RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3395
(775 letters)
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 257 bits (657), Expect = 3e-80
Identities = 204/304 (67%), Positives = 241/304 (79%), Gaps = 5/304 (1%)
Query: 7 LEQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66
+E LIP+VN+LQDAF+ +G +DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT
Sbjct: 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
Query: 67 RRPLVLQLINSMTEYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNVPINLRVY 126
RRPLVLQL+NS TEYAEFLHCKGKKF DF+EVR EIEAETDR+TG+NKGIS VPINLRVY
Sbjct: 61 RRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVY 120
Query: 127 SPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPANTDLATSD 186
SP+VLN+TL+DLPG+TKVPVGDQP DIE QI+DML QF+TKE CLILAV+PAN+DLA SD
Sbjct: 121 SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 180
Query: 187 ALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCLILAVTPA 246
AL+IAK+VDP V +TK+ + D+ D +++ +L +R ++ +
Sbjct: 181 ALKIAKEVDPQGQRTIGV----ITKLDLMDEGTDARDVLENKLLPL-RRGYIGVVNRSQK 235
Query: 247 NSDLANSDALKLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTLPGLRDRL 306
+ D LA E HPSYRHLADR+GTPYLQ+VLNQQLTNHIRDTLPGLR++L
Sbjct: 236 DIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKL 295
Query: 307 QKQL 310
Q QL
Sbjct: 296 QSQL 299
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 256 bits (655), Expect = 7e-80
Identities = 157/311 (50%), Positives = 206/311 (66%), Gaps = 14/311 (4%)
Query: 8 EQLIPIVNKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 67
+QLIP++NKLQD F LG +DLPQI VVG QS+GKSSVLEN VGRDFLPRGSGIVTR
Sbjct: 1 DQLIPVINKLQDVFNTLGSD-PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTR 59
Query: 68 RPLVLQLINSMT--------EYAEFLHCKGKKFVDFDEVRREIEAETDRITGSNKGISNV 119
RPL+LQL + E+ EFLH F DF E+R EI +TDR+TG NKGIS
Sbjct: 60 RPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQ 119
Query: 120 PINLRVYSPNVLNITLIDLPGLTKVPVGDQPIDIEQQIKDMLFQFITKETCLILAVTPAN 179
PINL++YSP+V+N+TL+DLPG+TKVPVGDQP DIEQQI+ M+ +I K+ +I+AVTPAN
Sbjct: 120 PINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179
Query: 180 TDLATSDALQIAKQVDPDVLNLTLVDLPGMTKVPIGDQPADIEYQIKSMILQFIKRDNCL 239
TDLA SDALQ+AK+VDP+ V +TK+ + D+ D ++ + + +
Sbjct: 180 TDLANSDALQLAKEVDPEGKRTIGV----ITKLDLMDKGTDA-MEVLTGRVIPLTLGFIG 234
Query: 240 ILAVTPANSDLANSDALKLAKEVDPPGLHPSYRHLADRLGTPYLQRVLNQQLTNHIRDTL 299
++ + + S L E+ HP Y+ +A+R GT YL + LN+ L HIRDTL
Sbjct: 235 VINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTL 294
Query: 300 PGLRDRLQKQL 310
P L+ ++ K L
Sbjct: 295 PDLKVKVSKML 305
>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}
Length = 111
Score = 102 bits (254), Expect = 2e-26
Identities = 84/109 (77%), Positives = 101/109 (92%)
Query: 528 VIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGF 587
VIRKGW+ I+N+GIMKGGS++YWFVLT+EN+SW+KD+EE+EKKYML +D LKLRDVE+GF
Sbjct: 3 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGF 62
Query: 588 MSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYPE 636
MS +H FALFN E RNVYKDY+QLEL+CE Q++VDSWKASFLRAGVYPE
Sbjct: 63 MSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPE 111
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 55.7 bits (133), Expect = 5e-10
Identities = 17/107 (15%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Query: 526 NQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVE- 584
+ I+ GW+ + + +FVL ++ + ++KDEE+ + + + L G ++++
Sbjct: 6 SGPIKMGWL--KKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIAT 63
Query: 585 QGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRA 631
+ + F + L +Q +++ W R
Sbjct: 64 NPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRV 110
>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 113
Score = 51.8 bits (123), Expect = 9e-09
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 527 QVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQG 586
+ IR+G++ G + + W VL + I ++K + + K M+PL G L Q
Sbjct: 4 KRIREGYL--VKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQD 61
Query: 587 FMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRA 631
F R F + + ++ D+W +A
Sbjct: 62 FGKRMFVF-------KITTTKQQDHFFQAAFLEERDAWVRDINKA 99
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 209
Score = 52.6 bits (125), Expect = 3e-08
Identities = 22/195 (11%), Positives = 61/195 (31%), Gaps = 18/195 (9%)
Query: 441 ELSNVVRICTDKMSRYPRLREETERIITSYVRNREQQCKE-QIVLLVDCELAYMNTNHED 499
++ V + + +E+ E +I + +E Q + Y +
Sbjct: 10 DVETFVADTLKGENLSKKAKEKRESLIKKIKDVKSVYLQEFQDKGDAEDGDEYDDPFAGP 69
Query: 500 FIGFANVMFSAQQTTDNSNKAGR------KLGNQVIRKGWMC--IHNLGIMKGGSRDYWF 551
+ + D + + + VI+ G++ + + + W
Sbjct: 70 ADTISLASERYDKDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWC 129
Query: 552 VLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMS--RRHTFALFNPEGRNVYKDYK 609
L+ ++ ++++++K +DG +R + F + P+ R
Sbjct: 130 ALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQ---- 185
Query: 610 QLELSCENQDDVDSW 624
+ + D + W
Sbjct: 186 ---FTAASPKDAEEW 197
>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8
(ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 51.1 bits (121), Expect = 3e-08
Identities = 16/126 (12%), Positives = 41/126 (32%), Gaps = 29/126 (23%)
Query: 526 NQVIRKGWMCIHNLGIMKGGS----RDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLR 581
+ ++ W+ G+ W VL + +K ++ + + L+ ++
Sbjct: 6 SGIVMADWL-------KIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEI- 57
Query: 582 DVEQGFMSRRHTFALFNPEGRNVY----------------KDYKQLELSCENQDDVDSWK 625
+E+ F LF+P ++++ L + ++ D W
Sbjct: 58 -IERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWM 116
Query: 626 ASFLRA 631
+ A
Sbjct: 117 DALELA 122
>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 127
Score = 50.7 bits (120), Expect = 3e-08
Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Query: 530 RKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMS 589
R+GW+ LG + WF+LT + +F+ ++E + ++PL+ L +R+V
Sbjct: 7 REGWL--LKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDP--R 62
Query: 590 RRHTFALFNPEGRN--------------VYKDYKQLELSCENQDDVDSWKASFLRA 631
+ + F L+NP + V ++ +S + ++ + W S +
Sbjct: 63 KPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKAS 118
>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 48.6 bits (115), Expect = 1e-07
Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 8/106 (7%)
Query: 526 NQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQ 585
+ VI+ G+ G + + +F L I +FK E E+E ++PL + +
Sbjct: 1 SAVIKAGYC--VKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECK 58
Query: 586 GFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRA 631
+ + + ++ +++ SW + A
Sbjct: 59 QSDIMMRDNLFE------IVTTSRTFYVQADSPEEMHSWIKAVSGA 98
>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein
SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 46.8 bits (110), Expect = 5e-07
Identities = 12/99 (12%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 528 VIRKGWMCI--HNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQ 585
VI++G++ + + W V++ ++ +E+ ++ K + G +R
Sbjct: 1 VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPH 60
Query: 586 GFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
+ +D + E + + + W
Sbjct: 61 LRRDSKKESCFE-----LTSQDRRTYEFTATSPAEARDW 94
>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 102
Score = 41.0 bits (95), Expect = 4e-05
Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 14/103 (13%)
Query: 529 IRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFM 588
++ GW+ + + + W +IS++ +E+E K ++PL + V+
Sbjct: 2 VKSGWLDKLSPQGKRMFQK-RWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQGDNK 60
Query: 589 SRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRA 631
T + E +++ + W + L A
Sbjct: 61 FEVVT-------------TQRTFVFRVEKEEERNDWISILLNA 90
>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 122
Score = 41.0 bits (95), Expect = 7e-05
Identities = 10/85 (11%), Positives = 26/85 (30%), Gaps = 14/85 (16%)
Query: 547 RDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLR-------DVEQGFMSRRHTFALFNP 599
+ + IS++KD++ + L G ++ + ++H +
Sbjct: 33 DKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKHVLRVKLA 92
Query: 600 EGRNVYKDYKQLELSCENQDDVDSW 624
G L + ++ W
Sbjct: 93 NGALFL-------LQAHDDTEMSQW 110
>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2
(beta-adrenergic receptor kinase 1) {Cow (Bos taurus)
[TaxId: 9913]}
Length = 119
Score = 38.1 bits (87), Expect = 6e-04
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 12/108 (11%)
Query: 524 LGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDV 583
LG I G+M + +F L + W + E + + + V
Sbjct: 6 LGKDCIMHGYMSKMG-NPFLTQWQRRYFYLFPNRLEWRGEGEAPQSLLTMEEI----QSV 60
Query: 584 EQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRA 631
E+ + R + KQ L C++ ++ WK A
Sbjct: 61 EETQIKERKCL-------LLKIRGGKQFVLQCDSDPELVQWKKELRDA 101
>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 169
Score = 37.9 bits (87), Expect = 0.002
Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 24/121 (19%)
Query: 528 VIRKGWMCIHNLGIMKGGSRDY---WFVLTSENISWFKDEEEREKKYMLP--LDGLKLRD 582
VI + + K ++ F+LT +S+++ + ER ++ +D K+
Sbjct: 3 VILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITC 62
Query: 583 VEQGFMSRRHTFALFNPEGRN-------------------VYKDYKQLELSCENQDDVDS 623
VE + P V D L + ++
Sbjct: 63 VETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKR 122
Query: 624 W 624
W
Sbjct: 123 W 123
>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 36.1 bits (82), Expect = 0.003
Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 20/109 (18%)
Query: 529 IRKGWMCIHNLGIMKGGSRD-----YWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDV 583
+R+GW+ + ++D +++ L + I+ F++ +PL + +
Sbjct: 2 LREGWV-------VHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVES 54
Query: 584 EQGFM----SRRHTFALFNPEGRNVY----KDYKQLELSCENQDDVDSW 624
Q F + S + + W
Sbjct: 55 AQNFSLVPPGTNPHCFEIVTANATYFVGEMPGGTPGGPSGQGAEAARGW 103
>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and
3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens)
[TaxId: 9606]}
Length = 100
Score = 35.9 bits (82), Expect = 0.003
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 11/99 (11%)
Query: 526 NQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQ 585
+ ++G++ G + + WF L + +FKD+ E +L L +
Sbjct: 2 SLGTKEGYL--TKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDY 59
Query: 586 GFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
R + F L P + L + + D W
Sbjct: 60 S-QERVNCFCLVFPF--------RTFYLCAKTGVEADEW 89
>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 35.1 bits (79), Expect = 0.011
Identities = 18/141 (12%), Positives = 43/141 (30%), Gaps = 16/141 (11%)
Query: 525 GNQVIRKGWMCIHNLGIMKGGSR----DYWFVLTSENISWFKDEEEREKKYMLPLDGLKL 580
+ + GW+ N+ + +F L + +++K G
Sbjct: 15 KGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIF 74
Query: 581 RDVEQGFM----SRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSWKASFLRAGVYPE 636
D G + RR F L + + L+ +++ +++ W +
Sbjct: 75 LDSCMGVVQNNKVRRFAFELKMQDKSSYL-------LAADSEVEMEEWITILNKILQLNF 127
Query: 637 KSTDQSNGDEGGTEGTSSMDP 657
++ Q + G + P
Sbjct: 128 EAAMQEKRN-GDSHEDDESGP 147
>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 32.8 bits (74), Expect = 0.055
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 13/88 (14%)
Query: 525 GNQVIRKGWMCIHNLGIMKGGS--RDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRD 582
N +++ G + + G R +LT ++ D + K +P
Sbjct: 45 NNLILKMGPV------DKRKGLFARRRQLLLTEGPHLYYVDPVNKVLKGEIPWS-----Q 93
Query: 583 VEQGFMSRRHTFALFNPEGRNVYKDYKQ 610
+ TF + P D
Sbjct: 94 ELRPEAKNFKTFFVHTPNRTYYLMDPSG 121
>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId:
9606]}
Length = 95
Score = 31.8 bits (71), Expect = 0.068
Identities = 8/87 (9%), Positives = 27/87 (31%), Gaps = 9/87 (10%)
Query: 539 LGIMKGGS-RDYWFVLTSENISWFKDEEEREKKYMLPLDGLKLRDVEQGFMSRRHTFALF 597
L ++ + W + ++ +++D + L +V
Sbjct: 7 LNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLS--LVGCEVVPDPSPDHLYSFRI 64
Query: 598 NPEGRNVYKDYKQLELSCENQDDVDSW 624
+G + +L ++ +++ W
Sbjct: 65 LHKGEELA------KLEAKSSEEMGHW 85
>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2
isoform [TaxId: 9606]}
Length = 123
Score = 31.5 bits (70), Expect = 0.12
Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 517 SNKAGRKLGNQVIRKGWMCIHNLGIMKGGSRDYWFVLTSENISWFKDEEEREKKYMLPLD 576
S +G ++ + RK M ++ + VL ++ ++KD + +
Sbjct: 3 SGSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGE 62
Query: 577 GLKLR-----DVEQGFMSRRHTFALFNPEGRNVYKDYKQLELSCENQDDVDSW 624
V + R+H F L +G+ +++ ++ SW
Sbjct: 63 VPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYL-------FQAKDEAEMSSW 108
>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain
[TaxId: 10090]}
Length = 106
Score = 30.8 bits (68), Expect = 0.17
Identities = 9/83 (10%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
Query: 547 RDYWFVLTSENISWFKDEEEREKKYMLPLDGL-----KLRDVEQGFMSRRHTFALFNPEG 601
+ + V+ ++ + ++KD + + + +V + ++H F L +G
Sbjct: 24 HNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLSDG 83
Query: 602 RNVYKDYKQLELSCENQDDVDSW 624
++ +++++W
Sbjct: 84 NEYL-------FQAKDDEEMNTW 99
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA
ligase {Enterococcus faecalis [TaxId: 1351]}
Length = 313
Score = 31.1 bits (69), Expect = 0.44
Identities = 39/300 (13%), Positives = 84/300 (28%), Gaps = 37/300 (12%)
Query: 304 DRLQKQLLTLEKDVEQFKHFRPDDPSIKTKAMLQMIQQLQSDFERTIEGSGSAQINTMEL 363
DRL K+L+ +E + PD P+ + ++ + S + + ++
Sbjct: 39 DRLYKELVDIETEFPDLIT--PDSPTQRVGGK--VLSGFEKAPHDIPMYSLNDGFSKEDI 94
Query: 364 SGGAKINRLFHERFPFEIVKMEFDEKELRREIAFAIRNIHGIRVGLFTPDMAFEAIVKKQ 423
+ R + +++ D I+ N +R E I +
Sbjct: 95 FAFDERVRKAIGKPVAYCCELKIDGL----AISLRYENGVFVRGATRGDGTVGENITENL 150
Query: 424 ISRLKEPALKCVDLVVAELSNVVRICTDKMSRYPRLREETERIITSYVRNREQQCKEQIV 483
+ P + V K S E E + R
Sbjct: 151 RTVRSVPMRLTEPISV---EVRGECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQ 207
Query: 484 LLVDCELAYMNTNHEDFIGFANVMFSAQQTTDNSNKAGRKLGNQVIRKGWMCIHNLGIMK 543
L D ++ + A+ +T + + +G + + +C
Sbjct: 208 L--DTKIVAKRNLNTFLYTVADFGPMKAKTQFEALEELSAIGFRTNPERQLCQS------ 259
Query: 544 GGSRDYWFVLTSENISWFKDEEEREKKYMLPLDGL--KLRDVEQ----GFMSR--RHTFA 595
E ++ ++ E+ +DG+ K+ + GF + R A
Sbjct: 260 ----------IDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQDELGFTVKAPRWAIA 309
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 30.5 bits (67), Expect = 0.57
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 31 DLPQIAVVGGQSAGKSSVLENFVGRDFL 58
LP+IA+ G + GKSS + + + R L
Sbjct: 22 GLPEIALAGRSNVGKSSFINSLINRKNL 49
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR
{Staphylococcus aureus [TaxId: 1280]}
Length = 115
Score = 29.1 bits (65), Expect = 0.78
Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 273 HLADRLGTPYLQRV----LNQQLTNHIRDTLPGLRDRLQKQLLTLEKDVEQFKHFRPDDP 328
L P + TN I + + L ++ + K+ + +D
Sbjct: 14 SLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDV 73
Query: 329 SIKTKAMLQMIQQL 342
+ +K + +
Sbjct: 74 NAVSKIAANAVNGI 87
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 30.0 bits (66), Expect = 0.79
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 33 PQIAVVGGQSAGKSSVLENFVGRDFLP 59
P I + G Q++GK+S+L P
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTTDSVRP 30
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 29.7 bits (65), Expect = 1.0
Identities = 5/29 (17%), Positives = 16/29 (55%)
Query: 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLP 59
++ ++ ++G GK+S++ +V +
Sbjct: 1 NILKVIILGDSGVGKTSLMHRYVNDKYSQ 29
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 29.6 bits (65), Expect = 1.0
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 69
+ + +VG +AGKSS+L T P
Sbjct: 1 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP 38
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 29.2 bits (64), Expect = 1.1
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 31 DLP--QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCK 88
+LP ++ VVG GKS++ F + F+P + L I++ + L
Sbjct: 1 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTA 60
Query: 89 G 89
G
Sbjct: 61 G 61
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.1 bits (64), Expect = 1.2
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+ +VG GK+ +L F FL
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLA 33
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 29.2 bits (64), Expect = 1.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+ ++G + GKSS++ FV DF
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAE 30
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.9 bits (63), Expect = 1.4
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+ ++G GKS++ F G + P
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGP 28
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.9 bits (63), Expect = 1.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+ VVGG GKS++ F+ F+
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVS 33
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 28.9 bits (63), Expect = 1.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
IA++G +S GKSS+ FV F
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQF 29
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 29.3 bits (64), Expect = 1.4
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
+ ++G GK+S++ +V + F
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKF 27
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 28.8 bits (63), Expect = 1.5
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
+ ++G GK+S++ + F
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKF 28
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 28.7 bits (63), Expect = 1.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
I ++G S GK+S L + F P
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTP 32
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 28.9 bits (63), Expect = 1.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+ VVG + GKSS+++ + F
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTK 29
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 28.9 bits (63), Expect = 1.7
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
+ ++G +AGK+++L+ F G D
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDV 27
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.7 bits (63), Expect = 1.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+ V+G GKS++ FV F+
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIE 30
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 28.7 bits (63), Expect = 1.8
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 32 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 69
L + +VG S GKS++L T P
Sbjct: 1 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVP 38
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.7 bits (63), Expect = 1.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
++G GKS +L F + F P
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQP 30
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 28.7 bits (63), Expect = 1.9
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
V+G GKS +L F+ + F
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKF 30
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 28.4 bits (62), Expect = 1.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+ +G QS GK+S++ F+ F
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDN 27
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 28.5 bits (62), Expect = 2.0
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
I V+G + GK+ + F F
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPD 29
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 28.6 bits (62), Expect = 2.0
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
+ ++G Q GKS++ F G
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHD 28
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.4 bits (62), Expect = 2.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+AV G GKSS++ FV F
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRE 29
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 28.4 bits (62), Expect = 2.0
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+ +VG GKS++ F+ +F+
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVE 31
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.6 bits (62), Expect = 2.0
Identities = 22/152 (14%), Positives = 44/152 (28%), Gaps = 5/152 (3%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGKKFVD 94
+A+VG + GKS++L N +G P T R + ++ F+ G
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67
Query: 95 FDEVRREIEAETDRITGSNKGISNVPINLRVYSPNVLNITLIDLPGLTKVP-----VGDQ 149
+ + + N + V + + L + D
Sbjct: 68 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 127
Query: 150 PIDIEQQIKDMLFQFITKETCLILAVTPANTD 181
E+ +K E ++ A+
Sbjct: 128 AKYPEEAMKAYHELLPEAEPRMLSALDERQVA 159
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.5 bits (62), Expect = 2.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+ VVGG GKS++ F+ F+
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVT 32
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 28.5 bits (62), Expect = 2.1
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
I ++G AGK+++L +
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEV 30
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 29.0 bits (64), Expect = 2.1
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 6 GLEQLIPIV-NKLQDAFTQLGVPMQMDLPQIAVVGGQSAGKSSVLENFVGRD 56
G+ P KL + L L I V+G GKSS + + +G
Sbjct: 6 GINTFAPATQTKLLELLGNLKQEDVNSL-TILVMGKGGVGKSSTVNSIIGER 56
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 28.8 bits (64), Expect = 2.3
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 28 MQMDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 70
++M + +I + G GK++ E F+ + ++ PL
Sbjct: 1 VKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPL 43
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.4 bits (62), Expect = 2.3
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+A+ G GKS+++ F+ + F+
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIW 29
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 28.3 bits (62), Expect = 2.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
I ++G GKSS+L F F P
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDP 34
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.2 bits (62), Expect = 2.3
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
I ++G GK+ ++ F F P
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPP 32
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 28.4 bits (62), Expect = 2.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+ ++G GKSS++ FV F P
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDP 31
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.4 bits (62), Expect = 2.4
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+ V+G GKS++ FV F+
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVE 30
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.5 bits (62), Expect = 2.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
+ ++G + GKSS++ FV F
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQF 31
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 28.3 bits (62), Expect = 2.5
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+ ++G GKS++L F +F
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNL 31
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 28.3 bits (62), Expect = 2.5
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+ +G GK++ L + F P
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNP 32
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 28.4 bits (62), Expect = 2.5
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 29 QMDLPQIAVVGGQSAGKSSVLENFVGRDFLP 59
+ L ++ ++G GKSS++ +V F
Sbjct: 3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDT 33
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 28.0 bits (61), Expect = 2.7
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
+ V+G +GKSS++ F+ +
Sbjct: 8 LGVLGDARSGKSSLIHRFLTGSY 30
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 28.2 bits (61), Expect = 2.7
Identities = 17/70 (24%), Positives = 26/70 (37%)
Query: 31 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLINSMTEYAEFLHCKGK 90
++A G +AGKSS L + L R S R L+ + + L G
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 74
Query: 91 KFVDFDEVRR 100
V + R+
Sbjct: 75 AEVPEEMKRK 84
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.1 bits (61), Expect = 2.8
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
+ +G +AGK+++L
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRL 25
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 28.0 bits (61), Expect = 2.8
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
+ VVG GKS++ + F
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHF 28
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.2 bits (62), Expect = 2.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
I ++G GKS +L FV F P
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNP 29
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 27.8 bits (60), Expect = 3.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 34 QIAVVGGQSAGKSSVLENFVGRDF 57
++ + G +AGKSS+L GR+
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREA 26
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo
sapiens) [TaxId: 9606]}
Length = 200
Score = 28.2 bits (62), Expect = 3.1
Identities = 22/195 (11%), Positives = 55/195 (28%), Gaps = 14/195 (7%)
Query: 304 DRLQKQLLTLEKDVEQFKHFRPDDPSIKTKAMLQMIQQLQSDFERTIEGSGSAQINTMEL 363
+++ ++ + ++LQ L F + S Q E
Sbjct: 16 RETKRKYESVLQLGRALTAHL--------YSLLQTQHALGDAFADLSQKSPELQ---EEF 64
Query: 364 SGGAKINRLFHERFPFEIVKMEFDEKELRREIAFAIRNIHGIRVGLFTPDMAFEAIVKKQ 423
A+ +L + + + F + + + + + ++A
Sbjct: 65 GYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDL 124
Query: 424 ISRLKEPALKCVDLVVAELSNVVRICTDKMSRYPRLREETERIITSYVRNREQQCKEQIV 483
P + + DK + LR + + N+ + +Q++
Sbjct: 125 EELSLGPRDAGTRGRLESAQATFQAHRDKYEK---LRGDVAIKLKFLEENKIKVMHKQLL 181
Query: 484 LLVDCELAYMNTNHE 498
L + AY N +
Sbjct: 182 LFHNAVSAYFAGNQK 196
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 28.0 bits (61), Expect = 3.1
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
VVG + GK+ +L ++ F
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAF 34
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.7 bits (60), Expect = 3.4
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
+ +VG Q +GK++ + F
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQF 27
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 28.1 bits (61), Expect = 3.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
VVG + GK+ +L ++ F
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAF 30
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.7 bits (60), Expect = 3.5
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+ +VG GK++ ++ + +F
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEK 30
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 27.9 bits (61), Expect = 3.7
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
+ ++G GKS +L F +
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTN 33
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 27.7 bits (60), Expect = 3.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
I VVG GK+++L F F
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCF 27
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 27.8 bits (61), Expect = 3.8
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
+ ++G GK+ VL F F
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAF 31
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 27.5 bits (60), Expect = 3.9
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
++G GKS +L F + F+
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMA 31
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 27.7 bits (60), Expect = 4.2
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 66
+ VG +GK+ + + + + I
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITD 34
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 27.3 bits (59), Expect = 4.4
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
I +VG +AGK+++L +
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEI 25
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 27.7 bits (60), Expect = 4.5
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLP 59
VVG + GK+ +L ++ F
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPS 30
>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 480
Score = 28.1 bits (62), Expect = 4.7
Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 463 TERIITSYVRNREQQCKEQIVLLVDCELAYMNTNHEDFIGFANVMFSAQQTTDNSNKAGR 522
++ + Y+R E+ ++ + D EL + E+ + + M +A N A R
Sbjct: 240 GHQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKAAA----NFAWANR 295
Query: 523 KLGNQVIRKGWMCIHN 538
++ +R+ + +
Sbjct: 296 QMITHWVRESFQEVFK 311
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 27.3 bits (59), Expect = 4.9
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDF 57
+ +VG + GK+ +L F
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQF 27
>d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus
thermophilus [TaxId: 274]}
Length = 91
Score = 26.3 bits (58), Expect = 5.6
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 11/75 (14%)
Query: 388 EKELRREIAFAIRNIHGIRVGLFTPDMAFEAIVKKQISRLKEPALKCVDLVVAELSNVVR 447
E +L+R +A I+ + R+ L T + ++S + + V
Sbjct: 6 EAQLKRALAEEIQALEDPRLFLLT-------VEAVRLS----KDGSVLSVYVEAFREEEG 54
Query: 448 ICTDKMSRYPRLREE 462
RL
Sbjct: 55 ALRALSRAERRLVAA 69
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 27.8 bits (61), Expect = 5.7
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 34 QIAVVGGQSAGKSSVLENFVGRDFLPRGS 62
+AV G +GKSS + G G+
Sbjct: 58 NVAVTGETGSGKSSFINTLRGIGNEEEGA 86
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 26.9 bits (58), Expect = 6.2
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 34 QIAVVGGQSAGKSSVLENFVGRD 56
++ +VG + GKS++L + D
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNED 24
>d1v3fa_ a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 120
Score = 26.1 bits (57), Expect = 7.4
Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 500 FIGFANVMFSAQQTTDNSNKAGRKLGNQVIRKGWMC---IHNLGIMKGGSRDYWFVLTSE 556
F+G + V + S L + ++ + ++ + ++G ++ G F+ S
Sbjct: 38 FLGSSLVDWLISSNFAASRLEAVTLASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDST 97
Query: 557 NISWFKDEEER 567
+ F + ++
Sbjct: 98 ALYTFAESYKK 108
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 26.6 bits (57), Expect = 9.3
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 35 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLV 71
IA+VG + GKS++L +G+ T R +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRI 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.392
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,889,153
Number of extensions: 140823
Number of successful extensions: 542
Number of sequences better than 10.0: 1
Number of HSP's gapped: 532
Number of HSP's successfully gapped: 106
Length of query: 775
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 683
Effective length of database: 1,144,436
Effective search space: 781649788
Effective search space used: 781649788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.4 bits)