGS----RDYWFVLTSENISWFKDEEEREKKYMLPLD 576
G + ++ W+ G+ W VL + +K ++ + + L+
Sbjct: 1 GSSGSSGIVMADWL-------KIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLN 53
Query: 577 GLKLRDVEQGFMSRRHTFALFNPEGRNVYKDY----------------KQLELSCENQDD 620
++ + F LF+P ++++ L + ++ D
Sbjct: 54 ACEIIERPSK--KDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESD 111
Query: 621 VDSW 624
W
Sbjct: 112 GRCW 115
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 47.6 bits (113), Expect = 9e-07
Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 28/123 (22%)
Query: 528 VIRKGWMCIHNLGIMKGGSR-------DYWFVLTSENISWFKDEEEREK----------- 569
+ + G + G R W VL +++FKD +
Sbjct: 8 LDKAGVLHRTK--TADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFST 65
Query: 570 -KYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASF 628
+Y + L G L + SR++ L + +G + +++ + +W +
Sbjct: 66 PEYTVELRGATLSWAPKDKSSRKNVLELRSRDGSEYL-------IQHDSEAIISTWHKAI 118
Query: 629 LRA 631
+
Sbjct: 119 AQG 121
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 48.6 bits (115), Expect = 1e-06
Identities = 23/161 (14%), Positives = 50/161 (31%), Gaps = 29/161 (18%)
Query: 527 QVIRKGWM---CIHNLGIMKGGS-----RDYWFVLTSENISWFKDEEEREKKYMLPLDGL 578
++GW+ + + G + + VL ++ +KD+ E+ +
Sbjct: 2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSE-EEQPI 60
Query: 579 KLR----DVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW--------KA 626
+ D+ R++ F L E++DD+ +W
Sbjct: 61 SVNACLIDISYSETKRKNVFRLTTS-DCECL-------FQAEDRDDMLAWIKTIQESSNL 112
Query: 627 SFLRAGVYPEKSTDQSNGDEGGTEGTSSMDPQLERQVETIR 667
+ GV + + + P+ RQ +IR
Sbjct: 113 NEEDTGVTNRDLISRRIKEYNNLMSKAEQLPKTPRQSLSIR 153
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 1e-06
Identities = 86/617 (13%), Positives = 185/617 (29%), Gaps = 209/617 (33%)
Query: 7 LEQLIPI-------VNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLP 59
LE ++ + ++LQ+ F + LP+ ++ E VG+ FL
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNK-------ILPEPTEGFAADDEPTTPAE-LVGK-FL- 65
Query: 60 RGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFDEV---RREIEAETDRITGSNKG- 115
G V+ LV + + ++ + L+ +F+ +I A ++ N
Sbjct: 66 ---GYVSS--LVEP--SKVGQFDQVLN---LCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 116 ISNVPINLRVY--SPNVLNITLIDLPG---LTKVPVGDQPI--------DIE------QQ 156
+ ++ Y + + V G+ + + + +
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 157 I----KDMLFQFITK--ETCLILAVTPANTDLATSDALQI-------AKQVDPDVLNLTL 203
+ ++ I ET L T + + + L I + D D L
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 204 VDLP--GMT---------KVPIGDQPADIEYQIKSMILQFIKRDNCLILAVTPANSD--- 249
+ P G+ K+ +G P ++ +K L+ AV A +D
Sbjct: 236 ISCPLIGVIQLAHYVVTAKL-LGFTPGELRSYLKGATG----HSQGLVTAVAIAETDSWE 290
Query: 250 --LANSD-ALKL-------AKEVDPP-GLHPSYRHLADRLG----TPYLQRVLNQQLTNH 294
+ A+ + E P L PS + +P L
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML----------- 339
Query: 295 IRDTLPGLRDRLQKQLLTLEKDVEQFKHFRPDDPSIKTKAML----QMI--------QQL 342
+ + Q+Q+ + V + P ++ +++ ++ L
Sbjct: 340 ------SISNLTQEQV---QDYVNKTNSHLPAGKQVEI-SLVNGAKNLVVSGPPQSLYGL 389
Query: 343 QSDFERTIEGSGSAQINTMELSGGAKI---NR--LFHERF-----PF---------EIVK 383
+ SG Q ++I R F RF PF +++
Sbjct: 390 NLTLRKAKAPSGLDQ---------SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 384 -------MEFDEKELRREIA-FAIRNIHGIRV--GLFTPDMAFEAIVKKQI---SRLKEP 430
+ F+ K+++ I + + +RV G + + + I++ + + +
Sbjct: 441 KDLVKNNVSFNAKDIQ--IPVYDTFDGSDLRVLSGSISERIV-DCIIRLPVKWETTTQFK 497
Query: 431 ALKCVDL---VVAELSNVVRICTDKMSRYPRLREET-ERIITSYVRNREQQCKEQIVLLV 486
A +D + L + R ++ T R+I +
Sbjct: 498 ATHILDFGPGGASGLGVLTH----------RNKDGTGVRVIVA----------------- 530
Query: 487 DCELAYMNTNHEDFIGF 503
++ N +D GF
Sbjct: 531 ----GTLDINPDDDYGF 543
Score = 47.4 bits (112), Expect = 2e-05
Identities = 98/535 (18%), Positives = 158/535 (29%), Gaps = 193/535 (36%)
Query: 340 QQLQSDFERTIE------GSGSAQINTMELSGGAK----INRLFHE----RFPFEIVKM- 384
QLQ F + + + EL K ++ L +F +++ +
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELV--GKFLGYVSSLVEPSKVGQFD-QVLNLC 87
Query: 385 --EFDEKELRREIAFAIRNIHGIRVGLFTPDMA------------FEA--IVKKQISRLK 428
EF+ L +IH + L + A + K+ +
Sbjct: 88 LTEFENCYLEGN------DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 429 EPALKCVDLVVAELSNVVRICT------DKMSRYPRLRE--ETER-IITSYVRNREQQCK 479
AL ++ + + LR+ +T ++ ++ +
Sbjct: 142 NSAL----FRAVG-EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 480 EQIVLLVDCELAYMNTNHEDFIGFANVMFSAQQTTDNSNKAGRKLGNQVIRKGWMCIHNL 539
E I +D E + G N++ W + N
Sbjct: 197 ELIRTTLDAEKVFTQ-------GL-NIL------------------------EW--LENP 222
Query: 540 GIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMSRRHTFALFNP 599
+DY L S IS PL G+ Q ++ H
Sbjct: 223 S--NTPDKDY---LLSIPISC-------------PLIGVI-----Q--LA--HYVVTAKL 255
Query: 600 EGRNVYKDYKQLE-LSCENQDDV--------DSWKASFLRA-----------GV-----Y 634
G + L+ + +Q V DSW SF + GV Y
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW-ESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 635 PEKSTDQSNGD---EGGTEGTSSMDPQLERQVETIRNLVDSYM-KIVTKTCRDLVP--KT 688
P S S + E EG S P L +I NL + V KT L P K
Sbjct: 315 PNTSLPPSILEDSLENN-EGVPS--PML-----SISNLTQEQVQDYVNKTNSHL-PAGKQ 365
Query: 689 IMLLIINNAKDF-INGELLAHLYA-----------SG-DQAAMMEESP--EEALK-REEM 732
+ + ++N AK+ ++G + LY SG DQ+ P E LK
Sbjct: 366 VEISLVNGAKNLVVSGPPQS-LYGLNLTLRKAKAPSGLDQS----RIPFSERKLKFSNRF 420
Query: 733 LRM---YHA--CKEAL-RIIGDVSMATVSTPVPP---PVKN--DW-----LATSI 771
L + +H+ A I D+ VS PV + D L+ SI
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Score = 43.5 bits (102), Expect = 3e-04
Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 49/177 (27%)
Query: 575 LDGLKLR--DVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAG 632
+D R + G S H + P + QL + F +
Sbjct: 1 MDAYSTRPLTLSHG--SLEHVLLV--PT--ASFFIASQL-------------QEQFNKI- 40
Query: 633 VYPEKSTDQSNGDEGGTEGTSSMDPQLERQVETIRNLVDSYMKIVTKTCRDLVPKT---I 689
PE T+ D+ E T+ E LV ++ V+ +
Sbjct: 41 -LPE-PTEGFAADD---EPTT--------PAE----LVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 690 MLLIINNA-KDFINGELLAHLYASGDQAAMMEESPEEALKREEMLRMY-HACKEALR 744
+ L + ++ G + H A A +++E+ +K +E+++ Y A A R
Sbjct: 84 LNLCLTEFENCYLEGNDI-HALA----AKLLQENDTTLVKTKELIKNYITARIMAKR 135
Score = 40.4 bits (94), Expect = 0.003
Identities = 65/437 (14%), Positives = 129/437 (29%), Gaps = 168/437 (38%)
Query: 396 AFAIRNI---HG-IRVGLFTP-DMAFEAIVKKQISRLKEPALKCVDLVVAELSNVVRICT 450
A++ R + HG + L P F A S+L+E K + +
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIA------SQLQEQFNKILPEPTEGFAA-----D 51
Query: 451 DKMSRYPRLREETERI---ITSYVRNREQQCKEQIV--LLVDCELAYMNTN--HEDFIGF 503
D+ + L + ++S V + +Q++ L + E Y+ N H
Sbjct: 52 DEPTTPAEL---VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH------ 102
Query: 504 ANVMFSAQQTTDNSNKAGRKLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKD 563
+A+ +N + ++I+ ++
Sbjct: 103 ---ALAAKLLQENDTTLVKT--KELIK----------------------------NYITA 129
Query: 564 EEEREKKYMLPLDGLKLRDVEQGFMSRRHTFALF----NPEG-----RNVYKDYKQL--- 611
++ + + R V +G A+F N + R++Y+ Y L
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEG---NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 612 ----------ELSCENQD---------DVDSWKASFLRAGVYPEKSTDQSNGDEGGTEGT 652
EL D ++ W L P + D+
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEW----LE---NPSNTPDK----------- 228
Query: 653 SSMDPQLERQVETIRNLVDSYMKIVTKTCRDLVPKTIMLL------IINNAKDFINGELL 706
Y+ + +C P I ++ + F GEL
Sbjct: 229 -------------------DYLLSIPISC----P-LIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 707 AHLY-ASGDQ-----AAMMEESPEEALKREEMLRMYHACKEALRI---IGDVS-MATVST 756
++L A+G A + E+ + + ++A+ + IG A +T
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWE-------SFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 757 PVPPPVKNDWLATSIDN 773
+PP + L S++N
Sbjct: 318 SLPPSI----LEDSLEN 330
Score = 37.7 bits (87), Expect = 0.018
Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 60/200 (30%)
Query: 78 MTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLID 137
M Y + +++ D G S +L+I + +
Sbjct: 1633 MDLYKTS------------KAAQDVWNRADNHFKDTYGFS------------ILDIVINN 1668
Query: 138 LPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSDALQIAKQVDPD 197
LT G++ I + M+F+ I + + +TS + +
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS----YTFRSEKG 1724
Query: 198 VLNLTLVDLPGMTKVPIGDQPA--DIEY----QIKSMILQFIKRDNCLILA--------- 242
+L+ T T QPA +E +KS + + + A
Sbjct: 1725 LLSATQF-----T------QPALTLMEKAAFEDLKS---KGLIPADA-TFAGHSLGEYAA 1769
Query: 243 -VTPANSDLANSDALKLAKE 261
+ A+ ++ +++
Sbjct: 1770 LASLADV-MSIESLVEVVFY 1788
Score = 33.9 bits (77), Expect = 0.27
Identities = 40/195 (20%), Positives = 57/195 (29%), Gaps = 80/195 (41%)
Query: 20 AFTQLGVP----MQM----DL------PQIAVVGGQS-------AGKSSVL--ENFV--- 53
FTQ P M+ DL P A G S A + V+ E+ V
Sbjct: 1730 QFTQ---PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Query: 54 ---GR---DFLPRGS------GIVTRRPLVLQLINSMTEYAEFLHCKGKKFVDFD-EVRR 100
G +PR G++ P G+ F E +
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINP-------------------GRVAASFSQEALQ 1827
Query: 101 EIEAETDRITGSNKGISNVPINLRVYSPN---VLNITLIDLPGLTKVP--VGDQPIDIE- 154
+ + TG I N N N V L L +T V + Q IDI
Sbjct: 1828 YVVERVGKRTGWLVEIVN--YN----VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
Query: 155 -------QQIKDMLF 162
++++ LF
Sbjct: 1882 LQKSLSLEEVEGHLF 1896
Score = 33.1 bits (75), Expect = 0.44
Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 54/162 (33%)
Query: 584 EQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYPEKSTDQSN 643
EQG M G ++YK + + DV W RA + +
Sbjct: 1628 EQG-M------------GMDLYK-------TSKAAQDV--WN----RA----DNHFKDTY 1657
Query: 644 G-------DEGGTEGTSSMDPQLERQVETIRNLVDSYMKIVTKTCRD--LVPKTIMLLII 694
G T + ++ IR ++Y ++ +T D L + I I
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKR---IR---ENYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 695 NNAKDFI----NGELLAHLYASGDQAAM--MEESPEEALKRE 730
++ + G L A + Q A+ ME++ E LK +
Sbjct: 1712 EHSTSYTFRSEKGLLSATQFT---QPALTLMEKAAFEDLKSK 1750
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 46.0 bits (109), Expect = 3e-06
Identities = 18/114 (15%), Positives = 45/114 (39%), Gaps = 19/114 (16%)
Query: 528 VIRKGWMCIHNLGIMKGGSRDYWFVLTSEN-ISWFKDEEEREKK--YMLPLDGLKLRDVE 584
++ GW+ + + WF L S+ + ++ D+ + + +P+D + +R +
Sbjct: 5 FVKSGWL--LRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQ 62
Query: 585 QGF-------MSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRA 631
+ S+ + +G+ + L E+ DD +WK + +
Sbjct: 63 ECRDTQPPDGKSKDCMLQIVCRDGKTIS-------LCAESTDDCLAWKFTLQDS 109
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 46.3 bits (109), Expect = 5e-06
Identities = 15/119 (12%), Positives = 40/119 (33%), Gaps = 12/119 (10%)
Query: 510 AQQTTDNSNKAGRKLGNQVIRKGWMCIHNLGIMKGGSRDY---WFVLTSENISWFKDEE- 565
+S+ + I + + + K +Y FVLT +++++
Sbjct: 2 GHHHHHHSH-----MNFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAE 56
Query: 566 EREKKYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
++ +K + + +K ++ + + + V D L + + D W
Sbjct: 57 KKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQ---VVHDANTLYIFAPSPQSRDLW 112
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 44.9 bits (106), Expect = 8e-06
Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 27/123 (21%)
Query: 526 NQVIRKGWMCIHNLGIMKGGSR------DYWFVLTSENISWFKDEEEREK---------- 569
++V + G + + I +GG + W VLT ++ ++++
Sbjct: 10 HEVEKSGLL--NMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSR 67
Query: 570 -KYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASF 628
+ + L G L + SRR+ + G L +++ ++ +W +
Sbjct: 68 PESSVDLRGAAL-AHGRHLSSRRNVLHIRTIPGHEFL-------LQSDHETELRAWHRAL 119
Query: 629 LRA 631
Sbjct: 120 RTV 122
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 44.2 bits (104), Expect = 1e-05
Identities = 17/115 (14%), Positives = 41/115 (35%), Gaps = 18/115 (15%)
Query: 521 GRKLGNQVIRKGWM---CIHNLGIMKGGSR---DYWFVLTSENISWFKDEEER----EKK 570
G + +G + K +R + + VL ++ ++KD +
Sbjct: 1 GSSGSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYH 60
Query: 571 YMLPLDGLKLR-DVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
+P+ + + V + R+H F L +G+ +++ ++ SW
Sbjct: 61 GEVPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYL-------FQAKDEAEMSSW 108
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 43.4 bits (102), Expect = 2e-05
Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 527 QVIRKGWMCIHNLGIMKGGSRDYWFVLTSEN-ISWFKDEEEREKKYMLPLDGLKLRDVE- 584
++++GW+ H G R +F+L ++ +K+ + + PL+ + +
Sbjct: 7 AIVKEGWL--HKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQL 64
Query: 585 -QGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
+ R +TF + + V + E ++ + W
Sbjct: 65 MKTERPRPNTFIIRCLQWTTVIERT----FHVETPEEREEW 101
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 43.4 bits (102), Expect = 3e-05
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 18/111 (16%)
Query: 523 KLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSE--NISWFKDEEEREKKYMLPLDGLKL 580
+ Q G++ I + R +F+L ++ + W+ D + + L+L
Sbjct: 10 YVDRQNRICGFLDIEDNENSGKFLR-RYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQL 68
Query: 581 RDVEQ-------GFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
+ + F + ++ L +Q D+ W
Sbjct: 69 TYISKVSIATPKQKPKTPFCFVINALS--------QRYFLQANDQKDLKDW 111
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 44.0 bits (103), Expect = 3e-05
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 20/109 (18%)
Query: 528 VIRKGWMCIHNLGIMKGGSRD-----YWFVLTSENISWFKDEEEREKKYMLPLDGLKLRD 582
+ +G++ + S YW L + ++ D++ L + L
Sbjct: 18 LYFEGFL-------LIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLT 70
Query: 583 VEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRA 631
+ F L P+ ++++L EN + + W+ L
Sbjct: 71 EQNSTEKNCAKFTLVLPK--------EEVQLKTENTESGEEWRGFILTV 111
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 45.3 bits (106), Expect = 3e-05
Identities = 19/156 (12%), Positives = 39/156 (25%), Gaps = 22/156 (14%)
Query: 521 GRKLGNQVIRKGWMCIHNLGIMKGGSRD----------YWFVLTSENISWFKDEEEREKK 570
G K V + GW+ L ++ + YW L + +++ + +
Sbjct: 4 GSKEQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTE 63
Query: 571 YMLPLDGLK-----LRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWK 625
+ + H F L N G +Q D+++W
Sbjct: 64 QNSAPRCALFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYL-------FQATSQTDLENWV 116
Query: 626 ASFLRAGVYPEKSTDQSNGDEGGTEGTSSMDPQLER 661
+ A + + Q
Sbjct: 117 TAIHSACASLFAKKHGKEDTVRLLKSQTRSLLQKID 152
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 42.7 bits (100), Expect = 4e-05
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 30/115 (26%)
Query: 519 KAGRKLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEER---------EK 569
K K G + W YW VL+ + ++ + R
Sbjct: 10 KTLLKEGRKPALSSW-------------TRYWVVLSGATLLYYGAKSLRGTDRKHYKSTP 56
Query: 570 KYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
+ + G ++ + F L NP+ NVYK ++ W
Sbjct: 57 GKKVSIVGWMVQLPDDP--EHPDIFQLNNPDKGNVYK------FQTGSRFHAILW 103
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 42.2 bits (99), Expect = 5e-05
Identities = 9/83 (10%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 547 RDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLR-----DVEQGFMSRRHTFALFNPEG 601
+ + V+ ++ + ++KD + + +V + ++H F L +G
Sbjct: 24 HNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLSDG 83
Query: 602 RNVYKDYKQLELSCENQDDVDSW 624
++ +++++W
Sbjct: 84 NEYL-------FQAKDDEEMNTW 99
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 42.1 bits (99), Expect = 5e-05
Identities = 10/102 (9%), Positives = 35/102 (34%), Gaps = 16/102 (15%)
Query: 525 GNQVIRKGWMCIHNLGIMKGGS-RDYWFVLTSENISWFKDEE-EREKKYMLPLDGLKLRD 582
+ + + L ++ + W + ++ +++D + + L L G ++
Sbjct: 5 SSGLETSSY-----LNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEV-- 57
Query: 583 VEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
V ++F + + L ++ +++ W
Sbjct: 58 VPDPSPDHLYSFRILHKGEELAK-------LEAKSSEEMGHW 92
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 44.2 bits (103), Expect = 8e-05
Identities = 16/137 (11%), Positives = 38/137 (27%), Gaps = 24/137 (17%)
Query: 521 GRKLGNQVIRKGWMCIHNLGIMKGGSRD----------YWFVLTSENISWFKDEEEREK- 569
G V + G + + N + K + YW L + +++ +
Sbjct: 4 GSAAQGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGID 63
Query: 570 -----KYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
K+ + ++ + + F L N G +Q ++++W
Sbjct: 64 HNSVPKHAVWVEN-SIVQAVPEHPKKDFVFCLSNSLGDAFL-------FQTTSQTELENW 115
Query: 625 KASFLRAGVYPEKSTDQ 641
+ A
Sbjct: 116 ITAIHSACAAAVARHHH 132
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 43.5 bits (102), Expect = 2e-04
Identities = 44/293 (15%), Positives = 90/293 (30%), Gaps = 39/293 (13%)
Query: 357 QINTMELSGGAKINRLFHERFPFEIVKMEFDEKELRREIAFAIRN-------IHGIRVGL 409
Q+ M G F + P + + +L RE + IR I+ +
Sbjct: 85 QVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLRE-QW-IRAKYERQEFIYPEKQEP 142
Query: 410 FTPDMAFEAIVKKQISRLKEPALKCVDLVVAELSNVVRICTDKMSRYPRLREETERIITS 469
++ E + K+ + + V+ E ++ ++ P+ + E + +
Sbjct: 143 YSAGYR-EGFLWKRGRDNGQFLSRK--FVLTEREGALKYFNRNDAKEPKAVMKIEHLNAT 199
Query: 470 YVRNREQQCKE-QIVLLVDCELAYMNTNHED-------FIGFANVMFSAQQT---TDNSN 518
+ + Q+ L D + HED F F Q +
Sbjct: 200 FQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGASDA 259
Query: 519 KAGRKLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPL--- 575
KL +++G+M G R WF + + +FKD + + + +
Sbjct: 260 DLVPKLSRNYLKEGYM-EKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSK 318
Query: 576 -DGLKLRDV---EQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
G + H + P+ ++ +CE + D W
Sbjct: 319 ESGYTVLHGFPPSTQGHHWPHGITIVTPD--------RKFLFACETESDQREW 363
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 41.2 bits (96), Expect = 2e-04
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 12/104 (11%)
Query: 547 RDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVE----QGFMSRRHTFALFNPEGR 602
R +W V +S++K ++E P+ L L+ E ++ L P
Sbjct: 29 RQHWVVFKETTLSYYKSQDEAPGD---PIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPE 85
Query: 603 NVYKDYKQLELSCENQDDVDSWKASFLRAGVYPEKSTDQSNGDE 646
+ ++ L C+++ W A R D S E
Sbjct: 86 GM----SEIYLRCQDEQQYARWMAG-CRLASKGRTMADSSYTSE 124
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 41.1 bits (96), Expect = 2e-04
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 550 WFVLTSENISWFKDEEEREKKY----MLPLDGLKLR--DVEQGFMSRRHTFALFNPEGRN 603
+FVL + F REKK +L LDG + D + G R F G
Sbjct: 29 FFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKE-GDT 87
Query: 604 VYKDYKQLELSCENQDDVDSW 624
V + +++ D W
Sbjct: 88 VI-------FASDDEQDRILW 101
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 129
Score = 40.0 bits (93), Expect = 4e-04
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 521 GRKLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPL 575
G + ++++GWM +H R YW L S+ ++ F++E + +PL
Sbjct: 1 GSSGSSGMVKEGWM-VHYTSRDNLRKRHYW-RLDSKCLTLFQNESGSKYYKEIPL 53
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 125
Score = 39.2 bits (91), Expect = 9e-04
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 521 GRKLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPL 575
G + +R+GW+ +H R YW L + I+ F++ +PL
Sbjct: 1 GSSGSSGTLREGWV-VHYSNKDTLRKRHYW-RLDCKCITLFQNNTTNRYYKEIPL 53
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 39.5 bits (91), Expect = 0.001
Identities = 16/121 (13%), Positives = 38/121 (31%), Gaps = 24/121 (19%)
Query: 528 VIRKGWMCIHNLGIMKGGSRDY---WFVLTSENISWFKDEEEREK----KYMLPLDGLKL 580
VI + + K ++ F+LT +S+++ + ER + K + ++ +
Sbjct: 3 VILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITC 62
Query: 581 RDV-----------------EQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDS 623
+ E+ + + P V D L + ++
Sbjct: 63 VETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKR 122
Query: 624 W 624
W
Sbjct: 123 W 123
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.0 bits (87), Expect = 0.003
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 307 QKQLLTLEKDVE-QFKHFRPDD-PSIKTKAMLQ 337
+KQ L K ++ K + D P++ KA ++
Sbjct: 18 EKQAL---KKLQASLKLYADDSAPALAIKATME 47
Score = 33.8 bits (76), Expect = 0.094
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 22/45 (48%)
Query: 388 EKELRREIAFAIRNIHGIRVGLFTPDMAFEAIVKKQISRLKEPAL 432
EK+ A++ + + L+ D A PAL
Sbjct: 18 EKQ-------ALKKLQA-SLKLYADDSA--------------PAL 40
Score = 32.2 bits (72), Expect = 0.33
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 337 QMIQQLQSDFERTIEGSGSA-QIN-TME 362
Q +++LQ+ + + S A I TME
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 4.2
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 724 EEALKR-EEMLRMYHA-CKEALRIIGDVSMATV 754
++ALK+ + L++Y AL I AT+
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI-----KATM 46
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 37.4 bits (87), Expect = 0.003
Identities = 13/104 (12%), Positives = 25/104 (24%), Gaps = 26/104 (25%)
Query: 523 KLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSEN--ISWFKDEEEREKKYMLPLDGLKL 580
K G + +GW + WF + + + ++ + L
Sbjct: 16 KFGGKGPIRGW-------------KSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVF 62
Query: 581 RDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
F + P R V L + + W
Sbjct: 63 DCKADA---EEGIFEIKTP-SR-VI------TLKAATKQAMLYW 95
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 39.0 bits (90), Expect = 0.003
Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 11/107 (10%)
Query: 532 GWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMSRR 591
G++ H + K + + L + +++ L L+ ++ R+
Sbjct: 136 GFL--HVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFSLIAGRK 193
Query: 592 -------HTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRA 631
H + + RN K+ + L E++ SW +F
Sbjct: 194 QYNAPTDHGLCIKPNKVRNETKELRL--LCAEDEQTRTSWMTAFRLL 238
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 37.3 bits (86), Expect = 0.004
Identities = 13/113 (11%), Positives = 33/113 (29%), Gaps = 21/113 (18%)
Query: 526 NQVIRKGWMCIHNLGIMKGGS----RDYWFVLTSENISWFKDEEEREKKY---MLPLDGL 578
I+ G++ + ++VLT + FK + ++ L L
Sbjct: 4 FTEIKSGFL------ERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSEC 57
Query: 579 KLRDVEQ-------GFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
+ + + F L + + + ++ + + SW
Sbjct: 58 TVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRG-HNWVFKADSYESMMSW 109
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 36.3 bits (84), Expect = 0.006
Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 33/125 (26%)
Query: 510 AQQTTDNSNKAG--RKLGNQVIRKGWMCIHNLGIMKGGSRDYWFVL--TSENISWFKDEE 565
+ + G K G K W + WFVL T + ++
Sbjct: 1 GSSGSSGRSYEGILYKKGA--FMKPW-------------KARWFVLDKTKHQLRYYDHRM 45
Query: 566 EREKKYMLPLDGLKLRDVEQGFMS------RRHTFALFNPEGRNVYKDYKQLELSCENQD 619
+ E K ++ L ++ + + F + + Y ++
Sbjct: 46 DTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTR-----RVY---NFCAQDVP 97
Query: 620 DVDSW 624
W
Sbjct: 98 SAQQW 102
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 35.1 bits (81), Expect = 0.012
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 29/109 (26%)
Query: 519 KAG--RKLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLD 576
+ G K N GW +D W VL + +S++K E+E E
Sbjct: 3 RCGVLSKWTN--YIHGW-------------QDRWVVLKNNALSYYKSEDETEYG---CRG 44
Query: 577 GLKLRDVEQGF-MSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
+ L F + + L ++ D W
Sbjct: 45 SICLSKAVITPHDFDECRFDISVND--------SVWYLRAQDPDHRQQW 85
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 36.6 bits (84), Expect = 0.012
Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 28/130 (21%)
Query: 545 GSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVE----QGFMSRRHTFALFNPE 600
G + YW +IS +K +EE P + LR E ++ L P
Sbjct: 65 GYKQYWCTFKDTSISCYKSKEESSGT---PAHQMNLRGCEVTPDVNISGQKFNIKLLIP- 120
Query: 601 GRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYPEKSTDQSNGDEGGTEGTSSMDPQLE 660
V + ++ L C+N+ W A+ A ++G + D
Sbjct: 121 ---VAEGMNEIWLRCDNEKQYAHWMAACRLA-----------------SKGKTMADSSYN 160
Query: 661 RQVETIRNLV 670
+V+ I + +
Sbjct: 161 LEVQNILSFL 170
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 36.3 bits (83), Expect = 0.036
Identities = 46/385 (11%), Positives = 113/385 (29%), Gaps = 48/385 (12%)
Query: 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLINSMTEYAEFLHCKGK 90
P + V G S GK+S ++ + ++ G T + + G+
Sbjct: 66 PMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAV--------------MHGE 111
Query: 91 K--FVDFDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVP--V 146
V + + + E ++ N + ++ + + +I++ID PG+
Sbjct: 112 TEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQR 171
Query: 147 GDQPIDIEQQIK------DMLF-------QFITKETCLILAVTPANTD---LATSDALQI 190
+ D ++ D++ I+ E + + D + + A +
Sbjct: 172 VSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMV 231
Query: 191 AKQVDPDVLNLT------LVDLPGMTKVPIGDQPA-DIEYQIKSMILQFIKRDNCLILAV 243
Q V +V P + +V IG + + + + ++D +
Sbjct: 232 ETQQLMRVYGALMWALGKVVGTPEVLRVYIGSFWSQPLLVPDNRRLFELEEQDLFRDIQG 291
Query: 244 TPANSDLANSDALKLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLR 303
P ++ L KL V L + ++ L + + LP +
Sbjct: 292 LPRHAALR-----KLNDLVKRARLVRVHAYIISYLKKEMPTVFGKENKKKQLILKLPVIF 346
Query: 304 DRLQKQLLTLEKDVEQFKHFRPDDPSIKTKAMLQMIQQLQSDFERTIEGSGSAQINTMEL 363
++Q + D + + + + +L + + + + +
Sbjct: 347 AKIQLEHHISPGDFPDCQKMQELLMAHDFTKFHSLKPKLLEALDDMLAQDIAKLMPLLRQ 406
Query: 364 SGGAKINRLFHERFPFEIVKMEFDE 388
+ F E
Sbjct: 407 EELESVEAGVAGGAFEGTRMGPFVE 431
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 35.8 bits (82), Expect = 0.049
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 23/138 (16%)
Query: 515 DNSNKAGRKLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLP 574
D+ N N R+GW+ LG + WF+LT + +F+ ++E + ++P
Sbjct: 201 DDGNDLTYTFFNPD-REGWL--LKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIP 257
Query: 575 LDGLKLRDVEQGFMSRRHTFALF--------------NPEGRNVYKDYKQLELSCENQDD 620
L+ L +R+VE + + F L+ +GR V ++ +S + ++
Sbjct: 258 LENLSIREVE--DPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEE 315
Query: 621 VDSW----KASFLRAGVY 634
+ W KAS R Y
Sbjct: 316 KEEWMKSIKASISRDPFY 333
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 32.1 bits (73), Expect = 0.15
Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 28/104 (26%)
Query: 523 KLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYM--LPLDGLKL 580
K N GW + WFVL + +S++ +++ K + + ++
Sbjct: 7 KWTN--YLTGW-------------QPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEI 51
Query: 581 RDVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
+ + L P ++ Y + N + W
Sbjct: 52 KVHS----ADNTRMELIIPGEQHFY-------MKAVNAAERQRW 84
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 33.8 bits (77), Expect = 0.24
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 17/116 (14%)
Query: 525 GNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKY----MLPLDGLKL 580
+++I G + + + S+ F L + + K + R L +DGL++
Sbjct: 331 SSELIYSG--ELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEV 388
Query: 581 RDVEQG-----FMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRA 631
D+E G +S ++ F L + + L + W +F R
Sbjct: 389 VDLEDGKDRDLHVSIKNAFRLHRGATGDSH------LLCTRKPEQKQRWLKAFARE 438
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 32.7 bits (74), Expect = 0.51
Identities = 11/82 (13%), Positives = 35/82 (42%)
Query: 543 KGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMSRRHTFALFNPEGR 602
K GS+ ++ S +S +++ + ++M+P + L++R + + + +
Sbjct: 276 KDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSADAEANAVCEIVHVKSE 335
Query: 603 NVYKDYKQLELSCENQDDVDSW 624
+ + + L C + + +
Sbjct: 336 SEGRPERVFHLCCSSPESRKDF 357
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 32.0 bits (72), Expect = 0.73
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 33 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV-----TRRPLVLQLIN 76
+AV G +GKSS + G G+ T + N
Sbjct: 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN 118
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.86
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 7/31 (22%)
Query: 453 MSRYPRLREETERIITSYVRN-REQQCKEQI 482
+++ RL +E E I R RE+Q ++++
Sbjct: 74 IAQADRLTQEPESI-----RKWREEQ-RKRL 98
>3fxa_A SIS domain protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Length = 201
Score = 29.9 bits (68), Expect = 2.5
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 229 ILQFIKRDNCLILAVTP-ANSDLA-NSDA---LKLAKEVDPPGLHP 269
++ K ++ VT +S +A +D + ++KE DP +
Sbjct: 111 LIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLA 156
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand,
phosphatidyl glycerol, CO-repressor peptide,
transcription; HET: DR9; 1.20A {Mus musculus} PDB:
3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Length = 246
Score = 30.1 bits (68), Expect = 2.5
Identities = 15/107 (14%), Positives = 25/107 (23%), Gaps = 31/107 (28%)
Query: 269 PSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQKQLLTLEKDVEQFKHFRPDDP 328
+ L + Q N L ++ P D+ Q+ LL+L
Sbjct: 164 LDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLLLSL--------------V 209
Query: 329 SIKTKAMLQMIQQLQSDFERTIEGSGSAQINTMELSGGAKINRLFHE 375
+ R + + L N L E
Sbjct: 210 EV-----------------RALSMQAKEYLYHKHLGNEMPRNNLLIE 239
>3ccy_A Putative TETR-family transcriptional regulator; APC88698,
structural G PSI-2, protein structure initiative; HET:
MSE; 2.01A {Bordetella parapertussis 12822}
Length = 203
Score = 29.6 bits (67), Expect = 3.2
Identities = 9/72 (12%), Positives = 15/72 (20%), Gaps = 3/72 (4%)
Query: 272 RHLADRLGTPYLQRVLNQ---QLTNHIRDTLPGLRDRLQKQLLTLEKDVEQFKHFRPDDP 328
L + V+ L R L + L + +
Sbjct: 97 LFLEIYATSRDRHVVMLTCLDALPEDQRKALIAKQRELIAYVRDALLQLRPDMAANRTLA 156
Query: 329 SIKTKAMLQMIQ 340
+ T MI
Sbjct: 157 HVDTMLFFGMIN 168
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 5.4
Identities = 18/139 (12%), Positives = 34/139 (24%), Gaps = 56/139 (40%)
Query: 322 HFRPDDPSIKTKAMLQMIQQLQSDFERTIEGS--------------------GSAQINTM 361
F +P + K M+Q + ++ D E E S ++
Sbjct: 911 LFNGYNP--EKKEMIQEVI-VEEDLE-PFEASKETAEQFKHQHGDKVDIFEIPETGEYSV 966
Query: 362 ELSGGAKINRLFHERFP----------FEIVKMEFDEKELR---REIAFAI--------- 399
+L GA + RF + + + F +
Sbjct: 967 KLLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIA 1026
Query: 400 ----------RNIHGIRVG 408
+ +H VG
Sbjct: 1027 SGITDPYEMYKYVHVSEVG 1045
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 28.5 bits (64), Expect = 5.5
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 37 VVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66
+VG +GK+++L+ + G T
Sbjct: 7 IVGNTGSGKTTLLQQLMKTKKSDLGMQSAT 36
>3vpr_A Transcriptional regulator, TETR family; all alpha,
helix-turn-helix, transcriptional repressor, DNA
protein; 2.27A {Thermus thermophilus}
Length = 190
Score = 28.4 bits (64), Expect = 7.4
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 272 RHLADRLGTPYLQRVLNQ---QLTNHIRDTLPGLRDRLQKQLLTLEKDVEQFKHFRPDDP 328
H + Q L+ R LRDR ++ L + + + FR D
Sbjct: 85 AHARYFEENYPFFVTMLQGIKSLSPENRLKTIALRDRHEENLRAILRRGVEQGVFREVDV 144
Query: 329 SIKTKAMLQMIQ 340
++ +A+L M+
Sbjct: 145 ALAGRAVLSMLN 156
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 28.7 bits (64), Expect = 8.1
Identities = 13/110 (11%), Positives = 38/110 (34%), Gaps = 7/110 (6%)
Query: 253 SDALKLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQKQLLT 312
+ L E+ + L ++ + +L+++++ L +Q +L+
Sbjct: 319 PEVKSLMLELC--DIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIK 376
Query: 313 LEKDVEQFKHFRPDDPSIKTKAML-QMIQQLQSDFERTIEGSGSAQINTM 361
+ + +F + T+ + +MIQ + + G +
Sbjct: 377 SILERDPHGNFNV--SRVPTEKLFIEMIQSRLN--DMKKRGEYKGSFTPV 422
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand
binding pocket, hormone/growth factor complex; HET: P1A;
2.75A {Tribolium castaneum}
Length = 235
Score = 28.1 bits (63), Expect = 8.4
Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 31/109 (28%)
Query: 267 LHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQKQLLTLEKDVEQFKHFRPD 326
+P R + L+ + L + R T P R K LL L
Sbjct: 150 YNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRL------------- 196
Query: 327 DPSIKTKAMLQMIQQLQSDFERTIEGSGSAQINTMELSGGAKINRLFHE 375
P++ R+I + +L G I+ E
Sbjct: 197 -PAL-----------------RSIGLKCLEHLFFFKLIGDVPIDTFLME 227
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein
structure initiative; 1.90A {Vibrio cholerae o1 biovar
el tor str} PDB: 2pmb_A
Length = 462
Score = 28.8 bits (64), Expect = 8.5
Identities = 7/62 (11%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 489 ELAYMNTNHEDFIGFANVMFSAQQTTDNSNKAGRKLGNQVIRKGWMCIHNLG--IMKGGS 546
L V + + + R++G+++ + G M+G
Sbjct: 134 ILRNAGALIPGATPNLVVCWGGHSINEVEYQYTREVGHELGLRELNICTGCGPGAMEGPM 193
Query: 547 RD 548
+
Sbjct: 194 KG 195
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 28.1 bits (62), Expect = 8.6
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
Query: 24 LGVPMQMDLPQIAVVGGQSAGKSSV---LENFVGRDFLPRGSGIVTRRPLVLQLINSMTE 80
LG P M LP I + G GK+++ L + G ++ V L
Sbjct: 3 LGSPEFMLLPNILLTGTPGVGKTTLGKELASKSGLKYI-----------NVGDLAREEQL 51
Query: 81 YAEFLHCKGKKFVDFDEVRREIEAE 105
Y + +D D V E++ +
Sbjct: 52 YDGYDEEYDCPILDEDRVVDELDNQ 76
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 28.7 bits (64), Expect = 8.7
Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
Query: 133 ITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQF---ITKETCLILAVTPAN------TDLA 183
L +LPG + + ++ + D + + I K+T +I+ + + +
Sbjct: 103 HYLPELPGHPSIERSCKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFK 162
Query: 184 TSDALQIAKQVDPDVLNLTLVDLPGMTKVP-IGDQPADIEY 223
+ AK + + VD +V + +QP ++
Sbjct: 163 --KVINTAKNKEA----IVFVDDASGARVRLLFNQPPALKL 197
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN
factor, transcription-receptor-agonist comple; HET: 470;
1.75A {Homo sapiens} PDB: 1yok_A* 1yuc_A* 4dor_A*
1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Length = 257
Score = 28.2 bits (63), Expect = 9.8
Identities = 17/109 (15%), Positives = 29/109 (26%), Gaps = 31/109 (28%)
Query: 267 LHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRLQKQLLTLEKDVEQFKHFRPD 326
++L + +Q +N L ++ P ++ + LL L
Sbjct: 173 FSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRL------------- 219
Query: 327 DPSIKTKAMLQMIQQLQSDFERTIEGSGSAQINTMELSGGAKINRLFHE 375
P I R I + L+G N L E
Sbjct: 220 -PEI-----------------RAISMQAEEYLYYKHLNGDVPYNNLLIE 250
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.392
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,033,540
Number of extensions: 761117
Number of successful extensions: 2195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2142
Number of HSP's successfully gapped: 136
Length of query: 775
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 674
Effective length of database: 3,881,772
Effective search space: 2616314328
Effective search space used: 2616314328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.8 bits)