BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3396
(128 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|270005291|gb|EFA01739.1| hypothetical protein TcasGA2_TC007335 [Tribolium castaneum]
Length = 235
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/162 (66%), Positives = 112/162 (69%), Gaps = 34/162 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 74 EQLAELEAAFAKSHYPDIYCREELARSTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 133
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHPNTINR-------------QHF-------VILVP 93
V+P CNGAMMRNIYP +RGYQPYPHP INR Q F + V
Sbjct: 134 VLPGCNGAMMRNIYPGAARGYQPYPHPTAINRYPQMTTSSYPGMAQSFSMSHGTNMTTVA 193
Query: 94 G-------MSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
G MS EDEWYNKSLSALRMN++HH NLA PMLQYQT
Sbjct: 194 GMRQDAMSMSAEDEWYNKSLSALRMNTTHHPNLAAPMLQYQT 235
>gi|189236543|ref|XP_975529.2| PREDICTED: similar to homeobox protein [Tribolium castaneum]
Length = 405
Score = 201 bits (511), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 107/171 (62%), Positives = 112/171 (65%), Gaps = 43/171 (25%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 235 EQLAELEAAFAKSHYPDIYCREELARSTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 294
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHPNTINR--QHFVILV---------PG-------- 94
V+P CNGAMMRNIYP +RGYQPYPHP INR Q F+ PG
Sbjct: 295 VLPGCNGAMMRNIYPGAARGYQPYPHPTAINRYPQIFMYFCNFQMTTSSYPGMAQSFSMS 354
Query: 95 -----------------MSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
MS EDEWYNKSLSALRMN++HH NLA PMLQYQT
Sbjct: 355 HGTNMTTVAGMRQDAMSMSAEDEWYNKSLSALRMNTTHHPNLAAPMLQYQT 405
>gi|242010483|ref|XP_002425997.1| Ptx1 homeodomain protein, putative [Pediculus humanus corporis]
gi|212509988|gb|EEB13259.1| Ptx1 homeodomain protein, putative [Pediculus humanus corporis]
Length = 480
Score = 194 bits (494), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 106/164 (64%), Positives = 110/164 (67%), Gaps = 37/164 (22%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKALTP
Sbjct: 318 EQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALTP- 376
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHPNTINR-----QHFVILVPGMST----------- 97
V+PTCNG MMRNIYPT +RGYQPY H N+IN Q PGM+
Sbjct: 377 VLPTCNGTMMRNIYPTGNRGYQPYHHHNSINSINRYPQMAGSSYPGMAQPFSMTHGPTNM 436
Query: 98 -------------EDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
EDEWYNKSLSALRMNSSHH NLA PMLQYQT
Sbjct: 437 SAGMRQEGMSMNPEDEWYNKSLSALRMNSSHHPNLAAPMLQYQT 480
>gi|383850991|ref|XP_003701047.1| PREDICTED: uncharacterized protein LOC100880559 [Megachile
rotundata]
Length = 431
Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/167 (62%), Positives = 109/167 (65%), Gaps = 41/167 (24%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELE+AFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKALTP
Sbjct: 267 EQLAELESAFAKSHYPDIYCREELARSTKLNEARIQVWFQNRRAKYRKQEKQLQKALTP- 325
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHP----NTINR--QHFVILVP-------------- 93
IP C GAMMRNIYP SRGYQPYPHP N INR Q P
Sbjct: 326 -IPACQGAMMRNIYPGASRGYQPYPHPHNSINGINRYPQMGTTSYPSMTQPFSMSHSASN 384
Query: 94 ------------GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKS+SALRMN++HH NLA PMLQYQT
Sbjct: 385 MSAVTGMRQDAMGMSAEDEWYNKSISALRMNTAHHPNLAAPMLQYQT 431
>gi|340723881|ref|XP_003400315.1| PREDICTED: hypothetical protein LOC100649943 [Bombus terrestris]
Length = 460
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/167 (62%), Positives = 109/167 (65%), Gaps = 41/167 (24%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELE+AFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKALTP
Sbjct: 296 EQLAELESAFAKSHYPDIYCREELARSTKLNEARIQVWFQNRRAKYRKQEKQLQKALTP- 354
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHP----NTINR--QHFVILVP-------------- 93
IP C GAMMRNIYP SRGYQPYPHP N INR Q P
Sbjct: 355 -IPACQGAMMRNIYPGASRGYQPYPHPHNSINGINRYPQMSTTSYPSMTQPFSMSHSASN 413
Query: 94 ------------GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKS+SALRMN++HH NLA PMLQYQT
Sbjct: 414 MSAVTGMRQDAMGMSAEDEWYNKSISALRMNTAHHPNLAAPMLQYQT 460
>gi|332022279|gb|EGI62592.1| Homeobox protein prophet of Pit-1 [Acromyrmex echinatior]
Length = 281
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/167 (62%), Positives = 109/167 (65%), Gaps = 41/167 (24%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELE+AFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKALTP
Sbjct: 117 EQLAELESAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALTP- 175
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHP----NTINR--QHFVILVP-------------- 93
IP C GAMMRNIYP SRGYQPYPHP N INR Q P
Sbjct: 176 -IPACQGAMMRNIYPGASRGYQPYPHPHNSINGINRYPQMGTTSYPSMTQPFSMSHSASN 234
Query: 94 ------------GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKS+SALRMN++HH NLA PMLQYQT
Sbjct: 235 MSAVTGMRQDAMGMSAEDEWYNKSISALRMNTAHHPNLAAPMLQYQT 281
>gi|328792935|ref|XP_003251804.1| PREDICTED: hypothetical protein LOC726538 [Apis mellifera]
Length = 377
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/167 (62%), Positives = 109/167 (65%), Gaps = 41/167 (24%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELE+AFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKALTP
Sbjct: 213 EQLAELESAFAKSHYPDIYCREELARSTKLNEARIQVWFQNRRAKYRKQEKQLQKALTP- 271
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHP----NTINR--QHFVILVP-------------- 93
IP C GAMMRNIYP SRGYQPYPHP N INR Q P
Sbjct: 272 -IPACQGAMMRNIYPGASRGYQPYPHPHNSINGINRYPQMGTTSYPSMTQPFSMSHSASN 330
Query: 94 ------------GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKS+SALRMN++HH NLA PMLQYQT
Sbjct: 331 MSAVTGMRQDAMGMSAEDEWYNKSISALRMNTAHHPNLAAPMLQYQT 377
>gi|195398755|ref|XP_002057986.1| GJ15837 [Drosophila virilis]
gi|194150410|gb|EDW66094.1| GJ15837 [Drosophila virilis]
Length = 664
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 106/166 (63%), Positives = 111/166 (66%), Gaps = 39/166 (23%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 500 EQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 559
Query: 54 VIPTCNGAMMRNIYP-TTSRGYQPYPHPNTINR-----------------QHFVILVP-- 93
VIP+CNG MMRNI + SRGYQPYPH NT+NR Q F +
Sbjct: 560 VIPSCNG-MMRNIQGYSVSRGYQPYPHHNTMNRYPQDLFQMGASSYPGMTQPFSMAHSTN 618
Query: 94 -----------GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKSLSALRMNSSHH NL+ PMLQYQT
Sbjct: 619 MGSVGVRQDSMGMSPEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT 664
>gi|157114702|ref|XP_001652379.1| homeobox protein [Aedes aegypti]
gi|108883532|gb|EAT47757.1| AAEL001148-PA [Aedes aegypti]
Length = 236
Score = 191 bits (485), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/166 (64%), Positives = 112/166 (67%), Gaps = 39/166 (23%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 72 EQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 131
Query: 54 VIPTCNGAMMRNIYP-TTSRGYQPYPHPNTINR-----------------QHFVILVP-- 93
VIP+CNG MMRNI + SRGYQPYPHPN+INR Q F +
Sbjct: 132 VIPSCNG-MMRNIQGYSVSRGYQPYPHPNSINRYPQDLFQMSGSSYPGMTQPFSMSHSSG 190
Query: 94 -----------GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKSLSALRMNSSHH NL+ PMLQYQT
Sbjct: 191 MSSVGVRQDSMGMSAEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT 236
>gi|307169524|gb|EFN62166.1| Homeobox protein prophet of Pit-1 [Camponotus floridanus]
Length = 313
Score = 191 bits (485), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 105/167 (62%), Positives = 109/167 (65%), Gaps = 41/167 (24%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELE+AFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKALTP
Sbjct: 149 EQLAELESAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALTP- 207
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHP----NTINR--QHFVILVP-------------- 93
IP C GAMMRNIYP SRGYQPYPHP N INR Q P
Sbjct: 208 -IPACQGAMMRNIYPGASRGYQPYPHPHNSINGINRYPQMGTTSYPSMTQPFSMSHSASN 266
Query: 94 ------------GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKS+SALRMN++HH NLA PMLQYQT
Sbjct: 267 MSAVTGMRQDAMGMSAEDEWYNKSISALRMNTAHHPNLAAPMLQYQT 313
>gi|350426573|ref|XP_003494478.1| PREDICTED: hypothetical protein LOC100744951 [Bombus impatiens]
Length = 391
Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 105/167 (62%), Positives = 109/167 (65%), Gaps = 41/167 (24%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELE+AFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKALTP
Sbjct: 227 EQLAELESAFAKSHYPDIYCREELARSTKLNEARIQVWFQNRRAKYRKQEKQLQKALTP- 285
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHP----NTINR--QHFVILVP-------------- 93
IP C GAMMRNIYP SRGYQPYPHP N INR Q P
Sbjct: 286 -IPACQGAMMRNIYPGASRGYQPYPHPHNSINGINRYPQMSTTSYPSMTQPFSMSHSASN 344
Query: 94 ------------GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKS+SALRMN++HH NLA PMLQYQT
Sbjct: 345 MSAVTGMRQDAMGMSAEDEWYNKSISALRMNTAHHPNLAAPMLQYQT 391
>gi|195133672|ref|XP_002011263.1| GI16434 [Drosophila mojavensis]
gi|193907238|gb|EDW06105.1| GI16434 [Drosophila mojavensis]
Length = 614
Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 106/166 (63%), Positives = 111/166 (66%), Gaps = 39/166 (23%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 450 EQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 509
Query: 54 VIPTCNGAMMRNIYP-TTSRGYQPYPHPNTINR-----------------QHFVIL---- 91
VIP+CNG MMRNI + SRGYQPYPH NT+NR Q F +
Sbjct: 510 VIPSCNG-MMRNIQGYSVSRGYQPYPHHNTMNRYPQDLFQMGASSYPGMTQPFSMAHGTN 568
Query: 92 ---------VPGMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKSLSALRMNSSHH NL+ PMLQYQT
Sbjct: 569 MGSVGVRQDSMGMSPEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT 614
>gi|195163990|ref|XP_002022832.1| GL14778 [Drosophila persimilis]
gi|194104855|gb|EDW26898.1| GL14778 [Drosophila persimilis]
Length = 596
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/166 (63%), Positives = 111/166 (66%), Gaps = 39/166 (23%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 432 EQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 491
Query: 54 VIPTCNGAMMRNIYP-TTSRGYQPYPHPNTINR-----------------QHFVILVP-- 93
VIP+CNG MMRNI + SRGYQPYPH NT+NR Q F +
Sbjct: 492 VIPSCNG-MMRNIQGYSVSRGYQPYPHHNTMNRYPQDLFQMGASSYPGMTQPFSMAHSTN 550
Query: 94 -----------GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKSLSALRMNSSHH NL+ PMLQYQT
Sbjct: 551 MGSVGVRQDSMGMSPEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT 596
>gi|380022576|ref|XP_003695117.1| PREDICTED: uncharacterized protein LOC100867696 [Apis florea]
Length = 418
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/167 (62%), Positives = 109/167 (65%), Gaps = 41/167 (24%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELE+AFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKALTP
Sbjct: 254 EQLAELESAFAKSHYPDIYCREELARSTKLNEARIQVWFQNRRAKYRKQEKQLQKALTP- 312
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHP----NTINR--QHFVILVP-------------- 93
IP C GAMMRNIYP SRGYQPYPHP N INR Q P
Sbjct: 313 -IPACQGAMMRNIYPGASRGYQPYPHPHNSINGINRYPQMGTTSYPSMTQPFSMSHSASN 371
Query: 94 ------------GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKS+SALRMN++HH NLA PMLQYQT
Sbjct: 372 MSAVTGMRQDAMGMSAEDEWYNKSISALRMNTAHHPNLAAPMLQYQT 418
>gi|198471041|ref|XP_002133645.1| GA23014 [Drosophila pseudoobscura pseudoobscura]
gi|198145739|gb|EDY72272.1| GA23014 [Drosophila pseudoobscura pseudoobscura]
Length = 684
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/166 (63%), Positives = 111/166 (66%), Gaps = 39/166 (23%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 520 EQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 579
Query: 54 VIPTCNGAMMRNIYP-TTSRGYQPYPHPNTINR-----------------QHFVILVP-- 93
VIP+CNG MMRNI + SRGYQPYPH NT+NR Q F +
Sbjct: 580 VIPSCNG-MMRNIQGYSVSRGYQPYPHHNTMNRYPQDLFQMGASSYPGMTQPFSMAHSTN 638
Query: 94 -----------GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKSLSALRMNSSHH NL+ PMLQYQT
Sbjct: 639 MGSVGVRQDSMGMSPEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT 684
>gi|195448076|ref|XP_002071499.1| GK25107 [Drosophila willistoni]
gi|194167584|gb|EDW82485.1| GK25107 [Drosophila willistoni]
Length = 638
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/166 (63%), Positives = 111/166 (66%), Gaps = 39/166 (23%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 474 EQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 533
Query: 54 VIPTCNGAMMRNIYP-TTSRGYQPYPHPNTINR-----------------QHFVILVP-- 93
VIP+CNG MMRNI + SRGYQPYPH NT+NR Q F +
Sbjct: 534 VIPSCNG-MMRNIQGYSVSRGYQPYPHHNTMNRYPQDLFQMGASSYPGMTQPFSMAHSTN 592
Query: 94 -----------GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKSLSALRMNSSHH NL+ PMLQYQT
Sbjct: 593 MGSVGVRQDSMGMSPEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT 638
>gi|194762980|ref|XP_001963612.1| GF20486 [Drosophila ananassae]
gi|190629271|gb|EDV44688.1| GF20486 [Drosophila ananassae]
Length = 731
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/166 (63%), Positives = 111/166 (66%), Gaps = 39/166 (23%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 567 EQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 626
Query: 54 VIPTCNGAMMRNIYP-TTSRGYQPYPHPNTINR-----------------QHFVILVP-- 93
VIP+CNG MMRNI + SRGYQPYPH NT+NR Q F +
Sbjct: 627 VIPSCNG-MMRNIQGYSVSRGYQPYPHHNTMNRYPQDLFQMGASSYPGMTQPFSMAHSTN 685
Query: 94 -----------GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKSLSALRMNSSHH NL+ PMLQYQT
Sbjct: 686 MGSVGVRQDSMGMSPEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT 731
>gi|195479766|ref|XP_002101020.1| GE17381 [Drosophila yakuba]
gi|194188544|gb|EDX02128.1| GE17381 [Drosophila yakuba]
Length = 354
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/166 (63%), Positives = 111/166 (66%), Gaps = 39/166 (23%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 190 EQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 249
Query: 54 VIPTCNGAMMRNIYP-TTSRGYQPYPHPNTINR-----------------QHFVILVP-- 93
VIP+CNG MMRNI + SRGYQPYPH NT+NR Q F +
Sbjct: 250 VIPSCNG-MMRNIQGYSVSRGYQPYPHHNTMNRYPQDLFQMGASSYPGMTQPFSMAHSTN 308
Query: 94 -----------GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKSLSALRMNSSHH NL+ PMLQYQT
Sbjct: 309 MGSVGVRQDSMGMSPEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT 354
>gi|328717525|ref|XP_001950483.2| PREDICTED: retinal homeobox protein Rx2-like [Acyrthosiphon pisum]
Length = 300
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/170 (61%), Positives = 110/170 (64%), Gaps = 42/170 (24%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTP- 52
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL P
Sbjct: 131 EQLAELEAAFAKSHYPDIYCREELARSTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPP 190
Query: 53 SVIPTCNGA-MMRNIYPTTSRGYQPYPHPNTINRQH------------------------ 87
S++P CNGA MMRNIYP+ SR YQ YPHPN++NR H
Sbjct: 191 SMLPGCNGAAMMRNIYPSASRTYQAYPHPNSMNRYHPQMSSSYMSTAVMSQPFNVSSHQA 250
Query: 88 --------FVILVP-GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
I P GM E+EWYNKSLSALRMNS HH NL TPMLQYQT
Sbjct: 251 IPTASANQSSITTPAGMMPEEEWYNKSLSALRMNSGHHPNLTTPMLQYQT 300
>gi|321464405|gb|EFX75413.1| hypothetical protein DAPPUDRAFT_323335 [Daphnia pulex]
Length = 237
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/174 (59%), Positives = 114/174 (65%), Gaps = 46/174 (26%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELEAAFAKSHYPDIYCREELA + QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 64 EQLQELEAAFAKSHYPDIYCREELARVTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 123
Query: 54 VIPTCNG-AMMRNIYPTTSRGYQPYPHPNT--INR--QHFVILVP--------------- 93
V+P CNG AMMRNIYPT SRGYQPYPHPNT +NR Q+ L
Sbjct: 124 VLPACNGAAMMRNIYPTASRGYQPYPHPNTFQMNRYPQYLSDLTQMNHSAAAAYTSMAQP 183
Query: 94 -------------------GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
M++EDEWYNKSL+ALRMNS+H +NL TP+LQYQ+
Sbjct: 184 FGVSAHTPPHMPTVRQDSMSMTSEDEWYNKSLTALRMNSAHSANLTTPVLQYQS 237
>gi|221307806|gb|ACM16761.1| RH73981p [Drosophila melanogaster]
Length = 358
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/170 (61%), Positives = 110/170 (64%), Gaps = 43/170 (25%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 190 EQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 249
Query: 54 VIPTCNGAMMRNIYP-TTSRGYQPYPHPNTIN---------------------------- 84
VIP+CNG MMRNI + SRGYQPYPH NT+N
Sbjct: 250 VIPSCNG-MMRNIQGYSVSRGYQPYPHHNTMNRYPQDLFQMGASSYPGMTQPFSMAHSTN 308
Query: 85 ------RQHFVILVPGMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
RQ + GMS EDEWYNKSLSALRMNSSHH +L+ PMLQYQT
Sbjct: 309 MGSVGVRQDSMGEFHGMSPEDEWYNKSLSALRMNSSHHPDLSAPMLQYQT 358
>gi|269784967|ref|NP_001161635.1| prophet of pit-like transcription factor [Saccoglossus kowalevskii]
gi|268054275|gb|ACY92624.1| prophet of pit-like transcription factor [Saccoglossus kowalevskii]
gi|268054379|gb|ACY92676.1| unc-42-like transcription factor [Saccoglossus kowalevskii]
Length = 262
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/163 (61%), Positives = 111/163 (68%), Gaps = 38/163 (23%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELEAAFAKSHYPDIYCREELA + QVWFQNRRAKYRKQEKQL K+L+P
Sbjct: 103 EQLQELEAAFAKSHYPDIYCREELARVTKLNEARIQVWFQNRRAKYRKQEKQLAKSLSP- 161
Query: 54 VIPTCNGAMMRNIYPTT-SRGYQPYPHP-NTINRQH------------FVILVP----GM 95
VIPTCNG MMRNIY TT SRGYQ YPH NT++ ++ F + P GM
Sbjct: 162 VIPTCNG-MMRNIYQTTSSRGYQ-YPHNVNTVSPRYPQMQSAYAPVAQFSPMGPTSNMGM 219
Query: 96 -------STEDEWYNKSLSALRMN---SSHHSNLATPMLQYQT 128
S EDEWYNKSLSALRMN SSHH NL+ +LQYQT
Sbjct: 220 TAMRNDVSHEDEWYNKSLSALRMNSTVSSHHPNLSAQVLQYQT 262
>gi|405952582|gb|EKC20377.1| Homeobox protein aristaless-like 4 [Crassostrea gigas]
Length = 255
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/171 (53%), Positives = 105/171 (61%), Gaps = 46/171 (26%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AFAKSHYPDIYCREELA + QVWFQNRRAKYRKQEKQL K+L+P
Sbjct: 86 EQLQELENAFAKSHYPDIYCREELARITKLNEARIQVWFQNRRAKYRKQEKQLAKSLSPV 145
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHP---NTINR--QHFVILVP--------GMST--- 97
+ P C GAMM+NIYPTTSR Y YP P NT++R Q P GMST
Sbjct: 146 MNPAC-GAMMKNIYPTTSRPYGAYPTPPSMNTMSRYPQMNTGYSPVAQFSSMSGMSTSNM 204
Query: 98 ---------------------EDEWYNKSLSALRMNSSHHSNLATPMLQYQ 127
ED+WYNKSL+ALRMN++HH L+ P+LQYQ
Sbjct: 205 ATMPRQVQQFPMTTDYNLDAHEDDWYNKSLTALRMNNTHHG-LSNPVLQYQ 254
>gi|158290921|ref|XP_312452.4| AGAP002487-PA [Anopheles gambiae str. PEST]
gi|157018129|gb|EAA08201.4| AGAP002487-PA [Anopheles gambiae str. PEST]
Length = 503
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/93 (79%), Positives = 77/93 (82%), Gaps = 9/93 (9%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 283 EQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 342
Query: 54 VIPTCNGAMMRNIYP-TTSRGYQPYPHPNTINR 85
VIP+CNG MMRNI + SRGYQPYPHPN+INR
Sbjct: 343 VIPSCNG-MMRNIQGYSVSRGYQPYPHPNSINR 374
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 31/34 (91%)
Query: 95 MSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
M+ EDEWYNKSLSALRMNSSHH NL+ PMLQYQT
Sbjct: 470 MTAEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT 503
>gi|307208998|gb|EFN86198.1| Homeobox protein prophet of Pit-1 [Harpegnathos saltator]
Length = 347
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/96 (77%), Positives = 75/96 (78%), Gaps = 13/96 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELE+AFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKALTP
Sbjct: 117 EQLAELESAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALTP- 175
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHP----NTINR 85
IP C GAMMRNIYP SRGYQPYPHP N INR
Sbjct: 176 -IPACQGAMMRNIYPGASRGYQPYPHPHNSINGINR 210
>gi|28571323|ref|NP_608318.4| CG32532 [Drosophila melanogaster]
gi|22832579|gb|AAF48968.2| CG32532 [Drosophila melanogaster]
Length = 736
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/93 (78%), Positives = 76/93 (81%), Gaps = 9/93 (9%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 520 EQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 579
Query: 54 VIPTCNGAMMRNIYP-TTSRGYQPYPHPNTINR 85
VIP+CNG MMRNI + SRGYQPYPH NT+NR
Sbjct: 580 VIPSCNG-MMRNIQGYSVSRGYQPYPHHNTMNR 611
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/37 (86%), Positives = 33/37 (89%)
Query: 92 VPGMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
V GMS EDEWYNKSLSALRMNSSHH NL+ PMLQYQT
Sbjct: 700 VHGMSPEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT 736
>gi|194892982|ref|XP_001977782.1| GG18050 [Drosophila erecta]
gi|190649431|gb|EDV46709.1| GG18050 [Drosophila erecta]
Length = 769
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/93 (78%), Positives = 76/93 (81%), Gaps = 9/93 (9%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 545 EQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 604
Query: 54 VIPTCNGAMMRNIYP-TTSRGYQPYPHPNTINR 85
VIP+CNG MMRNI + SRGYQPYPH NT+NR
Sbjct: 605 VIPSCNG-MMRNIQGYSVSRGYQPYPHHNTMNR 636
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/34 (88%), Positives = 31/34 (91%)
Query: 95 MSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
MS EDEWYNKSLSALRMNSSHH NL+ PMLQYQT
Sbjct: 736 MSPEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT 769
>gi|195059442|ref|XP_001995638.1| GH17865 [Drosophila grimshawi]
gi|193896424|gb|EDV95290.1| GH17865 [Drosophila grimshawi]
Length = 711
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/93 (78%), Positives = 76/93 (81%), Gaps = 9/93 (9%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL PS
Sbjct: 507 EQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPS 566
Query: 54 VIPTCNGAMMRNIYP-TTSRGYQPYPHPNTINR 85
VIP+CNG MMRNI + SRGYQPYPH NT+NR
Sbjct: 567 VIPSCNG-MMRNIQGYSVSRGYQPYPHHNTMNR 598
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 34/38 (89%)
Query: 91 LVPGMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
+ PGMS EDEWYNKSLSALRMNSSHH NL+ PMLQYQT
Sbjct: 674 IFPGMSPEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT 711
>gi|357621094|gb|EHJ73052.1| hypothetical protein KGM_05078 [Danaus plexippus]
Length = 165
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/92 (78%), Positives = 74/92 (80%), Gaps = 10/92 (10%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELEAAFAKSHYPDIYCREELA QVWFQNRRAKYRKQEKQLQKAL P+
Sbjct: 65 EQLAELEAAFAKSHYPDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEKQLQKALAPA 124
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHPNTINR 85
V+P CNG MMRNI RGYQPYPHPNTINR
Sbjct: 125 VLPGCNG-MMRNI--QGYRGYQPYPHPNTINR 153
>gi|443687177|gb|ELT90234.1| hypothetical protein CAPTEDRAFT_154864 [Capitella teleta]
Length = 335
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 73/91 (80%), Gaps = 9/91 (9%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELEAAFAKSHYPDIY REELA + QVWFQNRRAKYRKQEKQL K+L+P+
Sbjct: 126 EQLQELEAAFAKSHYPDIYVREELARVTKLNEARIQVWFQNRRAKYRKQEKQLAKSLSPA 185
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHPNTIN 84
VIPTCNG MMRNIYP+TSR Y YP N++N
Sbjct: 186 VIPTCNG-MMRNIYPSTSRPYA-YPSHNSVN 214
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 28/31 (90%), Gaps = 1/31 (3%)
Query: 98 EDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
+++WYNKSL+ALRMN++H S L+ PMLQYQT
Sbjct: 306 DEDWYNKSLTALRMNNAHPS-LSNPMLQYQT 335
>gi|170048532|ref|XP_001853190.1| homeobox protein [Culex quinquefasciatus]
gi|167870623|gb|EDS34006.1| homeobox protein [Culex quinquefasciatus]
Length = 232
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 60/84 (71%), Gaps = 4/84 (4%)
Query: 3 LAELEAAFAKSHYPDIYCREELAILFQVWFQNRRAKYRKQEKQLQKALTPSVIPTCNGAM 62
+AELE D E + +VWFQNRRAKYRKQEKQLQKAL PSVIP+CNG M
Sbjct: 1 MAELENEAQSDDDGDDNAHVESNV--RVWFQNRRAKYRKQEKQLQKALAPSVIPSCNG-M 57
Query: 63 MRNIYP-TTSRGYQPYPHPNTINR 85
MRNI + SRGYQPYPHPN+INR
Sbjct: 58 MRNIQGYSVSRGYQPYPHPNSINR 81
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 34/43 (79%)
Query: 86 QHFVILVPGMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
Q + GMS EDEWYNKSLSALRMNSSHH NL+ PMLQYQT
Sbjct: 190 QLAAVSTSGMSAEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT 232
>gi|391333276|ref|XP_003741045.1| PREDICTED: ALX homeobox protein 1-like [Metaseiulus occidentalis]
Length = 266
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 61/80 (76%), Gaps = 12/80 (15%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALT-P 52
EQL ELE+AFAKSHYPDIYCREELA + QVWFQNRRAKYRKQEKQLQ+AL P
Sbjct: 82 EQLQELESAFAKSHYPDIYCREELARITKLNEARIQVWFQNRRAKYRKQEKQLQRALAGP 141
Query: 53 S-VIPTCNGAMMRNIYPTTS 71
S ++P A MR++YPT +
Sbjct: 142 SAMLPA---ACMRSMYPTGA 158
>gi|393908042|gb|EJD74882.1| hypothetical protein LOAG_17870 [Loa loa]
Length = 222
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 68/105 (64%), Gaps = 23/105 (21%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTP- 52
EQLAEL+AAF KSHYPDIY REELA + QVWFQNRRAK+RKQEKQL KAL P
Sbjct: 96 EQLAELDAAFQKSHYPDIYVREELARITKLNEARIQVWFQNRRAKHRKQEKQLSKALVPQ 155
Query: 53 SVIP--TCNGAMMRN-IYPTT----------SRGYQPYP--HPNT 82
+V P + G +MR +YP+T S YQPYP HP T
Sbjct: 156 TVFPSQSAAGQIMRTPMYPSTAAMSARAAADSFWYQPYPVAHPMT 200
>gi|86564116|ref|NP_505519.3| Protein UNC-42, isoform a [Caenorhabditis elegans]
gi|77799281|emb|CAA94780.3| Protein UNC-42, isoform a [Caenorhabditis elegans]
Length = 264
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 76/138 (55%), Gaps = 28/138 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTP- 52
EQL EL+AAF KSHYPDIY REELA + QVWFQNRRAK+RK EKQL KA+ P
Sbjct: 95 EQLQELDAAFQKSHYPDIYVREELARITKLNEARIQVWFQNRRAKHRKHEKQLNKAINPP 154
Query: 53 -SVIPTCNGAMMR-NIYPTT-------SRGYQ-PYPHP-------NTINR--QHFVILVP 93
S + +MR +YP + YQ P P+P N+ +F +
Sbjct: 155 HSFLSNPANTLMRQGMYPAALNRDGFWYQSYQRPMPYPTASPSYSNSFTNPIANFGHSIT 214
Query: 94 GMSTEDEWYNKSLSALRM 111
+DE+Y KSL ALRM
Sbjct: 215 SFQADDEFYQKSL-ALRM 231
>gi|453232439|ref|NP_001263845.1| Protein UNC-42, isoform b [Caenorhabditis elegans]
gi|442535478|emb|CCQ25677.1| Protein UNC-42, isoform b [Caenorhabditis elegans]
Length = 279
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 76/138 (55%), Gaps = 28/138 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTP- 52
EQL EL+AAF KSHYPDIY REELA + QVWFQNRRAK+RK EKQL KA+ P
Sbjct: 110 EQLQELDAAFQKSHYPDIYVREELARITKLNEARIQVWFQNRRAKHRKHEKQLNKAINPP 169
Query: 53 -SVIPTCNGAMMR-NIYPTT-------SRGYQ-PYPHP-------NTINR--QHFVILVP 93
S + +MR +YP + YQ P P+P N+ +F +
Sbjct: 170 HSFLSNPANTLMRQGMYPAALNRDGFWYQSYQRPMPYPTASPSYSNSFTNPIANFGHSIT 229
Query: 94 GMSTEDEWYNKSLSALRM 111
+DE+Y KSL ALRM
Sbjct: 230 SFQADDEFYQKSL-ALRM 246
>gi|358333892|dbj|GAA52349.1| retinal homeobox protein Rx [Clonorchis sinensis]
Length = 1096
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 43/55 (78%), Gaps = 7/55 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQK 48
EQL ELE+AF KSHYPDIYCREELA + QVWFQNRRAKYRKQEKQL K
Sbjct: 391 EQLQELESAFQKSHYPDIYCREELARMTKLNEARIQVWFQNRRAKYRKQEKQLAK 445
>gi|341879343|gb|EGT35278.1| hypothetical protein CAEBREN_07313 [Caenorhabditis brenneri]
Length = 266
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 72/142 (50%), Gaps = 35/142 (24%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL EL+AAF KSHYPDIY REELA + QVWFQNRRAK+RK EKQL K + P
Sbjct: 95 EQLQELDAAFQKSHYPDIYVREELARITKLNEARIQVWFQNRRAKHRKHEKQLNKTINPQ 154
Query: 54 ---VIPTCNGAMMRNIYPTT---SRGY------QPYPHPNT------------INRQHFV 89
+ N M + +Y T G+ +P P+P N H +
Sbjct: 155 HSFLANPANSLMRQGMYSTALNRDGGFWYPSYQRPMPYPTASPSYSNSFTNPIANFGHSI 214
Query: 90 ILVPGMSTEDEWYNKSLSALRM 111
P +DE+Y K L A+RM
Sbjct: 215 ASFPA---DDEFYQKHL-AIRM 232
>gi|308484290|ref|XP_003104345.1| CRE-UNC-42 protein [Caenorhabditis remanei]
gi|308257993|gb|EFP01946.1| CRE-UNC-42 protein [Caenorhabditis remanei]
Length = 267
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 72/141 (51%), Gaps = 34/141 (24%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL EL+AAF KSHYPDIY REELA + QVWFQNRRAK+RK EKQL K + P
Sbjct: 97 EQLQELDAAFQKSHYPDIYVREELARITKLNEARIQVWFQNRRAKHRKHEKQLNKTINPQ 156
Query: 54 ---VIPTCNGAMMRNIYPTT-------SRGYQ-PYPHPNT------------INRQHFVI 90
+ N M + +Y + + YQ P P+P N H +
Sbjct: 157 HSFLANPANTLMRQGMYSSALNRDGFWYQSYQRPMPYPTASPSYSNSFTNPIANFGHSIA 216
Query: 91 LVPGMSTEDEWYNKSLSALRM 111
P +DE+Y K L ALRM
Sbjct: 217 SFPA---DDEFYQKHL-ALRM 233
>gi|268559266|ref|XP_002637624.1| C. briggsae CBR-UNC-42 protein [Caenorhabditis briggsae]
Length = 274
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 73/141 (51%), Gaps = 35/141 (24%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL EL+AAF KSHYPDIY REELA + QVWFQNRRAK+RK EKQL K +TP
Sbjct: 105 EQLQELDAAFQKSHYPDIYVREELARITKLNEARIQVWFQNRRAKHRKHEKQLNK-ITPQ 163
Query: 54 ---VIPTCNGAMMRNIYPTT-------SRGYQ-PYPHPNT------------INRQHFVI 90
+ N M + +Y T + YQ P P+P N H +
Sbjct: 164 HSFLANPANTLMRQGMYSTALNRDGFWYQSYQRPMPYPTASPSYSNSFTNPIANFGHSIA 223
Query: 91 LVPGMSTEDEWYNKSLSALRM 111
P +DE+Y K L ALRM
Sbjct: 224 SFPA---DDEFYQKHL-ALRM 240
>gi|211971019|ref|NP_001130019.1| Prop-1-like homeobox protein [Salmo salar]
gi|157412004|gb|ABV54628.1| Prop-1-like homeobox protein [Salmo salar]
Length = 238
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 79/158 (50%), Gaps = 39/158 (24%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTPS 53
+QL +LE AF ++HYPDIYCREELA L QVWFQNRRAKYR+QE+ QK L +
Sbjct: 71 KQLDQLEMAFGQNHYPDIYCREELARLTKLNEARIQVWFQNRRAKYRRQERASQKLLPMA 130
Query: 54 VIPTCNGAMMRNI-YPTTSRGYQPYPHPNTINRQHFVILVPGMSTE-------------- 98
++P +GA++ ++ +T Q YPH + F ++P
Sbjct: 131 MMPG-HGALLGSMCVQSTGLTRQYYPHSLAHHITRFPSMLPSGGCSHSHHPGSAGQCSCP 189
Query: 99 ------------DEWYNKSLSALRMNSSHHSNLATPML 124
+EWY S LR + SNLATP+
Sbjct: 190 TVPPEPQPPRQHEEWY----SPLRNIGAPPSNLATPVF 223
>gi|327279568|ref|XP_003224528.1| PREDICTED: homeobox protein prophet of Pit-1-like [Anolis
carolinensis]
Length = 230
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 44/65 (67%), Gaps = 7/65 (10%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL +LEAAFAK+HYPDIYCREELA QVWFQNRRAK RKQE+ K+
Sbjct: 81 EQLDQLEAAFAKNHYPDIYCREELARTTKLNEARIQVWFQNRRAKQRKQERAFPKSAATG 140
Query: 54 VIPTC 58
V+ C
Sbjct: 141 VLSVC 145
>gi|195345727|ref|XP_002039420.1| GM22737 [Drosophila sechellia]
gi|194134646|gb|EDW56162.1| GM22737 [Drosophila sechellia]
Length = 319
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 36/43 (83%)
Query: 86 QHFVILVPGMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
QH L PGMS EDEWYNKSLSALRMNSSHH NL+ PMLQYQT
Sbjct: 277 QHHESLSPGMSPEDEWYNKSLSALRMNSSHHPNLSAPMLQYQT 319
>gi|156547635|ref|XP_001603937.1| PREDICTED: retinal homeobox protein Rx-A-like [Nasonia vitripennis]
Length = 306
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF KSHYPD+Y REELAI QVWFQNRRAK+R+QEK L S
Sbjct: 101 QLHELERAFEKSHYPDVYSREELAIKVQLPEVRVQVWFQNRRAKWRRQEKMEAARLGISE 160
Query: 55 IPTCNGAMMRNIYPTTSRGYQPYPHPNTIN 84
N AM P P+ HP +N
Sbjct: 161 YHAAN-AMRSVAGPALGLPGDPWLHPGVLN 189
>gi|432901840|ref|XP_004076973.1| PREDICTED: visual system homeobox 1-like [Oryzias latipes]
Length = 229
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 73/152 (48%), Gaps = 38/152 (25%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTPS 53
+QL +LE AF ++ YPDIYCREELA + QVWFQNRRAK RKQE+ +K L
Sbjct: 73 KQLEQLERAFGQNQYPDIYCREELARITKLNEARIQVWFQNRRAKQRKQERASRKVLRGG 132
Query: 54 VIPTCNGAMMR-NIYPTT-SRGY--QPYP----------------HPNTINRQHF-VILV 92
V+ G + +I P+ SR Y QP P HP ++R +
Sbjct: 133 VVSGPRGLLGGMHIQPSGMSRQYYSQPLPHIPHLSPMLPTGAYSRHPGPVSRCPCPSVPP 192
Query: 93 PGMSTEDEWYNKSLSALRMNSSHHSNLATPML 124
P + D+WY LR NL +PM
Sbjct: 193 PAAAQHDDWYGP----LR------GNLPSPMF 214
>gi|348529742|ref|XP_003452372.1| PREDICTED: paired box protein Pax-7-like [Oreochromis niloticus]
Length = 231
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 73/160 (45%), Gaps = 52/160 (32%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTPS 53
+QL +LE AF ++ YPDIY REELA + QVWFQNRRAK RKQE+ QK L
Sbjct: 73 KQLEQLEVAFGQNQYPDIYYREELARITKLNEARIQVWFQNRRAKQRKQERASQKVLPVG 132
Query: 54 VIPTCNG----------AMMRNIYPTTSRGYQPYPH--------PNTINRQH----FVIL 91
V+P +M R YP QP PH P+ +H
Sbjct: 133 VMPGHRALLGGVHIQPSSMARQYYP------QPLPHIPRLSPMLPSGAYSRHPPPGSQCP 186
Query: 92 VPGMSTE-------DEWYNKSLSALRMNSSHHSNLATPML 124
PG ST+ D+WY +LR SNL +PM
Sbjct: 187 CPGASTQPTSQRQHDDWYG----SLR------SNLTSPMF 216
>gi|410900432|ref|XP_003963700.1| PREDICTED: homeobox protein prophet of Pit-1-like [Takifugu
rubripes]
Length = 228
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 74/152 (48%), Gaps = 44/152 (28%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTPS 53
+QL +LE AF ++ YPDIY REELA + QVWFQNRRAK RKQE+ QK L S
Sbjct: 73 KQLEQLEVAFGQNQYPDIYYREELARVTKLNEARIQVWFQNRRAKQRKQERASQKLLPLS 132
Query: 54 VIPTCNGAMMRNIY---PTTSRGYQPYP------------------HPNTINRQHFVILV 92
V+P + A++ ++ P +R Y P P HP + +
Sbjct: 133 VLP-AHRALLGGVHVQAPGMARQYYPQPLAHLPHLSSMLPSGAYSHHPGVVGQ-----FP 186
Query: 93 PGMSTEDEWYNKSLSALRMNSSHHSNLATPML 124
P ++WY S LR +NLA+P+
Sbjct: 187 PAPRQHEDWY----SPLR------NNLASPVF 208
>gi|390361068|ref|XP_003729834.1| PREDICTED: dorsal root ganglia homeobox protein-like
[Strongylocentrotus purpuratus]
Length = 347
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 19/125 (15%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPS 53
+QL ELE+AFAK+HYPD++ RE+LA+ QVWFQNRRAK+RK E+ Q
Sbjct: 64 QQLEELESAFAKTHYPDVFTREDLALRINLTEARVQVWFQNRRAKWRKAERTKQD----- 118
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHPNTINRQHFVILVPGMSTEDEWYNKSLSALRMNS 113
P+ + + ++S G + + + + PG +ED +KS +
Sbjct: 119 RGPSSTSSPENDDRLSSSEGA-------VGHSREEINMSPGAPSEDARRDKSTVDGDKSD 171
Query: 114 SHHSN 118
SHH N
Sbjct: 172 SHHDN 176
>gi|241036517|ref|XP_002406823.1| homeobox protein, putative [Ixodes scapularis]
gi|215492052|gb|EEC01693.1| homeobox protein, putative [Ixodes scapularis]
Length = 141
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 53/96 (55%), Gaps = 17/96 (17%)
Query: 30 VWFQNRRAKYRKQEKQLQKALT-PSVIP--TCNGAMMRNIYPTTSRG----YQPYPHPNT 82
VWFQNRRAKYRKQEKQLQKAL+ PS +P CNG MMR +Y G Y +PHP
Sbjct: 29 VWFQNRRAKYRKQEKQLQKALSAPSALPPAACNG-MMRGVYGPPRTGAYAAYATHPHP-A 86
Query: 83 INRQHFVILVPGMS--------TEDEWYNKSLSALR 110
+ R G ED+WY + SALR
Sbjct: 87 VARYPTYGTAQGFGPQTAMAGPPEDDWYQRGFSALR 122
>gi|157122935|ref|XP_001659964.1| retinal homeobox protein [Aedes aegypti]
gi|108882964|gb|EAT47189.1| AAEL001689-PA [Aedes aegypti]
Length = 756
Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 50/75 (66%), Gaps = 13/75 (17%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK L+ L+
Sbjct: 408 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSESLRLGLSH 467
Query: 53 -SVIP---TCNGAMM 63
S +P +CNGA +
Sbjct: 468 FSQLPHRLSCNGANL 482
>gi|198419049|ref|XP_002125254.1| PREDICTED: similar to short stature homeobox [Ciona intestinalis]
Length = 325
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 44/69 (63%), Gaps = 8/69 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALT-P 52
EQL ELE F ++HYPD + REE++ QVWFQNRRAK RKQE Q+QK LT
Sbjct: 155 EQLNELERLFEETHYPDAFMREEISSRLKLSEGRVQVWFQNRRAKCRKQESQMQKGLTMG 214
Query: 53 SVIPTCNGA 61
S IP C A
Sbjct: 215 SSIPGCRVA 223
>gi|219918518|emb|CAQ05992.1| retinal homeobox protein Rx [Schmidtea mediterranea]
Length = 272
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 50/90 (55%), Gaps = 15/90 (16%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALT--- 51
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK T
Sbjct: 102 QLHELERAFEKSHYPDVYSREELAMKISLPEVRVQVWFQNRRAKWRRQEKIEAANHTHNL 161
Query: 52 PSVIPTCNGAMMRNIYPTTSRGYQPYPHPN 81
V P ++ ++P+ PYP N
Sbjct: 162 QEVFPNVGKSLTSGLFPSN-----PYPFLN 186
>gi|172355888|ref|NP_001116492.1| paired-like homeobox 2b [Xenopus (Silurana) tropicalis]
gi|171846498|gb|AAI61760.1| phox2b protein [Xenopus (Silurana) tropicalis]
Length = 293
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 57/125 (45%), Gaps = 32/125 (25%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQL-------- 46
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAK 168
Query: 47 --------------QKALTPSVIPTCNGAMMRNIYPTTSRGYQPYP---HPNTINRQHFV 89
+ + S P G N PT S G P P N + ++
Sbjct: 169 NGSSGKKSDSSRDEESKDSKSADPDSTGGPGNNPNPTPSCGGGPSPSGAQGNGVPQEPGK 228
Query: 90 ILVPG 94
+ VPG
Sbjct: 229 VGVPG 233
>gi|377685596|gb|AFB74467.1| RX, partial [Schmidtea polychroa]
Length = 199
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 51/90 (56%), Gaps = 15/90 (16%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS- 53
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK T +
Sbjct: 50 QLHELERAFEKSHYPDVYSREELAMKISLPEVRVQVWFQNRRAKWRRQEKIEAANHTHNL 109
Query: 54 --VIPTCNGAMMRNIYPTTSRGYQPYPHPN 81
V P ++ ++P+ PYP N
Sbjct: 110 QEVFPNVGKSLTSGLFPS-----NPYPFLN 134
>gi|158292555|ref|XP_313972.3| AGAP005096-PA [Anopheles gambiae str. PEST]
gi|157017047|gb|EAA09363.3| AGAP005096-PA [Anopheles gambiae str. PEST]
Length = 898
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 49/75 (65%), Gaps = 13/75 (17%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK L+ L+
Sbjct: 560 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSESLRLGLSH 619
Query: 53 -SVIP---TCNGAMM 63
S +P +CNG +
Sbjct: 620 FSQLPHRLSCNGGNL 634
>gi|219918516|emb|CAQ05991.1| retinal homeobox protein Rx [Dugesia japonica]
Length = 272
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 50/90 (55%), Gaps = 15/90 (16%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALT--- 51
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK T
Sbjct: 102 QLHELERAFEKSHYPDVYSREELAMKISLPEVRVQVWFQNRRAKWRRQEKIEAANHTHNL 161
Query: 52 PSVIPTCNGAMMRNIYPTTSRGYQPYPHPN 81
V P ++ +++P PYP N
Sbjct: 162 QEVFPNVGKSLTSSLFPAN-----PYPFLN 186
>gi|322799622|gb|EFZ20894.1| hypothetical protein SINV_05758 [Solenopsis invicta]
Length = 159
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 35/41 (85%)
Query: 88 FVILVPGMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
F+ V GMS EDEWYNKS+SALRMN++HH NLA PMLQYQT
Sbjct: 119 FLFPVSGMSAEDEWYNKSISALRMNTAHHPNLAAPMLQYQT 159
Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 21/28 (75%), Gaps = 4/28 (14%)
Query: 62 MMRNIYPTTSRGYQPYPHP----NTINR 85
MMRNIYP SRGYQPYPHP N INR
Sbjct: 1 MMRNIYPGASRGYQPYPHPHNSINGINR 28
>gi|18202262|sp|O97039.1|RX_DUGJA RecName: Full=Retinal homeobox protein Rax; AltName: Full=DjRax
gi|4519627|dbj|BAA75673.1| Djrax [Dugesia japonica]
Length = 268
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 50/90 (55%), Gaps = 15/90 (16%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALT--- 51
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK T
Sbjct: 98 QLHELERAFEKSHYPDVYSREELAMKISLPEVRVQVWFQNRRAKWRRQEKIEAANHTHNL 157
Query: 52 PSVIPTCNGAMMRNIYPTTSRGYQPYPHPN 81
V P ++ +++P PYP N
Sbjct: 158 QEVFPNVGKSLTSSLFPAN-----PYPFLN 182
>gi|391345791|ref|XP_003747166.1| PREDICTED: homeobox protein aristaless-like [Metaseiulus
occidentalis]
Length = 317
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 47/89 (52%), Gaps = 26/89 (29%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 65 QLEELEKAFGKTHYPDVFTREELAMRVDLTEARVQVWFQNRRAKWRKQEK---------- 114
Query: 55 IPTCNGAMMRNIYPTTSRGYQPYPHPNTI 83
NG P G+ PY P ++
Sbjct: 115 ---ANG------NPNPGAGFNPYSSPQSL 134
>gi|443707331|gb|ELU02974.1| hypothetical protein CAPTEDRAFT_158069 [Capitella teleta]
Length = 325
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 43/67 (64%), Gaps = 9/67 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE F ++HYPD + REEL+ QVWFQNRRAK RKQE QLQK L
Sbjct: 159 EQLNELERLFDETHYPDAFMREELSQRLALSEARIQVWFQNRRAKCRKQESQLQKGLL-- 216
Query: 54 VIPTCNG 60
+ PT +G
Sbjct: 217 LSPTVDG 223
>gi|28573580|ref|NP_726006.2| retinal homeobox [Drosophila melanogaster]
gi|17380504|sp|Q9W2Q1.2|RX_DROME RecName: Full=Retinal homeobox protein Rx; Short=DRx; Short=DRx1
gi|21392130|gb|AAM48419.1| RE39020p [Drosophila melanogaster]
gi|28380638|gb|AAF46639.3| retinal homeobox [Drosophila melanogaster]
gi|220960168|gb|ACL92620.1| Rx-PA [synthetic construct]
Length = 873
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 539 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 588
>gi|268578085|ref|XP_002644025.1| C. briggsae CBR-ALR-1 protein [Caenorhabditis briggsae]
Length = 360
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 42/68 (61%), Gaps = 9/68 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKA--LTP 52
QL ELE FA++HYPD++ REELA QVWFQNRRAKYRKQE+ P
Sbjct: 130 QLDELEKVFARTHYPDVFTREELATRVQLTEARVQVWFQNRRAKYRKQERSSTHHPYQAP 189
Query: 53 SVIPTCNG 60
IPT NG
Sbjct: 190 LNIPTSNG 197
>gi|195486714|ref|XP_002091622.1| GE12148 [Drosophila yakuba]
gi|194177723|gb|EDW91334.1| GE12148 [Drosophila yakuba]
Length = 906
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 572 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 621
>gi|332017817|gb|EGI58478.1| Homeobox protein ARX [Acromyrmex echinatior]
Length = 248
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 9/64 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKA--LTP 52
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RKQEKQ + A +T
Sbjct: 107 QLEELERAFQKTHYPDVFFREELAVRIQLTEARVQVWFQNRRAKWRKQEKQCKIATHMTS 166
Query: 53 SVIP 56
S +P
Sbjct: 167 SHLP 170
>gi|195346236|ref|XP_002039672.1| GM15784 [Drosophila sechellia]
gi|194135021|gb|EDW56537.1| GM15784 [Drosophila sechellia]
Length = 895
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 561 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 610
>gi|194881725|ref|XP_001974972.1| GG22067 [Drosophila erecta]
gi|190658159|gb|EDV55372.1| GG22067 [Drosophila erecta]
Length = 898
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 564 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 613
>gi|383861924|ref|XP_003706434.1| PREDICTED: retinal homeobox protein Rx-like [Megachile rotundata]
Length = 281
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 44/72 (61%), Gaps = 10/72 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK L S
Sbjct: 102 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKMEAARLGLSE 161
Query: 55 IPTCNGAMMRNI 66
N MRN+
Sbjct: 162 YHAAN---MRNV 170
>gi|2950355|emb|CAA11241.1| homebox protein DRx [Drosophila melanogaster]
Length = 902
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 570 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 619
>gi|195585235|ref|XP_002082395.1| GD11547 [Drosophila simulans]
gi|194194404|gb|EDX07980.1| GD11547 [Drosophila simulans]
Length = 903
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 569 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 618
>gi|259013307|ref|NP_001158375.1| retina and anterior neural fold homeobox [Saccoglossus kowalevskii]
gi|32307771|gb|AAP79282.1| retinal homeobox [Saccoglossus kowalevskii]
Length = 353
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 156 QLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEK 205
>gi|380023560|ref|XP_003695586.1| PREDICTED: retinal homeobox protein Rx-like [Apis florea]
Length = 282
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 102 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 151
>gi|340709854|ref|XP_003393515.1| PREDICTED: retinal homeobox protein Rx-like [Bombus terrestris]
gi|350406119|ref|XP_003487661.1| PREDICTED: retinal homeobox protein Rx-like [Bombus impatiens]
Length = 282
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 102 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 151
>gi|110749931|ref|XP_001119966.1| PREDICTED: retinal homeobox protein Rx [Apis mellifera]
Length = 282
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 102 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 151
>gi|319740964|gb|ADV69001.1| retinal homeobox [Patiria miniata]
Length = 314
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 39/56 (69%), Gaps = 7/56 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKAL 50
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK A+
Sbjct: 226 QLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEKMESSAI 281
>gi|157278545|ref|NP_001098373.1| retinal homeobox protein Rx2 [Oryzias latipes]
gi|17380303|sp|Q9I9A2.1|RX2_ORYLA RecName: Full=Retinal homeobox protein Rx2
gi|7635917|emb|CAB88703.1| Rx2 transcription factor [Oryzias latipes]
Length = 327
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 148 QLHELERAFEKSHYPDVYSREELATKVNLPEVRVQVWFQNRRAKWRRQEK 197
>gi|195029469|ref|XP_001987595.1| GH22006 [Drosophila grimshawi]
gi|193903595|gb|EDW02462.1| GH22006 [Drosophila grimshawi]
Length = 879
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 555 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 604
>gi|195456001|ref|XP_002074959.1| GK23335 [Drosophila willistoni]
gi|194171044|gb|EDW85945.1| GK23335 [Drosophila willistoni]
Length = 937
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 606 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 655
>gi|72044362|ref|XP_782307.1| PREDICTED: uncharacterized protein LOC576952 [Strongylocentrotus
purpuratus]
Length = 528
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 278 QLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEK 327
>gi|340378369|ref|XP_003387700.1| PREDICTED: paired box protein Pax-3-like [Amphimedon queenslandica]
Length = 264
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 7/56 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKAL 50
QL ELEAAFAK+HYPD++ RE+LA+ QVWFQNRRAK+R+ +K Q A+
Sbjct: 86 QLQELEAAFAKTHYPDVFMREDLALRINLTEARVQVWFQNRRAKWRRAQKASQLAM 141
>gi|432856452|ref|XP_004068428.1| PREDICTED: retinal homeobox protein Rx1-like [Oryzias latipes]
Length = 344
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 39/56 (69%), Gaps = 7/56 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKAL 50
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK A+
Sbjct: 154 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKMDASAM 209
>gi|91086979|ref|XP_973468.1| PREDICTED: similar to Retinal homeobox protein Rx (DRx1) (DRx)
[Tribolium castaneum]
gi|270011078|gb|EFA07526.1| retinal homeobox [Tribolium castaneum]
Length = 278
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 121 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 170
>gi|268564155|ref|XP_002639030.1| C. briggsae CBR-CEH-17 protein [Caenorhabditis briggsae]
Length = 234
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPDIY REE+A+ QVWFQNRRAKYRKQEK
Sbjct: 158 QLKELERAFCETHYPDIYTREEIAMRIDLTEARVQVWFQNRRAKYRKQEK 207
>gi|17569327|ref|NP_509860.1| Protein ALR-1 [Caenorhabditis elegans]
gi|3878964|emb|CAA92001.1| Protein ALR-1 [Caenorhabditis elegans]
Length = 362
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 41/68 (60%), Gaps = 9/68 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQL--QKALTP 52
QL ELE FA++HYPD++ REELA QVWFQNRRAKYRKQE+ P
Sbjct: 128 QLDELEKVFARTHYPDVFTREELATRVQLTEARVQVWFQNRRAKYRKQERSSTHHPYQAP 187
Query: 53 SVIPTCNG 60
IP NG
Sbjct: 188 MSIPNSNG 195
>gi|242024058|ref|XP_002432447.1| homeobox protein arx, putative [Pediculus humanus corporis]
gi|212517880|gb|EEB19709.1| homeobox protein arx, putative [Pediculus humanus corporis]
Length = 412
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AFA++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 155 QLEELEKAFARTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 204
>gi|170590608|ref|XP_001900064.1| Retinal homeobox protein Rx3 [Brugia malayi]
gi|158592696|gb|EDP31294.1| Retinal homeobox protein Rx3, putative [Brugia malayi]
Length = 185
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 40/55 (72%), Gaps = 7/55 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
+QL ELEAAF KSHYPD++ REELA+ QVWFQNRRAK+RK E+ QK
Sbjct: 82 QQLNELEAAFRKSHYPDVFAREELAVKINLPEARVQVWFQNRRAKWRKTERDDQK 136
>gi|195153960|ref|XP_002017891.1| GL17060 [Drosophila persimilis]
gi|194113687|gb|EDW35730.1| GL17060 [Drosophila persimilis]
Length = 920
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 571 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 620
>gi|312077230|ref|XP_003141212.1| hypothetical protein LOAG_05627 [Loa loa]
gi|307763628|gb|EFO22862.1| hypothetical protein LOAG_05627 [Loa loa]
Length = 185
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 44/67 (65%), Gaps = 13/67 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPS 53
+QL ELEAAF KSHYPD++ REELA+ QVWFQNRRAK+RK E+ QK
Sbjct: 82 QQLNELEAAFHKSHYPDVFAREELAMKINLPEARVQVWFQNRRAKWRKIERDDQK----- 136
Query: 54 VIPTCNG 60
+ CNG
Sbjct: 137 -LNHCNG 142
>gi|307192281|gb|EFN75568.1| Retinal homeobox protein Rx3 [Harpegnathos saltator]
Length = 282
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 102 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 151
>gi|198458256|ref|XP_001360971.2| GA10035 [Drosophila pseudoobscura pseudoobscura]
gi|198136277|gb|EAL25547.2| GA10035 [Drosophila pseudoobscura pseudoobscura]
Length = 921
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 572 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 621
>gi|307195645|gb|EFN77487.1| Homeobox protein ARX [Harpegnathos saltator]
Length = 271
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 40/55 (72%), Gaps = 7/55 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKA 49
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RKQEKQ + A
Sbjct: 107 QLEELERAFQKTHYPDVFFREELAVRIQLTEARVQVWFQNRRAKWRKQEKQCKIA 161
>gi|197359132|gb|ACH69782.1| retinal homeobox protein 2 [Anabarilius grahami]
Length = 284
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 112 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 161
>gi|91087879|ref|XP_969925.1| PREDICTED: similar to transcription factor protein [Tribolium
castaneum]
gi|270012765|gb|EFA09213.1| munster [Tribolium castaneum]
Length = 220
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 7/64 (10%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RKQEK ++ A ++
Sbjct: 57 QLEELERAFHKTHYPDVFFREELALRIDLTEARVQVWFQNRRAKWRKQEKSVKNAQNINI 116
Query: 55 IPTC 58
C
Sbjct: 117 PSAC 120
>gi|402479293|gb|AFQ55891.1| RAX homeobox protein [Branchiostoma floridae]
Length = 318
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 150 QLHELERAFEKSHYPDVYSREELAMKINLPEVRVQVWFQNRRAKWRRQEK 199
>gi|340726685|ref|XP_003401684.1| PREDICTED: hypothetical protein LOC100649005 [Bombus terrestris]
Length = 314
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 8/68 (11%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK-QLQKALTPS 53
QL ELE AF ++HYPDIY REE+A+ QVWFQNRRAK+RKQE+ QK+ + S
Sbjct: 149 QLKELERAFQETHYPDIYTREEIAMKIDLTEARVQVWFQNRRAKFRKQERLAQQKSTSQS 208
Query: 54 VIPTCNGA 61
I +GA
Sbjct: 209 GIGVDSGA 216
>gi|307175916|gb|EFN65729.1| Homeobox protein ARX [Camponotus floridanus]
Length = 249
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 40/55 (72%), Gaps = 7/55 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKA 49
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RKQEKQ + A
Sbjct: 108 QLEELERAFQKTHYPDVFFREELAVRIQLTEARVQVWFQNRRAKWRKQEKQCKIA 162
>gi|18203021|sp|Q9I9D5.1|RX1_ASTFA RecName: Full=Retinal homeobox protein Rx1
gi|8099680|gb|AAF72201.1|AF264703_1 retinal homeobox protein [Astyanax mexicanus]
Length = 334
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 39/56 (69%), Gaps = 7/56 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKAL 50
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK A+
Sbjct: 153 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKMDASAV 208
>gi|322800741|gb|EFZ21645.1| hypothetical protein SINV_12341 [Solenopsis invicta]
Length = 247
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 40/55 (72%), Gaps = 7/55 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKA 49
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RKQEKQ + A
Sbjct: 105 QLEELERAFQKTHYPDVFFREELAVRIQLTEARVQVWFQNRRAKWRKQEKQCKIA 159
>gi|195119474|ref|XP_002004256.1| GI19710 [Drosophila mojavensis]
gi|193909324|gb|EDW08191.1| GI19710 [Drosophila mojavensis]
Length = 884
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 564 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 613
>gi|195401629|ref|XP_002059415.1| GJ17468 [Drosophila virilis]
gi|194142421|gb|EDW58827.1| GJ17468 [Drosophila virilis]
Length = 881
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 554 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 603
>gi|344030242|ref|NP_001230663.1| retinal homeobox protein Rx [Taeniopygia guttata]
Length = 316
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELAI QVWFQNRRAK+R+QEK
Sbjct: 132 QLHELERAFEKSHYPDVYSREELAIKVNLPEVRVQVWFQNRRAKWRRQEK 181
>gi|301171440|ref|NP_001170932.2| paired-like homeodomain transcription factor prop1 [Danio rerio]
Length = 227
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 7/64 (10%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL LE AF ++HYPDIY REELA + QVWFQNRRAK RKQ++ QK+L S
Sbjct: 66 EQLEHLELAFRQNHYPDIYYREELARVTKLNEARIQVWFQNRRAKQRKQDRITQKSLAVS 125
Query: 54 VIPT 57
++P
Sbjct: 126 MMPV 129
>gi|348504974|ref|XP_003440036.1| PREDICTED: retinal homeobox protein Rx1-like [Oreochromis
niloticus]
Length = 355
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 154 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 203
>gi|348522046|ref|XP_003448537.1| PREDICTED: retinal homeobox protein Rx2-like [Oreochromis
niloticus]
Length = 326
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 146 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 195
>gi|18859337|ref|NP_571301.1| retinal homeobox protein Rx2 [Danio rerio]
gi|18202035|sp|O42357.1|RX2_DANRE RecName: Full=Retinal homeobox protein Rx2
gi|2240028|gb|AAB62326.1| retinal homeobox protein [Danio rerio]
Length = 327
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 146 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 195
>gi|410903484|ref|XP_003965223.1| PREDICTED: retinal homeobox protein Rx3-like [Takifugu rubripes]
Length = 301
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 120 QLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEK 169
>gi|41282110|ref|NP_571300.2| retinal homeobox protein Rx1 [Danio rerio]
gi|38173897|gb|AAH60890.1| Retinal homeobox gene 1 [Danio rerio]
Length = 330
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 148 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 197
>gi|17380298|sp|O42356.2|RX1_DANRE RecName: Full=Retinal homeobox protein Rx1
gi|9903605|gb|AAB62325.2| retinal homeobox protein [Danio rerio]
Length = 330
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 148 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 197
>gi|301614476|ref|XP_002936715.1| PREDICTED: retinal homeobox protein Rx-B [Xenopus (Silurana)
tropicalis]
Length = 326
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 142 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 191
>gi|147904024|ref|NP_001084383.1| paired-like homeobox 2b [Xenopus laevis]
gi|38425329|gb|AAR19766.1| homeodomain protein [Xenopus laevis]
Length = 293
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 50/106 (47%), Gaps = 29/106 (27%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQL-------- 46
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAK 168
Query: 47 --------------QKALTPSVIPTCNGAMMRNIYPTTSRGYQPYP 78
+ + S P G + N PT S G P P
Sbjct: 169 NGSSGKKSDSSRDEESKDSKSADPDSTGGPVNNPNPTPSCGGGPSP 214
>gi|4138292|emb|CAA07775.1| Rx2 protein [Oryzias latipes]
Length = 188
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 21 QLHELERAFEKSHYPDVYSREELATKVNLPEVRVQVWFQNRRAKWRRQEK 70
>gi|348528067|ref|XP_003451540.1| PREDICTED: retinal homeobox protein Rx3-like [Oreochromis
niloticus]
Length = 305
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 122 QLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEK 171
>gi|291398309|ref|XP_002715836.1| PREDICTED: aristaless-like homeobox 3 [Oryctolagus cuniculus]
Length = 343
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 18/90 (20%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ +P
Sbjct: 164 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRSP 223
Query: 53 -------SVIPTCNG--AMMRNIYPTTSRG 73
SV+P +G + ++P+T G
Sbjct: 224 FSAAYDISVLPRTDGHPQLQNTLWPSTGSG 253
>gi|410914461|ref|XP_003970706.1| PREDICTED: paired mesoderm homeobox protein 2B-like [Takifugu
rubripes]
Length = 285
Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|47223097|emb|CAG07184.1| unnamed protein product [Tetraodon nigroviridis]
Length = 184
Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 22 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 71
>gi|51979090|gb|AAU20320.1| retinal homeobox [Platynereis dumerilii]
Length = 304
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 126 QLHELERAFEKSHYPDVYSREELALKINLPEVRVQVWFQNRRAKWRRQEK 175
>gi|432960958|ref|XP_004086512.1| PREDICTED: paired mesoderm homeobox protein 2B-like [Oryzias
latipes]
Length = 285
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|348511737|ref|XP_003443400.1| PREDICTED: paired mesoderm homeobox protein 2B-like [Oreochromis
niloticus]
Length = 285
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|328697098|ref|XP_001944012.2| PREDICTED: retinal homeobox protein Rx-like [Acyrthosiphon pisum]
Length = 290
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 108 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 157
>gi|391341560|ref|XP_003745097.1| PREDICTED: retinal homeobox protein Rx1-like [Metaseiulus
occidentalis]
Length = 245
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 68 QLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEK 117
>gi|148230627|ref|NP_001081689.1| retinal homeobox protein Rx-B [Xenopus laevis]
gi|292495034|sp|O42567.2|RXB_XENLA RecName: Full=Retinal homeobox protein Rx-B; AltName: Full=Retina
and anterior neural fold homeobox protein B; AltName:
Full=Rx2A; Short=Xrx2
gi|114107824|gb|AAI23154.1| Rx2A protein [Xenopus laevis]
Length = 325
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 141 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 190
>gi|2240022|gb|AAB62323.1| retinal homeobox 2A [Xenopus laevis]
Length = 325
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 141 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 190
>gi|47225662|emb|CAG08005.1| unnamed protein product [Tetraodon nigroviridis]
Length = 216
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 20 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 69
>gi|344030214|ref|NP_001230653.1| retinal homeobox protein Rx2 [Gallus gallus]
gi|23451258|gb|AAN32718.1|AF420600_1 homeobox transcription factor RAX1 [Gallus gallus]
Length = 317
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 133 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 182
>gi|62414116|ref|NP_001014818.1| paired mesoderm homeobox protein 2B [Danio rerio]
gi|326673538|ref|XP_003199912.1| PREDICTED: paired mesoderm homeobox protein 2B-like [Danio rerio]
gi|56900854|gb|AAW31722.1| paired-like homeobox 2b [Danio rerio]
gi|190337114|gb|AAI62881.1| Paired-like homeobox 2b [Danio rerio]
gi|190339584|gb|AAI62887.1| Paired-like homeobox 2b [Danio rerio]
Length = 284
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|12746271|gb|AAK07422.1| retinal homeobox transcription factor Rx/rax [Rattus norvegicus]
Length = 333
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 139 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 188
>gi|410921502|ref|XP_003974222.1| PREDICTED: retinal homeobox protein Rx1-like [Takifugu rubripes]
Length = 350
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 154 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 203
>gi|410923991|ref|XP_003975465.1| PREDICTED: LOW QUALITY PROTEIN: retinal homeobox protein Rx2-like
[Takifugu rubripes]
Length = 358
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 179 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 228
>gi|383854434|ref|XP_003702726.1| PREDICTED: uncharacterized protein LOC100883470 [Megachile
rotundata]
Length = 313
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 8/68 (11%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK-QLQKALTPS 53
QL ELE AF ++HYPDIY REE+A+ QVWFQNRRAK+RKQE+ QK+ + S
Sbjct: 149 QLKELERAFQETHYPDIYTREEIAMKIDLTEARVQVWFQNRRAKFRKQERLAQQKSSSQS 208
Query: 54 VIPTCNGA 61
I +GA
Sbjct: 209 GIGVDSGA 216
>gi|157278547|ref|NP_001098374.1| Rx3 protein [Oryzias latipes]
gi|15667414|emb|CAC69975.1| Rx3 protein [Oryzias latipes]
Length = 292
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 114 QLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEK 163
>gi|2240024|gb|AAB62324.1| retinal homeobox protein [Mus musculus]
Length = 342
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|148237828|ref|NP_001081687.1| retinal homeobox protein Rx-A [Xenopus laevis]
gi|292495033|sp|O42201.2|RXA_XENLA RecName: Full=Retinal homeobox protein Rx-A; Short=Rx1A;
Short=Xrx1; AltName: Full=Retina and anterior neural
fold homeobox protein A
gi|2232059|gb|AAB62322.1| retinal homeobox 1A [Xenopus laevis]
gi|213625316|gb|AAI70331.1| Retinal homeobox 1A [Xenopus laevis]
gi|213626887|gb|AAI70333.1| Retinal homeobox 1A [Xenopus laevis]
Length = 322
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 141 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 190
>gi|258504656|gb|ACV72956.1| CEH-17 [Caenorhabditis remanei]
gi|258504664|gb|ACV72960.1| CEH-17 [Caenorhabditis remanei]
gi|258504682|gb|ACV72969.1| CEH-17 [Caenorhabditis remanei]
Length = 208
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPDIY REE+A+ QVWFQNRRAKYRKQEK
Sbjct: 151 QLKELERAFCETHYPDIYTREEIAMRIDLTEARVQVWFQNRRAKYRKQEK 200
>gi|18203379|sp|Q9PVX0.1|RX2_CHICK RecName: Full=Retinal homeobox protein Rx2; Short=cRax2
gi|6002395|dbj|BAA84749.1| homeobox protein cRax/Rax2/Rx2 [Gallus gallus]
Length = 317
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 133 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 182
>gi|313212674|emb|CBY36614.1| unnamed protein product [Oikopleura dioica]
Length = 236
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 64 QLHELERAFEKSHYPDVYAREELATKISLPEVRVQVWFQNRRAKWRRQEK 113
>gi|2394304|gb|AAB70267.1| retinal homeobox 1 [Xenopus laevis]
Length = 322
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 141 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 190
>gi|16758430|ref|NP_446130.1| retinal homeobox protein Rx [Rattus norvegicus]
gi|18203127|sp|Q9JLT7.1|RX_RAT RecName: Full=Retinal homeobox protein Rx; AltName: Full=Retina and
anterior neural fold homeobox protein
gi|7384990|gb|AAF61631.1|AF135839_1 homeodomain protein RX [Rattus norvegicus]
gi|12746272|gb|AAK07423.1| retinal homeobox transcription factor Rx/rax [Rattus norvegicus]
gi|149064497|gb|EDM14700.1| retina and anterior neural fold homeobox, isoform CRA_b [Rattus
norvegicus]
Length = 342
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 148 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 197
>gi|47227513|emb|CAG04661.1| unnamed protein product [Tetraodon nigroviridis]
Length = 285
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|47219885|emb|CAF97155.1| unnamed protein product [Tetraodon nigroviridis]
Length = 206
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 26 QLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEK 75
>gi|308497829|ref|XP_003111101.1| CRE-CEH-17 protein [Caenorhabditis remanei]
gi|308240649|gb|EFO84601.1| CRE-CEH-17 protein [Caenorhabditis remanei]
Length = 231
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPDIY REE+A+ QVWFQNRRAKYRKQEK
Sbjct: 158 QLKELERAFCETHYPDIYTREEIAMRIDLTEARVQVWFQNRRAKYRKQEK 207
>gi|258504658|gb|ACV72957.1| CEH-17 [Caenorhabditis remanei]
gi|258504660|gb|ACV72958.1| CEH-17 [Caenorhabditis remanei]
gi|258504662|gb|ACV72959.1| CEH-17 [Caenorhabditis remanei]
gi|258504666|gb|ACV72961.1| CEH-17 [Caenorhabditis remanei]
gi|258504668|gb|ACV72962.1| CEH-17 [Caenorhabditis remanei]
gi|258504670|gb|ACV72963.1| CEH-17 [Caenorhabditis remanei]
gi|258504672|gb|ACV72964.1| CEH-17 [Caenorhabditis remanei]
gi|258504674|gb|ACV72965.1| CEH-17 [Caenorhabditis remanei]
gi|258504676|gb|ACV72966.1| CEH-17 [Caenorhabditis remanei]
gi|258504678|gb|ACV72967.1| CEH-17 [Caenorhabditis remanei]
gi|258504680|gb|ACV72968.1| CEH-17 [Caenorhabditis remanei]
gi|258504684|gb|ACV72970.1| CEH-17 [Caenorhabditis remanei]
gi|258504686|gb|ACV72971.1| CEH-17 [Caenorhabditis remanei]
Length = 208
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPDIY REE+A+ QVWFQNRRAKYRKQEK
Sbjct: 151 QLKELERAFCETHYPDIYTREEIAMRIDLTEARVQVWFQNRRAKYRKQEK 200
>gi|149064496|gb|EDM14699.1| retina and anterior neural fold homeobox, isoform CRA_a [Rattus
norvegicus]
Length = 344
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 150 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 199
>gi|402903228|ref|XP_003914478.1| PREDICTED: retinal homeobox protein Rx [Papio anubis]
Length = 386
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 186 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 235
>gi|311245261|ref|XP_003121760.1| PREDICTED: LOW QUALITY PROTEIN: retinal homeobox protein Rx-like
[Sus scrofa]
Length = 348
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 148 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 197
>gi|89274179|ref|NP_038861.2| retinal homeobox protein Rx [Mus musculus]
gi|341941993|sp|O35602.2|RX_MOUSE RecName: Full=Retinal homeobox protein Rx; AltName: Full=Retina and
anterior neural fold homeobox protein
gi|1932775|gb|AAC53129.1| paired-type homeobox gene [Mus musculus]
gi|19354403|gb|AAH24731.1| Retina and anterior neural fold homeobox [Mus musculus]
gi|37589415|gb|AAH58757.1| Retina and anterior neural fold homeobox [Mus musculus]
gi|148677729|gb|EDL09676.1| retina and anterior neural fold homeobox, isoform CRA_a [Mus
musculus]
Length = 342
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|341883114|gb|EGT39049.1| CBN-CEH-17 protein [Caenorhabditis brenneri]
Length = 231
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPDIY REE+A+ QVWFQNRRAKYRKQEK
Sbjct: 158 QLKELERAFCETHYPDIYTREEIAMRIDLTEARVQVWFQNRRAKYRKQEK 207
>gi|339259158|ref|XP_003369765.1| homeobox protein SMOX-3 [Trichinella spiralis]
gi|316965991|gb|EFV50627.1| homeobox protein SMOX-3 [Trichinella spiralis]
Length = 395
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 41/69 (59%), Gaps = 11/69 (15%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK----QLQKA 49
QL ELE AF +HYPDIY REE+A QVWFQNRRAK+RKQEK + Q
Sbjct: 304 SQLKELEKAFQATHYPDIYTREEIAFKIDLTEARVQVWFQNRRAKFRKQEKSRIIKEQSD 363
Query: 50 LTPSVIPTC 58
L P +C
Sbjct: 364 LNPITKESC 372
>gi|391340589|ref|XP_003744622.1| PREDICTED: retinal homeobox protein Rx3-like [Metaseiulus
occidentalis]
Length = 301
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 86 QLEELEKAFSRTHYPDVFTREELAVRVDLTEARVQVWFQNRRAKWRKQEK 135
>gi|195118214|ref|XP_002003635.1| GI21809 [Drosophila mojavensis]
gi|193914210|gb|EDW13077.1| GI21809 [Drosophila mojavensis]
Length = 392
Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 16 QLQELERAFQRTHYPDVFFREELAVRIELTEARVQVWFQNRRAKWRKQEK 65
>gi|449485972|ref|XP_004175263.1| PREDICTED: LOW QUALITY PROTEIN: paired mesoderm homeobox protein
2A, partial [Taeniopygia guttata]
Length = 221
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 45 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 94
>gi|170572557|ref|XP_001892152.1| homeobox protein [Brugia malayi]
gi|158602775|gb|EDP39026.1| homeobox protein, putative [Brugia malayi]
Length = 286
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPDIY RE+LA+ QVWFQNRRAK+RKQEK
Sbjct: 187 QLKELERAFLETHYPDIYTREDLAMRIDLTEARVQVWFQNRRAKFRKQEK 236
>gi|18859339|ref|NP_571302.1| retinal homeobox protein Rx3 [Danio rerio]
gi|18202036|sp|O42358.1|RX3_DANRE RecName: Full=Retinal homeobox protein Rx3
gi|2240030|gb|AAB62327.1| retinal homeobox protein [Danio rerio]
Length = 292
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 117 QLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEK 166
>gi|190337675|gb|AAI63788.1| Rx3 protein [Danio rerio]
gi|190338758|gb|AAI63791.1| Rx3 protein [Danio rerio]
Length = 292
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 117 QLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEK 166
>gi|358418744|ref|XP_003584036.1| PREDICTED: retinal homeobox protein Rx-like [Bos taurus]
Length = 352
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 148 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 197
>gi|74096025|ref|NP_001027683.1| Prx1 protein [Ciona intestinalis]
gi|13444981|emb|CAC34833.1| Ci-Rx protein [Ciona intestinalis]
Length = 826
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF +SHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 568 QLHELERAFERSHYPDVYSREELAGKINLPEVRVQVWFQNRRAKWRRQEK 617
>gi|340724400|ref|XP_003400570.1| PREDICTED: hypothetical protein LOC100651262 [Bombus terrestris]
gi|350397686|ref|XP_003484956.1| PREDICTED: hypothetical protein LOC100748675 [Bombus impatiens]
Length = 251
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 39/53 (73%), Gaps = 7/53 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQ 47
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RKQEKQ +
Sbjct: 105 QLEELERAFQKTHYPDVFFREELALRIQLTEARVQVWFQNRRAKWRKQEKQCK 157
>gi|345484335|ref|XP_001599456.2| PREDICTED: paired mesoderm homeobox protein 2-like [Nasonia
vitripennis]
Length = 250
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 39/53 (73%), Gaps = 7/53 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQ 47
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RKQEKQ +
Sbjct: 107 QLEELERAFQKTHYPDVFFREELALRIQLTEARVQVWFQNRRAKWRKQEKQCK 159
>gi|148677730|gb|EDL09677.1| retina and anterior neural fold homeobox, isoform CRA_b [Mus
musculus]
Length = 379
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 184 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 233
>gi|395734890|ref|XP_002814749.2| PREDICTED: uncharacterized protein LOC100444086 [Pongo abelii]
Length = 276
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|359079339|ref|XP_003587831.1| PREDICTED: retinal homeobox protein Rx-like [Bos taurus]
Length = 352
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 148 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 197
>gi|242019572|ref|XP_002430234.1| Paired mesoderm homeobox protein 2B, putative [Pediculus humanus
corporis]
gi|212515334|gb|EEB17496.1| Paired mesoderm homeobox protein 2B, putative [Pediculus humanus
corporis]
Length = 168
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 54/99 (54%), Gaps = 24/99 (24%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK-QLQKAL--- 50
QL ELE AF ++HYPDIY REE+A+ QVWFQNRRAK+RKQE+ QKA+
Sbjct: 38 QLKELERAFQETHYPDIYTREEIAMKIDLTEARVQVWFQNRRAKFRKQERLAQQKAVQSS 97
Query: 51 -----------TPSVIPTCNGAMMRNIYPTTSRGYQPYP 78
+P I T +G + I ++S G P
Sbjct: 98 SNNSNNNDSASSPQTIKTESGG--KQIVTSSSNGKDMKP 134
>gi|393897730|gb|EFO12532.2| homeobox protein [Loa loa]
Length = 116
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPDIY RE+LA+ QVWFQNRRAK+RKQEK
Sbjct: 17 QLKELERAFLETHYPDIYTREDLAMRIDLTEARVQVWFQNRRAKFRKQEK 66
>gi|296222754|ref|XP_002757333.1| PREDICTED: retinal homeobox protein Rx [Callithrix jacchus]
Length = 344
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|326934275|ref|XP_003213217.1| PREDICTED: retinal homeobox protein Rx1-like [Meleagris
gallopavo]
Length = 228
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 47 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 96
>gi|110762829|ref|XP_001121339.1| PREDICTED: hypothetical protein LOC725502 [Apis mellifera]
Length = 250
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 39/53 (73%), Gaps = 7/53 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQ 47
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RKQEKQ +
Sbjct: 105 QLEELERAFQKTHYPDVFFREELALRIQLTEARVQVWFQNRRAKWRKQEKQCK 157
>gi|56694806|gb|AAW23065.1| Rx, partial [Oikopleura dioica]
Length = 156
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 59 QLHELERAFEKSHYPDVYAREELATKISLPEVRVQVWFQNRRAKWRRQEK 108
>gi|295389208|gb|ADG03434.1| homeobrain [Nematostella vectensis]
Length = 294
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 12/94 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL +LE AF K+ YPD++ REELA+ QVWFQNRRAK+RK+EK L + +P+
Sbjct: 111 QLHQLERAFEKTQYPDVFTREELALRLDLSEARVQVWFQNRRAKWRKREKALGRE-SPNF 169
Query: 55 IPTCNGAMMRNI---YPTTSRGYQPYPHPNTINR 85
+ +G R + P YQP P P+ ++R
Sbjct: 170 MYPGHGGEYRGVPTELPPLHTAYQPVP-PSFMDR 202
>gi|126116581|ref|NP_038463.2| retinal homeobox protein Rx [Homo sapiens]
gi|296452886|sp|Q9Y2V3.2|RX_HUMAN RecName: Full=Retinal homeobox protein Rx; AltName: Full=Retina and
anterior neural fold homeobox protein
gi|119583497|gb|EAW63093.1| retina and anterior neural fold homeobox [Homo sapiens]
gi|162317600|gb|AAI56202.1| Retina and anterior neural fold homeobox [synthetic construct]
gi|162318774|gb|AAI57123.1| Retina and anterior neural fold homeobox [synthetic construct]
Length = 346
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|114673345|ref|XP_001142510.1| PREDICTED: retinal homeobox protein Rx isoform 2 [Pan troglodytes]
Length = 346
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|426386097|ref|XP_004059529.1| PREDICTED: retinal homeobox protein Rx [Gorilla gorilla gorilla]
Length = 346
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|341903512|gb|EGT59447.1| hypothetical protein CAEBREN_29597 [Caenorhabditis brenneri]
Length = 365
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE FA++HYPD++ REELA QVWFQNRRAKYRKQE+
Sbjct: 128 QLDELEKVFARTHYPDVFTREELATRVQLTEARVQVWFQNRRAKYRKQER 177
>gi|195118282|ref|XP_002003669.1| GI21624 [Drosophila mojavensis]
gi|193914244|gb|EDW13111.1| GI21624 [Drosophila mojavensis]
Length = 397
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 83 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 132
>gi|344030211|ref|NP_989435.2| retinal homeobox protein Rx2 [Gallus gallus]
gi|18203380|sp|Q9PVY0.1|RX1_CHICK RecName: Full=Retinal homeobox protein Rx1; Short=cRax1
gi|23451261|gb|AAN32719.1|AF420601_1 homeobox transcription factor RAX2 [Gallus gallus]
gi|6002393|dbj|BAA84748.1| homeobox protein cRaxL/Rax1/Rx1 [Gallus gallus]
Length = 228
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 47 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 96
>gi|395830733|ref|XP_003788473.1| PREDICTED: retinal homeobox protein Rx [Otolemur garnettii]
Length = 344
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|260829653|ref|XP_002609776.1| hypothetical protein BRAFLDRAFT_219419 [Branchiostoma floridae]
gi|229295138|gb|EEN65786.1| hypothetical protein BRAFLDRAFT_219419 [Branchiostoma floridae]
Length = 184
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 16 QLHELERAFEKSHYPDVYSREELAMKINLPEVRVQVWFQNRRAKWRRQEK 65
>gi|341892467|gb|EGT48402.1| hypothetical protein CAEBREN_31131 [Caenorhabditis brenneri]
Length = 237
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPDIY REE+A+ QVWFQNRRAKYRKQEK
Sbjct: 164 QLKELERAFCETHYPDIYTREEIAMRIDLTEARVQVWFQNRRAKYRKQEK 213
>gi|109122304|ref|XP_001087324.1| PREDICTED: retinal homeobox protein Rx [Macaca mulatta]
Length = 347
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|328706201|ref|XP_003243021.1| PREDICTED: hypothetical protein LOC100571445 [Acyrthosiphon pisum]
Length = 636
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA QVWFQNRRAK+RKQEK
Sbjct: 245 QLDELEKAFGRTHYPDVFTREELASKIGLTEARIQVWFQNRRAKWRKQEK 294
>gi|344030244|ref|NP_001230664.1| retina and anterior neural fold homeobox protein 2 [Taeniopygia
guttata]
Length = 228
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 47 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 96
>gi|449281838|gb|EMC88811.1| Retinal homeobox protein Rx2, partial [Columba livia]
Length = 233
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 49 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 98
>gi|395511533|ref|XP_003760013.1| PREDICTED: LOW QUALITY PROTEIN: retinal homeobox protein Rx
[Sarcophilus harrisii]
Length = 319
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAVKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|312118188|ref|XP_003151537.1| homeobox protein [Loa loa]
Length = 113
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPDIY RE+LA+ QVWFQNRRAK+RKQEK
Sbjct: 17 QLKELERAFLETHYPDIYTREDLAMRIDLTEARVQVWFQNRRAKFRKQEK 66
>gi|383854569|ref|XP_003702793.1| PREDICTED: paired mesoderm homeobox protein 2-like [Megachile
rotundata]
Length = 250
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 39/53 (73%), Gaps = 7/53 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQ 47
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RKQEKQ +
Sbjct: 105 QLEELERAFQKTHYPDVFFREELALRIQLTEARVQVWFQNRRAKWRKQEKQCK 157
>gi|62131821|gb|AAX68745.1| paired-like homeobox 2b [Danio rerio]
Length = 285
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 37/52 (71%), Gaps = 9/52 (17%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA---------ILFQVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA + QVWFQNRRAK+RKQE+
Sbjct: 108 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVQVWFQNRRAKFRKQER 159
>gi|195433002|ref|XP_002064504.1| GK23788 [Drosophila willistoni]
gi|194160589|gb|EDW75490.1| GK23788 [Drosophila willistoni]
Length = 375
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 80 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 129
>gi|403268181|ref|XP_003926160.1| PREDICTED: retinal homeobox protein Rx [Saimiri boliviensis
boliviensis]
Length = 282
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|424034|pir||A46403 transcription factor with prd-type homeo domain and Pro/ Gln-rich
domain al - fruit fly (Drosophila melanogaster)
Length = 384
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 96 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 145
>gi|290262|gb|AAA28840.1| prd-like homeobox protein [Drosophila melanogaster]
Length = 408
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 96 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 145
>gi|195350083|ref|XP_002041571.1| GM16736 [Drosophila sechellia]
gi|195575531|ref|XP_002077631.1| GD23020 [Drosophila simulans]
gi|194123344|gb|EDW45387.1| GM16736 [Drosophila sechellia]
gi|194189640|gb|EDX03216.1| GD23020 [Drosophila simulans]
Length = 410
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 96 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 145
>gi|149639200|ref|XP_001516357.1| PREDICTED: retinal homeobox protein Rx1-like [Ornithorhynchus
anatinus]
Length = 231
Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 49 QLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEK 98
>gi|167234447|ref|NP_001107838.1| aristaless [Tribolium castaneum]
Length = 309
Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 105 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 154
>gi|348523580|ref|XP_003449301.1| PREDICTED: paired mesoderm homeobox protein 2A-like [Oreochromis
niloticus]
Length = 301
Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 103 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 152
>gi|156386935|ref|XP_001634166.1| predicted protein [Nematostella vectensis]
gi|156221246|gb|EDO42103.1| predicted protein [Nematostella vectensis]
Length = 214
Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 12/94 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL +LE AF K+ YPD++ REELA+ QVWFQNRRAK+RK+EK L + +P+
Sbjct: 31 QLHQLERAFEKTQYPDVFTREELALRLDLSEARVQVWFQNRRAKWRKREKALGRE-SPNF 89
Query: 55 IPTCNGAMMRNI---YPTTSRGYQPYPHPNTINR 85
+ +G R + P YQP P P+ ++R
Sbjct: 90 MYPGHGGEYRGVPTELPPLHTAYQPVP-PSFMDR 122
>gi|4566741|gb|AAD23438.1|AF115392_1 retinal homeobox protein RX [Homo sapiens]
Length = 346
Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|327282538|ref|XP_003225999.1| PREDICTED: retinal homeobox protein Rx-B-like [Anolis carolinensis]
Length = 495
Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 311 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 360
>gi|24580629|ref|NP_722629.1| aristaless [Drosophila melanogaster]
gi|60416352|sp|Q06453.2|AL_DROME RecName: Full=Homeobox protein aristaless
gi|7296213|gb|AAF51505.1| aristaless [Drosophila melanogaster]
gi|21464440|gb|AAM52023.1| RE68460p [Drosophila melanogaster]
gi|220942482|gb|ACL83784.1| al-PA [synthetic construct]
gi|220952686|gb|ACL88886.1| al-PA [synthetic construct]
Length = 408
Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 96 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 145
>gi|281339716|gb|EFB15300.1| hypothetical protein PANDA_014123 [Ailuropoda melanoleuca]
Length = 219
Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|441603513|ref|XP_004093153.1| PREDICTED: LOW QUALITY PROTEIN: retinal homeobox protein Rx
[Nomascus leucogenys]
Length = 337
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|395749930|ref|XP_003779033.1| PREDICTED: LOW QUALITY PROTEIN: retinal homeobox protein Rx [Pongo
abelii]
Length = 346
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|444732546|gb|ELW72836.1| Retinal homeobox protein Rx [Tupaia chinensis]
Length = 286
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 146 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 195
>gi|353230507|emb|CCD76678.1| homeobox protein smox-3 [Schistosoma mansoni]
Length = 901
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 39/57 (68%), Gaps = 7/57 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALT 51
QL ELE AF ++HYPDIY RE+LA+ QVWFQNRRAK+RK E+ +Q T
Sbjct: 624 QLKELERAFQETHYPDIYTREDLALRIDLTEARVQVWFQNRRAKFRKTERVIQPDTT 680
>gi|344268964|ref|XP_003406326.1| PREDICTED: retinal homeobox protein Rx-like [Loxodonta africana]
Length = 341
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 143 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 192
>gi|195470248|ref|XP_002087420.1| GE16769 [Drosophila yakuba]
gi|194173521|gb|EDW87132.1| GE16769 [Drosophila yakuba]
Length = 410
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 96 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 145
>gi|158297213|ref|XP_317481.4| AGAP007985-PA [Anopheles gambiae str. PEST]
gi|157015086|gb|EAA12409.4| AGAP007985-PA [Anopheles gambiae str. PEST]
Length = 354
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 90 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 139
>gi|70571090|dbj|BAE06677.1| transcription factor protein [Ciona intestinalis]
Length = 486
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF +SHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 237 QLHELERAFERSHYPDVYSREELAGKINLPEVRVQVWFQNRRAKWRRQEK 286
>gi|345491839|ref|XP_001607712.2| PREDICTED: aristaless-related homeobox protein-like [Nasonia
vitripennis]
Length = 421
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 174 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 223
>gi|195032675|ref|XP_001988540.1| GH11220 [Drosophila grimshawi]
gi|193904540|gb|EDW03407.1| GH11220 [Drosophila grimshawi]
Length = 376
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 81 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 130
>gi|395542879|ref|XP_003773352.1| PREDICTED: paired mesoderm homeobox protein 2B [Sarcophilus
harrisii]
Length = 265
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|325980258|gb|ADZ48388.1| Phox2b [Polyodon spathula]
Length = 248
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 98 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 147
>gi|126331693|ref|XP_001365345.1| PREDICTED: paired mesoderm homeobox protein 2B-like [Monodelphis
domestica]
Length = 314
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|432892481|ref|XP_004075802.1| PREDICTED: paired mesoderm homeobox protein 2A-like [Oryzias
latipes]
Length = 299
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 103 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 152
>gi|118343665|ref|NP_001071654.1| transcription factor protein [Ciona intestinalis]
gi|70568894|dbj|BAE06312.1| transcription factor protein [Ciona intestinalis]
Length = 429
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 18/88 (20%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ--------- 45
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EKQ
Sbjct: 231 QLEELERAFQKTHYPDVFTREELAMRVDLTEARVQVWFQNRRAKWRKREKQGIFNSLGSI 290
Query: 46 --LQKALTPSVIPTCNGAMMRNIYPTTS 71
L + IP ++R+IY ++S
Sbjct: 291 PGLSNVTSFPPIPMFMDPLLRHIYLSSS 318
>gi|402869237|ref|XP_003898672.1| PREDICTED: paired mesoderm homeobox protein 2B [Papio anubis]
Length = 314
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|85719151|dbj|BAE78538.1| aristaless [Harmonia axyridis]
Length = 314
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 107 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 156
>gi|402591778|gb|EJW85707.1| hypothetical protein WUBG_03381 [Wuchereria bancrofti]
Length = 143
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPDIY RE+LA+ QVWFQNRRAK+RKQEK
Sbjct: 44 QLKELERAFLETHYPDIYTREDLAMRIDLTEARVQVWFQNRRAKFRKQEK 93
>gi|195388310|ref|XP_002052823.1| GJ17771 [Drosophila virilis]
gi|194149280|gb|EDW64978.1| GJ17771 [Drosophila virilis]
Length = 381
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 83 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 132
>gi|270210217|gb|ACX30667.2| aristaless 2 [Junonia coenia]
Length = 212
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 23 QLDELEKAFGRTHYPDVFTREELALKIGLTEARIQVWFQNRRAKWRKQEK 72
>gi|170587125|ref|XP_001898329.1| Homeobox domain containing protein [Brugia malayi]
gi|158594235|gb|EDP32820.1| Homeobox domain containing protein [Brugia malayi]
Length = 516
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA---IL----FQVWFQNRRAKYRKQEK 44
QL ELE FA++HYPD++ REELA IL QVWFQNRRAK+RKQE+
Sbjct: 201 QLDELEKVFARTHYPDVFTREELAQRVILTEARVQVWFQNRRAKWRKQER 250
>gi|397514171|ref|XP_003827369.1| PREDICTED: LOW QUALITY PROTEIN: retinal homeobox protein Rx [Pan
paniscus]
Length = 309
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 155 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 204
>gi|313234331|emb|CBY10398.1| unnamed protein product [Oikopleura dioica]
Length = 315
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 143 QLHELERAFEKSHYPDVYAREELATKISLPEVRVQVWFQNRRAKWRRQEK 192
>gi|170045356|ref|XP_001850278.1| paired box protein [Culex quinquefasciatus]
gi|167868438|gb|EDS31821.1| paired box protein [Culex quinquefasciatus]
Length = 479
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 40/56 (71%), Gaps = 7/56 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKAL 50
QL ELE AF ++HYPDIY REE+A+ QVWFQNRRAK+RKQE+ Q+ +
Sbjct: 101 QLKELERAFQETHYPDIYTREEIAMKIDLTEARVQVWFQNRRAKFRKQERIAQQKV 156
>gi|126321609|ref|XP_001366025.1| PREDICTED: retinal homeobox protein Rx-like [Monodelphis domestica]
Length = 350
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAVKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|293341707|ref|XP_001077800.2| PREDICTED: uncharacterized protein LOC364152 [Rattus norvegicus]
Length = 270
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|195147252|ref|XP_002014594.1| GL18872 [Drosophila persimilis]
gi|194106547|gb|EDW28590.1| GL18872 [Drosophila persimilis]
Length = 397
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 94 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 143
>gi|125985361|ref|XP_001356444.1| GA17785 [Drosophila pseudoobscura pseudoobscura]
gi|54644768|gb|EAL33508.1| GA17785 [Drosophila pseudoobscura pseudoobscura]
Length = 395
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 94 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 143
>gi|194209207|ref|XP_001917289.1| PREDICTED: LOW QUALITY PROTEIN: paired mesoderm homeobox protein
2B-like [Equus caballus]
Length = 315
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|301778625|ref|XP_002924730.1| PREDICTED: LOW QUALITY PROTEIN: retinal homeobox protein Rx-like
[Ailuropoda melanoleuca]
Length = 278
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|194853423|ref|XP_001968163.1| GG24714 [Drosophila erecta]
gi|190660030|gb|EDV57222.1| GG24714 [Drosophila erecta]
Length = 416
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 102 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 151
>gi|148224192|ref|NP_001084385.1| paired-like homeobox 2a [Xenopus laevis]
gi|38425325|gb|AAR19764.1| homeodomain protein [Xenopus laevis]
gi|115529155|gb|AAI24892.1| Phox2a protein [Xenopus laevis]
Length = 281
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 103 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 152
>gi|351699331|gb|EHB02250.1| Retinal homeobox protein Rx, partial [Heterocephalus glaber]
Length = 211
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|350425133|ref|XP_003494022.1| PREDICTED: homeobox protein ARX-like [Bombus impatiens]
Length = 385
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 168 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 217
>gi|157129916|ref|XP_001661815.1| paired box protein, putative [Aedes aegypti]
gi|108872028|gb|EAT36253.1| AAEL011647-PA [Aedes aegypti]
Length = 283
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 40/56 (71%), Gaps = 7/56 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKAL 50
QL ELE AF ++HYPDIY REE+A+ QVWFQNRRAK+RKQE+ Q+ +
Sbjct: 35 QLKELERAFQETHYPDIYTREEIAMKIDLTEARVQVWFQNRRAKFRKQERIAQQKV 90
>gi|410909774|ref|XP_003968365.1| PREDICTED: paired mesoderm homeobox protein 2A-like [Takifugu
rubripes]
Length = 299
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 103 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 152
>gi|260796221|ref|XP_002593103.1| Q50 paired-like homeodomain transcription factor [Branchiostoma
floridae]
gi|229278327|gb|EEN49114.1| Q50 paired-like homeodomain transcription factor [Branchiostoma
floridae]
Length = 383
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AFAK+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 190 QLEELERAFAKTHYPDVFTREELAMRVDLTEARVQVWFQNRRAKWRKREK 239
>gi|321456738|gb|EFX67838.1| hypothetical protein DAPPUDRAFT_8649 [Daphnia pulex]
Length = 78
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPDIY REE+AI QVWFQNRRAK+RKQE+
Sbjct: 29 QLKELERAFQETHYPDIYTREEIAIRIDLTEARVQVWFQNRRAKFRKQER 78
>gi|17506283|ref|NP_491393.1| Protein CEH-17 [Caenorhabditis elegans]
gi|8515894|gb|AAF76229.1|AF272397_1 CEH-17 [Caenorhabditis elegans]
gi|351059719|emb|CCD67311.1| Protein CEH-17 [Caenorhabditis elegans]
Length = 237
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE +F ++HYPDIY REE+A+ QVWFQNRRAKYRKQEK
Sbjct: 160 QLKELERSFCETHYPDIYTREEIAMRIDLTEARVQVWFQNRRAKYRKQEK 209
>gi|403300665|ref|XP_003941040.1| PREDICTED: paired mesoderm homeobox protein 2B [Saimiri boliviensis
boliviensis]
Length = 242
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|19168460|dbj|BAB85815.1| aristaless protein [Gryllus bimaculatus]
Length = 391
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELAI QVWFQNRRAK+RKQEK
Sbjct: 111 QLEELEKAFTRTHYPDVFTREELAIKIGLTEARIQVWFQNRRAKWRKQEK 160
>gi|189236734|ref|XP_001815189.1| PREDICTED: similar to paired box protein [Tribolium castaneum]
Length = 268
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 7/54 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
QL ELE AF ++HYPDIY REE+A+ QVWFQNRRAK+RKQE+ Q+
Sbjct: 54 QLKELERAFQETHYPDIYTREEIAMKIDLTEARVQVWFQNRRAKFRKQERLAQQ 107
>gi|46309511|ref|NP_996953.1| paired mesoderm homeobox protein 2A [Danio rerio]
gi|42542899|gb|AAH66448.1| Paired-like homeobox 2a [Danio rerio]
Length = 277
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 100 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 149
>gi|47209983|emb|CAF94204.1| unnamed protein product [Tetraodon nigroviridis]
Length = 296
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 100 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 149
>gi|410977842|ref|XP_003995309.1| PREDICTED: retinal homeobox protein Rx [Felis catus]
Length = 390
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>gi|355784763|gb|EHH65614.1| Transcription factor VSX1, partial [Macaca fascicularis]
Length = 228
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 38 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 94
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 95 MAEYGLYGAMVRHCIP 110
>gi|194766533|ref|XP_001965379.1| GF20646 [Drosophila ananassae]
gi|190617989|gb|EDV33513.1| GF20646 [Drosophila ananassae]
Length = 405
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 93 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 142
>gi|270002762|gb|EEZ99209.1| hypothetical protein TcasGA2_TC000527 [Tribolium castaneum]
Length = 244
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QLA LE F K+HYPD + RE+LA QVWFQNRRAK+R+ E+ L TP+
Sbjct: 76 QLAALEKVFEKTHYPDAFVREDLAAKVNLSEARVQVWFQNRRAKFRRNERSLSLQQTPAT 135
Query: 55 IPTCNGAMMRNIYPTTSRGYQP-YPHPNTI 83
+CN M + P T +P + H N I
Sbjct: 136 KLSCNKPMT-PLAPRTDSVEKPLFSHQNVI 164
>gi|395856674|ref|XP_003800746.1| PREDICTED: uncharacterized protein LOC100945104 isoform 1 [Otolemur
garnettii]
Length = 279
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|356582262|ref|NP_001239128.1| paired-like homeobox 2a [Xenopus (Silurana) tropicalis]
Length = 281
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 103 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 152
>gi|281485130|gb|ADA70355.1| paired-like family homeodomain transcription factor [Heliconius
erato]
Length = 259
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 49 QLDELEKAFGRTHYPDVFTREELALKIGLTEARIQVWFQNRRAKWRKQEK 98
>gi|4633284|gb|AAD26698.1|AF117979_1 homeodomain transcription factor NBPHOX [Homo sapiens]
gi|1841338|dbj|BAA11555.1| NBPhox [Homo sapiens]
gi|5672611|dbj|BAA82670.1| NBPhox [Homo sapiens]
Length = 314
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|340709231|ref|XP_003393215.1| PREDICTED: homeobox protein aristaless-like [Bombus terrestris]
Length = 280
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 50 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 99
>gi|357614288|gb|EHJ69004.1| paired-like family homeodomain transcription factor [Danaus
plexippus]
Length = 341
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 137 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 186
>gi|355755063|gb|EHH58930.1| Retina and anterior neural fold homeobox protein, partial [Macaca
fascicularis]
Length = 117
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 50 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 99
>gi|6679401|ref|NP_032914.1| paired mesoderm homeobox protein 2B [Mus musculus]
gi|12707580|ref|NP_003915.2| paired mesoderm homeobox protein 2B [Homo sapiens]
gi|109074098|ref|XP_001098028.1| PREDICTED: paired mesoderm homeobox protein 2B [Macaca mulatta]
gi|114593819|ref|XP_001149518.1| PREDICTED: paired mesoderm homeobox protein 2B [Pan troglodytes]
gi|332219062|ref|XP_003258677.1| PREDICTED: paired mesoderm homeobox protein 2B [Nomascus
leucogenys]
gi|426344195|ref|XP_004038660.1| PREDICTED: paired mesoderm homeobox protein 2B [Gorilla gorilla
gorilla]
gi|6093753|sp|O35690.1|PHX2B_MOUSE RecName: Full=Paired mesoderm homeobox protein 2B; AltName:
Full=Neuroblastoma Phox; Short=NBPhox; AltName:
Full=PHOX2B homeodomain protein; AltName:
Full=Paired-like homeobox 2B
gi|116242712|sp|Q99453.2|PHX2B_HUMAN RecName: Full=Paired mesoderm homeobox protein 2B; AltName:
Full=Neuroblastoma Phox; Short=NBPhox; AltName:
Full=PHOX2B homeodomain protein; AltName:
Full=Paired-like homeobox 2B
gi|2632151|emb|CAA74833.1| PHOX2b protein [Mus musculus]
gi|5672613|dbj|BAA82671.1| NBPhox [Mus musculus]
gi|16877955|gb|AAH17199.1| Paired-like homeobox 2b [Homo sapiens]
gi|50927508|gb|AAH79610.1| Paired-like homeobox 2b [Mus musculus]
gi|119613395|gb|EAW92989.1| paired-like homeobox 2b [Homo sapiens]
gi|148705829|gb|EDL37776.1| paired-like homeobox 2b [Mus musculus]
Length = 314
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|392353126|ref|XP_344240.4| PREDICTED: paired mesoderm homeobox protein 2B [Rattus norvegicus]
Length = 301
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|71997306|ref|NP_492246.2| Protein CEH-8 [Caenorhabditis elegans]
gi|68056712|sp|Q94398.3|HM08_CAEEL RecName: Full=Homeobox protein ceh-8
gi|60222935|emb|CAB03519.2| Protein CEH-8 [Caenorhabditis elegans]
Length = 276
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ 45
QL LEAAF K+HYPD+Y RE LA + QVWFQNRRAK+R+QEKQ
Sbjct: 71 QLHALEAAFDKTHYPDVYARETLAAKVQLPEVRVQVWFQNRRAKFRRQEKQ 121
>gi|363743158|ref|XP_003642783.1| PREDICTED: homeobox protein aristaless-like 3-like [Gallus gallus]
Length = 261
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 11/86 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ TP
Sbjct: 86 QLEELEKVFQKTHYPDVYAREQLALRTELSEARVQVWFQNRRAKWRKRERYGKIQEVRTP 145
Query: 53 SVIPTCNGA--MMRNIYPTTSRGYQP 76
+ P + + N++P++ P
Sbjct: 146 PLPPQHHTPPQLQNNLWPSSGSPAGP 171
>gi|395856676|ref|XP_003800747.1| PREDICTED: uncharacterized protein LOC100945104 isoform 2 [Otolemur
garnettii]
Length = 281
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 37/52 (71%), Gaps = 9/52 (17%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA---------ILFQVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA + QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQLQVWFQNRRAKFRKQER 160
>gi|355563427|gb|EHH19989.1| Transcription factor VSX1, partial [Macaca mulatta]
Length = 246
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 56 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 112
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 113 MAEYGLYGAMVRHCIP 128
>gi|281485128|gb|ADA70354.1| paired-like family homeodomain transcription factor [Junonia
coenia]
Length = 264
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 58 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 107
>gi|124054606|gb|ABM89504.1| Phox2b [Scyliorhinus canicula]
Length = 230
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 72 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 121
>gi|73974940|ref|XP_852840.1| PREDICTED: paired mesoderm homeobox protein 2B [Canis lupus
familiaris]
Length = 314
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|297475806|ref|XP_002688259.1| PREDICTED: paired mesoderm homeobox protein 2B [Bos taurus]
gi|296486633|tpg|DAA28746.1| TPA: paired-like homeobox 2b-like [Bos taurus]
Length = 315
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|296196663|ref|XP_002745937.1| PREDICTED: paired mesoderm homeobox protein 2B [Callithrix jacchus]
Length = 314
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|115702398|ref|XP_785238.2| PREDICTED: homeobox protein aristaless-like 4-like
[Strongylocentrotus purpuratus]
Length = 353
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL E+E F K+HYPD+YCRE+LA+ QVWFQNRRAK+RK+E+
Sbjct: 117 QLEEMEKVFQKTHYPDVYCREQLALRCDLTEARVQVWFQNRRAKWRKRER 166
>gi|148227630|ref|NP_001089185.1| retina and anterior neural fold homeobox 2 [Xenopus laevis]
gi|86440325|gb|ABC96115.1| retinal homeobox-like transcription factor [Xenopus laevis]
Length = 228
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF +SHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 47 QLHELERAFERSHYPDVYSREELAMKVSLPEVRVQVWFQNRRAKWRRQEK 96
>gi|321453755|gb|EFX64961.1| hypothetical protein DAPPUDRAFT_8210 [Daphnia pulex]
Length = 62
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 13 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 62
>gi|426241769|ref|XP_004014761.1| PREDICTED: visual system homeobox 1 [Ovis aries]
Length = 310
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 120 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 176
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 177 MAEYGLYGAMVRHCIP 192
>gi|291385705|ref|XP_002709324.1| PREDICTED: paired-like homeobox 2b [Oryctolagus cuniculus]
Length = 250
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|213389539|gb|ACJ45838.1| paired-like homeodomain transcription factor prop1 [Danio rerio]
Length = 227
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 7/64 (10%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL LE AF ++HYPDIY REELA + Q WFQNRRAK RKQ++ QK+L S
Sbjct: 66 EQLEHLELAFRQNHYPDIYYREELARVTKLNEARIQAWFQNRRAKQRKQDRITQKSLAVS 125
Query: 54 VIPT 57
++P
Sbjct: 126 MMPV 129
>gi|213623642|gb|AAI70015.1| Retinal homeobox-like transcription factor [Xenopus laevis]
gi|213625185|gb|AAI70013.1| Retinal homeobox-like transcription factor [Xenopus laevis]
Length = 228
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF +SHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 47 QLHELERAFERSHYPDVYSREELAMKVSLPEVRVQVWFQNRRAKWRRQEK 96
>gi|391332291|ref|XP_003740569.1| PREDICTED: uncharacterized protein LOC100905961 [Metaseiulus
occidentalis]
Length = 302
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQK-----A 49
QL ELE AF ++HYPDIY REE+A+ QVWFQNRRAK+RKQE+ Q+
Sbjct: 151 QLRELERAFQETHYPDIYTREEIAMKTDLTEARVQVWFQNRRAKFRKQERLNQQRSSSDG 210
Query: 50 LTPSVIPTCNGAMMRN 65
+ PS I T + N
Sbjct: 211 MPPSPISTTADSTTNN 226
>gi|149035327|gb|EDL90031.1| paired-like homeobox 2b (predicted) [Rattus norvegicus]
Length = 294
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|17137502|ref|NP_477330.1| PvuII-PstI homology 13 [Drosophila melanogaster]
gi|4972032|emb|CAB43867.1| Munster protein [Drosophila melanogaster]
gi|7296182|gb|AAF51474.1| PvuII-PstI homology 13 [Drosophila melanogaster]
gi|94400518|gb|ABF17900.1| FI01102p [Drosophila melanogaster]
Length = 357
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 21 QLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQEK 70
>gi|440891870|gb|ELR45335.1| Paired mesoderm homeobox protein 2B, partial [Bos grunniens mutus]
Length = 212
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|301624284|ref|XP_002941436.1| PREDICTED: retinal homeobox protein Rx1-like [Xenopus (Silurana)
tropicalis]
Length = 227
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF +SHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 47 QLHELERAFERSHYPDVYSREELAMKVSLPEVRVQVWFQNRRAKWRRQEK 96
>gi|357614287|gb|EHJ69003.1| paired-like family homeodomain transcription factor [Danaus
plexippus]
Length = 258
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 49 QLDELEKAFGRTHYPDVFTREELALKIGLTEARIQVWFQNRRAKWRKQEK 98
>gi|334327857|ref|XP_001369519.2| PREDICTED: paired mesoderm homeobox protein 2A-like [Monodelphis
domestica]
Length = 234
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 44 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 93
>gi|312076583|ref|XP_003140926.1| hypothetical protein LOAG_05341 [Loa loa]
Length = 553
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA---IL----FQVWFQNRRAKYRKQEK 44
QL ELE FA++HYPD++ REELA IL QVWFQNRRAK+RKQE+
Sbjct: 221 QLDELEKVFARTHYPDVFTREELAQRVILTEARVQVWFQNRRAKWRKQER 270
>gi|324533481|gb|ADY49311.1| Paired mesoderm homeobox protein 2B [Ascaris suum]
Length = 146
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 9/68 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE AF ++HYPDIY RE++A+ QVWFQNRRAK+RK EK +L++ +
Sbjct: 44 QLKELERAFLETHYPDIYTREDIAMRIDLTEARVQVWFQNRRAKFRKHEKLRKLKEEGSV 103
Query: 53 SVIPTCNG 60
+CNG
Sbjct: 104 EGSESCNG 111
>gi|195575589|ref|XP_002077660.1| GD23036 [Drosophila simulans]
gi|194189669|gb|EDX03245.1| GD23036 [Drosophila simulans]
Length = 355
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 21 QLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQEK 70
>gi|395857545|ref|XP_003801152.1| PREDICTED: visual system homeobox 1 [Otolemur garnettii]
Length = 365
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFGEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAQYGLYGAMVRHCIP 247
>gi|17861402|gb|AAL39178.1| GH01528p [Drosophila melanogaster]
Length = 357
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 21 QLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQEK 70
>gi|301772146|ref|XP_002921493.1| PREDICTED: paired mesoderm homeobox protein 2B-like, partial
[Ailuropoda melanoleuca]
gi|281351965|gb|EFB27549.1| hypothetical protein PANDA_010383 [Ailuropoda melanoleuca]
Length = 193
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|324511371|gb|ADY44739.1| Aristaless-related homeobox protein [Ascaris suum]
Length = 487
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA---IL----FQVWFQNRRAKYRKQEK 44
QL ELE FA++HYPD++ REELA IL QVWFQNRRAK+RKQE+
Sbjct: 184 QLDELEKVFARTHYPDVFTREELAQRVILTEARVQVWFQNRRAKWRKQER 233
>gi|308497871|ref|XP_003111122.1| CRE-CEH-8 protein [Caenorhabditis remanei]
gi|308240670|gb|EFO84622.1| CRE-CEH-8 protein [Caenorhabditis remanei]
Length = 283
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ 45
QL LEAAF KSHYPD+Y RE LA + QVWFQNRRAK+R+QEKQ
Sbjct: 79 QLHALEAAFDKSHYPDVYARETLASKVSLPEVRVQVWFQNRRAKFRRQEKQ 129
>gi|281485132|gb|ADA70356.1| paired-like family homeodomain transcription factor [Heliconius
erato]
Length = 265
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 60 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 109
>gi|341877445|gb|EGT33380.1| CBN-CEH-8 protein [Caenorhabditis brenneri]
Length = 289
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ 45
QL LEAAF K+HYPD+Y RE LA + QVWFQNRRAK+R+QEKQ
Sbjct: 81 QLHALEAAFDKTHYPDVYAREALALKVQLPEVRVQVWFQNRRAKFRRQEKQ 131
>gi|209489273|gb|ACI49051.1| hypothetical protein Cbre_JD08.003 [Caenorhabditis brenneri]
Length = 290
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ 45
QL LEAAF K+HYPD+Y RE LA + QVWFQNRRAK+R+QEKQ
Sbjct: 81 QLHALEAAFDKTHYPDVYAREALALKVQLPEVRVQVWFQNRRAKFRRQEKQ 131
>gi|393909901|gb|EFO23144.2| hypothetical protein LOAG_05341 [Loa loa]
Length = 577
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA---IL----FQVWFQNRRAKYRKQEK 44
QL ELE FA++HYPD++ REELA IL QVWFQNRRAK+RKQE+
Sbjct: 221 QLDELEKVFARTHYPDVFTREELAQRVILTEARVQVWFQNRRAKWRKQER 270
>gi|344250771|gb|EGW06875.1| Visual system homeobox 1 [Cricetulus griseus]
Length = 226
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 35 QLEELEKAFGEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 91
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 92 MAEYGLYGAMVRHCIP 107
>gi|328718058|ref|XP_003246373.1| PREDICTED: retinal homeobox protein Rx-B-like isoform 1
[Acyrthosiphon pisum]
gi|328718060|ref|XP_003246374.1| PREDICTED: retinal homeobox protein Rx-B-like isoform 2
[Acyrthosiphon pisum]
gi|328718062|ref|XP_003246375.1| PREDICTED: retinal homeobox protein Rx-B-like isoform 3
[Acyrthosiphon pisum]
gi|328718064|ref|XP_003246376.1| PREDICTED: retinal homeobox protein Rx-B-like isoform 4
[Acyrthosiphon pisum]
Length = 218
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 38/52 (73%), Gaps = 7/52 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQL 46
QL ELE +F K+HYPD++ REELA+ QVWFQNRRAK+RKQEK L
Sbjct: 86 QLEELENSFQKTHYPDVFFREELAMRIDLTEARVQVWFQNRRAKWRKQEKTL 137
>gi|256070449|ref|XP_002571555.1| homeobox protein smox-3 [Schistosoma mansoni]
Length = 415
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 39/57 (68%), Gaps = 7/57 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALT 51
QL ELE AF ++HYPDIY RE+LA+ QVWFQNRRAK+RK E+ +Q T
Sbjct: 190 QLKELERAFQETHYPDIYTREDLALRIDLTEARVQVWFQNRRAKFRKTERVIQPDTT 246
>gi|156387437|ref|XP_001634210.1| predicted protein [Nematostella vectensis]
gi|156221290|gb|EDO42147.1| predicted protein [Nematostella vectensis]
gi|295389204|gb|ADG03432.1| retinal homeobox [Nematostella vectensis]
Length = 266
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 42/63 (66%), Gaps = 11/63 (17%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKAL 50
QL ELE AF KSHYPD+Y REELA + QVWFQN+RAK+R++EK LQ
Sbjct: 96 QLHELERAFEKSHYPDVYTREELALKISLPEVRVQVWFQNKRAKWRREEKMEMASLQDLP 155
Query: 51 TPS 53
+PS
Sbjct: 156 SPS 158
>gi|194853616|ref|XP_001968194.1| GG24732 [Drosophila erecta]
gi|190660061|gb|EDV57253.1| GG24732 [Drosophila erecta]
Length = 352
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 16 QLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQEK 65
>gi|343469157|gb|AEM43807.1| retina and anterior neural fold homeobox 2b [Xenopus laevis]
Length = 228
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF +SHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 48 QLHELEHAFERSHYPDVYSREELAMKVSLPEVRVQVWFQNRRAKWRRQEK 97
>gi|194667831|ref|XP_001252231.2| PREDICTED: paired mesoderm homeobox protein 2B [Bos taurus]
Length = 314
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|48928118|gb|AAT47737.1| PAX3/NCOA1 fusion protein [Homo sapiens]
Length = 850
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 63/142 (44%), Gaps = 27/142 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQ------ 47
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q
Sbjct: 228 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNH 287
Query: 48 ---KALTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNTINRQHFVILV-----PGMSTED 99
P+ +PT Y + YQP P + + PG +
Sbjct: 288 LIPGGFPPTAMPTL------PTYQLSETSYQPTSIPQGLPELELEAIDNQFGQPGTGDQI 341
Query: 100 EWYNKSLSALRMNSSHHSNLAT 121
W N +++A+ + S +++
Sbjct: 342 PWTNNTVTAINQSKSEDQCISS 363
>gi|410954493|ref|XP_003983899.1| PREDICTED: visual system homeobox 1 [Felis catus]
Length = 364
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|260802230|ref|XP_002595995.1| hypothetical protein BRAFLDRAFT_84069 [Branchiostoma floridae]
gi|229281249|gb|EEN52007.1| hypothetical protein BRAFLDRAFT_84069 [Branchiostoma floridae]
Length = 406
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 137 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 186
>gi|195350151|ref|XP_002041605.1| GM16755 [Drosophila sechellia]
gi|194123378|gb|EDW45421.1| GM16755 [Drosophila sechellia]
Length = 348
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 16 QLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQEK 65
>gi|410957796|ref|XP_003985510.1| PREDICTED: paired mesoderm homeobox protein 2B [Felis catus]
Length = 232
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|308494817|ref|XP_003109597.1| CRE-ALR-1 protein [Caenorhabditis remanei]
gi|308245787|gb|EFO89739.1| CRE-ALR-1 protein [Caenorhabditis remanei]
Length = 362
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 40/68 (58%), Gaps = 9/68 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKA--LTP 52
QL ELE F ++HYPD++ REELA QVWFQNRRAKYRKQE+ P
Sbjct: 128 QLDELEKVFGRTHYPDVFTREELATRVQLTEARVQVWFQNRRAKYRKQERSSTHHPYQAP 187
Query: 53 SVIPTCNG 60
IP NG
Sbjct: 188 LNIPNSNG 195
>gi|195470310|ref|XP_002087451.1| GE16946 [Drosophila yakuba]
gi|194173552|gb|EDW87163.1| GE16946 [Drosophila yakuba]
Length = 353
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 16 QLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQEK 65
>gi|426391199|ref|XP_004061968.1| PREDICTED: visual system homeobox 1 isoform 1 [Gorilla gorilla
gorilla]
Length = 365
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|354475607|ref|XP_003500019.1| PREDICTED: visual system homeobox 1-like [Cricetulus griseus]
Length = 318
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 127 QLEELEKAFGEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 183
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 184 MAEYGLYGAMVRHCIP 199
>gi|6094305|sp|Q26602.1|SMOX3_SCHMA RecName: Full=Homeobox protein SMOX-3
gi|552250|gb|AAA29930.1| paired-like homeodomain protein, partial [Schistosoma mansoni]
Length = 288
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 39/57 (68%), Gaps = 7/57 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALT 51
QL ELE AF ++HYPDIY RE+LA+ QVWFQNRRAK+RK E+ +Q T
Sbjct: 15 QLKELERAFQETHYPDIYTREDLALRIDLTEARVQVWFQNRRAKFRKTERVIQPDTT 71
>gi|444731497|gb|ELW71850.1| Paired mesoderm homeobox protein 2A [Tupaia chinensis]
Length = 317
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 169 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 218
>gi|170033842|ref|XP_001844785.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167874862|gb|EDS38245.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 380
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 44/70 (62%), Gaps = 11/70 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK-QLQKALTPS 53
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RK EK ++ PS
Sbjct: 16 QLQELERAFQRTHYPDVFFREELAVRIELTEARVQVWFQNRRAKWRKNEKGSSREDGEPS 75
Query: 54 VIPTCNGAMM 63
C AMM
Sbjct: 76 ---DCGAAMM 82
>gi|147905324|ref|NP_001088286.1| paired-like homeobox 2b [Xenopus laevis]
gi|54038154|gb|AAH84305.1| LOC495120 protein [Xenopus laevis]
Length = 293
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 49/106 (46%), Gaps = 29/106 (27%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQL-------- 46
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RK E+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKMERAAAAAAAAAK 168
Query: 47 --------------QKALTPSVIPTCNGAMMRNIYPTTSRGYQPYP 78
+ + S P G N PT+S G P P
Sbjct: 169 NGSSGKKSDSSRDEENKDSKSADPDSTGGPGNNPNPTSSCGGGPSP 214
>gi|30841697|gb|AAP34699.1| aristaless-like homeobox protein [Lytechinus variegatus]
Length = 429
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 11/63 (17%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK----QLQKAL 50
QL E+E F ++HYPD+YCRE+LA+ QVWFQNRRAK+RK+E+ Q + L
Sbjct: 128 QLEEMEKVFQRTHYPDVYCREQLALRCDLTEARVQVWFQNRRAKWRKRERFQQFQNMRGL 187
Query: 51 TPS 53
P
Sbjct: 188 GPG 190
>gi|313475156|dbj|BAJ41033.1| aristaless-like transcription factor [Scaphechinus mirabilis]
Length = 463
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL E+E F ++HYPD+YCRE+LA+ QVWFQNRRAK+RK+E+
Sbjct: 147 QLEEMEKVFQRTHYPDVYCREQLALRCDLTEARVQVWFQNRRAKWRKRER 196
>gi|108735476|gb|ABG00197.1| Alx1 [Paracentrotus lividus]
Length = 519
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 11/63 (17%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK----QLQKAL 50
QL E+E F ++HYPD+YCRE+LA+ QVWFQNRRAK+RK+E+ Q + L
Sbjct: 211 QLEEMEKVFQRTHYPDVYCREQLALRCDLTEARVQVWFQNRRAKWRKRERFQQFQNMRGL 270
Query: 51 TPS 53
P
Sbjct: 271 GPG 273
>gi|11056038|ref|NP_055403.2| visual system homeobox 1 isoform a [Homo sapiens]
gi|25009572|sp|Q9NZR4.2|VSX1_HUMAN RecName: Full=Visual system homeobox 1; AltName: Full=Homeodomain
protein RINX; AltName: Full=Retinal inner nuclear layer
homeobox protein; AltName: Full=Transcription factor
VSX1
gi|9802263|gb|AAF99656.1|AF251033_1 homeodomain protein RINX, L1 isoform [Homo sapiens]
gi|11055960|gb|AAF37425.2|AF176797_1 transcription factor VSX1 [Homo sapiens]
gi|112820184|gb|ABI23973.1| visual system homeobox 1 transcript variant 1 [Homo sapiens]
gi|116496989|gb|AAI26229.1| Visual system homeobox 1 [Homo sapiens]
gi|119630509|gb|EAX10104.1| visual system homeobox 1 homolog, CHX10-like (zebrafish), isoform
CRA_a [Homo sapiens]
gi|223460502|gb|AAI36498.1| Visual system homeobox 1 [Homo sapiens]
Length = 365
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|260831720|ref|XP_002610806.1| paired box protein [Branchiostoma floridae]
gi|229296175|gb|EEN66816.1| paired box protein [Branchiostoma floridae]
Length = 464
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 48/90 (53%), Gaps = 21/90 (23%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ+ Q PS
Sbjct: 199 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQQGAQQ---IPS 255
Query: 54 VIPTCNGAMMRNIYPTTSRG---YQPYPHP 80
+P YP + G Y P P P
Sbjct: 256 FMPLG--------YPAPAAGTPTYMPVPEP 277
>gi|9621907|gb|AAF89581.1|AF165886_1 paired-box transcription factor [Branchiostoma floridae]
Length = 464
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 48/90 (53%), Gaps = 21/90 (23%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ+ Q PS
Sbjct: 199 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQQGAQQ---IPS 255
Query: 54 VIPTCNGAMMRNIYPTTSRG---YQPYPHP 80
+P YP + G Y P P P
Sbjct: 256 FMPLG--------YPAPAAGTPTYMPVPEP 277
>gi|328792237|ref|XP_624630.3| PREDICTED: homeobox protein aristaless-like isoform 2 [Apis
mellifera]
Length = 259
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 50 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 99
>gi|258504811|gb|ACV73011.1| ALR-1 [Caenorhabditis remanei]
Length = 316
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 40/68 (58%), Gaps = 9/68 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQL--QKALTP 52
QL ELE F ++HYPD++ REELA QVWFQNRRAKYRKQE+ P
Sbjct: 119 QLDELEKVFGRTHYPDVFTREELATRVQLTEARVQVWFQNRRAKYRKQERSSTHHPYQAP 178
Query: 53 SVIPTCNG 60
IP NG
Sbjct: 179 LNIPNSNG 186
>gi|258504795|gb|ACV73003.1| ALR-1 [Caenorhabditis remanei]
gi|258504797|gb|ACV73004.1| ALR-1 [Caenorhabditis remanei]
gi|258504799|gb|ACV73005.1| ALR-1 [Caenorhabditis remanei]
gi|258504801|gb|ACV73006.1| ALR-1 [Caenorhabditis remanei]
gi|258504803|gb|ACV73007.1| ALR-1 [Caenorhabditis remanei]
gi|258504805|gb|ACV73008.1| ALR-1 [Caenorhabditis remanei]
gi|258504807|gb|ACV73009.1| ALR-1 [Caenorhabditis remanei]
gi|258504809|gb|ACV73010.1| ALR-1 [Caenorhabditis remanei]
gi|258504813|gb|ACV73012.1| ALR-1 [Caenorhabditis remanei]
gi|258504815|gb|ACV73013.1| ALR-1 [Caenorhabditis remanei]
gi|258504817|gb|ACV73014.1| ALR-1 [Caenorhabditis remanei]
gi|258504819|gb|ACV73015.1| ALR-1 [Caenorhabditis remanei]
gi|258504821|gb|ACV73016.1| ALR-1 [Caenorhabditis remanei]
gi|258504823|gb|ACV73017.1| ALR-1 [Caenorhabditis remanei]
gi|258504825|gb|ACV73018.1| ALR-1 [Caenorhabditis remanei]
Length = 316
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 40/68 (58%), Gaps = 9/68 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKA--LTP 52
QL ELE F ++HYPD++ REELA QVWFQNRRAKYRKQE+ P
Sbjct: 119 QLDELEKVFGRTHYPDVFTREELATRVQLTEARVQVWFQNRRAKYRKQERSSTHHPYQAP 178
Query: 53 SVIPTCNG 60
IP NG
Sbjct: 179 LNIPNSNG 186
>gi|383865116|ref|XP_003708021.1| PREDICTED: homeobox protein aristaless-like [Megachile rotundata]
Length = 261
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 51 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 100
>gi|297706526|ref|XP_002830085.1| PREDICTED: visual system homeobox 1 isoform 1 [Pongo abelii]
Length = 365
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|402883434|ref|XP_003905223.1| PREDICTED: visual system homeobox 1 isoform 1 [Papio anubis]
Length = 365
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|313212476|emb|CBY36448.1| unnamed protein product [Oikopleura dioica]
Length = 198
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 43/67 (64%), Gaps = 9/67 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE F ++HYPDIY RE+LA QVWFQNRRAK+RKQEK L K+ PS
Sbjct: 91 QLRELERVFHETHYPDIYTREDLASRIELTEARVQVWFQNRRAKFRKQEK-LSKSKAPSE 149
Query: 55 IPTCNGA 61
T GA
Sbjct: 150 -KTAGGA 155
>gi|328785265|ref|XP_001119852.2| PREDICTED: hypothetical protein LOC724120 [Apis mellifera]
Length = 523
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE+AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 199 QQLEELESAFAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKSER 249
>gi|73989846|ref|XP_850138.1| PREDICTED: visual system homeobox 1 [Canis lupus familiaris]
Length = 363
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 174 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 230
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 231 MAEYGLYGAMVRHCIP 246
>gi|351698231|gb|EHB01150.1| Paired mesoderm homeobox protein 2A, partial [Heterocephalus
glaber]
Length = 70
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 21 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 70
>gi|256017083|dbj|BAH97320.1| aristaless-like homeobox protein [Hemicentrotus pulcherrimus]
Length = 381
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 11/63 (17%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK----QLQKAL 50
QL E+E F ++HYPD+YCRE+LA+ QVWFQNRRAK+RK+E+ Q + L
Sbjct: 108 QLEEMEKVFQRTHYPDVYCREQLALRCDLTEARVQVWFQNRRAKWRKRERFQQFQNMRGL 167
Query: 51 TPS 53
P
Sbjct: 168 GPG 170
>gi|426369665|ref|XP_004051805.1| PREDICTED: paired mesoderm homeobox protein 2A [Gorilla gorilla
gorilla]
Length = 342
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 159 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 208
>gi|395521290|ref|XP_003764751.1| PREDICTED: paired mesoderm homeobox protein 2A [Sarcophilus
harrisii]
Length = 294
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 104 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 153
>gi|297260462|ref|XP_002798304.1| PREDICTED: visual system homeobox 1-like, partial [Macaca mulatta]
Length = 354
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 164 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 220
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 221 MAEYGLYGAMVRHCIP 236
>gi|432114786|gb|ELK36541.1| Visual system homeobox 1 [Myotis davidii]
Length = 221
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 12/77 (15%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPS 53
+QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RKQEK+ + S
Sbjct: 36 QQLEELEKAFSEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKQEKRWGGS---S 92
Query: 54 VIPTCN--GAMMRNIYP 68
++ GAM+R+ P
Sbjct: 93 MMAEYGLYGAMVRHCIP 109
>gi|405976436|gb|EKC40942.1| Retinal homeobox protein Rx2 [Crassostrea gigas]
Length = 274
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+Q+K
Sbjct: 107 QLHELERAFEKSHYPDVYSREELAMKIDLPEVRVQVWFQNRRAKWRRQDK 156
>gi|443690003|gb|ELT92256.1| hypothetical protein CAPTEDRAFT_76161, partial [Capitella teleta]
Length = 102
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 37/48 (77%), Gaps = 5/48 (10%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-----QVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA+ +VWFQNRRAK+R+QEK
Sbjct: 21 QLHELERAFEKSHYPDVYSREELALKISLPEVRVWFQNRRAKWRRQEK 68
>gi|407025359|gb|AFS65546.1| Alx1 [Patiria miniata]
Length = 393
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 40/55 (72%), Gaps = 9/55 (16%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQ 47
QL E+E F K+HYPD+YCRE+LA+ QVWFQNRRAK+RK+E+ QLQ
Sbjct: 119 QLEEMERVFQKTHYPDVYCREQLALRCDLTEARVQVWFQNRRAKWRKRERFQQLQ 173
>gi|402592915|gb|EJW86842.1| hypothetical protein WUBG_02247 [Wuchereria bancrofti]
Length = 184
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 42/67 (62%), Gaps = 13/67 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPS 53
+QL ELEAAF KSHYPD++ REELA QVWFQNRRAK+RK E+ K
Sbjct: 82 QQLNELEAAFRKSHYPDVFAREELATKINLPEARVQVWFQNRRAKWRKTERDDHK----- 136
Query: 54 VIPTCNG 60
+ CNG
Sbjct: 137 -LNHCNG 142
>gi|114681337|ref|XP_001149985.1| PREDICTED: visual system homeobox 1 isoform 2 [Pan troglodytes]
gi|397518460|ref|XP_003829404.1| PREDICTED: visual system homeobox 1 isoform 1 [Pan paniscus]
Length = 365
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|426391201|ref|XP_004061969.1| PREDICTED: visual system homeobox 1 isoform 2 [Gorilla gorilla
gorilla]
Length = 301
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|18202522|sp|Q26657.2|ALX_STRPU RecName: Full=Aristaless homeobox protein; Short=ALX; AltName:
Full=SpPrx-1
gi|2055317|dbj|BAA19774.1| homeobox [Strongylocentrotus purpuratus]
Length = 327
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 41/59 (69%), Gaps = 8/59 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK-QLQKALTP 52
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK LQ L P
Sbjct: 223 QLEELERAFCKTHYPDVFTREELAMRVDLTEARVQVWFQNRRAKWRKREKLGLQPRLHP 281
>gi|291384330|ref|XP_002708569.1| PREDICTED: paired-like homeobox 2a-like [Oryctolagus cuniculus]
Length = 290
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 106 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 155
>gi|195147184|ref|XP_002014560.1| GL18888 [Drosophila persimilis]
gi|198473726|ref|XP_001356418.2| GA15474 [Drosophila pseudoobscura pseudoobscura]
gi|194106513|gb|EDW28556.1| GL18888 [Drosophila persimilis]
gi|198138081|gb|EAL33482.2| GA15474 [Drosophila pseudoobscura pseudoobscura]
Length = 376
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 16 QLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQEK 65
>gi|348555401|ref|XP_003463512.1| PREDICTED: paired mesoderm homeobox protein 2A-like [Cavia
porcellus]
Length = 285
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|148684574|gb|EDL16521.1| paired-like homeobox 2a [Mus musculus]
Length = 263
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 84 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 133
>gi|290789895|pdb|3A02|A Chain A, Crystal Structure Of Aristaless Homeodomain
Length = 60
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 10 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59
>gi|195066771|ref|XP_001996841.1| GH11036 [Drosophila grimshawi]
gi|193891514|gb|EDV90380.1| GH11036 [Drosophila grimshawi]
Length = 372
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 16 QLQELERAFQRTHYPDVFFREELAVRIELTEARVQVWFQNRRAKWRKQEK 65
>gi|296200374|ref|XP_002747576.1| PREDICTED: visual system homeobox 1 [Callithrix jacchus]
Length = 364
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 174 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 230
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 231 MAEYGLYGAMVRHCIP 246
>gi|339253634|ref|XP_003372040.1| retinal homeobox protein Rax [Trichinella spiralis]
gi|316967607|gb|EFV52015.1| retinal homeobox protein Rax [Trichinella spiralis]
Length = 266
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 47/75 (62%), Gaps = 11/75 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK---QLQKALT 51
QL ELE AF KSHYPD+Y RE LA I QVWFQNRRAK+R+QEK + Q+ L
Sbjct: 93 QLHELERAFEKSHYPDVYTREALALKINLPEIRVQVWFQNRRAKWRRQEKMELRCQEEL- 151
Query: 52 PSVIPTCNGAMMRNI 66
P + P G + ++
Sbjct: 152 PPIPPKPAGCLFPSL 166
>gi|195032847|ref|XP_001988573.1| GH11236 [Drosophila grimshawi]
gi|193904573|gb|EDW03440.1| GH11236 [Drosophila grimshawi]
Length = 372
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 16 QLQELERAFQRTHYPDVFFREELAVRIELTEARVQVWFQNRRAKWRKQEK 65
>gi|351695035|gb|EHA97953.1| Paired mesoderm homeobox protein 2B [Heterocephalus glaber]
Length = 300
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>gi|403263094|ref|XP_003923895.1| PREDICTED: paired mesoderm homeobox protein 2A [Saimiri boliviensis
boliviensis]
Length = 247
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|345794077|ref|XP_544533.3| PREDICTED: paired box protein Pax-7 [Canis lupus familiaris]
Length = 636
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 358 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 417
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT +R+ YPTT+
Sbjct: 418 LLPGGFPPTGMPTLPPYQLRDSTYPTTT 445
>gi|402594071|gb|EJW87998.1| hypothetical protein WUBG_01089, partial [Wuchereria bancrofti]
Length = 286
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA---IL----FQVWFQNRRAKYRKQEK 44
QL ELE FA++HYPD++ REELA IL QVWFQNRRAK+RKQE+
Sbjct: 200 QLDELEKVFARTHYPDVFTREELAQRVILTEARVQVWFQNRRAKWRKQER 249
>gi|321473819|gb|EFX84785.1| hypothetical protein DAPPUDRAFT_36325 [Daphnia pulex]
Length = 64
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 15 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 64
>gi|195388380|ref|XP_002052858.1| GJ17788 [Drosophila virilis]
gi|194149315|gb|EDW65013.1| GJ17788 [Drosophila virilis]
Length = 378
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 16 QLQELERAFQRTHYPDVFFREELAVRIELTEARVQVWFQNRRAKWRKQEK 65
>gi|340723862|ref|XP_003400306.1| PREDICTED: hypothetical protein LOC100648767 [Bombus terrestris]
Length = 571
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE+AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 247 QQLEELESAFAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKSER 297
>gi|372266156|ref|NP_001243201.1| visual system homeobox 1 isoform d [Homo sapiens]
gi|112820194|gb|ABI23978.1| visual system homeobox 1 transcript variant 6 [Homo sapiens]
Length = 301
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|332210907|ref|XP_003254555.1| PREDICTED: paired mesoderm homeobox protein 2A [Nomascus
leucogenys]
Length = 287
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 104 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 153
>gi|440808048|gb|AGC24167.1| Phox2 [Lymnaea stagnalis]
Length = 343
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AFA++HYPDIY REE+A+ QVWFQNRRAK+RK E+
Sbjct: 148 QLKELEKAFAETHYPDIYTREEIAMKTDLTEARVQVWFQNRRAKFRKMER 197
>gi|391347837|ref|XP_003748160.1| PREDICTED: retina and anterior neural fold homeobox protein
2-like [Metaseiulus occidentalis]
Length = 184
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
+QL ELE AF+ SHYPD++ REELA+ QVWFQNRRAK+RKQE+
Sbjct: 35 QQLDELEKAFSVSHYPDVFTREELAVKTDLTEARVQVWFQNRRAKWRKQER 85
>gi|380021433|ref|XP_003694570.1| PREDICTED: uncharacterized protein LOC100865467 [Apis florea]
Length = 386
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE+AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 62 QQLEELESAFAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKSER 112
>gi|189234030|ref|XP_967102.2| PREDICTED: similar to CG34367 CG34367-PC [Tribolium castaneum]
Length = 254
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 18/83 (21%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE F ++HYPD + REEL+ QVWFQNRRAK RK E Q+QK
Sbjct: 69 EQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQIQK----- 123
Query: 54 VIPTCNGAMMRNIYPTTSRGYQP 76
G MM N P++S +P
Sbjct: 124 ------GMMMNNHSPSSSTPLEP 140
>gi|47551253|ref|NP_999809.1| aristaless-like homeobox protein [Strongylocentrotus purpuratus]
gi|30841695|gb|AAP34698.1| aristaless-like homeobox protein [Strongylocentrotus purpuratus]
Length = 430
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 11/63 (17%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK----QLQKAL 50
QL E+E F ++HYPD+YCRE+LA+ QVWFQNRRAK+RK+E+ Q + L
Sbjct: 129 QLEEMEKVFQRTHYPDVYCREQLALRCDLTEARVQVWFQNRRAKWRKRERFQQFQNMRGL 188
Query: 51 TPS 53
P
Sbjct: 189 GPG 191
>gi|332027708|gb|EGI67776.1| Short stature homeobox protein [Acromyrmex echinatior]
Length = 307
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 40/62 (64%), Gaps = 7/62 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELE F ++HYPD + REEL+ QVWFQNRRAK RK E QL K + S
Sbjct: 131 EQLAELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQLHKGVAGS 190
Query: 54 VI 55
++
Sbjct: 191 MV 192
>gi|149068721|gb|EDM18273.1| paired-like homeobox 2a [Rattus norvegicus]
Length = 281
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|114639252|ref|XP_001160733.1| PREDICTED: paired mesoderm homeobox protein 2A [Pan troglodytes]
Length = 234
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 51 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 100
>gi|6679399|ref|NP_032913.1| paired mesoderm homeobox protein 2A [Mus musculus]
gi|6093752|sp|Q62066.1|PHX2A_MOUSE RecName: Full=Paired mesoderm homeobox protein 2A; AltName:
Full=Aristaless homeobox protein homolog; AltName:
Full=PHOX2A homeodomain protein; AltName:
Full=Paired-like homeobox 2A
gi|402642|emb|CAA52923.1| Phox2 homeodomain protein [Mus musculus]
gi|225000420|gb|AAI72722.1| Paired-like homeobox 2a [synthetic construct]
gi|225000566|gb|AAI72615.1| Paired-like homeobox 2a [synthetic construct]
Length = 280
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|440808052|gb|AGC24169.1| Phox2 [Sepia officinalis]
Length = 336
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AFA++HYPDIY REE+A+ QVWFQNRRAK+RK E+
Sbjct: 143 QLKELEKAFAETHYPDIYTREEIAMKIDLTEARVQVWFQNRRAKFRKMER 192
>gi|335304550|ref|XP_003359967.1| PREDICTED: visual system homeobox 1-like [Sus scrofa]
Length = 364
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|426391205|ref|XP_004061971.1| PREDICTED: visual system homeobox 1 isoform 4 [Gorilla gorilla
gorilla]
Length = 280
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|290789888|pdb|3A01|B Chain B, Crystal Structure Of Aristaless And Clawless
Homeodomains Bo
gi|290789892|pdb|3A01|F Chain F, Crystal Structure Of Aristaless And Clawless
Homeodomains Bo
Length = 67
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 17 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 66
>gi|213623920|gb|AAI70401.1| Aristaless-related homeobox 2 [Xenopus laevis]
gi|213625348|gb|AAI70403.1| Aristaless-related homeobox 2 [Xenopus laevis]
Length = 528
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 7/60 (11%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK + P +
Sbjct: 304 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHAPGL 363
>gi|195437558|ref|XP_002066707.1| GK24418 [Drosophila willistoni]
gi|194162792|gb|EDW77693.1| GK24418 [Drosophila willistoni]
Length = 364
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 16 QLQELERAFQRTHYPDVFFREELAVRIELTEARVQVWFQNRRAKWRKQEK 65
>gi|194758607|ref|XP_001961553.1| GF15026 [Drosophila ananassae]
gi|190615250|gb|EDV30774.1| GF15026 [Drosophila ananassae]
Length = 325
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 16 QLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQEK 65
>gi|53791211|dbj|BAD54702.1| transcription factor [Rattus norvegicus]
Length = 281
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|410054957|ref|XP_003953745.1| PREDICTED: visual system homeobox 1 [Pan troglodytes]
Length = 301
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|440808050|gb|AGC24168.1| Phox2 [Aplysia californica]
Length = 329
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AFA++HYPDIY REE+A+ QVWFQNRRAK+RK E+
Sbjct: 146 QLKELEKAFAETHYPDIYTREEIAMKTDLTEARVQVWFQNRRAKFRKMER 195
>gi|344296919|ref|XP_003420149.1| PREDICTED: LOW QUALITY PROTEIN: paired mesoderm homeobox protein
2A-like [Loxodonta africana]
Length = 262
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 80 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 129
>gi|156356366|ref|XP_001623896.1| predicted protein [Nematostella vectensis]
gi|156210636|gb|EDO31796.1| predicted protein [Nematostella vectensis]
Length = 93
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AFAK+HYPD++ RE LA+ QVWFQNRRAK+RK+EK
Sbjct: 42 QLEELERAFAKTHYPDVFTREALAVKIDLTEARVQVWFQNRRAKWRKREK 91
>gi|148229045|ref|NP_001086450.1| aristaless related homeobox [Xenopus laevis]
gi|46395020|gb|AAS91656.1| aristaless-related homeobox 2 [Xenopus laevis]
Length = 528
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 7/60 (11%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK + P +
Sbjct: 304 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHAPGL 363
>gi|2583019|gb|AAB82744.1| ARIX homeodomain protein [Homo sapiens]
Length = 284
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|47223503|emb|CAF97990.1| unnamed protein product [Tetraodon nigroviridis]
Length = 610
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 7/60 (11%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK +A P +
Sbjct: 280 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGVQAHPPGL 339
>gi|46249382|ref|NP_005160.2| paired mesoderm homeobox protein 2A [Homo sapiens]
gi|297689630|ref|XP_002822248.1| PREDICTED: paired mesoderm homeobox protein 2A [Pongo abelii]
gi|77416873|sp|O14813.2|PHX2A_HUMAN RecName: Full=Paired mesoderm homeobox protein 2A; AltName:
Full=ARIX1 homeodomain protein; AltName: Full=Aristaless
homeobox protein homolog; AltName: Full=Paired-like
homeobox 2A
gi|27371330|gb|AAH41564.1| Paired-like homeobox 2a [Homo sapiens]
gi|119595262|gb|EAW74856.1| paired-like (aristaless) homeobox 2a [Homo sapiens]
gi|158254722|dbj|BAF83334.1| unnamed protein product [Homo sapiens]
gi|167773113|gb|ABZ91991.1| paired-like homeobox 2a [synthetic construct]
Length = 284
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|383857829|ref|XP_003704406.1| PREDICTED: uncharacterized protein LOC100876054 [Megachile
rotundata]
Length = 503
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE+AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 186 QQLEELESAFAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKSER 236
>gi|402894541|ref|XP_003910413.1| PREDICTED: paired mesoderm homeobox protein 2A [Papio anubis]
Length = 284
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|157817853|ref|NP_001103016.1| visual system homeobox 1 [Rattus norvegicus]
gi|149031121|gb|EDL86148.1| rCG37439 [Rattus norvegicus]
Length = 369
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 179 QLEELEKAFGEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 235
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 236 MAEYGLYGAMVRHCIP 251
>gi|148238213|ref|NP_001079329.1| aristaless related homeobox [Xenopus laevis]
gi|23499459|gb|AAN05413.1| aristaless-related homeobox [Xenopus laevis]
gi|213623330|gb|AAI69601.1| Aristaless related homeobox [Xenopus laevis]
Length = 527
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 303 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 352
>gi|307211957|gb|EFN87869.1| Dorsal root ganglia homeobox protein [Harpegnathos saltator]
Length = 356
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE+AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 33 QQLEELESAFAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKSER 83
>gi|16758738|ref|NP_446321.1| paired mesoderm homeobox protein 2A [Rattus norvegicus]
gi|8134639|sp|Q62782.1|PHX2A_RAT RecName: Full=Paired mesoderm homeobox protein 2A; AltName:
Full=ARIX1 homeodomain protein; AltName: Full=Aristaless
homeobox protein homolog; AltName: Full=Paired-like
homeobox 2A
gi|1002494|gb|AAB04168.1| Arix1 homeodomain protein [Rattus norvegicus]
Length = 281
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|498022|gb|AAA40109.1| oculorhombin [Mus musculus]
Length = 284
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 51/93 (54%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 84 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 143
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IPT + ++ YQP P P T
Sbjct: 144 NTPSHIPTSSSF--------STSVYQPIPQPTT 168
>gi|395752027|ref|XP_003779346.1| PREDICTED: visual system homeobox 1 isoform 2 [Pongo abelii]
Length = 301
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|72084142|ref|XP_791442.1| PREDICTED: aristaless homeobox protein [Strongylocentrotus
purpuratus]
Length = 505
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 41/59 (69%), Gaps = 8/59 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK-QLQKALTP 52
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK LQ L P
Sbjct: 223 QLEELERAFCKTHYPDVFTREELAMRVDLTEARVQVWFQNRRAKWRKREKLGLQPRLHP 281
>gi|395814903|ref|XP_003780977.1| PREDICTED: paired mesoderm homeobox protein 2A [Otolemur garnettii]
Length = 284
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|112820188|gb|ABI23975.1| visual system homeobox 1 transcript variant 3 [Homo sapiens]
Length = 280
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|402883436|ref|XP_003905224.1| PREDICTED: visual system homeobox 1 isoform 2 [Papio anubis]
Length = 280
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|328802691|ref|NP_001179086.1| paired mesoderm homeobox protein 2A [Bos taurus]
gi|296479851|tpg|DAA21966.1| TPA: paired-like homeobox 2a-like [Bos taurus]
Length = 284
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|194759514|ref|XP_001961992.1| GF15246 [Drosophila ananassae]
gi|190615689|gb|EDV31213.1| GF15246 [Drosophila ananassae]
Length = 589
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 62 QQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKAER 112
>gi|397518464|ref|XP_003829406.1| PREDICTED: visual system homeobox 1 isoform 3 [Pan paniscus]
Length = 301
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|402883438|ref|XP_003905225.1| PREDICTED: visual system homeobox 1 isoform 3 [Papio anubis]
Length = 301
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|347964642|ref|XP_001688966.2| AGAP000858-PA [Anopheles gambiae str. PEST]
gi|333469440|gb|EDO63627.2| AGAP000858-PA [Anopheles gambiae str. PEST]
Length = 692
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RK EK
Sbjct: 118 QLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKSEK 167
>gi|328705901|ref|XP_003242937.1| PREDICTED: hypothetical protein LOC100570786 [Acyrthosiphon pisum]
Length = 400
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPDIY REE+A QVWFQNRRAK+RKQE+
Sbjct: 159 QLKELERAFQETHYPDIYTREEIAKHIELTEARVQVWFQNRRAKFRKQER 208
>gi|301783553|ref|XP_002927192.1| PREDICTED: paired mesoderm homeobox protein 2A-like [Ailuropoda
melanoleuca]
Length = 179
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 86 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 135
>gi|397518462|ref|XP_003829405.1| PREDICTED: visual system homeobox 1 isoform 2 [Pan paniscus]
gi|410054951|ref|XP_003953742.1| PREDICTED: visual system homeobox 1 [Pan troglodytes]
Length = 280
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|390351642|ref|XP_797654.3| PREDICTED: uncharacterized protein LOC593067 [Strongylocentrotus
purpuratus]
Length = 392
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPDIY REELA+ QVWFQNRRAK+RK E+
Sbjct: 124 QLKELEKAFNETHYPDIYKREELALKTDLTEARVQVWFQNRRAKFRKTER 173
>gi|301608175|ref|XP_002933659.1| PREDICTED: homeobox protein ARX-like [Xenopus (Silurana)
tropicalis]
Length = 536
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 7/60 (11%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK + P +
Sbjct: 312 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHAPGL 371
>gi|295656520|gb|ADG26723.1| ARX homeobox protein [Platynereis dumerilii]
Length = 283
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 210 QLEELERAFQKTHYPDVFTREELAMRINLTEARVQVWFQNRRAKWRKKEK 259
>gi|115678906|ref|XP_001199761.1| PREDICTED: uncharacterized protein LOC763703 [Strongylocentrotus
purpuratus]
Length = 477
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 41/59 (69%), Gaps = 8/59 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK-QLQKALTP 52
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK LQ L P
Sbjct: 195 QLEELERAFCKTHYPDVFTREELAMRVDLTEARVQVWFQNRRAKWRKREKLGLQPRLHP 253
>gi|410972832|ref|XP_003992860.1| PREDICTED: paired mesoderm homeobox protein 2A, partial [Felis
catus]
Length = 273
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 90 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 139
>gi|284005034|ref|NP_001164681.1| paired-like homeobox 2 [Saccoglossus kowalevskii]
gi|283464071|gb|ADB22619.1| paired-like homeobox 2 [Saccoglossus kowalevskii]
Length = 264
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 37/53 (69%), Gaps = 7/53 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQ 47
QL ELE AF ++HYPDIY REELA+ QVWFQNRRAK+RK +K Q
Sbjct: 120 QLKELERAFQETHYPDIYKREELALKTDLTEARVQVWFQNRRAKFRKGDKATQ 172
>gi|260787658|ref|XP_002588869.1| hypothetical protein BRAFLDRAFT_235895 [Branchiostoma floridae]
gi|229274040|gb|EEN44880.1| hypothetical protein BRAFLDRAFT_235895 [Branchiostoma floridae]
Length = 76
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL +LEA FA++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 20 QLEQLEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKQEK 69
>gi|431898078|gb|ELK06781.1| Paired mesoderm homeobox protein 2A [Pteropus alecto]
Length = 284
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|27807477|ref|NP_777192.1| visual system homeobox 1 [Bos taurus]
gi|25009569|sp|Q9GMA3.1|VSX1_BOVIN RecName: Full=Visual system homeobox 1; AltName: Full=Homeodomain
protein RINX; AltName: Full=Retinal inner nuclear layer
homeobox protein; AltName: Full=Transcription factor
VSX1
gi|9802261|gb|AAF99655.1|AF251032_1 homeodomain protein RINX [Bos taurus]
gi|296481350|tpg|DAA23465.1| TPA: visual system homeobox 1 [Bos taurus]
Length = 365
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>gi|73988195|ref|XP_542326.2| PREDICTED: paired mesoderm homeobox protein 2A [Canis lupus
familiaris]
Length = 284
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|335294428|ref|XP_003357226.1| PREDICTED: paired mesoderm homeobox protein 2A-like [Sus scrofa]
Length = 286
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|149719311|ref|XP_001499207.1| PREDICTED: paired mesoderm homeobox protein 2A-like [Equus
caballus]
Length = 284
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>gi|307177466|gb|EFN66593.1| Short stature homeobox protein 2 [Camponotus floridanus]
Length = 196
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 40/62 (64%), Gaps = 7/62 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELE F ++HYPD + REEL+ QVWFQNRRAK RK E QL K + S
Sbjct: 19 EQLAELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQLHKGVAGS 78
Query: 54 VI 55
++
Sbjct: 79 MV 80
>gi|291230672|ref|XP_002735289.1| PREDICTED: dorsal root ganglia homeobox-like [Saccoglossus
kowalevskii]
Length = 310
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE AFAK+HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 59 QQLEELENAFAKTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKMER 109
>gi|109130220|ref|XP_001091313.1| PREDICTED: homeobox protein ARX [Macaca mulatta]
Length = 562
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 339 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 388
>gi|281340522|gb|EFB16106.1| hypothetical protein PANDA_016951 [Ailuropoda melanoleuca]
Length = 172
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 88 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 137
>gi|154146243|ref|NP_001093644.1| homeobox protein ARX [Rattus norvegicus]
gi|160016491|sp|A6YP92.1|ARX_RAT RecName: Full=Homeobox protein ARX; AltName:
Full=Aristaless-related homeobox
gi|149688998|gb|ABR27821.1| aristaless-related homeobox protein [Rattus norvegicus]
Length = 566
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 343 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 392
>gi|221119371|ref|XP_002160816.1| PREDICTED: homeobox protein aristaless-like isoform 1 [Hydra
magnipapillata]
Length = 239
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 61 QLDELERAFDKTHYPDVFMREELAVRVHLTEARVQVWFQNRRAKWRKREK 110
>gi|432918406|ref|XP_004079609.1| PREDICTED: ALX homeobox protein 1-like [Oryzias latipes]
Length = 326
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 18/90 (20%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A T
Sbjct: 135 QLEELEKVFQKTHYPDVYVREQLAMRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKTH 194
Query: 53 -------SVIPTCNG--AMMRNIYPTTSRG 73
S +P +G + N++P+ + G
Sbjct: 195 FAATYDLSALPRTDGYTQIPNNLWPSPTPG 224
>gi|259013476|ref|NP_001158481.1| dorsal root ganglia homeobox [Saccoglossus kowalevskii]
gi|197734655|gb|ACH73223.1| dorsal root ganglion homeobox protein [Saccoglossus kowalevskii]
Length = 328
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE+AF ++HYPD++ RE+LA+ QVWFQNRRAK+RK EK
Sbjct: 66 QQLEELESAFGRTHYPDVFTREDLAVKINLTEARVQVWFQNRRAKWRKTEK 116
>gi|397489578|ref|XP_003815802.1| PREDICTED: LOW QUALITY PROTEIN: paired mesoderm homeobox protein 2A
[Pan paniscus]
Length = 221
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 94 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 143
>gi|195117252|ref|XP_002003163.1| GI23866 [Drosophila mojavensis]
gi|193913738|gb|EDW12605.1| GI23866 [Drosophila mojavensis]
Length = 623
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 79 QQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKAER 129
>gi|242531293|gb|ACS92971.1| Drg11 [Ptychodera flava]
Length = 247
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 36/49 (73%), Gaps = 7/49 (14%)
Query: 3 LAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
L ELE AFAK+HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 1 LEELETAFAKTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKMER 49
>gi|167900486|ref|NP_001108138.1| aristaless related homeobox [Canis lupus familiaris]
Length = 574
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 351 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 400
>gi|313234391|emb|CBY24590.1| unnamed protein product [Oikopleura dioica]
Length = 305
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 38/53 (71%), Gaps = 7/53 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQL 46
EQL LE+AFAK+ YPDIY REELA QVWFQNRRAK+RK ++Q+
Sbjct: 138 EQLNLLESAFAKTQYPDIYYREELASRTKLTEARIQVWFQNRRAKFRKVQRQM 190
>gi|260817384|ref|XP_002603567.1| hypothetical protein BRAFLDRAFT_79100 [Branchiostoma floridae]
gi|229288886|gb|EEN59578.1| hypothetical protein BRAFLDRAFT_79100 [Branchiostoma floridae]
Length = 275
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 37/56 (66%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA 49
EQL ELE F ++HYPD + REEL+ QVWFQNRRAK RKQE QLQK
Sbjct: 114 EQLQELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLQKG 169
>gi|218675700|gb|AAI69334.2| aristaless related homeobox [synthetic construct]
Length = 248
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 25 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 74
>gi|443715779|gb|ELU07595.1| hypothetical protein CAPTEDRAFT_70059, partial [Capitella teleta]
Length = 65
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AFA++HYPDIY REE+A+ QVWFQNRRAK+RK E+
Sbjct: 16 QLKELEKAFAETHYPDIYTREEIAMKTDLTEARVQVWFQNRRAKFRKMER 65
>gi|440907876|gb|ELR57965.1| Paired mesoderm homeobox protein 2A, partial [Bos grunniens mutus]
Length = 155
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 102 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 151
>gi|395838112|ref|XP_003791968.1| PREDICTED: homeobox protein ARX [Otolemur garnettii]
Length = 570
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 347 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 396
>gi|395518788|ref|XP_003763539.1| PREDICTED: homeobox protein ARX [Sarcophilus harrisii]
Length = 339
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 116 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 165
>gi|354488799|ref|XP_003506553.1| PREDICTED: ALX homeobox protein 1 [Cricetulus griseus]
Length = 326
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 18/90 (20%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT- 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A +
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSH 202
Query: 52 ------PSVIPTCNG--AMMRNIYPTTSRG 73
SV+P + + N++P + G
Sbjct: 203 FAATYDISVLPRTDSYPQIQNNLWPGNASG 232
>gi|350399127|ref|XP_003485430.1| PREDICTED: short stature homeobox protein 2-like [Bombus impatiens]
Length = 384
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 37/57 (64%), Gaps = 7/57 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKAL 50
EQLAELE F ++HYPD + REEL+ QVWFQNRRAK RK E QL K L
Sbjct: 200 EQLAELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQLHKGL 256
>gi|344252001|gb|EGW08105.1| ALX homeobox protein 1 [Cricetulus griseus]
Length = 295
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 18/90 (20%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A +
Sbjct: 112 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSH 171
Query: 53 -------SVIPTCNG--AMMRNIYPTTSRG 73
SV+P + + N++P + G
Sbjct: 172 FAATYDISVLPRTDSYPQIQNNLWPGNASG 201
>gi|340369432|ref|XP_003383252.1| PREDICTED: hypothetical protein LOC100635424 [Amphimedon
queenslandica]
Length = 337
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ 45
QL ELE AF ++HYPD++ RE+LA QVWFQNRRAK+RK+EKQ
Sbjct: 93 QLRELEKAFERTHYPDVFTREDLANRVELTEARVQVWFQNRRAKWRKKEKQ 143
>gi|3021450|emb|CAA75668.1| prdl-a [Hydra vulgaris]
Length = 229
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 51 QLDELERAFDKTHYPDVFMREELAVRVHLTEARVQVWFQNRRAKWRKREK 100
>gi|18858285|ref|NP_571459.1| aristaless-related homeobox protein [Danio rerio]
gi|18202032|sp|O42115.1|ARX_DANRE RecName: Full=Aristaless-related homeobox protein; Short=ARX
gi|2317261|dbj|BAA21764.1| Arx homeoprotein [Danio rerio]
gi|190337749|gb|AAI63865.1| Aristaless related homeobox [Danio rerio]
gi|190337753|gb|AAI63872.1| Aristaless related homeobox [Danio rerio]
Length = 453
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 226 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 275
>gi|357612699|gb|EHJ68133.1| aristaless-related homeobox protein [Danaus plexippus]
Length = 448
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL +LEAAF K+HYPD++ REELA+ QVWFQNRRAK+RKQ+K
Sbjct: 138 QLEQLEAAFHKTHYPDVFFREELAMRIDLTEARVQVWFQNRRAKWRKQQK 187
>gi|307170800|gb|EFN62916.1| Homeobox protein ARX [Camponotus floridanus]
Length = 382
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 7/57 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALT 51
QL ELE AF + YPD++ REELA+ QVWFQNRRAK+RK+EK L + T
Sbjct: 79 QLHELEKAFGNTQYPDVFTREELAMRLDLSEARVQVWFQNRRAKWRKKEKALGRDTT 135
>gi|82570559|gb|ABB83751.1| RX-paired class homeobox protein [Nematostella vectensis]
Length = 60
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 36/49 (73%), Gaps = 7/49 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQE 43
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QE
Sbjct: 12 QLHELERAFEKSHYPDVYTREELALKISLPEVRVQVWFQNRRAKWRRQE 60
>gi|340714415|ref|XP_003395724.1| PREDICTED: short stature homeobox protein 2-like [Bombus
terrestris]
Length = 384
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 37/57 (64%), Gaps = 7/57 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKAL 50
EQLAELE F ++HYPD + REEL+ QVWFQNRRAK RK E QL K L
Sbjct: 200 EQLAELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQLHKGL 256
>gi|256087958|ref|XP_002580128.1| retinal homeobox protein [Schistosoma mansoni]
gi|360044119|emb|CCD81666.1| putative retinal homeobox protein [Schistosoma mansoni]
Length = 248
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 36/51 (70%), Gaps = 7/51 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ 45
QL ELE AF SHYPD+ REELA + QVWFQNRRAK+R+QEKQ
Sbjct: 89 QLHELECAFEHSHYPDVLNREELAARIRLPEVRVQVWFQNRRAKWRRQEKQ 139
>gi|68144510|gb|AAY86176.1| goosecoid [Heliocidaris tuberculata]
Length = 348
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKA 49
EQL +LEA F K+HYPD+ REELAI +VWF+NRRAK+RKQ+++ Q+A
Sbjct: 160 EQLEQLEATFEKTHYPDVMLREELAIKVDLKEERVEVWFKNRRAKWRKQKREQQEA 215
>gi|335309039|ref|XP_003361470.1| PREDICTED: paired mesoderm homeobox protein 2B-like [Sus scrofa]
Length = 170
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 37/53 (69%), Gaps = 10/53 (18%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF----------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 94 QLKELERVFAETHYPDIYTREELALKIDLTASFLLSGQVWFQNRRAKFRKQER 146
>gi|26024213|ref|NP_031518.2| homeobox protein ARX [Mus musculus]
gi|27923957|sp|O35085.3|ARX_MOUSE RecName: Full=Homeobox protein ARX; AltName:
Full=Aristaless-related homeobox
gi|22163970|dbj|BAA28284.2| Arx homeoprotein [Mus musculus]
gi|30354717|gb|AAH52033.1| Aristaless related homeobox [Mus musculus]
Length = 564
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 341 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 390
>gi|18996777|gb|AAL83210.1|AF465939_1 paired-like homeodomain transcription factor Shox [Branchiostoma
floridae]
Length = 286
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 37/56 (66%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA 49
EQL ELE F ++HYPD + REEL+ QVWFQNRRAK RKQE QLQK
Sbjct: 114 EQLQELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLQKG 169
>gi|221119369|ref|XP_002160848.1| PREDICTED: homeobox protein aristaless-like isoform 2 [Hydra
magnipapillata]
Length = 210
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 32 QLDELERAFDKTHYPDVFMREELAVRVHLTEARVQVWFQNRRAKWRKREK 81
>gi|736381|gb|AAA64491.1| Pax7 [Mus musculus]
Length = 290
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA---- 49
EQL ELE AF ++HYPDIY REELA FQVWF NRRA++RKQ Q A
Sbjct: 191 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARFQVWFSNRRARWRKQAGANQLAAFNH 250
Query: 50 LTPSVIPTCNGAMM------RNIYPTTS 71
L P P + + YPTT+
Sbjct: 251 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 278
>gi|402909744|ref|XP_003917569.1| PREDICTED: homeobox protein ARX [Papio anubis]
Length = 424
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 201 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 250
>gi|133778704|gb|AAI33878.1| Arx protein [Danio rerio]
Length = 382
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 226 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 275
>gi|47550979|ref|NP_999663.1| goosecoid transcription factor [Strongylocentrotus purpuratus]
gi|11127990|gb|AAG31170.1|AF315231_1 goosecoid transcription factor Gsc [Strongylocentrotus purpuratus]
Length = 320
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKA 49
EQL +LEA F K+HYPD+ REELAI +VWF+NRRAK+RKQ+++ Q+A
Sbjct: 155 EQLEQLEATFEKTHYPDVMLREELAIKVDLKEERVEVWFKNRRAKWRKQKREQQEA 210
>gi|320544499|ref|NP_001097075.2| CG34340 [Drosophila melanogaster]
gi|116875717|gb|ABK30908.1| IP09201p [Drosophila melanogaster]
gi|318068302|gb|ABV53614.2| CG34340 [Drosophila melanogaster]
Length = 587
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 62 QQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKAER 112
>gi|389614437|dbj|BAM20266.1| aristaless, partial [Papilio xuthus]
Length = 80
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 19 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 68
>gi|56694798|gb|AAW23061.1| Prop-a [Oikopleura dioica]
Length = 315
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL LE+AFAK+ YPDIY REELA QVWFQNRRAK+RK ++Q+ +
Sbjct: 117 EQLNLLESAFAKTQYPDIYYREELASRTKLTEARIQVWFQNRRAKFRKVQRQMMASNALQ 176
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPYPHPNTI 83
P I P S+G+Q P P+ +
Sbjct: 177 SQPNLLNRTPAGITP-FSQGFQGLPCPSGL 205
>gi|328781243|ref|XP_394790.4| PREDICTED: visual system homeobox 1-like [Apis mellifera]
Length = 437
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
+QL ELEAAF ++HYPD+Y RE L++ QVWFQNRRAK+RK EK
Sbjct: 206 QQLEELEAAFKEAHYPDVYAREMLSLRTDLPEDRIQVWFQNRRAKWRKTEK 256
>gi|224047324|ref|XP_002195530.1| PREDICTED: visual system homeobox 1 [Taeniopygia guttata]
Length = 260
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 78 QLEELEKAFNEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 134
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 135 MAEYGLYGAMVRHSIP 150
>gi|383848891|ref|XP_003700081.1| PREDICTED: uncharacterized protein LOC100883611 [Megachile
rotundata]
Length = 430
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
+QL ELEAAF ++HYPD+Y RE L++ QVWFQNRRAK+RK EK
Sbjct: 199 QQLEELEAAFKEAHYPDVYAREMLSLRTDLPEDRIQVWFQNRRAKWRKTEK 249
>gi|340718758|ref|XP_003397830.1| PREDICTED: hypothetical protein LOC100650965 [Bombus terrestris]
gi|350405057|ref|XP_003487311.1| PREDICTED: hypothetical protein LOC100748956 [Bombus impatiens]
Length = 437
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
+QL ELEAAF ++HYPD+Y RE L++ QVWFQNRRAK+RK EK
Sbjct: 206 QQLEELEAAFKEAHYPDVYAREMLSLRTDLPEDRIQVWFQNRRAKWRKTEK 256
>gi|157137459|ref|XP_001663998.1| hypothetical protein AaeL_AAEL013809 [Aedes aegypti]
gi|108869695|gb|EAT33920.1| AAEL013809-PA [Aedes aegypti]
Length = 358
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RK EK
Sbjct: 16 QLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKNEK 65
>gi|351706647|gb|EHB09566.1| Visual system homeobox 1 [Heterocephalus glaber]
Length = 299
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 12/77 (15%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPS 53
+QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + S
Sbjct: 117 QQLEELEKAFGEAHYPDVYAREMLALKTQLPEDRIQVWFQNRRAKWRKREKRWGGS---S 173
Query: 54 VIPTCN--GAMMRNIYP 68
V+ GA++R+ P
Sbjct: 174 VMAEYGLYGALVRHCLP 190
>gi|322366524|gb|ADW95336.1| goosecoid [Paracentrotus lividus]
Length = 329
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKA 49
EQL +LEA F K+HYPD+ REELAI +VWF+NRRAK+RKQ+++ Q+A
Sbjct: 161 EQLEQLEATFEKTHYPDVMLREELAIKVDLKEERVEVWFKNRRAKWRKQKREPQEA 216
>gi|68144508|gb|AAY86175.1| goosecoid [Heliocidaris erythrogramma]
Length = 321
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKA 49
EQL +LEA F K+HYPD+ REELAI +VWF+NRRAK+RKQ+++ Q+A
Sbjct: 161 EQLEQLEATFEKTHYPDVMLREELAIKVDLKEERVEVWFKNRRAKWRKQKREQQEA 216
>gi|405951906|gb|EKC19775.1| Dorsal root ganglia homeobox protein [Crassostrea gigas]
Length = 492
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKA 49
+QL ELE AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+ Q++
Sbjct: 108 QQLEELEKAFAQTHYPDVFTREDLAMRINLTEARVQVWFQNRRAKWRKSERFTQQS 163
>gi|440910593|gb|ELR60376.1| Homeobox protein ARX [Bos grunniens mutus]
Length = 503
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 286 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 335
>gi|403263874|ref|XP_003924228.1| PREDICTED: homeobox protein ARX [Saimiri boliviensis boliviensis]
Length = 464
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 241 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 290
>gi|334326510|ref|XP_001373881.2| PREDICTED: retinal homeobox protein Rx1-like [Monodelphis
domestica]
Length = 208
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF +SHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 40 QLHQLERAFERSHYPDVYSREELAMQVNLPEVRVQVWFQNRRAKWRRQEK 89
>gi|56694810|gb|AAW23067.1| Arix [Oikopleura dioica]
Length = 198
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 42/67 (62%), Gaps = 9/67 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE F ++HYPDIY RE+LA Q WFQNRRAK+RKQEK L K+ PS
Sbjct: 91 QLRELERVFHETHYPDIYTREDLASRIELTEARVQAWFQNRRAKFRKQEK-LSKSKAPSE 149
Query: 55 IPTCNGA 61
T GA
Sbjct: 150 -KTAGGA 155
>gi|195425783|ref|XP_002061148.1| GK10326 [Drosophila willistoni]
gi|194157233|gb|EDW72134.1| GK10326 [Drosophila willistoni]
Length = 278
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 46/78 (58%), Gaps = 17/78 (21%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK--QLQKAL- 50
+QL ELEA F K+HYPD++ REE+A+ QVWFQNRRAK+RKQ + LQ A
Sbjct: 34 QQLQELEALFQKTHYPDVFLREEVALRISLSEARVQVWFQNRRAKWRKQARLQLLQDAWR 93
Query: 51 -------TPSVIPTCNGA 61
TP VI GA
Sbjct: 94 MRCLSLGTPPVIAGGTGA 111
>gi|405965818|gb|EKC31172.1| Homeobox protein aristaless [Crassostrea gigas]
Length = 332
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 128 QLEELERAFQKTHYPDVFMREELAMRIDLTEARVQVWFQNRRAKWRKKEK 177
>gi|380025331|ref|XP_003696428.1| PREDICTED: retinal homeobox protein Rx2-like [Apis florea]
Length = 392
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELE F ++HYPD + REEL+ QVWFQNRRAK RK E QL K +
Sbjct: 216 EQLAELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQLHKGVAGG 275
Query: 54 VI 55
++
Sbjct: 276 MV 277
>gi|168479562|dbj|BAG11537.1| paired-box protein 3/7 [Eptatretus burgeri]
Length = 451
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 44/84 (52%), Gaps = 14/84 (16%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 170 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 229
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPY 77
+IP PT G PY
Sbjct: 230 LIPG-------GFPPTGMPGLAPY 246
>gi|74178801|dbj|BAE34043.1| unnamed protein product [Mus musculus]
Length = 363
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA QVWFQNRRAK+RK+EK+ + SV
Sbjct: 182 QLEELEKAFGEAHYPDVYAREMLAAKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 238
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 239 MAEYGLYGAMVRHCIP 254
>gi|335305801|ref|XP_003360298.1| PREDICTED: homeobox protein ARX-like [Sus scrofa]
Length = 380
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 157 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 206
>gi|16905095|ref|NP_473409.1| visual system homeobox 1 [Mus musculus]
gi|25009568|sp|Q91V10.1|VSX1_MOUSE RecName: Full=Visual system homeobox 1; AltName: Full=Homeodomain
protein RINX; AltName: Full=Retinal inner nuclear layer
homeobox protein; AltName: Full=Transcription factor
VSX1
gi|15811381|gb|AAL08947.1|AF395732_1 visual system homeobox 1 [Mus musculus]
gi|15825170|gb|AAL09584.1|AF391757_1 homeodomain protein RINX [Mus musculus]
gi|15825172|gb|AAL09585.1|AF391758_1 homeodomain protein RINX [Mus musculus]
gi|16580161|gb|AAL11431.1| transcription factor VSX1 [Mus musculus]
gi|34785871|gb|AAH57647.1| Visual system homeobox 1 homolog (zebrafish) [Mus musculus]
gi|187953917|gb|AAI38461.1| Vsx1 protein [Mus musculus]
gi|223460705|gb|AAI38457.1| Vsx1 protein [Mus musculus]
Length = 363
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA QVWFQNRRAK+RK+EK+ + SV
Sbjct: 182 QLEELEKAFGEAHYPDVYAREMLAAKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 238
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 239 MAEYGLYGAMVRHCIP 254
>gi|395512821|ref|XP_003760632.1| PREDICTED: retinal homeobox protein Rx1-like [Sarcophilus
harrisii]
Length = 208
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF +SHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 40 QLHQLERAFERSHYPDVYSREELATQVNLPEVRVQVWFQNRRAKWRRQEK 89
>gi|345488412|ref|XP_003425902.1| PREDICTED: hypothetical protein LOC100680430 [Nasonia vitripennis]
Length = 60
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 31/35 (88%)
Query: 94 GMSTEDEWYNKSLSALRMNSSHHSNLATPMLQYQT 128
GMS EDEWYNKS+SALRMN++HH NL PMLQYQT
Sbjct: 26 GMSAEDEWYNKSISALRMNTAHHPNLTAPMLQYQT 60
>gi|410967992|ref|XP_003990497.1| PREDICTED: homeobox protein aristaless-like 3 [Felis catus]
Length = 372
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 18/90 (20%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 193 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP 252
Query: 53 -------SVIPTCNG--AMMRNIYPTTSRG 73
SV+P + + +++P+ G
Sbjct: 253 FPSPYDISVLPRADSHPPLQNSLWPSPGSG 282
>gi|405964577|gb|EKC30046.1| Short stature homeobox protein [Crassostrea gigas]
Length = 274
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 38/56 (67%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA 49
EQL ELE F ++HYPD + REEL+ QVWFQNRRAK RKQE Q+QKA
Sbjct: 117 EQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQESQMQKA 172
>gi|291407255|ref|XP_002720021.1| PREDICTED: aristaless related homeobox [Oryctolagus cuniculus]
Length = 454
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 231 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 280
>gi|328788511|ref|XP_001120111.2| PREDICTED: short stature homeobox protein 2-like [Apis mellifera]
Length = 376
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELE F ++HYPD + REEL+ QVWFQNRRAK RK E QL K +
Sbjct: 198 EQLAELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQLHKGVAGG 257
Query: 54 VI 55
++
Sbjct: 258 MV 259
>gi|344275621|ref|XP_003409610.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein aristaless-like
3-like [Loxodonta africana]
Length = 343
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 16/74 (21%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 164 QLEELEKVFQKTHYPDVYAREQLAVRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP 223
Query: 53 -------SVIPTCN 59
SV+P N
Sbjct: 224 FTAAYDISVLPRTN 237
>gi|190608780|gb|ACE79721.1| paired-box transcription factor 3/7 [Branchiostoma lanceolatum]
Length = 297
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 48/90 (53%), Gaps = 21/90 (23%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF +RRA++RKQ+ Q PS
Sbjct: 106 EQLDELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSSRRARWRKQQGAQQ---IPS 162
Query: 54 VIPTCNGAMMRNIYPTTSRG---YQPYPHP 80
+P YP + G Y P P P
Sbjct: 163 FMPLG--------YPAPAAGTPTYMPVPEP 184
>gi|348512008|ref|XP_003443535.1| PREDICTED: aristaless-related homeobox protein-like [Oreochromis
niloticus]
Length = 466
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 8/62 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK +A PS
Sbjct: 233 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGVQA-HPSG 291
Query: 55 IP 56
+P
Sbjct: 292 LP 293
>gi|291233545|ref|XP_002736712.1| PREDICTED: visual system homeobox 2-like [Saccoglossus kowalevskii]
Length = 361
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE L++ QVWFQNRRAK+RK+EK+ ++ SV
Sbjct: 167 QLEELEKAFNEAHYPDVYAREVLSLRTDLPEDRIQVWFQNRRAKWRKKEKKWGRS---SV 223
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 224 MAEYGLYGAMVRHSLP 239
>gi|337216969|gb|AEI60176.1| Pax7-forkhead fusion protein [Homo sapiens]
Length = 405
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 26 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 85
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 86 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 113
>gi|348500845|ref|XP_003437982.1| PREDICTED: paired box protein Pax-3-like [Oreochromis niloticus]
Length = 546
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 51/102 (50%), Gaps = 17/102 (16%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQ------ 47
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q
Sbjct: 232 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNH 291
Query: 48 ---KALTPSVIPTCNGAMMRNI-YPTTSRGYQPYPHPNTINR 85
PS +P + + YP TS P+T++R
Sbjct: 292 LIPGGFPPSAMPGLQPYQLSDSPYPQTSIAQAASEQPSTVHR 333
>gi|301615106|ref|XP_002937019.1| PREDICTED: short stature homeobox protein-like [Xenopus (Silurana)
tropicalis]
Length = 290
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKAL--- 50
EQL ELE F ++HYPD + REEL+ QVWFQNRRAK RKQE Q+ K +
Sbjct: 125 EQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILG 184
Query: 51 TPSVIPTC 58
T S + TC
Sbjct: 185 TGSHLETC 192
>gi|113195661|ref|NP_001037829.1| homeodomain protein Phox2 [Ciona intestinalis]
gi|106647225|gb|ABF82264.1| Phox2 [Ciona intestinalis]
Length = 154
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%), Gaps = 7/54 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RK E+ Q+
Sbjct: 57 QLKELEKVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKWRKMERAKQQ 110
>gi|374277734|gb|AEZ03833.1| homeobrain [Terebratalia transversa]
Length = 323
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 7/54 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
QL +LE AF KS YPD++ REELA+ QVWFQNRRAK+RK+EK L +
Sbjct: 150 QLHQLERAFEKSQYPDVFSREELAMRLDLSEARVQVWFQNRRAKWRKREKALGR 203
>gi|308220180|gb|ADO22662.1| PRD class homeobox transcription factor PRD50 [Mnemiopsis leidyi]
Length = 323
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 43/72 (59%), Gaps = 12/72 (16%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE FA +HYPDI+ REELA QVWFQNRRAK+RK EK K ++
Sbjct: 121 QLDELEQVFATTHYPDIFTREELANKHKLTEARVQVWFQNRRAKHRKNEK--AKTAAENL 178
Query: 55 IPTCNGAMMRNI 66
I N +M NI
Sbjct: 179 I---NSNLMSNI 187
>gi|260826474|ref|XP_002608190.1| retinal homeobox protein-like protein [Branchiostoma floridae]
gi|229293541|gb|EEN64200.1| retinal homeobox protein-like protein [Branchiostoma floridae]
Length = 268
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 38/52 (73%), Gaps = 7/52 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQL 46
QL ELE AF ++HYPDI+ REELA+ QVWFQNRRAK+RK+EK L
Sbjct: 123 QLQELERAFRQTHYPDIFMREELAMRVNLPESRVQVWFQNRRAKWRKREKHL 174
>gi|380805315|gb|AFE74533.1| homeobox protein ARX, partial [Macaca mulatta]
Length = 161
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 65 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 114
>gi|317419844|emb|CBN81880.1| Aristaless-related homeobox protein [Dicentrarchus labrax]
Length = 463
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 8/62 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK +A PS
Sbjct: 232 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGVQA-HPSG 290
Query: 55 IP 56
+P
Sbjct: 291 LP 292
>gi|195148028|ref|XP_002014976.1| GL18665 [Drosophila persimilis]
gi|194106929|gb|EDW28972.1| GL18665 [Drosophila persimilis]
Length = 370
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 62 QQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKAER 112
>gi|148697792|gb|EDL29739.1| aristaless related homeobox gene (Drosophila) [Mus musculus]
Length = 378
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 155 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 204
>gi|292628755|ref|XP_002667096.1| PREDICTED: aristaless-related homeobox protein-like [Danio rerio]
Length = 385
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 173 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 222
>gi|301782575|ref|XP_002926705.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein ARX-like
[Ailuropoda melanoleuca]
Length = 459
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 296 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 345
>gi|312382759|gb|EFR28101.1| hypothetical protein AND_04364 [Anopheles darlingi]
Length = 158
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF ++HYPD++ REELA+ QVWFQNRRAK+RK EK
Sbjct: 16 QLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKSEK 65
>gi|383863721|ref|XP_003707328.1| PREDICTED: short stature homeobox protein-like [Megachile
rotundata]
Length = 374
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELE F ++HYPD + REEL+ QVWFQNRRAK RK E QL K +
Sbjct: 196 EQLAELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQLHKGVAGG 255
Query: 54 VI 55
++
Sbjct: 256 MV 257
>gi|383861926|ref|XP_003706435.1| PREDICTED: retinal homeobox protein Rx2-like [Megachile rotundata]
Length = 296
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 37/54 (68%), Gaps = 7/54 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
QL ELE AF + YPD++ REELA+ QVWFQNRRAK+RK+EK L +
Sbjct: 79 QLHELEKAFGNTQYPDVFTREELAMRLDLSEARVQVWFQNRRAKWRKKEKALGR 132
>gi|270010993|gb|EFA07441.1| homeobrain [Tribolium castaneum]
Length = 261
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 7/62 (11%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL +LE AF K+ YPD++ REELA+ QVWFQNRRAK+RK+EK L + P +
Sbjct: 75 QLHQLERAFEKTQYPDVFTREELAMRLDLSEARVQVWFQNRRAKWRKREKALGREAVPFM 134
Query: 55 IP 56
P
Sbjct: 135 HP 136
>gi|47228289|emb|CAG07684.1| unnamed protein product [Tetraodon nigroviridis]
Length = 440
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQ----KA 49
EQL ELE AF ++HYPDIY REE+A QVWF NRRA++RKQ Q
Sbjct: 187 EQLEELERAFERTHYPDIYTREEVAQRAKLTEARVQVWFSNRRARWRKQAGASQLMAFNH 246
Query: 50 LTPSVIPTCNGAMMR------NIYPTTSRGYQPYPHPNTINRQHFVILVPGMSTEDEWYN 103
L P P+ + ++ + Y TS P P+T++R +P S N
Sbjct: 247 LIPGGFPSSAMSGLQPYQLSDSPYTPTSISQTPSEQPSTVHRPQ---PLPPTSVHQNGLN 303
Query: 104 KSLSALRMNSSH 115
S S+ NS++
Sbjct: 304 SSASSQDGNSAY 315
>gi|307192280|gb|EFN75567.1| Homeobox protein ARX [Harpegnathos saltator]
Length = 299
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 37/54 (68%), Gaps = 7/54 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
QL ELE AF + YPD++ REELA+ QVWFQNRRAK+RK+EK L +
Sbjct: 79 QLHELEKAFGNTQYPDVFTREELAMRLDLSEARVQVWFQNRRAKWRKKEKALGR 132
>gi|195130567|ref|XP_002009723.1| GI15515 [Drosophila mojavensis]
gi|193908173|gb|EDW07040.1| GI15515 [Drosophila mojavensis]
Length = 288
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 46/78 (58%), Gaps = 17/78 (21%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK--QLQKA-- 49
+QL ELEA F K+HYPD++ REE+A+ QVWFQNRRAK+RKQ + LQ A
Sbjct: 34 QQLQELEALFQKTHYPDVFLREEVALRISLSEARVQVWFQNRRAKWRKQARLQLLQDAWR 93
Query: 50 ------LTPSVIPTCNGA 61
TP VI G+
Sbjct: 94 MRCLSLGTPPVIGGGGGS 111
>gi|405950916|gb|EKC18872.1| Visual system homeobox 2 [Crassostrea gigas]
Length = 353
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF +HYPD+Y RE LA+ QVWFQNRRAK+RK EK ++ S+
Sbjct: 165 QLEELEKAFKDAHYPDVYAREVLALKTSLPEDRIQVWFQNRRAKWRKTEKTWGRS---SI 221
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 222 MAEYGLYGAMVRHSLP 237
>gi|345780690|ref|XP_539704.3| PREDICTED: ALX homeobox protein 1 [Canis lupus familiaris]
Length = 265
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 82 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 138
>gi|344280090|ref|XP_003411818.1| PREDICTED: visual system homeobox 1-like [Loxodonta africana]
Length = 366
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK
Sbjct: 176 QLEELEKAFSEAHYPDVYARETLAMKTKLPEDRVQVWFQNRRAKWRKREK 225
>gi|432852270|ref|XP_004067164.1| PREDICTED: homeobox protein aristaless-like 4-like [Oryzias
latipes]
Length = 367
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 188 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 246
>gi|126339394|ref|XP_001364457.1| PREDICTED: ALX homeobox protein 1 [Monodelphis domestica]
Length = 326
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|34419191|dbj|BAC84954.1| homeobox protein Chx10-1 [Cynops pyrrhogaster]
Length = 341
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+ +HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 160 QLEELEKAFSDAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 216
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 217 MAEYGLYGAMVRHSIP 232
>gi|357616186|gb|EHJ70056.1| homeobrain [Danaus plexippus]
Length = 261
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 39/58 (67%), Gaps = 7/58 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTP 52
QL ELE AF K+ YPD++ REELA+ QVWFQNRRAK+RK+EK L + P
Sbjct: 94 QLHELERAFDKTQYPDVFTREELALRLDLSEARVQVWFQNRRAKWRKREKALGREHAP 151
>gi|242009008|ref|XP_002425285.1| homeobox protein arx, putative [Pediculus humanus corporis]
gi|212509050|gb|EEB12547.1| homeobox protein arx, putative [Pediculus humanus corporis]
Length = 513
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 60 QQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKAER 110
>gi|149638014|ref|XP_001513012.1| PREDICTED: ALX homeobox protein 1 [Ornithorhynchus anatinus]
Length = 326
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|89148056|gb|ABD62780.1| Rx homeobox protein [Branchiostoma lanceolatum]
Length = 106
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 38/52 (73%), Gaps = 7/52 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQL 46
QL ELE AF ++HYPDI+ REELA+ QVWFQNRRAK+RK+EK L
Sbjct: 11 QLQELERAFRQTHYPDIFMREELAMRVNLPESRVQVWFQNRRAKWRKREKHL 62
>gi|47224480|emb|CAG08730.1| unnamed protein product [Tetraodon nigroviridis]
Length = 249
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 66 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 124
>gi|41581181|emb|CAF02090.1| paired box protein 7 [Salmo salar]
Length = 519
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRAK+RKQ Q A
Sbjct: 243 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRAKWRKQAGANQLAAFNH 302
Query: 54 VIP 56
++P
Sbjct: 303 LLP 305
>gi|363727605|ref|XP_425445.3| PREDICTED: ALX homeobox protein 1 [Gallus gallus]
Length = 328
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 145 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 201
>gi|291222403|ref|XP_002731203.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 379
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 8/68 (11%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL +LE AF K+ YPD++ REELA+ QVWFQNRRAK+RK+EK L + +P+
Sbjct: 180 QLHQLERAFEKTQYPDVFTREELALRLDLSEARVQVWFQNRRAKWRKREKALGRE-SPNF 238
Query: 55 IPTCNGAM 62
+ NG +
Sbjct: 239 LSPYNGDL 246
>gi|348580359|ref|XP_003475946.1| PREDICTED: ALX homeobox protein 1-like [Cavia porcellus]
Length = 353
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 170 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 226
>gi|6978601|ref|NP_037053.1| ALX homeobox protein 1 [Rattus norvegicus]
gi|3023581|sp|Q63087.1|ALX1_RAT RecName: Full=ALX homeobox protein 1; AltName: Full=Cartilage
homeoprotein 1; Short=CART-1
gi|413751|gb|AAA40877.1| homeoprotein 1 [Rattus norvegicus]
gi|149067054|gb|EDM16787.1| cartilage homeo protein 1, isoform CRA_a [Rattus norvegicus]
gi|149067055|gb|EDM16788.1| cartilage homeo protein 1, isoform CRA_a [Rattus norvegicus]
gi|165970652|gb|AAI58592.1| ALX homeobox 1 [Rattus norvegicus]
Length = 326
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|449272667|gb|EMC82474.1| ALX homeobox protein 1 [Columba livia]
Length = 326
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|363733528|ref|XP_001234151.2| PREDICTED: paired mesoderm homeobox protein 2B [Gallus gallus]
Length = 250
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RK E+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKLER 158
>gi|26352187|dbj|BAC39730.1| unnamed protein product [Mus musculus]
Length = 320
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 137 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 193
>gi|432916066|ref|XP_004079275.1| PREDICTED: paired box protein Pax-3 [Oryzias latipes]
Length = 487
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 45/84 (53%), Gaps = 14/84 (16%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q
Sbjct: 230 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNH 289
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPY 77
+IP+ P+ G QPY
Sbjct: 290 LIPS-------GFPPSAMPGLQPY 306
>gi|47229844|emb|CAG07040.1| unnamed protein product [Tetraodon nigroviridis]
Length = 591
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 44/77 (57%), Gaps = 11/77 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA---- 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 266 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 325
Query: 50 LTPSVIPTCNGAMMRNI 66
L P +P A + +I
Sbjct: 326 LLPGGVPPYRDANLTHI 342
>gi|410908863|ref|XP_003967910.1| PREDICTED: aristaless-related homeobox protein-like [Takifugu
rubripes]
Length = 463
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 8/62 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK +A PS
Sbjct: 232 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGVQA-HPSG 290
Query: 55 IP 56
+P
Sbjct: 291 LP 292
>gi|165973350|ref|NP_001035436.3| pituitary homeobox 1 [Danio rerio]
gi|158380249|gb|ABW37421.1| paired-like homeodomain transcription factor 1 [Danio rerio]
Length = 285
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 16/94 (17%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTP- 52
+QL ELEA F ++ YPD+ REE+A+ +VWF+NRRAK+RK+E+ Q L
Sbjct: 68 QQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQMDLCKN 127
Query: 53 SVIPTCNGAMM--RNIYPT------TSRGYQPYP 78
S +P +G M ++YPT T++G P P
Sbjct: 128 SYLPQFSGLMQPYDDVYPTYTYNNWTNKGLTPAP 161
>gi|56694804|gb|AAW23064.1| Arx [Oikopleura dioica]
Length = 277
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 36/55 (65%), Gaps = 7/55 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKA 49
QL ELE F ++HYPD++ REELA QVWFQNRRAK+RK+EK Q
Sbjct: 137 QLEELENTFVRTHYPDVFTREELAARIDLTEARVQVWFQNRRAKWRKREKHAQDG 191
>gi|295321888|pdb|3LNQ|A Chain A, Structure Of Aristaless Homeodomain In Complex With Dna
Length = 58
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 37/49 (75%), Gaps = 7/49 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQE
Sbjct: 10 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58
>gi|410908673|ref|XP_003967815.1| PREDICTED: ALX homeobox protein 1-like [Takifugu rubripes]
Length = 320
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A T
Sbjct: 130 QLEELEKVFQKTHYPDVYVREQLAMRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKT 188
>gi|269200156|gb|ACZ28705.1| paired box protein 6 isoform c [Homo sapiens]
Length = 401
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|224094163|ref|XP_002196043.1| PREDICTED: ALX homeobox protein 1 [Taeniopygia guttata]
Length = 328
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 145 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 201
>gi|183207891|gb|ACC59092.1| paired-like homeodomain transcription factor 1 [Danio rerio]
Length = 285
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 16/94 (17%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTP- 52
+QL ELEA F ++ YPD+ REE+A+ +VWF+NRRAK+RK+E+ Q L
Sbjct: 68 QQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQMDLCKN 127
Query: 53 SVIPTCNGAMM--RNIYPT------TSRGYQPYP 78
S +P +G M ++YPT T++G P P
Sbjct: 128 SYLPQFSGLMQPYDDVYPTYTYNNWTNKGLTPAP 161
>gi|449269616|gb|EMC80374.1| Visual system homeobox 1, partial [Columba livia]
Length = 204
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 38 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 94
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 95 MAEYGLYGAMVRHSIP 110
>gi|403272040|ref|XP_003927898.1| PREDICTED: ALX homeobox protein 1 [Saimiri boliviensis boliviensis]
Length = 326
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|432950125|ref|XP_004084398.1| PREDICTED: paired box protein Pax-7-like [Oryzias latipes]
Length = 403
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 41/70 (58%), Gaps = 11/70 (15%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA---- 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q +
Sbjct: 231 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGAHQLSAFNH 290
Query: 50 LTPSVIPTCN 59
L PS PT
Sbjct: 291 LLPSGFPTTG 300
>gi|332221029|ref|XP_003259660.1| PREDICTED: ALX homeobox protein 1 [Nomascus leucogenys]
Length = 326
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|296212490|ref|XP_002752854.1| PREDICTED: ALX homeobox protein 1 [Callithrix jacchus]
Length = 326
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|351706553|gb|EHB09472.1| ALX homeobox protein 1 [Heterocephalus glaber]
Length = 327
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 144 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 200
>gi|327259725|ref|XP_003214686.1| PREDICTED: homeobox protein aristaless-like 4-like [Anolis
carolinensis]
Length = 337
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 153 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 211
>gi|47230477|emb|CAF99670.1| unnamed protein product [Tetraodon nigroviridis]
Length = 263
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 80 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 138
>gi|45382115|ref|NP_990100.1| visual system homeobox 1 [Gallus gallus]
gi|25009570|sp|Q9IAL2.1|VSX1_CHICK RecName: Full=Visual system homeobox 1; AltName: Full=Homeobox
protein Chx10-1; AltName: Full=Transcription factor VSX1
gi|7211446|gb|AAF40312.1|AF178670_1 homeobox protein Chx10-1 [Gallus gallus]
Length = 350
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 168 QLEELEKAFNEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 224
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 225 MAEYGLYGAMVRHSIP 240
>gi|380023562|ref|XP_003695587.1| PREDICTED: retinal homeobox protein Rx2-like [Apis florea]
Length = 304
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 37/54 (68%), Gaps = 7/54 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
QL ELE AF + YPD++ REELA+ QVWFQNRRAK+RK+EK L +
Sbjct: 87 QLHELEKAFGNTQYPDVFTREELAMRLDLSEARVQVWFQNRRAKWRKKEKVLGR 140
>gi|402886991|ref|XP_003906892.1| PREDICTED: ALX homeobox protein 1 [Papio anubis]
gi|355786349|gb|EHH66532.1| Cartilage homeoprotein 1 [Macaca fascicularis]
Length = 326
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|125820954|ref|XP_001340966.1| PREDICTED: aristaless-like homeobox 4a [Danio rerio]
Length = 368
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 186 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 244
>gi|1098654|gb|AAB08960.1| Cart-1 [Homo sapiens]
Length = 326
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|154813201|ref|NP_008913.2| ALX homeobox protein 1 [Homo sapiens]
gi|114646088|ref|XP_509250.2| PREDICTED: ALX homeobox protein 1 [Pan troglodytes]
gi|397480872|ref|XP_003811689.1| PREDICTED: ALX homeobox protein 1 [Pan paniscus]
gi|90111820|sp|Q15699.2|ALX1_HUMAN RecName: Full=ALX homeobox protein 1; AltName: Full=Cartilage
homeoprotein 1; Short=CART-1
gi|15012050|gb|AAH10923.1| ALX homeobox 1 [Homo sapiens]
gi|46946691|emb|CAD90155.1| cartilage paired-class homeoprotein 1 [Homo sapiens]
gi|61363409|gb|AAX42385.1| cartilage paired-class homeoprotein 1 [synthetic construct]
gi|119617804|gb|EAW97398.1| cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|355564508|gb|EHH21008.1| Cartilage homeoprotein 1 [Macaca mulatta]
Length = 326
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|345305654|ref|XP_003428362.1| PREDICTED: LOW QUALITY PROTEIN: paired box protein Pax-6-like
[Ornithorhynchus anatinus]
Length = 704
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 502 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 561
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 562 TTPSHIP------ISSSFSTSV--YQPIPQPTT 586
>gi|110749929|ref|XP_001119902.1| PREDICTED: retinal homeobox protein Rx2 [Apis mellifera]
Length = 304
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 37/54 (68%), Gaps = 7/54 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
QL ELE AF + YPD++ REELA+ QVWFQNRRAK+RK+EK L +
Sbjct: 87 QLHELEKAFGNTQYPDVFTREELAMRLDLSEARVQVWFQNRRAKWRKKEKVLGR 140
>gi|410965202|ref|XP_003989139.1| PREDICTED: ALX homeobox protein 1 [Felis catus]
Length = 326
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|431892095|gb|ELK02542.1| ALX homeobox protein 1 [Pteropus alecto]
Length = 326
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|332016697|gb|EGI57540.1| Homeobox protein ARX [Acromyrmex echinatior]
Length = 287
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 37/54 (68%), Gaps = 7/54 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
QL ELE AF + YPD++ REELA+ QVWFQNRRAK+RK+EK L +
Sbjct: 70 QLHELEKAFGNTQYPDVFTREELAMRLDLSEARVQVWFQNRRAKWRKKEKALGR 123
>gi|340730425|gb|AEK64853.1| aristaless-like homeobox 4 protein [Xenopus (Silurana) tropicalis]
Length = 321
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 137 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 195
>gi|291389679|ref|XP_002711420.1| PREDICTED: cartilage paired-class homeoprotein 1 [Oryctolagus
cuniculus]
Length = 326
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|194226627|ref|XP_001493780.2| PREDICTED: ALX homeobox protein 1 [Equus caballus]
Length = 326
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|42601333|gb|AAS21360.1| aristaless related homeobox protein [Oikopleura dioica]
Length = 293
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 7/56 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKAL 50
QL ELE F ++HYPD++ REELA QVWFQNRRAK+RK+EK ++ L
Sbjct: 137 QLEELENTFVRTHYPDVFTREELAARIDLTEARVQVWFQNRRAKWRKREKHVKVKL 192
>gi|27369774|ref|NP_766141.1| ALX homeobox protein 1 [Mus musculus]
gi|67460551|sp|Q8C8B0.1|ALX1_MOUSE RecName: Full=ALX homeobox protein 1; AltName: Full=Cartilage
homeoprotein 1; Short=CART-1
gi|26339004|dbj|BAC33173.1| unnamed protein product [Mus musculus]
gi|30353921|gb|AAH52200.1| ALX homeobox 1 [Mus musculus]
gi|148689727|gb|EDL21674.1| cartilage homeo protein 1 [Mus musculus]
Length = 326
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|344266437|ref|XP_003405287.1| PREDICTED: ALX homeobox protein 1 [Loxodonta africana]
Length = 326
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|340709846|ref|XP_003393511.1| PREDICTED: retinal homeobox protein Rx1-like [Bombus terrestris]
Length = 304
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 37/54 (68%), Gaps = 7/54 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
QL ELE AF + YPD++ REELA+ QVWFQNRRAK+RK+EK L +
Sbjct: 87 QLHELEKAFGNTQYPDVFTREELAMRLDLSEARVQVWFQNRRAKWRKKEKVLGR 140
>gi|432861307|ref|XP_004069603.1| PREDICTED: homeobox protein aristaless-like 4-like [Oryzias
latipes]
Length = 367
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 184 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 242
>gi|327272822|ref|XP_003221183.1| PREDICTED: ALX homeobox protein 1-like [Anolis carolinensis]
Length = 331
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 148 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 204
>gi|124054328|gb|ABM89379.1| PAX7 [Pongo pygmaeus]
Length = 189
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 46/88 (52%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA---- 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 31 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 90
Query: 50 LTPSVIPTCNGAMM------RNIYPTTS 71
L P P + + YPTT+
Sbjct: 91 LLPGGFPPAGMPTLPPYQLPDSTYPTTT 118
>gi|148222011|ref|NP_001079116.1| ALX homeobox protein 1 [Xenopus laevis]
gi|3023596|sp|Q91574.1|ALX1_XENLA RecName: Full=ALX homeobox protein 1; AltName: Full=Cartilage
homeoprotein 1; Short=CART-1; AltName: Full=XCART1
gi|557062|gb|AAA50368.1| cartilage homeoprotein 1 precursor [Xenopus laevis]
Length = 335
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 152 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 208
>gi|410908185|ref|XP_003967571.1| PREDICTED: homeobox protein aristaless-like 4-like [Takifugu
rubripes]
Length = 365
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 182 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 240
>gi|301782565|ref|XP_002926696.1| PREDICTED: ALX homeobox protein 1-like [Ailuropoda melanoleuca]
gi|281346099|gb|EFB21683.1| hypothetical protein PANDA_016388 [Ailuropoda melanoleuca]
Length = 326
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|242013225|ref|XP_002427315.1| Short stature homeobox protein, putative [Pediculus humanus
corporis]
gi|212511656|gb|EEB14577.1| Short stature homeobox protein, putative [Pediculus humanus
corporis]
Length = 218
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 12/69 (17%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKAL--- 50
EQL ELE F ++HYPD + REEL+ QVWFQNRRAK RK E Q+QK +
Sbjct: 41 EQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQMQKGMIVS 100
Query: 51 --TPSVIPT 57
TP+ + T
Sbjct: 101 SHTPATVST 109
>gi|395543713|ref|XP_003773758.1| PREDICTED: homeobox protein aristaless-like 4 [Sarcophilus
harrisii]
Length = 154
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 73 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQIQQVRT 131
>gi|350406116|ref|XP_003487660.1| PREDICTED: retinal homeobox protein Rx1-like [Bombus impatiens]
Length = 305
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 37/54 (68%), Gaps = 7/54 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
QL ELE AF + YPD++ REELA+ QVWFQNRRAK+RK+EK L +
Sbjct: 87 QLHELEKAFGNTQYPDVFTREELAMRLDLSEARVQVWFQNRRAKWRKKEKVLGR 140
>gi|348512783|ref|XP_003443922.1| PREDICTED: homeobox protein aristaless-like 4-like [Oreochromis
niloticus]
Length = 368
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 185 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 243
>gi|171544937|ref|NP_001116385.1| aristaless-related homeobox protein [Oryzias latipes]
gi|157410507|gb|ABV53977.1| aristaless-related homeobox protein [Oryzias latipes]
Length = 464
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 233 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 282
>gi|148233818|ref|NP_001082826.1| aristaless-like homeobox 4 [Danio rerio]
gi|134025313|gb|AAI35030.1| Zgc:162606 protein [Danio rerio]
Length = 364
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 182 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 240
>gi|395820130|ref|XP_003783428.1| PREDICTED: ALX homeobox protein 1 [Otolemur garnettii]
Length = 326
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|300796276|ref|NP_001179220.1| ALX homeobox protein 1 [Bos taurus]
gi|426224245|ref|XP_004006284.1| PREDICTED: ALX homeobox protein 1 [Ovis aries]
gi|296487990|tpg|DAA30103.1| TPA: ALX homeobox protein 1-like [Bos taurus]
Length = 326
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|213624006|gb|AAI70518.1| Unknown (protein for MGC:197245) [Xenopus laevis]
gi|213625396|gb|AAI70520.1| Unknown (protein for MGC:197247) [Xenopus laevis]
Length = 335
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 152 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 208
>gi|440898843|gb|ELR50257.1| ALX homeobox protein 1 [Bos grunniens mutus]
Length = 326
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|296062658|emb|CBL93955.1| paired box 6 transcript variant [Podarcis siculus]
Length = 173
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 31 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 90
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + ++ YQP P P T
Sbjct: 91 NTPSHIPISSSF--------STSVYQPIPQPTT 115
>gi|18307889|gb|AAL67742.1|AF457141_1 Pax6 paired-less isoform [Mus musculus]
gi|18032022|gb|AAL40860.1| Pax6 paired-less isoform [Mus musculus]
gi|115501673|gb|ABI98884.1| paired box 6 transcript variant 39 [Columba livia]
gi|148695800|gb|EDL27747.1| paired box gene 6, isoform CRA_c [Mus musculus]
gi|149022828|gb|EDL79722.1| paired box gene 6, isoform CRA_b [Rattus norvegicus]
Length = 221
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 19 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 78
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + ++ YQP P P T
Sbjct: 79 NTPSHIPISSSF--------STSVYQPIPQPTT 103
>gi|348509621|ref|XP_003442346.1| PREDICTED: homeobox protein aristaless-like 4-like [Oreochromis
niloticus]
Length = 373
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 190 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 248
>gi|310893853|gb|ADP37890.1| paired-domain transcription factor Pax3/7-A [Lethenteron
camtschaticum]
Length = 507
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 48/94 (51%), Gaps = 19/94 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 222 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 281
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPY-----PHPNT 82
+IP P + G PY P+P +
Sbjct: 282 LIPG-------GFPPASMPGLPPYQLPEGPYPGS 308
>gi|92098338|gb|AAI15353.1| Paired-like homeodomain transcription factor 1 [Danio rerio]
Length = 281
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 16/94 (17%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTP- 52
+QL ELEA F ++ YPD+ REE+A+ +VWF+NRRAK+RK+E+ Q L
Sbjct: 64 QQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQMDLCKN 123
Query: 53 SVIPTCNGAMM--RNIYPT------TSRGYQPYP 78
S +P +G M ++YPT T++G P P
Sbjct: 124 SYLPQFSGLMQPYDDVYPTYTYNNWTNKGLTPAP 157
>gi|354503342|ref|XP_003513740.1| PREDICTED: homeobox protein aristaless-like 3-like [Cricetulus
griseus]
Length = 479
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 300 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKMQEGRNP 359
>gi|311256745|ref|XP_003126788.1| PREDICTED: ALX homeobox protein 1 [Sus scrofa]
Length = 326
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|195045512|ref|XP_001991987.1| GH24457 [Drosophila grimshawi]
gi|193892828|gb|EDV91694.1| GH24457 [Drosophila grimshawi]
Length = 264
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELEA F K+HYPD++ REE+A+ QVWFQNRRAK+RKQ +
Sbjct: 34 QQLQELEALFQKTHYPDVFLREEVALRISLSEARVQVWFQNRRAKWRKQAR 84
>gi|189240302|ref|XP_001813949.1| PREDICTED: similar to CG34340 CG34340-PD [Tribolium castaneum]
Length = 283
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE+AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 79 QQLEELESAFAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKAER 129
>gi|432116877|gb|ELK37464.1| Retina and anterior neural fold homeobox protein 2 [Myotis davidii]
Length = 184
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 53/103 (51%), Gaps = 19/103 (18%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL +LE AF SHYPDIY REELA + QVWFQNRRAK+R QE+
Sbjct: 38 QLHQLERAFEASHYPDIYSREELAAKVHLPEVRVQVWFQNRRAKWRHQER---------- 87
Query: 55 IPTCNGAMMRNIYPTTSRGYQPYPHPNTINRQHFVILVPGMST 97
+ + +GA+ + P P+ HP TI L PG T
Sbjct: 88 LESGSGAVAASRLPEAP--ALPFAHPPTIPLPLEPWLGPGPPT 128
>gi|332836398|ref|XP_521895.3| PREDICTED: LOW QUALITY PROTEIN: homeobox protein aristaless-like 4
[Pan troglodytes]
Length = 410
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 224 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 282
>gi|258503877|gb|ACV72675.1| UNC-4 [Caenorhabditis remanei]
gi|258503881|gb|ACV72677.1| UNC-4 [Caenorhabditis remanei]
Length = 223
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE+AF SHYPD++ RE LA+ QVWFQNRRAK+RK+E+ P
Sbjct: 90 QLEELESAFEASHYPDVFMREALAMRLDLLESRVQVWFQNRRAKWRKREQNRHGGSEPKK 149
Query: 55 IPTCNGAMM 63
+G MM
Sbjct: 150 --DADGVMM 156
>gi|270011563|gb|EFA08011.1| hypothetical protein TcasGA2_TC005600 [Tribolium castaneum]
Length = 327
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE+AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 61 QQLEELESAFAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKAER 111
>gi|15625548|gb|AAL04156.1|AF411465_1 transcription factor Pax7 [Petromyzon marinus]
Length = 505
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 48/94 (51%), Gaps = 19/94 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 220 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 279
Query: 54 VIPTCNGAMMRNIYPTTSRGYQPY-----PHPNT 82
+IP P + G PY P+P +
Sbjct: 280 LIPG-------GFPPASMPGLPPYQLPEGPYPGS 306
>gi|260836889|ref|XP_002613438.1| hypothetical protein BRAFLDRAFT_84563 [Branchiostoma floridae]
gi|229298823|gb|EEN69447.1| hypothetical protein BRAFLDRAFT_84563 [Branchiostoma floridae]
Length = 300
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 56/110 (50%), Gaps = 26/110 (23%)
Query: 20 CREELAILFQVWFQNRRAKYRKQEKQLQKALTPSVIPTCNGAMMRNIYPTTSRGYQPYPH 79
C L QVWFQNRRAKY Q+Q A + P ++ PTT+ G + H
Sbjct: 201 CNSCFRTLVQVWFQNRRAKY----PQMQMASSAYAPPP---MAQFSMPPTTNMGMRVEQH 253
Query: 80 PNTINRQHFVILVPGMSTEDEWYNKSLSA-LRMNSSHHSNLATPMLQYQT 128
+D+WYNKSL+A LRMN SHH NL+ P+LQYQT
Sbjct: 254 ------------------DDDWYNKSLTAALRMNPSHHPNLSAPVLQYQT 285
>gi|37748754|gb|AAH59574.1| Vsx1 protein [Danio rerio]
Length = 340
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 162 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 218
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 219 MAEYGLYGAMVRHSIP 234
>gi|2209139|gb|AAC24601.1| paired-like homeobox protein [Carassius auratus]
Length = 305
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 110 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 166
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 167 MAEYGLYGAMVRHSIP 182
>gi|348523387|ref|XP_003449205.1| PREDICTED: ALX homeobox protein 1-like isoform 1 [Oreochromis
niloticus]
Length = 323
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 135 QLEELEKVFQKTHYPDVYVREQLAMRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 191
>gi|348523389|ref|XP_003449206.1| PREDICTED: ALX homeobox protein 1-like isoform 2 [Oreochromis
niloticus]
Length = 318
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 130 QLEELEKVFQKTHYPDVYVREQLAMRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 186
>gi|332211111|ref|XP_003254659.1| PREDICTED: paired box protein Pax-6 [Nomascus leucogenys]
Length = 458
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 256 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 315
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 316 NTPSHIP------ISSSFSTSV--YQPIPQPTT 340
>gi|194217845|ref|XP_001915219.1| PREDICTED: hypothetical protein LOC100055958 [Equus caballus]
Length = 608
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 422 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 480
>gi|154147573|ref|NP_001093670.1| visual system homeobox 1 [Xenopus (Silurana) tropicalis]
gi|134254267|gb|AAI35614.1| vsx1 protein [Xenopus (Silurana) tropicalis]
Length = 344
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 161 QLEELEKAFNEAHYPDVYAREMLALKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 217
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 218 MAEYGLYGAMVRHSIP 233
>gi|395507743|ref|XP_003758180.1| PREDICTED: visual system homeobox 1 [Sarcophilus harrisii]
Length = 346
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 182 QLEELEKAFNEAHYPDVYAREMLALKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 238
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 239 MAEYGLYGAMVRHSIP 254
>gi|444732073|gb|ELW72394.1| Paired box protein Pax-6 [Tupaia chinensis]
Length = 601
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|397473637|ref|XP_003808312.1| PREDICTED: homeobox protein aristaless-like 4 [Pan paniscus]
Length = 424
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 238 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 296
>gi|301604045|ref|XP_002931669.1| PREDICTED: ALX homeobox protein 1-like [Xenopus (Silurana)
tropicalis]
Length = 326
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|357611334|gb|EHJ67427.1| hypothetical protein KGM_16069 [Danaus plexippus]
Length = 432
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 164 QQLEELETAFAQTHYPDVFTREDLALKINLTEARVQVWFQNRRAKWRKAER 214
>gi|346644870|ref|NP_001231107.1| paired box protein Pax-6 isoform 2 [Sus scrofa]
Length = 355
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 153 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 212
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 213 NTPSHIP------ISSSFSTSV--YQPIPQPTT 237
>gi|344257015|gb|EGW13119.1| Homeobox protein aristaless-like 4 [Cricetulus griseus]
Length = 237
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 51 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 109
>gi|326915060|ref|XP_003203839.1| PREDICTED: visual system homeobox 1-like [Meleagris gallopavo]
Length = 205
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 24 QLEELEKAFNEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 80
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 81 MAEYGLYGAMVRHSIP 96
>gi|325980252|gb|ADZ48385.1| Pax3 [Polyodon spathula]
Length = 285
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 46/88 (52%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQ------ 47
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q
Sbjct: 134 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNH 193
Query: 48 ---KALTPSVIPTCNGAMMRNI-YPTTS 71
PS +PT + + YP TS
Sbjct: 194 LIPGGFPPSAMPTLQPYQLSDSPYPPTS 221
>gi|258503883|gb|ACV72678.1| UNC-4 [Caenorhabditis remanei]
gi|258503887|gb|ACV72680.1| UNC-4 [Caenorhabditis remanei]
gi|258503889|gb|ACV72681.1| UNC-4 [Caenorhabditis remanei]
gi|258503893|gb|ACV72683.1| UNC-4 [Caenorhabditis remanei]
Length = 223
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE+AF SHYPD++ RE LA+ QVWFQNRRAK+RK+E+ P
Sbjct: 90 QLEELESAFEASHYPDVFMREALAMRLDLLESRVQVWFQNRRAKWRKREQNRHGGSEPKK 149
Query: 55 IPTCNGAMM 63
+G MM
Sbjct: 150 --DADGVMM 156
>gi|115501613|gb|ABI98854.1| paired box 6 transcript variant 9 [Columba livia]
Length = 369
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 167 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 226
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 227 NTPSHIP------ISSSFSTSV--YQPIPQPTT 251
>gi|444515967|gb|ELV11025.1| Homeobox protein unc-4 like protein [Tupaia chinensis]
Length = 302
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 10/72 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTP-- 52
QL ELE AF++SHYPD++ RE LA+ QVWFQNRRAK+RK+E + P
Sbjct: 28 QLEELEKAFSESHYPDVFMREALALRLDLVESRVQVWFQNRRAKWRKKENTKKGPGRPAH 87
Query: 53 -SVIPTCNGAMM 63
S TC+G M
Sbjct: 88 NSHPTTCSGEPM 99
>gi|5758937|gb|AAD50902.1|AF169413_1 paired-box transcription factor +- isoform, partial [Ambystoma
mexicanum]
Length = 404
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 232 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 291
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 292 NTPSHIP------ISSSFSTSV--YQPIPQPTT 316
>gi|1352719|sp|P47237.1|PAX6_CHICK RecName: Full=Paired box protein Pax-6
gi|545839|gb|AAB30163.1| transcription factor [Gallus gallus]
Length = 216
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 20 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 79
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + ++ YQP P P T
Sbjct: 80 NTPSHIPISSSF--------STSVYQPIPQPTT 104
>gi|313234390|emb|CBY24589.1| unnamed protein product [Oikopleura dioica]
Length = 279
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQK-ALTP 52
+QL LE+AFAK+ YPDIY REELA QVWFQNRRAK+RK ++Q+ +L
Sbjct: 102 DQLNLLESAFAKTQYPDIYYREELASRTKLTEARIQVWFQNRRAKFRKVQRQMMAVSLNS 161
Query: 53 SVIPTCNGAMMRNIYPTT 70
S P + R PT+
Sbjct: 162 SSSPLGAHSATRPQIPTS 179
>gi|56694800|gb|AAW23062.1| Prop-b [Oikopleura dioica]
Length = 306
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQK-ALTP 52
+QL LE+AFAK+ YPDIY REELA QVWFQNRRAK+RK ++Q+ +L
Sbjct: 129 DQLNLLESAFAKTQYPDIYYREELASRTKLTEARIQVWFQNRRAKFRKVQRQMMAVSLNS 188
Query: 53 SVIPTCNGAMMRNIYPTT 70
S P + R PT+
Sbjct: 189 SSSPLGAHSATRPQIPTS 206
>gi|306754627|gb|ADN04686.1| Pax6 [Rattus norvegicus]
Length = 434
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|124111346|gb|ABM92080.1| ALX4 [Pan troglodytes]
Length = 255
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 69 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 127
>gi|18859553|ref|NP_571408.1| visual system homeobox 1 [Danio rerio]
gi|25009566|sp|O42250.2|VSX1_DANRE RecName: Full=Visual system homeobox 1; AltName: Full=Transcription
factor VSX1
gi|7159413|gb|AAB71611.2| paired-like homeobox protein [Danio rerio]
Length = 344
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 162 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 218
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 219 MAEYGLYGAMVRHSIP 234
>gi|328703933|ref|XP_001942790.2| PREDICTED: diencephalon/mesencephalon homeobox protein 1-B-like
[Acyrthosiphon pisum]
Length = 408
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE AFA++HYPD++ RE+LA QVWFQNRRAK+RK E+
Sbjct: 61 QQLEELETAFAQTHYPDVFTREDLAAKIQLTEARVQVWFQNRRAKWRKAER 111
>gi|281350934|gb|EFB26518.1| hypothetical protein PANDA_005849 [Ailuropoda melanoleuca]
Length = 434
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 232 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 291
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 292 NTPSHIP------ISSSFSTSV--YQPIPQPTT 316
>gi|115501675|gb|ABI98885.1| paired box 6 transcript variant 40 [Columba livia]
Length = 215
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 19 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 78
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + ++ YQP P P T
Sbjct: 79 NTPSHIPISSSF--------STSVYQPIPQPTT 103
>gi|115501605|gb|ABI98850.1| paired box 6 transcript variant 5 [Columba livia]
Length = 400
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 198 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 257
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 258 NTPSHIP------ISSSFSTSV--YQPIPQPTT 282
>gi|5758941|gb|AAD50904.1|AF169415_1 paired-box transcription factor -- isoform, partial [Ambystoma
mexicanum]
Length = 390
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 218 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 277
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 278 NTPSHIP------ISSSFSTSV--YQPIPQPTT 302
>gi|440910049|gb|ELR59881.1| Paired box protein Pax-6, partial [Bos grunniens mutus]
Length = 436
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|395543615|ref|XP_003773712.1| PREDICTED: LOW QUALITY PROTEIN: paired box protein Pax-6
[Sarcophilus harrisii]
Length = 484
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 282 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 341
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 342 NTPSHIP------ISSSFSTSV--YQPIPQPTT 366
>gi|355752241|gb|EHH56361.1| hypothetical protein EGM_05752, partial [Macaca fascicularis]
Length = 436
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|344245472|gb|EGW01576.1| Paired box protein Pax-6 [Cricetulus griseus]
Length = 544
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 316 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 375
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 376 NTPSHIP------ISSSFSTSV--YQPIPQPTT 400
>gi|334312715|ref|XP_003339770.1| PREDICTED: visual system homeobox 1-like [Monodelphis domestica]
Length = 348
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 183 QLEELEKAFNEAHYPDVYAREMLALKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 239
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 240 MAEYGLYGAMVRHSIP 255
>gi|325973715|emb|CBX88048.1| Pax6 transcription factor [Scyliorhinus canicula]
Length = 497
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 295 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 354
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 355 NTPSHIP------ISSSFSTSV--YQPIPQPTT 379
>gi|313224351|emb|CBY20140.1| unnamed protein product [Oikopleura dioica]
Length = 291
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 7/53 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQ 47
QL ELE F ++HYPD++ REELA QVWFQNRRAK+RK+EK ++
Sbjct: 137 QLEELENTFVRTHYPDVFTREELAARIDLTEARVQVWFQNRRAKWRKREKHVK 189
>gi|115501607|gb|ABI98851.1| paired box 6 transcript variant 6 [Columba livia]
Length = 394
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 198 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 257
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 258 NTPSHIP------ISSSFSTSV--YQPIPQPTT 282
>gi|113682307|ref|NP_001038539.1| ALX homeobox protein 1 [Danio rerio]
gi|94732446|emb|CAK11128.1| novel protein similar to vertebrate cartilage paired-class
homeoprotein 1 (CART1) [Danio rerio]
Length = 320
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 131 QLEELEKVFQKTHYPDVYVREQLAMRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 187
>gi|432868791|ref|XP_004071635.1| PREDICTED: homeobox protein unc-4 homolog [Oryzias latipes]
Length = 351
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 17/79 (21%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF +SHYPD++ RE LA+ QVWFQNRRAK+RK+E + P+
Sbjct: 111 QLEELEKAFNESHYPDVFMREALALRLDLIESRVQVWFQNRRAKWRKKENTKKGPGRPA- 169
Query: 55 IPTCNGAMMRNIYPTTSRG 73
N +PTT G
Sbjct: 170 ---------HNAHPTTCSG 179
>gi|34364871|emb|CAE45868.1| hypothetical protein [Homo sapiens]
Length = 436
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|402893913|ref|XP_003910125.1| PREDICTED: paired box protein Pax-6 isoform 4 [Papio anubis]
gi|402893915|ref|XP_003910126.1| PREDICTED: paired box protein Pax-6 isoform 5 [Papio anubis]
gi|402893919|ref|XP_003910128.1| PREDICTED: paired box protein Pax-6 isoform 7 [Papio anubis]
gi|402893921|ref|XP_003910129.1| PREDICTED: paired box protein Pax-6 isoform 8 [Papio anubis]
Length = 436
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|148695801|gb|EDL27748.1| paired box gene 6, isoform CRA_d [Mus musculus]
Length = 499
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 297 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 356
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 357 NTPSHIP------ISSSFSTSV--YQPIPQPTT 381
>gi|38146909|gb|AAR11849.1| Pitx-1 [Gasterosteus aculeatus]
Length = 173
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 16/104 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALT-PS 53
QL ELEA F ++ YPD+ REE+A+ +VWF+NRRAK+RK+E+ LQ L S
Sbjct: 3 QLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNLQMDLCKSS 62
Query: 54 VIPTCNGAMM--RNIYPTTSRGYQPYPH----PNTINRQHFVIL 91
+P +G M ++YPT S Y +P+ P ++ ++F
Sbjct: 63 YLPKFSGLMQPYEDMYPTYS--YNNWPNKGLAPAPLSSKNFTFF 104
>gi|444728104|gb|ELW68568.1| Paired box protein Pax-7 [Tupaia chinensis]
Length = 486
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 208 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 267
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 268 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 295
>gi|431896467|gb|ELK05879.1| Homeobox protein aristaless-like 3 [Pteropus alecto]
Length = 315
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 18/90 (20%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 132 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP 191
Query: 53 -------SVIPTCNG--AMMRNIYPTTSRG 73
SV+P + + +++P+ G
Sbjct: 192 FTSAYDISVLPRTDSHPQLQNSLWPSPGSG 221
>gi|73987445|ref|XP_854816.1| PREDICTED: retina and anterior neural fold homeobox protein 2
[Canis lupus familiaris]
Length = 184
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 40/62 (64%), Gaps = 8/62 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL +LE AF SHYPD+Y REELA + QVWFQNRRAK+R+QE+ L+ P
Sbjct: 38 QLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER-LESGSGPVA 96
Query: 55 IP 56
P
Sbjct: 97 AP 98
>gi|332237569|ref|XP_003267978.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein aristaless-like 3
[Nomascus leucogenys]
Length = 343
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 164 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQRGXDP 223
>gi|327259829|ref|XP_003214738.1| PREDICTED: paired box protein Pax-6-like isoform 4 [Anolis
carolinensis]
Length = 400
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 198 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 257
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 258 NTPSHIP------ISSSFSTSV--YQPIPQPTT 282
>gi|115501617|gb|ABI98856.1| paired box 6 transcript variant 11 [Columba livia]
Length = 355
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 153 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 212
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 213 NTPSHIP------ISSSFSTSV--YQPIPQPTT 237
>gi|5758935|gb|AAD50901.1|AF169412_1 paired-box transcription factor ++ isoform, partial [Ambystoma
mexicanum]
Length = 433
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 232 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 291
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 292 NTPSHIP------ISSSFSTSV--YQPIPQPTT 316
>gi|295855150|gb|ADG46024.1| Vsx1 A2 [Carassius auratus]
gi|316936358|gb|ADU60208.1| vsx1A2 [Carassius auratus]
Length = 340
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 162 QLEELEKAFHEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 218
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 219 MAEYGLYGAMVRHSIP 234
>gi|148222721|ref|NP_001091013.1| paired box gene 6 [Canis lupus familiaris]
gi|344281158|ref|XP_003412347.1| PREDICTED: paired box protein Pax-6-like isoform 2 [Loxodonta
africana]
gi|426245242|ref|XP_004016422.1| PREDICTED: paired box protein Pax-6 isoform 5 [Ovis aries]
gi|426245244|ref|XP_004016423.1| PREDICTED: paired box protein Pax-6 isoform 6 [Ovis aries]
gi|426245246|ref|XP_004016424.1| PREDICTED: paired box protein Pax-6 isoform 7 [Ovis aries]
gi|426245248|ref|XP_004016425.1| PREDICTED: paired box protein Pax-6 isoform 8 [Ovis aries]
gi|134289886|gb|ABO70134.1| PAX6 [Canis lupus familiaris]
Length = 436
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|4580424|ref|NP_001595.2| paired box protein Pax-6 isoform b [Homo sapiens]
gi|386642911|ref|NP_001245391.1| paired box protein Pax-6 isoform b [Homo sapiens]
gi|386642913|ref|NP_001245392.1| paired box protein Pax-6 isoform b [Homo sapiens]
gi|301764208|ref|XP_002917525.1| PREDICTED: paired box protein Pax-6-like [Ailuropoda melanoleuca]
gi|390470364|ref|XP_002755188.2| PREDICTED: paired box protein Pax-6 isoform 1 [Callithrix jacchus]
gi|390470366|ref|XP_003734277.1| PREDICTED: paired box protein Pax-6 [Callithrix jacchus]
gi|390470368|ref|XP_003734278.1| PREDICTED: paired box protein Pax-6 [Callithrix jacchus]
gi|397520715|ref|XP_003830457.1| PREDICTED: paired box protein Pax-6 isoform 4 [Pan paniscus]
gi|397520717|ref|XP_003830458.1| PREDICTED: paired box protein Pax-6 isoform 5 [Pan paniscus]
gi|397520719|ref|XP_003830459.1| PREDICTED: paired box protein Pax-6 isoform 6 [Pan paniscus]
gi|403254508|ref|XP_003920007.1| PREDICTED: paired box protein Pax-6 isoform 4 [Saimiri boliviensis
boliviensis]
gi|403254510|ref|XP_003920008.1| PREDICTED: paired box protein Pax-6 isoform 5 [Saimiri boliviensis
boliviensis]
gi|403254512|ref|XP_003920009.1| PREDICTED: paired box protein Pax-6 isoform 6 [Saimiri boliviensis
boliviensis]
gi|410973488|ref|XP_003993181.1| PREDICTED: paired box protein Pax-6 isoform 4 [Felis catus]
gi|410973490|ref|XP_003993182.1| PREDICTED: paired box protein Pax-6 isoform 5 [Felis catus]
gi|410973492|ref|XP_003993183.1| PREDICTED: paired box protein Pax-6 isoform 6 [Felis catus]
gi|410973494|ref|XP_003993184.1| PREDICTED: paired box protein Pax-6 isoform 7 [Felis catus]
gi|426367844|ref|XP_004050931.1| PREDICTED: paired box protein Pax-6 isoform 4 [Gorilla gorilla
gorilla]
gi|426367846|ref|XP_004050932.1| PREDICTED: paired box protein Pax-6 isoform 5 [Gorilla gorilla
gorilla]
gi|426367850|ref|XP_004050934.1| PREDICTED: paired box protein Pax-6 isoform 7 [Gorilla gorilla
gorilla]
gi|326205307|dbj|BAJ84032.1| paired box protein Pax-6 [Homo sapiens]
gi|326205309|dbj|BAJ84033.1| paired box protein Pax-6 [Homo sapiens]
gi|326205311|dbj|BAJ84034.1| paired box protein Pax-6 [Homo sapiens]
gi|380813236|gb|AFE78492.1| paired box protein Pax-6 isoform b [Macaca mulatta]
Length = 436
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|8132381|gb|AAF73270.1| paired domain transcription factor variant B [Xenopus laevis]
Length = 390
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|7305369|ref|NP_038655.1| paired box protein Pax-6 isoform 1 [Mus musculus]
gi|346644677|ref|NP_001231127.1| paired box protein Pax-6 isoform 1 [Mus musculus]
gi|346644705|ref|NP_001231129.1| paired box protein Pax-6 isoform 1 [Mus musculus]
gi|354470765|ref|XP_003497615.1| PREDICTED: paired box protein Pax-6 isoform 2 [Cricetulus griseus]
gi|1405744|emb|CAA45379.1| Pax-6 (paired box containing gene) [Mus musculus]
gi|15277449|gb|AAH11272.1| Paired box gene 6 [Mus musculus]
gi|18138034|emb|CAC80519.1| paired box protein [Mus musculus]
gi|148695799|gb|EDL27746.1| paired box gene 6, isoform CRA_b [Mus musculus]
gi|148695802|gb|EDL27749.1| paired box gene 6, isoform CRA_b [Mus musculus]
Length = 436
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|225903375|ref|NP_001139621.1| paired box gene 7b [Danio rerio]
gi|225355242|gb|ACN88553.1| paired box protein 7b [Danio rerio]
Length = 510
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 65/134 (48%), Gaps = 22/134 (16%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 233 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 292
Query: 46 -LQKALTPSVIPTCNGAMM-RNIYPTTSRGYQPYPHPNTINRQHFVILVPGMSTEDEWYN 103
L P+ +PT + + YPTT+ P T++R L P + +
Sbjct: 293 LLPGGFPPTGMPTLPTYQLPESSYPTTT---LPQDVSGTVHRPQ--PLPPSTMHQGGLSS 347
Query: 104 KSLSALRMNSSHHS 117
S SA ++S+ HS
Sbjct: 348 DSSSAYGLSSNRHS 361
>gi|44922124|gb|AAS48919.1| paired box 6 isoform 5a [Rattus norvegicus]
gi|44922126|gb|AAS48920.1| paired box 6 isoform 5a [Rattus norvegicus]
Length = 436
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|1685047|gb|AAB36681.1| paired-type homeodomain Pax-6 protein [Xenopus laevis]
Length = 453
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 251 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 310
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 311 NTPSHIP------ISSSFSTSV--YQPIPQPTT 335
>gi|8132387|gb|AAF73273.1|AF154557_1 paired domain transcription factor variant B [Xenopus laevis]
Length = 393
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|74224022|dbj|BAE23875.1| unnamed protein product [Mus musculus]
gi|119588641|gb|EAW68235.1| paired box gene 6 (aniridia, keratitis), isoform CRA_b [Homo
sapiens]
Length = 286
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 84 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 143
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + ++ YQP P P T
Sbjct: 144 NTPSHIPISSSF--------STSVYQPIPQPTT 168
>gi|2696971|dbj|BAA24024.1| PAX6 LL [Cynops pyrrhogaster]
Length = 452
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 251 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 310
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 311 NTPSHIP------ISSSFSTSV--YQPIPQPTT 335
>gi|327259831|ref|XP_003214739.1| PREDICTED: paired box protein Pax-6-like isoform 5 [Anolis
carolinensis]
Length = 369
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 167 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 226
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 227 NTPSHIP------ISSSFSTSV--YQPIPQPTT 251
>gi|284005045|ref|NP_001164685.1| aristaless homeodomain transcription factor [Saccoglossus
kowalevskii]
gi|283462198|gb|ADB22393.1| aristaless homeodomain transcription factor [Saccoglossus
kowalevskii]
Length = 256
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 10/66 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL E+E F ++HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q + P
Sbjct: 116 QLDEMEKVFQRTHYPDVYSREQLALRCDLTEARVQVWFQNRRAKWRKRERFGQLPVRP-- 173
Query: 55 IPTCNG 60
P NG
Sbjct: 174 -PGING 178
>gi|348557450|ref|XP_003464532.1| PREDICTED: paired box protein Pax-6-like isoform 2 [Cavia
porcellus]
Length = 436
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|219660952|gb|ACL30968.1| visual system homeobox [Carassius auratus]
gi|229424351|gb|ACQ63564.1| transcription factor VSX1 [Carassius auratus]
Length = 344
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 162 QLEELEKAFHEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 218
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 219 MAEYGLYGAMVRHSIP 234
>gi|115501615|gb|ABI98855.1| paired box 6 transcript variant 10 [Columba livia]
Length = 363
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 167 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 226
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 227 NTPSHIP------ISSSFSTSV--YQPIPQPTT 251
>gi|84380301|gb|ABC58683.1| EBX transcription factor [Capitella teleta]
Length = 355
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 7/54 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
QL +LE AF K+ YPD++ REELA+ QVWFQNRRAK+RK+EK L +
Sbjct: 139 QLHQLERAFEKTQYPDVFTREELALRLDHSEARVQVWFQNRRAKWRKREKMLGR 192
>gi|291231892|ref|XP_002735897.1| PREDICTED: aristaless homeodomain transcription factor-like
[Saccoglossus kowalevskii]
Length = 236
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 10/66 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL E+E F ++HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q + P
Sbjct: 116 QLDEMEKVFQRTHYPDVYSREQLALRCDLTEARVQVWFQNRRAKWRKRERFGQLPVRP-- 173
Query: 55 IPTCNG 60
P NG
Sbjct: 174 -PGING 178
>gi|115501611|gb|ABI98853.1| paired box 6 transcript variant 8 [Columba livia]
Length = 380
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 184 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 243
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 244 NTPSHIP------ISSSFSTSV--YQPIPQPTT 268
>gi|115501609|gb|ABI98852.1| paired box 6 transcript variant 7 [Columba livia]
Length = 386
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 184 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 243
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 244 NTPSHIP------ISSSFSTSV--YQPIPQPTT 268
>gi|121484123|gb|ABM54404.1| ALX4 [Pan paniscus]
Length = 146
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 69 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 127
>gi|443692131|gb|ELT93804.1| hypothetical protein CAPTEDRAFT_169576 [Capitella teleta]
Length = 355
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 7/54 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
QL +LE AF K+ YPD++ REELA+ QVWFQNRRAK+RK+EK L +
Sbjct: 139 QLHQLERAFEKTQYPDVFTREELALRLDLSEARVQVWFQNRRAKWRKREKMLGR 192
>gi|8132377|gb|AAF73268.1|AF154552_1 paired domain transcription factor variant B [Xenopus laevis]
Length = 393
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|410045098|ref|XP_003954413.1| PREDICTED: LOW QUALITY PROTEIN: paired box protein Pax-6 [Pan
troglodytes]
Length = 430
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 228 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 287
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 288 NTPSHIP------ISSSFSTSV--YQPIPQPTT 312
>gi|301618086|ref|XP_002938457.1| PREDICTED: homeobox protein unc-4 homolog [Xenopus (Silurana)
tropicalis]
Length = 483
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 10/72 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTP-- 52
QL ELE AF +SHYPD++ RE LA+ QVWFQNRRAK+RK+E + P
Sbjct: 112 QLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQNRRAKWRKKENTKKGPGRPAH 171
Query: 53 -SVIPTCNGAMM 63
S TC+G M
Sbjct: 172 NSHPTTCSGEPM 183
>gi|260831142|ref|XP_002610518.1| hypothetical protein BRAFLDRAFT_177535 [Branchiostoma floridae]
gi|229295885|gb|EEN66528.1| hypothetical protein BRAFLDRAFT_177535 [Branchiostoma floridae]
Length = 106
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 8 QLEELEKAFNEAHYPDVYAREMLAMKTDLPEDRIQVWFQNRRAKWRKKEKTWGRS---SV 64
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 65 MAEYGLYGAMVRHSLP 80
>gi|148222787|ref|NP_001079413.1| paired box 6 [Xenopus laevis]
gi|27469846|gb|AAH41712.1| MGC52531 protein [Xenopus laevis]
Length = 453
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 251 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 310
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 311 NTPSHIP------ISSSFSTSV--YQPIPQPTT 335
>gi|5758939|gb|AAD50903.1|AF169414_1 paired-box transcription factor -+ isoform, partial [Ambystoma
mexicanum]
Length = 419
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 218 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 277
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 278 NTPSHIP------ISSSFSTSV--YQPIPQPTT 302
>gi|126723718|ref|NP_001075686.1| paired box protein Pax-6 [Oryctolagus cuniculus]
gi|77547037|gb|ABA90485.1| paired box protein PAX6 isoform b [Oryctolagus cuniculus]
Length = 436
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|405961985|gb|EKC27709.1| Homeobox protein ARX [Crassostrea gigas]
Length = 442
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 8/74 (10%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL +LE AF K+ YPD++ REELA+ QVWFQNRRAK+RK+EK + + +P+
Sbjct: 121 QLHQLERAFEKTQYPDVFTREELAMRLDLSEARVQVWFQNRRAKWRKREKAMGRE-SPNF 179
Query: 55 IPTCNGAMMRNIYP 68
+ + + + + ++ P
Sbjct: 180 LQSDSASGLGDVAP 193
>gi|316936360|gb|ADU60209.1| vsx2 [Carassius auratus]
Length = 371
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 176 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 232
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 233 MAEYGLYGAMVRHSIP 248
>gi|288557282|ref|NP_001165666.1| paired box protein Pax-6 [Xenopus laevis]
gi|8132379|gb|AAF73269.1|AF154553_1 paired domain transcription factor variant B [Xenopus laevis]
Length = 393
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|42592306|emb|CAF29075.1| putative pax6 isoform 5a [Rattus norvegicus]
Length = 436
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|358337692|dbj|GAA56038.1| homeobox protein SMOX-3 [Clonorchis sinensis]
Length = 1388
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 5/51 (9%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-----QVWFQNRRAKYRKQEKQLQ 47
QL ELE AF ++HYPDIY RE++A+ +VWFQNRRAK+RK E+ +Q
Sbjct: 1132 QLKELERAFQETHYPDIYTREDIALRIDLTEARVWFQNRRAKFRKLERSVQ 1182
>gi|297275793|ref|XP_002801073.1| PREDICTED: retina and anterior neural fold homeobox protein 2-like
[Macaca mulatta]
gi|402903739|ref|XP_003914716.1| PREDICTED: retina and anterior neural fold homeobox protein 2
[Papio anubis]
Length = 230
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF SHYPD+Y REELA + QVWFQNRRAK+R+QE+
Sbjct: 84 QLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER 133
>gi|195480036|ref|XP_002101113.1| GE17435 [Drosophila yakuba]
gi|194188637|gb|EDX02221.1| GE17435 [Drosophila yakuba]
Length = 264
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELEA F K+HYPD++ REE+A+ QVWFQNRRAK+RKQ +
Sbjct: 34 QQLQELEALFQKTHYPDVFLREEVALRISLSEARVQVWFQNRRAKWRKQAR 84
>gi|115501619|gb|ABI98857.1| paired box 6 transcript variant 12 [Columba livia]
Length = 349
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 153 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 212
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 213 NTPSHIP------ISSSFSTSV--YQPIPQPTT 237
>gi|6981334|ref|NP_037133.1| paired box protein Pax-6 [Rattus norvegicus]
gi|51704214|sp|P63016.1|PAX6_RAT RecName: Full=Paired box protein Pax-6; AltName: Full=Oculorhombin
gi|1568653|gb|AAB09042.1| paired-box/homeobox protein [Rattus norvegicus]
gi|118764376|gb|AAI28742.1| Paired box 6 [Rattus norvegicus]
Length = 422
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|26389393|dbj|BAC25729.1| unnamed protein product [Mus musculus]
Length = 422
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|149022829|gb|EDL79723.1| paired box gene 6, isoform CRA_c [Rattus norvegicus]
gi|149022831|gb|EDL79725.1| paired box gene 6, isoform CRA_c [Rattus norvegicus]
Length = 470
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 268 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 327
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 328 NTPSHIP------ISSSFSTSV--YQPIPQPTT 352
>gi|122892625|gb|ABM67377.1| ALX4 [Hylobates klossii]
Length = 144
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 67 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 125
>gi|33416571|gb|AAH55588.1| Vsx2 protein [Danio rerio]
gi|182891268|gb|AAI64202.1| Vsx2 protein [Danio rerio]
Length = 372
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 176 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 232
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 233 MAEYGLYGAMVRHSIP 248
>gi|189353|gb|AAA59962.1| oculorhombin [Homo sapiens]
Length = 422
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|62183710|gb|AAX73253.1| Uncx4.1 [Danio rerio]
Length = 470
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 17/79 (21%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF +SHYPD++ RE LA+ QVWFQNRRAK+RK+E + P+
Sbjct: 112 QLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQNRRAKWRKKENTKKGPGRPA- 170
Query: 55 IPTCNGAMMRNIYPTTSRG 73
N +PTT G
Sbjct: 171 ---------HNSHPTTCSG 180
>gi|45384210|ref|NP_990397.1| paired box protein Pax-6 [Gallus gallus]
gi|2576237|dbj|BAA23004.1| PAX6 protein [Gallus gallus]
gi|115501595|gb|ABI98845.1| paired box 6 [Columba livia]
gi|115501597|gb|ABI98846.1| paired box 6 transcript variant 1 [Columba livia]
Length = 436
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|327259825|ref|XP_003214736.1| PREDICTED: paired box protein Pax-6-like isoform 2 [Anolis
carolinensis]
Length = 386
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 184 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 243
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 244 NTPSHIP------ISSSFSTSV--YQPIPQPTT 268
>gi|308472155|ref|XP_003098306.1| CRE-UNC-4 protein [Caenorhabditis remanei]
gi|308269154|gb|EFP13107.1| CRE-UNC-4 protein [Caenorhabditis remanei]
Length = 249
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE+AF SHYPD++ RE LA+ QVWFQNRRAK+RK+E+ P
Sbjct: 98 QLEELESAFEASHYPDVFMREALAMRLDLLESRVQVWFQNRRAKWRKREQNRHGGSEPK- 156
Query: 55 IPTCNGAMM 63
+G MM
Sbjct: 157 -KDADGVMM 164
>gi|350583559|ref|XP_003125909.3| PREDICTED: homeobox protein aristaless-like 3-like [Sus scrofa]
Length = 448
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 269 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP 328
>gi|207113487|gb|ACI23462.1| Pax6 variant [Pseudepidalea raddei]
Length = 393
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|193786700|dbj|BAG52023.1| unnamed protein product [Homo sapiens]
Length = 422
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|115501599|gb|ABI98847.1| paired box 6 transcript variant 2 [Columba livia]
Length = 430
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|115501621|gb|ABI98858.1| paired box 6 transcript variant 13 [Columba livia]
gi|115501625|gb|ABI98860.1| paired box 6 transcript variant 15 [Columba livia]
gi|115501629|gb|ABI98862.1| paired box 6 transcript variant 17 [Columba livia]
gi|115501633|gb|ABI98864.1| paired box 6 transcript variant 19 [Columba livia]
gi|115501637|gb|ABI98866.1| paired box 6 transcript variant 21 [Columba livia]
gi|115501641|gb|ABI98868.1| paired box 6 transcript variant 23 [Columba livia]
gi|115501645|gb|ABI98870.1| paired box 6 transcript variant 25 [Columba livia]
gi|115501649|gb|ABI98872.1| paired box 6 transcript variant 27 [Columba livia]
gi|115501653|gb|ABI98874.1| paired box 6 transcript variant 29 [Columba livia]
gi|115501657|gb|ABI98876.1| paired box 6 transcript variant 31 [Columba livia]
gi|115501661|gb|ABI98878.1| paired box 6 transcript variant 33 [Columba livia]
gi|115501665|gb|ABI98880.1| paired box 6 transcript variant 35 [Columba livia]
gi|115501669|gb|ABI98882.1| paired box 6 transcript variant 37 [Columba livia]
Length = 286
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 84 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 143
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + ++ YQP P P T
Sbjct: 144 NTPSHIPISSSF--------STSVYQPIPQPTT 168
>gi|115501601|gb|ABI98848.1| paired box 6 transcript variant 3 [Columba livia]
Length = 422
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|161333811|ref|NP_571537.2| visual system homeobox 2 [Danio rerio]
Length = 372
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 176 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 232
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 233 MAEYGLYGAMVRHSIP 248
>gi|99028934|ref|NP_001035735.1| paired box protein Pax-6 [Bos taurus]
gi|344281156|ref|XP_003412346.1| PREDICTED: paired box protein Pax-6-like isoform 1 [Loxodonta
africana]
gi|426245234|ref|XP_004016418.1| PREDICTED: paired box protein Pax-6 isoform 1 [Ovis aries]
gi|426245236|ref|XP_004016419.1| PREDICTED: paired box protein Pax-6 isoform 2 [Ovis aries]
gi|426245238|ref|XP_004016420.1| PREDICTED: paired box protein Pax-6 isoform 3 [Ovis aries]
gi|426245240|ref|XP_004016421.1| PREDICTED: paired box protein Pax-6 isoform 4 [Ovis aries]
gi|119390857|sp|Q1LZF1.1|PAX6_BOVIN RecName: Full=Paired box protein Pax-6; AltName: Full=Oculorhombin
gi|94534889|gb|AAI16039.1| Paired box 6 [Bos taurus]
gi|296479736|tpg|DAA21851.1| TPA: paired box protein Pax-6 [Bos taurus]
Length = 422
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|440897881|gb|ELR49486.1| Homeobox protein aristaless-like 4, partial [Bos grunniens mutus]
Length = 385
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 199 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 257
>gi|383296|prf||1902328A PAX6 gene
Length = 422
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|151564048|gb|ABS17534.1| PAX6 [Pseudepidalea raddei]
Length = 422
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|52353979|gb|AAU44354.1| transcription factor VSX1 [Carassius auratus]
Length = 344
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 162 QLEELEKAFHEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 218
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 219 MAEYGLYGAMVRHSIP 234
>gi|45767814|gb|AAH67664.1| Vsx2 protein [Danio rerio]
Length = 372
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 176 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 232
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 233 MAEYGLYGAMVRHSIP 248
>gi|4505615|ref|NP_000271.1| paired box protein Pax-6 isoform a [Homo sapiens]
gi|189083681|ref|NP_001121084.1| paired box protein Pax-6 isoform a [Homo sapiens]
gi|346644712|ref|NP_001231130.1| paired box protein Pax-6 isoform 2 [Mus musculus]
gi|346644716|ref|NP_001231131.1| paired box protein Pax-6 isoform 2 [Mus musculus]
gi|346644858|ref|NP_001231101.1| paired box protein Pax-6 isoform 1 [Sus scrofa]
gi|346644860|ref|NP_001231102.1| paired box protein Pax-6 isoform 1 [Sus scrofa]
gi|386642915|ref|NP_001245393.1| paired box protein Pax-6 isoform a [Homo sapiens]
gi|386642917|ref|NP_001245394.1| paired box protein Pax-6 isoform a [Homo sapiens]
gi|388452718|ref|NP_001253186.1| paired box protein Pax-6 [Macaca mulatta]
gi|354470763|ref|XP_003497614.1| PREDICTED: paired box protein Pax-6 isoform 1 [Cricetulus griseus]
gi|390470358|ref|XP_003734275.1| PREDICTED: paired box protein Pax-6 [Callithrix jacchus]
gi|390470360|ref|XP_002755189.2| PREDICTED: paired box protein Pax-6 isoform 2 [Callithrix jacchus]
gi|390470362|ref|XP_003734276.1| PREDICTED: paired box protein Pax-6 [Callithrix jacchus]
gi|395815485|ref|XP_003781257.1| PREDICTED: paired box protein Pax-6 [Otolemur garnettii]
gi|397520709|ref|XP_003830454.1| PREDICTED: paired box protein Pax-6 isoform 1 [Pan paniscus]
gi|397520711|ref|XP_003830455.1| PREDICTED: paired box protein Pax-6 isoform 2 [Pan paniscus]
gi|397520713|ref|XP_003830456.1| PREDICTED: paired box protein Pax-6 isoform 3 [Pan paniscus]
gi|403254502|ref|XP_003920004.1| PREDICTED: paired box protein Pax-6 isoform 1 [Saimiri boliviensis
boliviensis]
gi|403254504|ref|XP_003920005.1| PREDICTED: paired box protein Pax-6 isoform 2 [Saimiri boliviensis
boliviensis]
gi|403254506|ref|XP_003920006.1| PREDICTED: paired box protein Pax-6 isoform 3 [Saimiri boliviensis
boliviensis]
gi|410973482|ref|XP_003993178.1| PREDICTED: paired box protein Pax-6 isoform 1 [Felis catus]
gi|410973484|ref|XP_003993179.1| PREDICTED: paired box protein Pax-6 isoform 2 [Felis catus]
gi|410973486|ref|XP_003993180.1| PREDICTED: paired box protein Pax-6 isoform 3 [Felis catus]
gi|426367838|ref|XP_004050928.1| PREDICTED: paired box protein Pax-6 isoform 1 [Gorilla gorilla
gorilla]
gi|426367840|ref|XP_004050929.1| PREDICTED: paired box protein Pax-6 isoform 2 [Gorilla gorilla
gorilla]
gi|426367842|ref|XP_004050930.1| PREDICTED: paired box protein Pax-6 isoform 3 [Gorilla gorilla
gorilla]
gi|426367848|ref|XP_004050933.1| PREDICTED: paired box protein Pax-6 isoform 6 [Gorilla gorilla
gorilla]
gi|6174889|sp|P26367.2|PAX6_HUMAN RecName: Full=Paired box protein Pax-6; AltName: Full=Aniridia type
II protein; AltName: Full=Oculorhombin
gi|51702790|sp|P63015.1|PAX6_MOUSE RecName: Full=Paired box protein Pax-6; AltName: Full=Oculorhombin
gi|189633|gb|AAA36416.1| paired-box protein [Homo sapiens]
gi|1405745|emb|CAA45380.1| Pax-6 (paired box containing gene) [Mus musculus]
gi|15080397|gb|AAH11953.1| Paired box 6 [Homo sapiens]
gi|15422113|gb|AAK95849.1| paired box protein PAX6 [Homo sapiens]
gi|22477504|gb|AAH36957.1| Pax6 protein [Mus musculus]
gi|51872083|gb|AAU12168.1| paired box gene 6 isoform a [Homo sapiens]
gi|90076866|dbj|BAE88113.1| unnamed protein product [Macaca fascicularis]
gi|123981066|gb|ABM82362.1| paired box gene 6 (aniridia, keratitis) [synthetic construct]
gi|123995873|gb|ABM85538.1| paired box gene 6 (aniridia, keratitis) [synthetic construct]
gi|148695798|gb|EDL27745.1| paired box gene 6, isoform CRA_a [Mus musculus]
gi|261860050|dbj|BAI46547.1| paired box 6 [synthetic construct]
gi|380813234|gb|AFE78491.1| paired box protein Pax-6 isoform a [Macaca mulatta]
Length = 422
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|432947060|ref|XP_004083922.1| PREDICTED: visual system homeobox 2-like [Oryzias latipes]
Length = 371
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE L+I QVWFQNRRAK+RK+EK ++ SV
Sbjct: 178 QLEELEKAFNEAHYPDVYAREMLSIKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 234
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 235 MAEYGLYGAMVRHSIP 250
>gi|402893907|ref|XP_003910122.1| PREDICTED: paired box protein Pax-6 isoform 1 [Papio anubis]
gi|402893909|ref|XP_003910123.1| PREDICTED: paired box protein Pax-6 isoform 2 [Papio anubis]
gi|402893911|ref|XP_003910124.1| PREDICTED: paired box protein Pax-6 isoform 3 [Papio anubis]
gi|402893917|ref|XP_003910127.1| PREDICTED: paired box protein Pax-6 isoform 6 [Papio anubis]
Length = 422
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|393907907|gb|EJD74822.1| hypothetical protein LOAG_17921 [Loa loa]
Length = 286
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 14/79 (17%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKAL--TP 52
QL ELE AF SHYPD++ RE LA+ QVWFQNRRAK+RK+E QL+K
Sbjct: 110 QLEELENAFEASHYPDVFMREALALRLDLLESRVQVWFQNRRAKWRKKE-QLRKGAQRVQ 168
Query: 53 SVIPTCNGAMMRNIYPTTS 71
S+I +G N+ P T+
Sbjct: 169 SLIRDTDG----NVKPGTT 183
>gi|381216188|gb|AFF61354.1| paired box protein 7 beta variant 4 [Oncorhynchus mykiss]
Length = 505
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 229 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 288
Query: 54 VIP 56
++P
Sbjct: 289 LLP 291
>gi|327259827|ref|XP_003214737.1| PREDICTED: paired box protein Pax-6-like isoform 3 [Anolis
carolinensis]
Length = 436
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|17227115|gb|AAL38015.1| PAX6 [Mus musculus]
Length = 352
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 200 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 259
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 260 NTPSHIP------ISSSFSTSV--YQPIPQPTT 284
>gi|77547035|gb|ABA90484.1| paired box protein PAX6 isoform a [Oryctolagus cuniculus]
Length = 422
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|300796399|ref|NP_001179482.1| homeobox protein aristaless-like 3 [Bos taurus]
gi|296489406|tpg|DAA31519.1| TPA: aristaless-like homeobox 3-like [Bos taurus]
Length = 343
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 164 QLEELEKVFQKTHYPDVYAREQLAVRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP 223
>gi|327259833|ref|XP_003214740.1| PREDICTED: paired box protein Pax-6-like isoform 6 [Anolis
carolinensis]
Length = 355
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 153 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 212
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 213 NTPSHIP------ISSSFSTSV--YQPIPQPTT 237
>gi|195393244|ref|XP_002055264.1| GJ19274 [Drosophila virilis]
gi|194149774|gb|EDW65465.1| GJ19274 [Drosophila virilis]
Length = 269
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELEA F K+HYPD++ REE+A+ QVWFQNRRAK+RKQ +
Sbjct: 34 QQLQELEALFQKTHYPDVFLREEVALRISLSEARVQVWFQNRRAKWRKQAR 84
>gi|126332676|ref|XP_001368029.1| PREDICTED: homeobox protein aristaless-like 4-like [Monodelphis
domestica]
Length = 417
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 232 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQIQQVRT 290
>gi|61189938|gb|AAX39333.1| paired box gene 6 [Ovis aries]
Length = 346
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 166 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 225
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 226 NTPSHIP------ISSSFSTSV--YQPIPQPTT 250
>gi|355566635|gb|EHH23014.1| hypothetical protein EGK_06384 [Macaca mulatta]
Length = 361
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 175 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 234
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 235 NTPSHIP------ISSSFSTSV--YQPIPQPTT 259
>gi|348557448|ref|XP_003464531.1| PREDICTED: paired box protein Pax-6-like isoform 1 [Cavia
porcellus]
Length = 422
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|149022827|gb|EDL79721.1| paired box gene 6, isoform CRA_a [Rattus norvegicus]
gi|149022830|gb|EDL79724.1| paired box gene 6, isoform CRA_a [Rattus norvegicus]
Length = 456
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 254 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 313
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 314 NTPSHIP------ISSSFSTSV--YQPIPQPTT 338
>gi|432103936|gb|ELK30769.1| Homeobox protein aristaless-like 3 [Myotis davidii]
Length = 354
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 18/90 (20%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 175 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP 234
Query: 53 -------SVIPTCNG--AMMRNIYPTTSRG 73
SV+P + + +++P+ + G
Sbjct: 235 FSSAYDISVLPRTDSHPQLQNSLWPSPASG 264
>gi|73982544|ref|XP_850737.1| PREDICTED: ALX homeobox 4 isoform 1 [Canis lupus familiaris]
Length = 414
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 228 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 286
>gi|71892442|ref|NP_001025475.1| homeobox protein aristaless-like 4 [Bos taurus]
gi|109940203|sp|Q4LAL6.1|ALX4_BOVIN RecName: Full=Homeobox protein aristaless-like 4
gi|70561331|emb|CAJ14976.1| aristaless-like homeobox 4 [Bos taurus]
Length = 397
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 211 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 269
>gi|194890930|ref|XP_001977409.1| GG19028 [Drosophila erecta]
gi|190649058|gb|EDV46336.1| GG19028 [Drosophila erecta]
Length = 264
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELEA F K+HYPD++ REE+A+ QVWFQNRRAK+RKQ +
Sbjct: 34 QQLQELEALFQKTHYPDVFLREEVALRISLSEARVQVWFQNRRAKWRKQAR 84
>gi|194769256|ref|XP_001966722.1| GF19173 [Drosophila ananassae]
gi|190618243|gb|EDV33767.1| GF19173 [Drosophila ananassae]
Length = 281
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELEA F K+HYPD++ REE+A+ QVWFQNRRAK+RKQ +
Sbjct: 34 QQLQELEALFQKTHYPDVFLREEVALRISLSEARVQVWFQNRRAKWRKQAR 84
>gi|3024855|sp|Q90277.1|VSX1_CARAU RecName: Full=Visual system homeobox 1; AltName: Full=Homeobox
protein VSX-1; AltName: Full=Transcription factor VSX1
gi|460928|gb|AAC24600.1| Vsx-1 homeobox protein [Carassius auratus]
Length = 341
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFHEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|34328055|ref|NP_035169.1| paired box protein Pax-7 [Mus musculus]
gi|52788256|sp|P47239.2|PAX7_MOUSE RecName: Full=Paired box protein Pax-7
gi|20522260|gb|AAG16663.3|AF254422_1 paired box transcription factor PAX7 [Mus musculus]
gi|162318458|gb|AAI56073.1| Paired box gene 7 [synthetic construct]
gi|162319578|gb|AAI56885.1| Paired box gene 7 [synthetic construct]
Length = 503
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 285 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 312
>gi|1488322|gb|AAB05932.1| Xpax6 [Xenopus laevis]
Length = 422
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|8132383|gb|AAF73271.1|AF154555_1 paired domain transcription factor variant A [Xenopus laevis]
gi|8132385|gb|AAF73272.1|AF154556_1 paired domain transcription factor variant A [Xenopus laevis]
Length = 422
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|403254633|ref|XP_003920066.1| PREDICTED: homeobox protein aristaless-like 4 [Saimiri boliviensis
boliviensis]
Length = 394
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 208 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 266
>gi|344281094|ref|XP_003412315.1| PREDICTED: homeobox protein aristaless-like 4-like [Loxodonta
africana]
Length = 406
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 220 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 278
>gi|334331633|ref|XP_001368528.2| PREDICTED: paired box protein Pax-6 isoform 1 [Monodelphis
domestica]
Length = 553
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 351 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 410
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 411 NTPSHIP------ISSSFSTSV--YQPIPQPTT 435
>gi|297666243|ref|XP_002811443.1| PREDICTED: paired box protein Pax-7 isoform 1 [Pongo abelii]
Length = 505
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 46/88 (52%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA---- 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 50 LTPSVIPTCNGAMM------RNIYPTTS 71
L P P + + YPTT+
Sbjct: 287 LLPGGFPPAGMPTLPPYQLPDSTYPTTT 314
>gi|124054602|gb|ABM89502.1| Pax3 [Scyliorhinus canicula]
Length = 319
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 34/49 (69%), Gaps = 7/49 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQ 42
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 135 EQLEELERAFGRTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 183
>gi|24640656|ref|NP_572500.1| CG11294, isoform A [Drosophila melanogaster]
gi|442615563|ref|NP_001259352.1| CG11294, isoform B [Drosophila melanogaster]
gi|7290965|gb|AAF46405.1| CG11294, isoform A [Drosophila melanogaster]
gi|66571256|gb|AAY51593.1| IP01065p [Drosophila melanogaster]
gi|440216555|gb|AGB95195.1| CG11294, isoform B [Drosophila melanogaster]
Length = 261
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELEA F K+HYPD++ REE+A+ QVWFQNRRAK+RKQ +
Sbjct: 34 QQLQELEALFQKTHYPDVFLREEVALRISLSEARVQVWFQNRRAKWRKQAR 84
>gi|348507210|ref|XP_003441149.1| PREDICTED: dorsal root ganglia homeobox protein-like [Oreochromis
niloticus]
Length = 308
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 52 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 102
>gi|327259835|ref|XP_003214741.1| PREDICTED: paired box protein Pax-6-like isoform 7 [Anolis
carolinensis]
Length = 430
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|449501716|ref|XP_004176235.1| PREDICTED: LOW QUALITY PROTEIN: paired box protein Pax-6
[Taeniopygia guttata]
Length = 546
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 350 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 409
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 410 NTPSHIP------ISSSFSTSV--YQPIPQPTT 434
>gi|55742272|ref|NP_001006763.1| paired box 6 [Xenopus (Silurana) tropicalis]
gi|49522632|gb|AAH75551.1| paired box 6 [Xenopus (Silurana) tropicalis]
Length = 424
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 222 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 281
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 282 NTPSHIP------ISSSFSTSV--YQPIPQPTT 306
>gi|350593920|ref|XP_003359706.2| PREDICTED: paired box protein Pax-3-like, partial [Sus scrofa]
Length = 136
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 51/112 (45%), Gaps = 27/112 (24%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQ------ 47
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q
Sbjct: 33 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNH 92
Query: 48 ---KALTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNTINRQHFVILVPGMS 96
P+ +PT Y + YQP P Q + VPG
Sbjct: 93 LIPGGFPPTAMPTL------PTYQLSETSYQPTAIP-----QDLIDEVPGFG 133
>gi|91083441|ref|XP_969909.1| PREDICTED: similar to conserved hypothetical protein [Tribolium
castaneum]
gi|270008142|gb|EFA04590.1| reversed polarity [Tribolium castaneum]
Length = 366
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 16/132 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++ YPD++ REELA+ QVWFQNRRAK+RK+E + S
Sbjct: 138 QLEELERAFERAPYPDVFAREELALKLSLSESRVQVWFQNRRAKWRKREPPRKTGYISSN 197
Query: 55 IPTCNGAMMRNIYPTTSRGYQPYPHPNTINRQHFVILVPGMSTEDEWYNKSLSALRMNSS 114
P+ + N T P+ NT+N V ST D L+ L +S+
Sbjct: 198 TPSS--TISTNFNTTI-----PFTQTNTLNSSAPVDTWSYQSTYD--LGPHLNLLNSSST 248
Query: 115 HHSNLATPMLQY 126
+SN +P Y
Sbjct: 249 PYSNFGSPQNGY 260
>gi|440892608|gb|ELR45722.1| Paired box protein Pax-7 [Bos grunniens mutus]
Length = 502
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 287 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 314
>gi|395831671|ref|XP_003788918.1| PREDICTED: retina and anterior neural fold homeobox protein 2
[Otolemur garnettii]
Length = 184
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF SHYPD+Y REELA + QVWFQNRRAK+R+QE+
Sbjct: 38 QLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER 87
>gi|344283453|ref|XP_003413486.1| PREDICTED: paired box protein Pax-7-like [Loxodonta africana]
Length = 505
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 287 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 314
>gi|6671541|ref|NP_031468.1| homeobox protein aristaless-like 4 [Mus musculus]
gi|13626102|sp|O35137.1|ALX4_MOUSE RecName: Full=Homeobox protein aristaless-like 4; AltName:
Full=ALX-4
gi|2352266|gb|AAC39943.1| paired-type homeodomain transcription factor [Mus musculus]
gi|148695681|gb|EDL27628.1| aristaless 4 [Mus musculus]
Length = 399
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 213 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 271
>gi|410973607|ref|XP_003993239.1| PREDICTED: homeobox protein aristaless-like 4 [Felis catus]
Length = 408
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 222 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 280
>gi|395744635|ref|XP_002823601.2| PREDICTED: ALX homeobox protein 1-like, partial [Pongo abelii]
Length = 220
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>gi|381216194|gb|AFF61357.1| paired box protein 7 beta variant 7 [Oncorhynchus mykiss]
Length = 501
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 54 VIP 56
++P
Sbjct: 285 LLP 287
>gi|381216186|gb|AFF61353.1| paired box protein 7 beta variant 3 [Oncorhynchus mykiss]
Length = 514
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 238 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 297
Query: 54 VIP 56
++P
Sbjct: 298 LLP 300
>gi|322788828|gb|EFZ14396.1| hypothetical protein SINV_80377 [Solenopsis invicta]
Length = 294
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 5/52 (9%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-----QVWFQNRRAKYRKQEKQLQK 48
QL ELE AF + YPD++ REELA+ +VWFQNRRAK+RK+EK L +
Sbjct: 79 QLHELEKAFGNTQYPDVFTREELAMRLDLSEARVWFQNRRAKWRKKEKALGR 130
>gi|312072725|ref|XP_003139196.1| hypothetical protein LOAG_03611 [Loa loa]
gi|307765638|gb|EFO24872.1| hypothetical protein LOAG_03611 [Loa loa]
Length = 237
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
Q+ ELE AF ++HYPDIY RE LA+ QVWFQNRRAK+RK EK K+ T
Sbjct: 49 QVDELEKAFQEAHYPDIYARELLAMKTEIAVDRIQVWFQNRRAKWRKTEKTWGKS-TIMA 107
Query: 55 IPTCNGAMMRNIYP 68
GAM+R+ P
Sbjct: 108 EYGLYGAMVRHSLP 121
>gi|148681370|gb|EDL13317.1| paired box gene 7 [Mus musculus]
Length = 498
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 220 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 279
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 280 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 307
>gi|115501623|gb|ABI98859.1| paired box 6 transcript variant 14 [Columba livia]
gi|115501627|gb|ABI98861.1| paired box 6 transcript variant 16 [Columba livia]
gi|115501631|gb|ABI98863.1| paired box 6 transcript variant 18 [Columba livia]
gi|115501635|gb|ABI98865.1| paired box 6 transcript variant 20 [Columba livia]
gi|115501639|gb|ABI98867.1| paired box 6 transcript variant 22 [Columba livia]
gi|115501643|gb|ABI98869.1| paired box 6 transcript variant 24 [Columba livia]
gi|115501647|gb|ABI98871.1| paired box 6 transcript variant 26 [Columba livia]
gi|115501651|gb|ABI98873.1| paired box 6 transcript variant 28 [Columba livia]
gi|115501655|gb|ABI98875.1| paired box 6 transcript variant 30 [Columba livia]
gi|115501659|gb|ABI98877.1| paired box 6 transcript variant 32 [Columba livia]
gi|115501663|gb|ABI98879.1| paired box 6 transcript variant 34 [Columba livia]
gi|115501667|gb|ABI98881.1| paired box 6 transcript variant 36 [Columba livia]
gi|115501671|gb|ABI98883.1| paired box 6 transcript variant 38 [Columba livia]
Length = 280
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 84 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 143
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + ++ YQP P P T
Sbjct: 144 NTPSHIPISSSF--------STSVYQPIPQPTT 168
>gi|402853155|ref|XP_003891265.1| PREDICTED: paired box protein Pax-7 [Papio anubis]
Length = 504
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 226 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 285
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 286 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 313
>gi|327259823|ref|XP_003214735.1| PREDICTED: paired box protein Pax-6-like isoform 1 [Anolis
carolinensis]
Length = 422
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|602343|emb|CAA84513.1| PAX7 paired box containing transcription factor [Homo sapiens]
Length = 467
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 287 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 314
>gi|426386634|ref|XP_004059788.1| PREDICTED: retina and anterior neural fold homeobox protein 2
isoform 1 [Gorilla gorilla gorilla]
Length = 230
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF SHYPD+Y REELA + QVWFQNRRAK+R+QE+
Sbjct: 84 QLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER 133
>gi|157818677|ref|NP_001100023.1| homeobox protein aristaless-like 4 [Rattus norvegicus]
gi|149022700|gb|EDL79594.1| aristaless 4 (predicted) [Rattus norvegicus]
Length = 399
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 213 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 271
>gi|13774326|gb|AAK38835.1| aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 225 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 283
>gi|11125350|emb|CAC15060.1| homeodomain transcription factor ALX4 [Homo sapiens]
Length = 411
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 225 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 283
>gi|62087934|dbj|BAD92414.1| paired box gene 6 isoform a variant [Homo sapiens]
Length = 385
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 183 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 242
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 243 NTPSHIP------ISSSFSTSV--YQPIPQPTT 267
>gi|348558708|ref|XP_003465158.1| PREDICTED: homeobox protein aristaless-like 4-like [Cavia
porcellus]
Length = 407
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 221 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 279
>gi|296206868|ref|XP_002750384.1| PREDICTED: paired box protein Pax-7 [Callithrix jacchus]
Length = 502
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 287 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 314
>gi|51869697|emb|CAH04385.1| paired box protein 7 [Salmo salar]
Length = 514
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 238 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 297
Query: 54 VIP 56
++P
Sbjct: 298 LLP 300
>gi|195163231|ref|XP_002022455.1| GL13041 [Drosophila persimilis]
gi|194104447|gb|EDW26490.1| GL13041 [Drosophila persimilis]
Length = 264
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELEA F K+HYPD++ REE+A+ QVWFQNRRAK+RKQ +
Sbjct: 34 QQLQELEALFQKTHYPDVFLREEVALRISLSEARVQVWFQNRRAKWRKQAR 84
>gi|119589694|gb|EAW69288.1| retina and anterior neural fold homeobox like 1 [Homo sapiens]
Length = 230
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF SHYPD+Y REELA + QVWFQNRRAK+R+QE+
Sbjct: 84 QLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER 133
>gi|432857455|ref|XP_004068689.1| PREDICTED: paired box protein Pax-7-like isoform 2 [Oryzias
latipes]
Length = 510
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 36/56 (64%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 233 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLA 288
>gi|53125966|emb|CAG25714.1| paired box protein 7 [Salvelinus alpinus]
Length = 505
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 229 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 288
Query: 54 VIP 56
++P
Sbjct: 289 LLP 291
>gi|391338110|ref|XP_003743404.1| PREDICTED: uncharacterized protein LOC100901399 [Metaseiulus
occidentalis]
Length = 789
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 308 QQLEELERAFAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKAER 358
>gi|331271830|gb|AED02520.1| paired box 6 protein [Coturnix japonica]
Length = 281
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 162 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 221
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 222 NTPSHIP------ISSSFSTSV--YQPIPQPTT 246
>gi|301787271|ref|XP_002929051.1| PREDICTED: homeobox protein aristaless-like 4-like [Ailuropoda
melanoleuca]
Length = 353
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 167 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 225
>gi|126343736|ref|XP_001379904.1| PREDICTED: paired box protein Pax-7-like, partial [Monodelphis
domestica]
Length = 309
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 36/56 (64%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 31 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLA 86
>gi|426368049|ref|XP_004051027.1| PREDICTED: homeobox protein aristaless-like 4 [Gorilla gorilla
gorilla]
Length = 409
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 223 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 281
>gi|332261023|ref|XP_003279579.1| PREDICTED: LOW QUALITY PROTEIN: paired box protein Pax-7-like
[Nomascus leucogenys]
Length = 518
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 285 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 312
>gi|161789023|sp|O42477.3|VSX2_DANRE RecName: Full=Visual system homeobox 2; AltName: Full=Ceh-10
homeodomain-containing homolog; AltName: Full=Homeobox
protein ALX; AltName: Full=Homeobox protein CHX10;
AltName: Full=Transcription factor VSX2
Length = 393
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 176 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 232
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 233 MAEYGLYGAMVRHSIP 248
>gi|119588642|gb|EAW68236.1| paired box gene 6 (aniridia, keratitis), isoform CRA_c [Homo
sapiens]
Length = 470
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 268 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 327
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 328 NTPSHIP------ISSSFSTSV--YQPIPQPTT 352
>gi|119588472|gb|EAW68066.1| aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 225 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 283
>gi|55743092|ref|NP_068745.2| homeobox protein aristaless-like 4 [Homo sapiens]
gi|254763249|sp|Q9H161.2|ALX4_HUMAN RecName: Full=Homeobox protein aristaless-like 4
gi|11125719|emb|CAC15120.1| homeodomain transcription factor ALX4 [Homo sapiens]
gi|168278961|dbj|BAG11360.1| aristaless-like homeobox 4 [synthetic construct]
gi|187252473|gb|AAI66622.1| ALX homeobox 4 [synthetic construct]
Length = 411
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 225 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 283
>gi|431906259|gb|ELK10456.1| Paired box protein Pax-7 [Pteropus alecto]
Length = 342
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 36/56 (64%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 64 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLA 119
>gi|426218849|ref|XP_004003649.1| PREDICTED: homeobox protein aristaless-like 3 [Ovis aries]
Length = 330
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 151 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP 210
>gi|83940796|gb|ABC48797.1| PAX7 transcriptional factor isoform B [Homo sapiens]
Length = 505
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 287 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 314
>gi|410966276|ref|XP_003989659.1| PREDICTED: paired box protein Pax-7 [Felis catus]
Length = 503
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 287 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 314
>gi|395821127|ref|XP_003783899.1| PREDICTED: paired box protein Pax-7 [Otolemur garnettii]
Length = 505
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 287 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 314
>gi|363583686|gb|AEW27310.1| VSX2, visual system homeobox 2 [Columba livia]
Length = 221
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 22 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 78
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 79 MAEYGLYGAMVRHSIP 94
>gi|381216178|gb|AFF61349.1| paired box protein 7 alpha variant 3 [Oncorhynchus mykiss]
Length = 506
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 230 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 289
Query: 54 VIP 56
++P
Sbjct: 290 LLP 292
>gi|1352720|sp|P47238.1|PAX6_COTJA RecName: Full=Paired box protein Pax-6; AltName: Full=Pax-QNR
gi|481053|pir||S37689 paired box transcription factor Pax-6 - quail
gi|311772|emb|CAA49899.1| paired box and homeobox [Coturnix coturnix]
gi|115501603|gb|ABI98849.1| paired box 6 transcript variant 4 [Columba livia]
Length = 416
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>gi|14017793|dbj|BAB47417.1| KIAA1788 protein [Homo sapiens]
Length = 413
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 227 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 285
>gi|185133665|ref|NP_001117167.1| paired box protein 7 [Salmo salar]
gi|51869693|emb|CAH04383.1| paired box protein 7 [Salmo salar]
Length = 520
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 243 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 302
Query: 54 VIP 56
++P
Sbjct: 303 LLP 305
>gi|4505619|ref|NP_002575.1| paired box protein Pax-7 isoform 1 [Homo sapiens]
gi|8247951|sp|P23759.3|PAX7_HUMAN RecName: Full=Paired box protein Pax-7; AltName: Full=HuP1
gi|2570015|emb|CAA65522.1| PAX7 [Homo sapiens]
gi|2570021|emb|CAA65520.1| paired box containing transcription factor [Homo sapiens]
gi|119615261|gb|EAW94855.1| paired box gene 7, isoform CRA_c [Homo sapiens]
Length = 520
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 287 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 314
>gi|397486749|ref|XP_003814486.1| PREDICTED: paired box protein Pax-7 [Pan paniscus]
Length = 505
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 287 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 314
>gi|391343741|ref|XP_003746164.1| PREDICTED: visual system homeobox 1-like, partial [Metaseiulus
occidentalis]
Length = 330
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF +HYPD+Y RE L++ QVWFQNRRAK+RK EK KA T
Sbjct: 46 QLEELEKAFKDAHYPDVYAREMLSLKTDLPEDRIQVWFQNRRAKWRKTEKCWGKA-TIMA 104
Query: 55 IPTCNGAMMRNIYP 68
GAM+R+ P
Sbjct: 105 EYGLYGAMVRHSLP 118
>gi|296220129|ref|XP_002756185.1| PREDICTED: dorsal root ganglia homeobox protein [Callithrix
jacchus]
Length = 282
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 62 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 112
>gi|296215495|ref|XP_002754149.1| PREDICTED: visual system homeobox 2 isoform 1 [Callithrix jacchus]
Length = 361
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|53125916|emb|CAG25520.1| paired box protein 7 [Salvelinus alpinus]
Length = 513
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 237 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 296
Query: 54 VIP 56
++P
Sbjct: 297 LLP 299
>gi|51869705|emb|CAH04389.1| paired box protein 7 [Salmo salar]
Length = 508
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 232 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 291
Query: 54 VIP 56
++P
Sbjct: 292 LLP 294
>gi|385251413|ref|NP_001245265.1| paired box gene 7b [Oncorhynchus mykiss]
gi|381216192|gb|AFF61356.1| paired box protein 7 beta variant 6 [Oncorhynchus mykiss]
Length = 497
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 221 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 280
Query: 54 VIP 56
++P
Sbjct: 281 LLP 283
>gi|355562412|gb|EHH19006.1| hypothetical protein EGK_19626 [Macaca mulatta]
Length = 268
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 48 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 98
>gi|301626100|ref|XP_002942236.1| PREDICTED: paired box protein Pax-7-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 509
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 233 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 292
Query: 54 VIP 56
++P
Sbjct: 293 LLP 295
>gi|301626098|ref|XP_002942235.1| PREDICTED: paired box protein Pax-7-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 502
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 226 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 285
Query: 54 VIP 56
++P
Sbjct: 286 LLP 288
>gi|302564109|ref|NP_001181527.1| dorsal root ganglia homeobox protein [Macaca mulatta]
gi|402880151|ref|XP_003903676.1| PREDICTED: dorsal root ganglia homeobox protein [Papio anubis]
gi|355782761|gb|EHH64682.1| hypothetical protein EGM_17968 [Macaca fascicularis]
Length = 268
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 48 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 98
>gi|114554358|ref|XP_513156.2| PREDICTED: paired box protein Pax-7 isoform 2 [Pan troglodytes]
Length = 518
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 285 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 312
>gi|403264646|ref|XP_003924586.1| PREDICTED: visual system homeobox 2 [Saimiri boliviensis
boliviensis]
Length = 361
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|402893728|ref|XP_003910041.1| PREDICTED: homeobox protein aristaless-like 4 [Papio anubis]
Length = 409
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 223 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 281
>gi|399146688|gb|AFP25466.1| paired box 7 [Anas platyrhynchos]
Length = 503
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 226 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 285
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 286 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 313
>gi|381216184|gb|AFF61352.1| paired box protein 7 beta variant 2 [Oncorhynchus mykiss]
Length = 514
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 238 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 297
Query: 54 VIP 56
++P
Sbjct: 298 LLP 300
>gi|355566588|gb|EHH22967.1| Homeobox protein aristaless-like 4 [Macaca mulatta]
Length = 409
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 223 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 281
>gi|351696938|gb|EHA99856.1| Homeobox protein aristaless-like 4, partial [Heterocephalus glaber]
Length = 300
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 113 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 171
>gi|296232532|ref|XP_002761628.1| PREDICTED: retina and anterior neural fold homeobox protein 2
[Callithrix jacchus]
Length = 227
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF SHYPD+Y REELA + QVWFQNRRAK+R+QE+
Sbjct: 81 QLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER 130
>gi|213626247|gb|AAI70120.1| LOC496378 protein [Xenopus laevis]
Length = 501
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 54 VIP 56
++P
Sbjct: 287 LLP 289
>gi|148692895|gb|EDL24842.1| paired related homeobox protein-like 1 [Mus musculus]
Length = 295
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 85 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 135
>gi|119615260|gb|EAW94854.1| paired box gene 7, isoform CRA_b [Homo sapiens]
Length = 504
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 226 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 285
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 286 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 313
>gi|119615262|gb|EAW94856.1| paired box gene 7, isoform CRA_d [Homo sapiens]
gi|410341457|gb|JAA39675.1| paired box 7 [Pan troglodytes]
gi|410341461|gb|JAA39677.1| paired box 7 [Pan troglodytes]
Length = 503
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 285 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 312
>gi|119888927|ref|XP_616352.3| PREDICTED: paired box protein Pax-7 isoform 1 [Bos taurus]
gi|297472329|ref|XP_002685784.1| PREDICTED: paired box protein Pax-7 [Bos taurus]
gi|296490095|tpg|DAA32208.1| TPA: paired box 7 [Bos taurus]
Length = 505
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 287 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 314
>gi|109106654|ref|XP_001113643.1| PREDICTED: homeobox protein aristaless-like 4-like [Macaca mulatta]
Length = 409
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 223 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 281
>gi|108998495|ref|XP_001091106.1| PREDICTED: paired box protein Pax-7-like isoform 1 [Macaca mulatta]
Length = 505
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 287 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 314
>gi|7524359|ref|NP_039236.1| paired box protein Pax-7 isoform 2 [Homo sapiens]
gi|2570014|emb|CAA65521.1| PAX7 [Homo sapiens]
gi|111307751|gb|AAI21166.1| Paired box 7 [Homo sapiens]
gi|111307754|gb|AAI21167.1| Paired box 7 [Homo sapiens]
gi|119615259|gb|EAW94853.1| paired box gene 7, isoform CRA_a [Homo sapiens]
Length = 518
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 285 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 312
>gi|6636097|gb|AAF20054.1|AF178854_1 Pax3-forkhead fusion protein [synthetic construct]
gi|431254|gb|AAC50053.1| PAX3 protein-forkhead transcription factor fusion [Homo sapiens]
Length = 836
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 34/49 (69%), Gaps = 7/49 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQ 42
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 229 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 277
>gi|395815567|ref|XP_003781297.1| PREDICTED: homeobox protein aristaless-like 4 [Otolemur garnettii]
Length = 407
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 223 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 281
>gi|381216190|gb|AFF61355.1| paired box protein 7 beta variant 5 [Oncorhynchus mykiss]
Length = 501
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 54 VIP 56
++P
Sbjct: 285 LLP 287
>gi|381216182|gb|AFF61351.1| paired box protein 7 beta variant 1 [Oncorhynchus mykiss]
Length = 518
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 242 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 301
Query: 54 VIP 56
++P
Sbjct: 302 LLP 304
>gi|348544801|ref|XP_003459869.1| PREDICTED: paired box protein Pax-7-like isoform 2 [Oreochromis
niloticus]
Length = 526
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 244 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 303
Query: 54 VIP 56
++P
Sbjct: 304 LLP 306
>gi|345792953|ref|XP_848719.2| PREDICTED: dorsal root ganglia homeobox protein [Canis lupus
familiaris]
Length = 287
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 67 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 117
>gi|345492392|ref|XP_001599466.2| PREDICTED: hypothetical protein LOC100114448 [Nasonia vitripennis]
Length = 437
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 36/51 (70%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
+QL ELE AF ++HYPD+Y RE L++ QVWFQNRRAK+RK EK
Sbjct: 202 QQLEELETAFKEAHYPDVYAREMLSLRTDLPEDRIQVWFQNRRAKWRKTEK 252
>gi|322788141|gb|EFZ13923.1| hypothetical protein SINV_02746 [Solenopsis invicta]
Length = 401
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/62 (53%), Positives = 40/62 (64%), Gaps = 7/62 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQLAELE F ++HYPD + REEL+ QVWFQNRRAK RK E QL K + S
Sbjct: 224 EQLAELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQLHKGVAGS 283
Query: 54 VI 55
++
Sbjct: 284 MV 285
>gi|207029223|ref|NP_001128726.1| paired box protein Pax-7 isoform 3 [Homo sapiens]
gi|114554356|ref|XP_001157066.1| PREDICTED: paired box protein Pax-7 isoform 1 [Pan troglodytes]
gi|426328069|ref|XP_004024825.1| PREDICTED: paired box protein Pax-7 isoform 2 [Gorilla gorilla
gorilla]
gi|410341459|gb|JAA39676.1| paired box 7 [Pan troglodytes]
Length = 505
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 287 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 314
>gi|426364705|ref|XP_004049438.1| PREDICTED: dorsal root ganglia homeobox protein [Gorilla gorilla
gorilla]
Length = 268
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 48 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 98
>gi|51869699|emb|CAH04386.1| paired box protein 7 [Salmo salar]
Length = 506
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 230 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 289
Query: 54 VIP 56
++P
Sbjct: 290 LLP 292
>gi|354491350|ref|XP_003507818.1| PREDICTED: homeobox protein aristaless-like 4-like [Cricetulus
griseus]
Length = 319
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 133 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 191
>gi|332258274|ref|XP_003278225.1| PREDICTED: dorsal root ganglia homeobox protein [Nomascus
leucogenys]
Length = 268
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 48 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 98
>gi|326932470|ref|XP_003212340.1| PREDICTED: paired box protein Pax-7, partial [Meleagris gallopavo]
Length = 330
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 31 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 90
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 91 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 118
>gi|291384886|ref|XP_002709113.1| PREDICTED: aristaless-like homeobox 4-like [Oryctolagus cuniculus]
Length = 397
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 211 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 269
>gi|258503879|gb|ACV72676.1| UNC-4 [Caenorhabditis remanei]
gi|258503895|gb|ACV72684.1| UNC-4 [Caenorhabditis remanei]
gi|258503899|gb|ACV72686.1| UNC-4 [Caenorhabditis remanei]
gi|258503901|gb|ACV72687.1| UNC-4 [Caenorhabditis remanei]
Length = 223
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE+AF SHYPD++ RE LA+ QVWFQNRRAK+RK+E+ P
Sbjct: 90 QLEELESAFEASHYPDVFMREALAMRLDLLESRVQVWFQNRRAKWRKREQNRHGGSEPKK 149
Query: 55 IPTCNGAMM 63
+G MM
Sbjct: 150 --DADGIMM 156
>gi|167773479|gb|ABZ92174.1| paired box 3 [synthetic construct]
Length = 835
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 34/49 (69%), Gaps = 7/49 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQ 42
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 228 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 276
>gi|119588639|gb|EAW68233.1| paired box gene 6 (aniridia, keratitis), isoform CRA_a [Homo
sapiens]
gi|119588640|gb|EAW68234.1| paired box gene 6 (aniridia, keratitis), isoform CRA_a [Homo
sapiens]
Length = 456
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 254 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 313
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 314 NTPSHIP------ISSSFSTSV--YQPIPQPTT 338
>gi|148226698|ref|NP_001088995.1| paired box 7 [Xenopus laevis]
gi|52082690|gb|AAU25938.1| myogenic specification paired-box transcription factor Pax7
[Xenopus laevis]
Length = 500
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 226 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 285
Query: 54 VIP 56
++P
Sbjct: 286 LLP 288
>gi|426230726|ref|XP_004009413.1| PREDICTED: retina and anterior neural fold homeobox protein 2 [Ovis
aries]
Length = 188
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF SHYPD+Y REELA + QVWFQNRRAK+R+QE+
Sbjct: 52 QLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER 101
>gi|2495315|sp|P55864.1|PAX6_XENLA RecName: Full=Paired box protein Pax-6
gi|1685056|gb|AAB36683.1| Pax6 [Xenopus laevis]
Length = 422
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + ++ YQP P P T
Sbjct: 280 NTPSHIPISSSF--------SASVYQPIPQPTT 304
>gi|385251415|ref|NP_001245266.1| paired box 7 [Oncorhynchus mykiss]
gi|381216180|gb|AFF61350.1| paired box protein 7 alpha variant 4 [Oncorhynchus mykiss]
Length = 502
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 226 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 285
Query: 54 VIP 56
++P
Sbjct: 286 LLP 288
>gi|281344761|gb|EFB20345.1| hypothetical protein PANDA_019137 [Ailuropoda melanoleuca]
Length = 422
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 236 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 294
>gi|255689730|gb|ACU30148.1| paired box 3 [Monodelphis domestica]
Length = 319
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q +
Sbjct: 199 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGASQLMASNH 258
Query: 54 VIPTCNGAMMRNIYPT---TSRGYQPYPHPNTIN 84
+IP PT + YQP P ++
Sbjct: 259 LIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVS 292
>gi|449275732|gb|EMC84500.1| Short stature homeobox protein, partial [Columba livia]
Length = 211
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKAL--- 50
EQL ELE F ++HYPD + REEL+ QVWFQNRRAK RKQE Q+ K +
Sbjct: 126 EQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILG 185
Query: 51 TPSVIPTCNGA 61
T S + C A
Sbjct: 186 TASHLDACRVA 196
>gi|440901719|gb|ELR52608.1| Visual system homeobox 2, partial [Bos grunniens mutus]
Length = 379
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 178 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 234
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 235 MAEYGLYGAMVRHSIP 250
>gi|53126022|emb|CAG25718.1| paired box protein 7 [Salvelinus alpinus]
Length = 501
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 54 VIP 56
++P
Sbjct: 285 LLP 287
>gi|53125887|emb|CAG25525.1| paired box protein 7 [Salvelinus alpinus]
Length = 497
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 221 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 280
Query: 54 VIP 56
++P
Sbjct: 281 LLP 283
>gi|348534166|ref|XP_003454574.1| PREDICTED: paired box protein Pax-7-like isoform 3 [Oreochromis
niloticus]
Length = 509
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 36/56 (64%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 232 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLA 287
>gi|297686443|ref|XP_002820758.1| PREDICTED: dorsal root ganglia homeobox protein [Pongo abelii]
Length = 268
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 48 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 98
>gi|45383792|ref|NP_989493.1| homeobox protein aristaless-like 4 [Gallus gallus]
gi|3661601|gb|AAC61772.1| paired type homeodomain protein [Gallus gallus]
Length = 387
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 203 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 261
>gi|80751123|ref|NP_001032182.1| dorsal root ganglia homeobox protein [Danio rerio]
gi|58759849|gb|AAW81987.1| paired-like homeodomain transcription factor DRG11 [Danio rerio]
Length = 287
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 52 QQLEALEAVFAQTHYPDVFAREELAMKINLTEARVQVWFQNRRAKWRKTER 102
>gi|53125994|emb|CAG25716.1| paired box protein 7 [Salvelinus alpinus]
Length = 514
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 238 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 297
Query: 54 VIP 56
++P
Sbjct: 298 LLP 300
>gi|51869703|emb|CAH04388.1| paired box protein 7 [Salmo salar]
Length = 516
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 240 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 299
Query: 54 VIP 56
++P
Sbjct: 300 LLP 302
>gi|41581183|emb|CAF02091.1| paired box protein 7 [Salmo salar]
Length = 514
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 238 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 297
Query: 54 VIP 56
++P
Sbjct: 298 LLP 300
>gi|395731076|ref|XP_003775838.1| PREDICTED: paired box protein Pax-7 isoform 2 [Pongo abelii]
Length = 518
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 285 LLPGGFPPAGMPTLPPYQLPDSTYPTTT 312
>gi|381216176|gb|AFF61348.1| paired box protein 7 alpha variant 2 [Oncorhynchus mykiss]
Length = 514
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 238 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 297
Query: 54 VIP 56
++P
Sbjct: 298 LLP 300
>gi|348570856|ref|XP_003471212.1| PREDICTED: paired box protein Pax-7 [Cavia porcellus]
Length = 517
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 46/88 (52%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA---- 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 240 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 299
Query: 50 LTPSVIPTCNGAMM------RNIYPTTS 71
L P P + + YPTT+
Sbjct: 300 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 327
>gi|348540080|ref|XP_003457516.1| PREDICTED: visual system homeobox 1-like [Oreochromis niloticus]
Length = 306
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 110 QLEELEKAFQEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 166
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 167 MAEYGLYGAMVRHSIP 182
>gi|301757789|ref|XP_002914738.1| PREDICTED: visual system homeobox 2-like [Ailuropoda melanoleuca]
gi|281351428|gb|EFB27012.1| hypothetical protein PANDA_002665 [Ailuropoda melanoleuca]
Length = 362
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 43/160 (26%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK---------- 44
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAE 218
Query: 45 ----------------QLQKALTPSVIPTCN----GAMMRNIYPTTSRGYQPY------P 78
+ K+ ++ +C G +++ G +P P
Sbjct: 219 YGLYGAMVRHSIPLPESILKSAKDGIMDSCAPWLLGMHKKSLEAAAESGRKPEVERQAPP 278
Query: 79 HPNTINRQHFVILVPGMSTEDEWYNKSLSALRMNSSHHSN 118
N + ++ P +++E S++ALR + HS
Sbjct: 279 RLNKVEQEEGGPEPPAAMSQEELRENSIAALRARAQEHST 318
>gi|51869695|emb|CAH04384.1| paired box protein 7 [Salmo salar]
Length = 515
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 239 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 298
Query: 54 VIP 56
++P
Sbjct: 299 LLP 301
>gi|381216174|gb|AFF61347.1| paired box protein 7 alpha variant 1 [Oncorhynchus mykiss]
Length = 515
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 239 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 298
Query: 54 VIP 56
++P
Sbjct: 299 LLP 301
>gi|348544799|ref|XP_003459868.1| PREDICTED: paired box protein Pax-7-like isoform 1 [Oreochromis
niloticus]
Length = 512
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 230 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 289
Query: 54 VIP 56
++P
Sbjct: 290 LLP 292
>gi|338727409|ref|XP_001918200.2| PREDICTED: paired box protein Pax-6 [Equus caballus]
Length = 395
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 193 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 252
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 253 NTPSHIP------ISSSFSTSV--YQPIPQPTT 277
>gi|335292784|ref|XP_001926687.2| PREDICTED: visual system homeobox 2-like [Sus scrofa]
Length = 394
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 192 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 248
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 249 MAEYGLYGAMVRHSIP 264
>gi|94404551|gb|ABF17938.1| Pax7 variant [Gallus gallus]
Length = 502
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 285 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 312
>gi|432857453|ref|XP_004068688.1| PREDICTED: paired box protein Pax-7-like isoform 1 [Oryzias
latipes]
Length = 508
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 231 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 290
Query: 54 VIP 56
++P
Sbjct: 291 LLP 293
>gi|431839120|gb|ELK01047.1| Visual system homeobox 2 [Pteropus alecto]
Length = 467
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 265 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 321
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 322 MAEYGLYGAMVRHSIP 337
>gi|53125901|emb|CAG25526.1| paired box protein 7 [Salvelinus alpinus]
Length = 502
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 226 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 285
Query: 54 VIP 56
++P
Sbjct: 286 LLP 288
>gi|355744963|gb|EHH49588.1| hypothetical protein EGM_00276, partial [Macaca fascicularis]
Length = 516
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 223 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 282
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 283 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 310
>gi|351714944|gb|EHB17863.1| Paired box protein Pax-6 [Heterocephalus glaber]
Length = 1055
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 853 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 912
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 913 NTPSHIP------ISSSFSTSV--YQPIPQPTT 937
>gi|300795246|ref|NP_001178913.1| paired box protein Pax-7 [Rattus norvegicus]
Length = 503
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 285 LLPGGFPPTGMPTLPPYQLPDSAYPTTT 312
>gi|426328067|ref|XP_004024824.1| PREDICTED: paired box protein Pax-7 isoform 1 [Gorilla gorilla
gorilla]
Length = 518
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 285 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 312
>gi|395742860|ref|XP_002821892.2| PREDICTED: LOW QUALITY PROTEIN: homeobox protein aristaless-like 4
[Pongo abelii]
Length = 407
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 222 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 280
>gi|301626102|ref|XP_002942237.1| PREDICTED: paired box protein Pax-7-like isoform 3 [Xenopus
(Silurana) tropicalis]
Length = 523
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 54 VIP 56
++P
Sbjct: 285 LLP 287
>gi|114635169|ref|XP_001138723.1| PREDICTED: dorsal root ganglia homeobox protein [Pan troglodytes]
Length = 268
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 48 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 98
>gi|53126008|emb|CAG25717.1| paired box protein 7 [Salvelinus alpinus]
Length = 502
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 226 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 285
Query: 54 VIP 56
++P
Sbjct: 286 LLP 288
>gi|332255913|ref|XP_003277070.1| PREDICTED: retina and anterior neural fold homeobox protein 2
isoform 1 [Nomascus leucogenys]
Length = 230
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF SHYPD+Y REELA + QVWFQNRRAK+R+QE+
Sbjct: 84 QLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER 133
>gi|126282720|ref|XP_001375386.1| PREDICTED: visual system homeobox 2-like [Monodelphis domestica]
Length = 368
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|432904372|ref|XP_004077298.1| PREDICTED: visual system homeobox 1-like [Oryzias latipes]
Length = 321
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 131 QLEELEKAFQEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 187
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 188 MAEYGLYGAMVRHSIP 203
>gi|410901020|ref|XP_003963994.1| PREDICTED: visual system homeobox 1-like [Takifugu rubripes]
Length = 366
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 168 QLEELEKAFQEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 224
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 225 MAEYGLYGAMVRHSIP 240
>gi|53125929|emb|CAG25521.1| paired box protein 7 [Salvelinus alpinus]
Length = 510
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 234 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 293
Query: 54 VIP 56
++P
Sbjct: 294 LLP 296
>gi|397497244|ref|XP_003819424.1| PREDICTED: retina and anterior neural fold homeobox protein 2
[Pan paniscus]
Length = 211
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF SHYPD+Y REELA + QVWFQNRRAK+R+QE+
Sbjct: 38 QLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER 87
>gi|331271832|gb|AED02521.1| paired box 7 protein [Coturnix japonica]
Length = 248
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 46/88 (52%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA---- 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 98 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 157
Query: 50 LTPSVIPTCNGAMM------RNIYPTTS 71
L P P + + YPTT+
Sbjct: 158 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 185
>gi|326925807|ref|XP_003209100.1| PREDICTED: paired box protein Pax-3-like [Meleagris gallopavo]
Length = 304
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 40/73 (54%), Gaps = 16/73 (21%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQ------ 47
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q
Sbjct: 74 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNH 133
Query: 48 ---KALTPSVIPT 57
PS +PT
Sbjct: 134 LIPGGFPPSAMPT 146
>gi|326920799|ref|XP_003206655.1| PREDICTED: visual system homeobox 2-like [Meleagris gallopavo]
Length = 373
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 174 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 230
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 231 MAEYGLYGAMVRHSIP 246
>gi|149024435|gb|EDL80932.1| similar to paired box gene 7 isoform 1 (predicted) [Rattus
norvegicus]
Length = 492
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 214 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 273
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 274 LLPGGFPPTGMPTLPPYQLPDSAYPTTT 301
>gi|117650669|gb|ABK54280.1| Pax3/7 [Branchiostoma belcheri]
Length = 470
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 204 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGAQQLAGFNH 263
Query: 54 VIP 56
++P
Sbjct: 264 LLP 266
>gi|432857459|ref|XP_004068691.1| PREDICTED: paired box protein Pax-7-like isoform 4 [Oryzias
latipes]
Length = 517
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 240 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 299
Query: 54 VIP 56
++P
Sbjct: 300 LLP 302
>gi|426377453|ref|XP_004055479.1| PREDICTED: visual system homeobox 2 [Gorilla gorilla gorilla]
Length = 361
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|24158435|ref|NP_571400.1| paired box 7 isoform 1 [Danio rerio]
gi|2909769|gb|AAC41255.1| transcription factor PAX7C [Danio rerio]
gi|122891363|emb|CAM12909.1| paired box gene 7 [Danio rerio]
gi|190337573|gb|AAI63502.1| Paired box gene 7a [Danio rerio]
gi|190337587|gb|AAI63523.1| Paired box gene 7a [Danio rerio]
Length = 507
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 230 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 289
Query: 54 VIP 56
++P
Sbjct: 290 LLP 292
>gi|397475296|ref|XP_003809079.1| PREDICTED: dorsal root ganglia homeobox protein [Pan paniscus]
Length = 265
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 45 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 95
>gi|395528443|ref|XP_003766339.1| PREDICTED: paired box protein Pax-7 [Sarcophilus harrisii]
Length = 637
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 359 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 418
Query: 54 VIP 56
++P
Sbjct: 419 LLP 421
>gi|351704314|gb|EHB07233.1| Homeobox protein aristaless-like 3 [Heterocephalus glaber]
Length = 332
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 161 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKMQEGRNP 220
>gi|348587018|ref|XP_003479265.1| PREDICTED: homeobox protein aristaless-like 3-like [Cavia
porcellus]
Length = 343
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 164 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKMQEGRNP 223
>gi|297695507|ref|XP_002824979.1| PREDICTED: visual system homeobox 2 [Pongo abelii]
Length = 361
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|431922297|gb|ELK19388.1| Retina and anterior neural fold homeobox protein 2 [Pteropus
alecto]
Length = 184
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF SHYPDIY REELA + QVWFQNRRAK+R+QE+
Sbjct: 38 QLHQLERAFEASHYPDIYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER 87
>gi|53125980|emb|CAG25715.1| paired box protein 7 [Salvelinus alpinus]
Length = 510
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 234 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 293
Query: 54 VIP 56
++P
Sbjct: 294 LLP 296
>gi|34365783|ref|NP_878314.1| visual system homeobox 2 [Homo sapiens]
gi|17374365|sp|P58304.1|VSX2_HUMAN RecName: Full=Visual system homeobox 2; AltName: Full=Ceh-10
homeodomain-containing homolog; AltName: Full=Homeobox
protein CHX10
gi|33285958|gb|AAQ01593.1| ceh-10 homeodomain containing protein [Homo sapiens]
gi|118764289|gb|AAI28154.1| Visual system homeobox 2 [Homo sapiens]
gi|119601570|gb|EAW81164.1| ceh-10 homeodomain containing homolog (C. elegans), isoform CRA_b
[Homo sapiens]
Length = 361
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|359682153|gb|AEV53628.1| paired box protein 7 [Sparus aurata]
Length = 502
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQGTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 54 VIP 56
++P
Sbjct: 285 LLP 287
>gi|327262713|ref|XP_003216168.1| PREDICTED: visual system homeobox 1-like [Anolis carolinensis]
Length = 371
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 187 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 243
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 244 MAEYGLYGAMVRHSIP 259
>gi|260178657|gb|ACX34051.1| paired box transcription factor 7 isoform 2 [Maylandia sp. 'Kompakt
Mbamba Bay']
Length = 505
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 228 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 287
Query: 54 VIP 56
++P
Sbjct: 288 LLP 290
>gi|242008856|ref|XP_002425213.1| Homeobox protein OTX2, putative [Pediculus humanus corporis]
gi|212508934|gb|EEB12475.1| Homeobox protein OTX2, putative [Pediculus humanus corporis]
Length = 152
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE+ F K+HYPD++ REE+A+ QVWFQNRRAK+RKQ +
Sbjct: 17 QQLQELESVFQKNHYPDVFVREEIALRINLSESRVQVWFQNRRAKWRKQAR 67
>gi|440808062|gb|AGC24174.1| Drgx [Lymnaea stagnalis]
Length = 416
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE AFA++HYPD++ RE+LA+ QVWFQNRRAK+RK E+
Sbjct: 58 QQLEELEKAFAQTHYPDVFMREDLAMRINLTEARVQVWFQNRRAKWRKSER 108
>gi|300794968|ref|NP_001180179.1| visual system homeobox 2 [Bos taurus]
gi|296483038|tpg|DAA25153.1| TPA: visual system homeobox 2-like [Bos taurus]
Length = 361
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|24158437|ref|NP_571407.1| paired box 7 isoform 2 [Danio rerio]
gi|2909771|gb|AAC41256.1| transcription factor PAX7D [Danio rerio]
Length = 487
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 36/56 (64%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 230 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLA 285
>gi|443733445|gb|ELU17800.1| hypothetical protein CAPTEDRAFT_30032, partial [Capitella teleta]
Length = 67
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
+QL ELE AF K+HYPDI+ RE+LA+ QVWFQNRRAK+RK+EK
Sbjct: 17 KQLHELERAFRKTHYPDIFMREKLAMRINLPESRIQVWFQNRRAKWRKREK 67
>gi|10863749|gb|AAG23961.1|AF294629_1 aristaless-like 4 [Homo sapiens]
Length = 410
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 225 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 283
>gi|355778727|gb|EHH63763.1| hypothetical protein EGM_16797 [Macaca fascicularis]
Length = 361
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|190337567|gb|AAI63492.1| Paired box gene 7a [Danio rerio]
Length = 395
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 230 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 289
Query: 54 VIP 56
++P
Sbjct: 290 LLP 292
>gi|109084302|ref|XP_001093608.1| PREDICTED: visual system homeobox 2-like [Macaca mulatta]
gi|402876695|ref|XP_003902092.1| PREDICTED: visual system homeobox 2 [Papio anubis]
Length = 361
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|1616751|gb|AAC52830.1| homeodomain protein Uncx-4.1 [Mus musculus]
Length = 196
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 10/72 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTP-- 52
QL ELE AF +SHYPD++ RE LA+ QVWFQNRRAK+RK+E + P
Sbjct: 12 QLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQNRRAKWRKKENTKKGPGRPAH 71
Query: 53 -SVIPTCNGAMM 63
S TC+G M
Sbjct: 72 NSHPTTCSGEPM 83
>gi|45383598|ref|NP_989600.1| paired box 3 [Gallus gallus]
gi|19032358|dbj|BAB85652.1| paired-box transcription factor protein PAX3 [Gallus gallus]
Length = 484
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 40/73 (54%), Gaps = 16/73 (21%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQ------ 47
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q
Sbjct: 229 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNH 288
Query: 48 ---KALTPSVIPT 57
PS +PT
Sbjct: 289 LIPGGFPPSAMPT 301
>gi|351712521|gb|EHB15440.1| Visual system homeobox 2 [Heterocephalus glaber]
Length = 356
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 154 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 210
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 211 MAEYGLYGAMVRHSIP 226
>gi|114653932|ref|XP_001156350.1| PREDICTED: visual system homeobox 2 [Pan troglodytes]
Length = 361
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|444511440|gb|ELV09886.1| Visual system homeobox 2 [Tupaia chinensis]
Length = 361
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|390470456|ref|XP_003734292.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein aristaless-like 4
[Callithrix jacchus]
Length = 415
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 229 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 287
>gi|390469312|ref|XP_003734085.1| PREDICTED: visual system homeobox 2 isoform 2 [Callithrix jacchus]
Length = 380
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|194753694|ref|XP_001959145.1| GF12207 [Drosophila ananassae]
gi|190620443|gb|EDV35967.1| GF12207 [Drosophila ananassae]
Length = 925
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 37/63 (58%), Gaps = 20/63 (31%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI--------------------LFQVWFQNRRAKYRK 41
QL ELE AF KSHYPD+Y REELA+ +VWFQNRRAK+R+
Sbjct: 571 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQLGLGNCLVCNSLKVWFQNRRAKWRR 630
Query: 42 QEK 44
QEK
Sbjct: 631 QEK 633
>gi|24158480|ref|NP_571401.1| paired box 7 isoform 3 [Danio rerio]
gi|2909773|gb|AAC41257.1| transcription factor PAX7E [Danio rerio]
Length = 395
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 230 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 289
Query: 54 VIP 56
++P
Sbjct: 290 LLP 292
>gi|348534162|ref|XP_003454572.1| PREDICTED: paired box protein Pax-7-like isoform 1 [Oreochromis
niloticus]
Length = 502
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 54 VIP 56
++P
Sbjct: 285 LLP 287
>gi|332223279|ref|XP_003260794.1| PREDICTED: visual system homeobox 2 [Nomascus leucogenys]
Length = 361
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|260178655|gb|ACX34050.1| paired box transcription factor 7 isoform 1 [Maylandia sp. 'Kompakt
Mbamba Bay']
Length = 502
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 54 VIP 56
++P
Sbjct: 285 LLP 287
>gi|348534168|ref|XP_003454575.1| PREDICTED: paired box protein Pax-7-like isoform 4 [Oreochromis
niloticus]
Length = 518
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 241 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 300
Query: 54 VIP 56
++P
Sbjct: 301 LLP 303
>gi|301615770|ref|XP_002937332.1| PREDICTED: homeobox protein aristaless-like 4-like [Xenopus
(Silurana) tropicalis]
Length = 360
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 197 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 255
>gi|190337325|gb|AAI62791.1| Dorsal root ganglia homeobox [Danio rerio]
gi|190340175|gb|AAI62787.1| Dorsal root ganglia homeobox [Danio rerio]
Length = 287
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 52 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 102
>gi|440902039|gb|ELR52885.1| Dorsal root ganglia homeobox protein, partial [Bos grunniens
mutus]
Length = 257
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 37 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 87
>gi|397497709|ref|XP_003819648.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein ARX [Pan paniscus]
Length = 633
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 7/63 (11%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK + P
Sbjct: 407 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTPPPVG 466
Query: 55 IPT 57
P+
Sbjct: 467 CPS 469
>gi|395827532|ref|XP_003786954.1| PREDICTED: visual system homeobox 2 [Otolemur garnettii]
Length = 360
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|348560754|ref|XP_003466178.1| PREDICTED: dorsal root ganglia homeobox protein-like [Cavia
porcellus]
Length = 263
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 43 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 93
>gi|109122933|ref|XP_001100945.1| PREDICTED: retina and anterior neural fold homeobox protein
2-like isoform 1 [Macaca mulatta]
gi|355702984|gb|EHH29475.1| Retina and anterior neural fold homeobox-like protein 1 [Macaca
mulatta]
gi|355755326|gb|EHH59073.1| Retina and anterior neural fold homeobox-like protein 1 [Macaca
fascicularis]
Length = 184
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF SHYPD+Y REELA + QVWFQNRRAK+R+QE+
Sbjct: 38 QLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER 87
>gi|6671750|ref|NP_031727.1| visual system homeobox 2 [Mus musculus]
gi|3023595|sp|Q61412.1|VSX2_MOUSE RecName: Full=Visual system homeobox 2; AltName: Full=Ceh-10
homeodomain-containing homolog; AltName: Full=Homeobox
protein CHX10
gi|623166|gb|AAA60431.1| homeobox protein [Mus musculus]
gi|21594726|gb|AAH31869.1| Visual system homeobox 2 [Mus musculus]
gi|37589096|gb|AAH51245.2| Visual system homeobox 2 [Mus musculus]
gi|74228635|dbj|BAE25386.1| unnamed protein product [Mus musculus]
gi|148670863|gb|EDL02810.1| C. elegans ceh-10 homeo domain containing homolog, isoform CRA_b
[Mus musculus]
Length = 361
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|18138028|emb|CAC80516.1| paired box protein [Mus musculus]
Length = 436
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 234 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFPNRRAKWRREEKLRNQRRQAS 293
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 294 NTPSHIP------ISSSFSTSV--YQPIPQPTT 318
>gi|432857457|ref|XP_004068690.1| PREDICTED: paired box protein Pax-7-like isoform 3 [Oryzias
latipes]
Length = 511
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 234 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 293
Query: 54 VIP 56
++P
Sbjct: 294 LLP 296
>gi|38325834|gb|AAR17089.1| goosecoid [Lytechinus variegatus]
Length = 327
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKA 49
EQL +LEA F K+HYP++ REELAI +VWF+NRRAK+RKQ+++ Q+A
Sbjct: 159 EQLEQLEATFEKTHYPNVMLREELAIKVDLKEERVEVWFKNRRAKWRKQKREQQEA 214
>gi|403287533|ref|XP_003934998.1| PREDICTED: paired box protein Pax-7 [Saimiri boliviensis
boliviensis]
Length = 502
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 36/56 (64%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLA 282
>gi|403276711|ref|XP_003930032.1| PREDICTED: dorsal root ganglia homeobox protein [Saimiri
boliviensis boliviensis]
Length = 268
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 48 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 98
>gi|348573366|ref|XP_003472462.1| PREDICTED: visual system homeobox 2 [Cavia porcellus]
Length = 360
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|301782923|ref|XP_002926876.1| PREDICTED: LOW QUALITY PROTEIN: paired box protein Pax-7-like
[Ailuropoda melanoleuca]
Length = 505
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 36/56 (64%), Gaps = 7/56 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLA 282
>gi|198469287|ref|XP_001354978.2| GA10896 [Drosophila pseudoobscura pseudoobscura]
gi|198146800|gb|EAL32034.2| GA10896 [Drosophila pseudoobscura pseudoobscura]
Length = 264
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELEA F K+HYPD++ REE+A+ QVWFQNRRAK+RKQ +
Sbjct: 34 QQLQELEALFQKTHYPDVFLREEVALRISLSEARVQVWFQNRRAKWRKQAR 84
>gi|148230462|ref|NP_001090191.1| visual system homeobox 1 [Xenopus laevis]
gi|123905790|sp|Q0P031.1|VSX1_XENLA RecName: Full=Visual system homeobox 1; AltName: Full=Transcription
factor vsx1; AltName: Full=Xvsx1
gi|84104901|gb|ABC54559.1| visual system homeobox 1 protein [Xenopus laevis]
Length = 344
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE +F ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 161 QLDELEKSFNEAHYPDVYAREMLALKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 217
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 218 MAEYGLYGAMVRHSIP 233
>gi|449275903|gb|EMC84639.1| Paired box protein Pax-7 [Columba livia]
Length = 524
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 46/88 (52%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA---- 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 50 LTPSVIPTCNGAMM------RNIYPTTS 71
L P P + + YPTT+
Sbjct: 285 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 312
>gi|432090369|gb|ELK23795.1| Homeobox protein aristaless-like 4 [Myotis davidii]
Length = 187
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 51 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 109
>gi|45384216|ref|NP_990396.1| paired box protein Pax-7 [Gallus gallus]
gi|2576239|dbj|BAA23005.1| PAX7 protein [Gallus gallus]
Length = 524
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 46/88 (52%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA---- 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 50 LTPSVIPTCNGAMM------RNIYPTTS 71
L P P + + YPTT+
Sbjct: 285 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 312
>gi|395535578|ref|XP_003769800.1| PREDICTED: homeobox protein aristaless-like 3 [Sarcophilus
harrisii]
Length = 357
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+
Sbjct: 178 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRER 227
>gi|317373355|sp|Q8BYH0.2|DRGX_MOUSE RecName: Full=Dorsal root ganglia homeobox protein; AltName:
Full=Dorsal root ganglion 11; AltName: Full=Homeobox
protein DRG11; AltName: Full=Paired-related homeobox
protein-like 1
gi|188036459|gb|ACD45984.1| paired related homeobox protein-like 1 [Mus musculus]
Length = 263
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 43 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 93
>gi|449266925|gb|EMC77903.1| Paired box protein Pax-3, partial [Columba livia]
Length = 459
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 40/73 (54%), Gaps = 16/73 (21%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQ------ 47
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q
Sbjct: 204 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNH 263
Query: 48 ---KALTPSVIPT 57
PS +PT
Sbjct: 264 LIPGGFPPSAMPT 276
>gi|426234271|ref|XP_004011120.1| PREDICTED: visual system homeobox 2 [Ovis aries]
Length = 295
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 74 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 130
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 131 MAEYGLYGAMVRHSIP 146
>gi|560583|gb|AAB30807.1| PAX7-FKHR=chimeric transcription factor(FKHR, PAX7) {translocation}
[human, alveolar rhabdomyosarcoma patient, Peptide, 420
aa]
Length = 420
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 200 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 259
Query: 54 VIP 56
++P
Sbjct: 260 LLP 262
>gi|326923683|ref|XP_003208064.1| PREDICTED: dorsal root ganglia homeobox protein-like [Meleagris
gallopavo]
Length = 299
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 82 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 132
>gi|291399413|ref|XP_002716105.1| PREDICTED: paired box 7 [Oryctolagus cuniculus]
Length = 497
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 219 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 278
Query: 54 VIP 56
++P
Sbjct: 279 LLP 281
>gi|410901415|ref|XP_003964191.1| PREDICTED: dorsal root ganglia homeobox protein-like [Takifugu
rubripes]
Length = 307
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 52 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 102
>gi|198432262|ref|XP_002120802.1| PREDICTED: transcription factor protein [Ciona intestinalis]
Length = 446
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 34/49 (69%), Gaps = 7/49 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQE 43
QL ELE AF SHYPD+Y RE LA+ QVWFQNRRAK+RK+E
Sbjct: 144 QLEELEKAFGNSHYPDVYMREALALRLDLVESRVQVWFQNRRAKWRKRE 192
>gi|149034141|gb|EDL88911.1| paired related homeobox protein-like 1, isoform CRA_a [Rattus
norvegicus]
Length = 253
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 43 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 93
>gi|2136302|pir||A45452 transcription factor PAX3 - human (fragments)
Length = 326
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 34/49 (69%), Gaps = 7/49 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQ 42
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 76 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 124
>gi|2145076|gb|AAB58415.1| paired-box transcription factor protein [Coturnix coturnix]
Length = 479
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 40/73 (54%), Gaps = 16/73 (21%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQ------ 47
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q
Sbjct: 224 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNH 283
Query: 48 ---KALTPSVIPT 57
PS +PT
Sbjct: 284 LIPGGFPPSAMPT 296
>gi|399146686|gb|AFP25465.1| paired box 3 [Anas platyrhynchos]
Length = 482
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 40/73 (54%), Gaps = 16/73 (21%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQ------ 47
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q
Sbjct: 227 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNH 286
Query: 48 ---KALTPSVIPT 57
PS +PT
Sbjct: 287 LIPGGFPPSAMPT 299
>gi|146325675|sp|A1YG25.1|RAX2_PANPA RecName: Full=Retina and anterior neural fold homeobox protein 2;
AltName: Full=Retina and anterior neural fold
homeobox-like protein 1
gi|121483898|gb|ABM54250.1| MGC15631 [Pan paniscus]
Length = 184
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF SHYPD+Y REELA + QVWFQNRRAK+R+QE+
Sbjct: 38 QLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER 87
>gi|119591196|gb|EAW70790.1| paired box gene 3 (Waardenburg syndrome 1), isoform CRA_b [Homo
sapiens]
Length = 330
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 34/49 (69%), Gaps = 7/49 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQ 42
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 80 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 128
>gi|125490351|ref|NP_001074956.1| retina and anterior neural fold homeobox protein 2 [Pan
troglodytes]
gi|146325676|sp|A2T711.1|RAX2_PANTR RecName: Full=Retina and anterior neural fold homeobox protein 2;
AltName: Full=Retina and anterior neural fold
homeobox-like protein 1
gi|124111168|gb|ABM91966.1| MGC15631 [Pan troglodytes]
Length = 184
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF SHYPD+Y REELA + QVWFQNRRAK+R+QE+
Sbjct: 38 QLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER 87
>gi|410919965|ref|XP_003973454.1| PREDICTED: paired box protein Pax-7-like [Takifugu rubripes]
Length = 447
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA---- 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 50 LTPSVIPTCNGAMM 63
L P P A +
Sbjct: 285 LLPGGFPPTGMATL 298
>gi|355558252|gb|EHH15032.1| hypothetical protein EGK_01064, partial [Macaca mulatta]
Length = 254
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 75 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKMQEGRNP 134
>gi|440909664|gb|ELR59549.1| Homeobox protein aristaless-like 3, partial [Bos grunniens mutus]
Length = 273
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 101 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP 160
>gi|402855587|ref|XP_003892401.1| PREDICTED: homeobox protein aristaless-like 3 [Papio anubis]
Length = 343
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 164 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKMQEGRNP 223
>gi|224051483|ref|XP_002199930.1| PREDICTED: uncharacterized protein LOC100220947 [Taeniopygia
guttata]
Length = 464
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 260 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 316
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 317 MAEYGLYGAMVRHSIP 332
>gi|281306708|ref|NP_001162599.1| visual system homeobox 2 [Rattus norvegicus]
gi|149025150|gb|EDL81517.1| ceh-10 homeo domain containing homolog (C. elegans), isoform CRA_a
[Rattus norvegicus]
Length = 361
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|55742834|ref|NP_001007013.1| homeobox protein aristaless-like 3 [Rattus norvegicus]
gi|40018990|gb|AAR37014.1| aristaless-related ALX3 [Rattus norvegicus]
Length = 343
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 164 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP 223
>gi|45382113|ref|NP_990099.1| visual system homeobox 2 [Gallus gallus]
gi|25008342|sp|Q9IAL1.1|VSX2_CHICK RecName: Full=Visual system homeobox 2; AltName: Full=Ceh-10
homeodomain-containing homolog; AltName: Full=Homeobox
protein CHX10
gi|7211448|gb|AAF40313.1|AF178671_1 homeobox protein Chx10 [Gallus gallus]
Length = 377
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 178 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 234
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 235 MAEYGLYGAMVRHSIP 250
>gi|444724758|gb|ELW65356.1| Homeobox protein aristaless-like 3 [Tupaia chinensis]
Length = 260
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 81 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP 140
>gi|345803688|ref|XP_547902.3| PREDICTED: visual system homeobox 2 isoform 1 [Canis lupus
familiaris]
Length = 361
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|348534164|ref|XP_003454573.1| PREDICTED: paired box protein Pax-7-like isoform 2 [Oreochromis
niloticus]
Length = 516
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 239 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 298
Query: 54 VIP 56
++P
Sbjct: 299 LLP 301
>gi|332017592|gb|EGI58292.1| Protein gooseberry-neuro [Acromyrmex echinatior]
Length = 302
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 7/65 (10%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL +LEAAF ++ YPD+Y REELA QVWF NRRA+ RK +Q +T
Sbjct: 54 EQLEQLEAAFQRAQYPDVYSREELAQRTGLTEARIQVWFSNRRARLRKHSGNIQHPVTNL 113
Query: 54 VIPTC 58
+ TC
Sbjct: 114 QLTTC 118
>gi|149737510|ref|XP_001490503.1| PREDICTED: visual system homeobox 2-like [Equus caballus]
Length = 361
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|148669964|gb|EDL01911.1| aristaless 3 [Mus musculus]
Length = 258
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 79 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKMQEGRNP 138
>gi|47220084|emb|CAG12232.1| unnamed protein product [Tetraodon nigroviridis]
Length = 229
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 17/79 (21%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF +SHYPD++ RE LA+ QVWFQNRRAK+RK+E + P+
Sbjct: 110 QLEELEKAFNESHYPDVFMREALALRLDLIESRVQVWFQNRRAKWRKKENTKKGPGRPA- 168
Query: 55 IPTCNGAMMRNIYPTTSRG 73
N +PTT G
Sbjct: 169 ---------HNAHPTTCSG 178
>gi|358253861|dbj|GAA53869.1| retinal homeobox protein Rax [Clonorchis sinensis]
Length = 440
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 36/51 (70%), Gaps = 7/51 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ 45
QL ELE AF SHYPD+ REELA + QVWFQNRRAK+R+QEKQ
Sbjct: 268 QLHELERAFEYSHYPDVMFREELAQKIRLPEVRVQVWFQNRRAKWRRQEKQ 318
>gi|357614930|gb|EHJ69376.1| hypothetical protein KGM_17721 [Danaus plexippus]
Length = 298
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL+ELE+ F K+HYPD++ REE+A+ QVWFQNRRAK+RKQ +
Sbjct: 34 QQLSELESLFQKTHYPDVFLREEVALRISLSEARVQVWFQNRRAKWRKQAR 84
>gi|307206696|gb|EFN84651.1| Homeobox protein goosecoid [Harpegnathos saltator]
Length = 351
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 7/57 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKAL 50
EQL +LEA F K+HYPD+ RE+LA+ +VWF+NRRAK+RKQ+++ Q L
Sbjct: 247 EQLEQLEATFDKTHYPDVLLREQLALQVDLKEERIEVWFKNRRAKWRKQKREEQDRL 303
>gi|14249388|ref|NP_116142.1| retina and anterior neural fold homeobox protein 2 [Homo sapiens]
gi|426386636|ref|XP_004059789.1| PREDICTED: retina and anterior neural fold homeobox protein 2
isoform 2 [Gorilla gorilla gorilla]
gi|74760880|sp|Q96IS3.1|RAX2_HUMAN RecName: Full=Retina and anterior neural fold homeobox protein 2;
AltName: Full=Q50-type retinal homeobox protein;
AltName: Full=Retina and anterior neural fold
homeobox-like protein 1
gi|13938311|gb|AAH07284.1| RAX2 protein [Homo sapiens]
gi|17511706|gb|AAH18709.1| Retina and anterior neural fold homeobox 2 [Homo sapiens]
gi|21619116|gb|AAH32512.1| Retina and anterior neural fold homeobox 2 [Homo sapiens]
gi|32395648|gb|AAP41547.1| Q50-type retinal homeobox [Homo sapiens]
Length = 184
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF SHYPD+Y REELA + QVWFQNRRAK+R+QE+
Sbjct: 38 QLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER 87
>gi|443734928|gb|ELU18784.1| hypothetical protein CAPTEDRAFT_147353, partial [Capitella teleta]
Length = 116
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL ELE AFA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 60 QQLEELEKAFAQTHYPDVFTREELAMRINLTEARVQVWFQNRRAKWRKSER 110
>gi|432098045|gb|ELK27932.1| Paired box protein Pax-7 [Myotis davidii]
Length = 592
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 350 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 409
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 410 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 437
>gi|68369878|ref|XP_695330.1| PREDICTED: homeobox protein aristaless-like 3-like [Danio rerio]
Length = 363
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+
Sbjct: 165 QLEELEKVFQKTHYPDVYAREQLALRTELTEARVQVWFQNRRAKWRKRER 214
>gi|555819|gb|AAA80574.1| paired box homeotic protein [Homo sapiens]
Length = 283
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 34/49 (69%), Gaps = 7/49 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQ 42
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 33 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 81
>gi|388240434|dbj|BAM15711.1| paired box gene 7 [Scyliorhinus torazame]
Length = 495
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALTPS 53
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 226 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 285
Query: 54 VIP 56
++P
Sbjct: 286 LLP 288
>gi|351711816|gb|EHB14735.1| Paired box protein Pax-7 [Heterocephalus glaber]
Length = 457
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 46/88 (52%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKA---- 49
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q A
Sbjct: 209 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 268
Query: 50 LTPSVIPTCNGAMM------RNIYPTTS 71
L P P + + YPTT+
Sbjct: 269 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 296
>gi|326919723|ref|XP_003206127.1| PREDICTED: paired box protein Pax-6-like [Meleagris gallopavo]
Length = 377
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 181 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 240
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 241 NTPSHIP------ISSSFSTSV--YQPIPQPTT 265
>gi|224059972|ref|XP_002194011.1| PREDICTED: paired box protein Pax-3 [Taeniopygia guttata]
Length = 529
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 40/73 (54%), Gaps = 16/73 (21%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQ------ 47
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ Q
Sbjct: 274 EQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNH 333
Query: 48 ---KALTPSVIPT 57
PS +PT
Sbjct: 334 LIPGGFPPSAMPT 346
>gi|62550676|gb|AAX88801.1| homeodomain transcription factor [Astyanax mexicanus]
Length = 378
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 168 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 224
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 225 MAEYGLYGAMVRHSIP 240
>gi|344254792|gb|EGW10896.1| Homeobox protein aristaless-like 3 [Cricetulus griseus]
Length = 200
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 21 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKMQEGRNP 80
>gi|194754287|ref|XP_001959427.1| GF12058 [Drosophila ananassae]
gi|190620725|gb|EDV36249.1| GF12058 [Drosophila ananassae]
Length = 217
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 35/50 (70%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE F ++HYPDIY REE+A QVWFQNRRAK+RKQE+
Sbjct: 122 QLNELEKIFLETHYPDIYTREEIASKLHLTEARVQVWFQNRRAKFRKQER 171
>gi|149025640|gb|EDL81883.1| rCG29053 [Rattus norvegicus]
Length = 343
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 164 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP 223
>gi|587456|emb|CAA57161.1| alx3 [Mesocricetus auratus]
Length = 346
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 167 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKMQEGRNP 226
>gi|32880216|ref|NP_872594.1| retina and anterior neural fold homeobox protein 2 [Bos taurus]
gi|75046044|sp|Q7YRX0.1|RAX2_BOVIN RecName: Full=Retina and anterior neural fold homeobox protein 2;
AltName: Full=Q50-type retinal homeobox protein;
AltName: Full=Retina and anterior neural fold
homeobox-like protein 1
gi|32395646|gb|AAP41546.1| Q50-type retinal homeobox [Bos taurus]
gi|296485724|tpg|DAA27839.1| TPA: retina and anterior neural fold homeobox protein 2 [Bos
taurus]
gi|440905907|gb|ELR56224.1| Retina and anterior neural fold homeobox protein 2 [Bos grunniens
mutus]
Length = 184
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL +LE AF SHYPD+Y REELA + QVWFQNRRAK+R+QE+
Sbjct: 38 QLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER 87
>gi|86355081|dbj|BAE78775.1| paired box containing Pax7 [Pelodiscus sinensis]
Length = 436
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 159 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 218
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 219 LLPGGFPPTGMPTLPPYQLPDATYPTTT 246
>gi|449784876|ref|NP_001263380.1| dorsal root ganglia homeobox protein [Homo sapiens]
gi|158513808|sp|A6NNA5.1|DRGX_HUMAN RecName: Full=Dorsal root ganglia homeobox protein; AltName:
Full=Paired-related homeobox protein-like 1
gi|119613506|gb|EAW93100.1| hCG32744 [Homo sapiens]
gi|261861218|dbj|BAI47131.1| dorsal root ganglia homeobox [synthetic construct]
Length = 263
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 43 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 93
>gi|4102043|gb|AAD01418.1| homeobox protein [Homo sapiens]
Length = 343
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 164 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP 223
>gi|113204604|ref|NP_006483.2| homeobox protein aristaless-like 3 [Homo sapiens]
gi|426330701|ref|XP_004026345.1| PREDICTED: homeobox protein aristaless-like 3 [Gorilla gorilla
gorilla]
gi|215273931|sp|O95076.2|ALX3_HUMAN RecName: Full=Homeobox protein aristaless-like 3; AltName:
Full=Proline-rich transcription factor ALX3
gi|85566666|gb|AAI12008.1| ALX3 protein [Homo sapiens]
gi|109731688|gb|AAI13429.1| ALX homeobox 3 [Homo sapiens]
gi|119576834|gb|EAW56430.1| aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 164 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP 223
>gi|354486037|ref|XP_003505188.1| PREDICTED: visual system homeobox 2-like [Cricetulus griseus]
gi|344245551|gb|EGW01655.1| Visual system homeobox 2 [Cricetulus griseus]
Length = 361
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|114559041|ref|XP_524801.2| PREDICTED: ALX homeobox 3 [Pan troglodytes]
Length = 343
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 164 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP 223
>gi|37590469|gb|AAH58806.1| Vsx2 protein [Mus musculus]
gi|148670862|gb|EDL02809.1| C. elegans ceh-10 homeo domain containing homolog, isoform CRA_a
[Mus musculus]
Length = 380
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>gi|47222353|emb|CAG05102.1| unnamed protein product [Tetraodon nigroviridis]
Length = 324
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 168 QLEELEKAFQEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 224
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 225 MAEYGLYGAMVRHSIP 240
>gi|7106250|ref|NP_031467.1| homeobox protein aristaless-like 3 [Mus musculus]
gi|13626105|sp|O70137.1|ALX3_MOUSE RecName: Full=Homeobox protein aristaless-like 3; AltName:
Full=Proline-rich transcription factor ALX3
gi|3041869|gb|AAC15094.1| proline-rich transcription factor ALX3 [Mus musculus]
gi|74206384|dbj|BAE24916.1| unnamed protein product [Mus musculus]
gi|146327428|gb|AAI41538.1| Aristaless-like homeobox 3 [synthetic construct]
Length = 343
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 164 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKMQEGRNP 223
>gi|338717161|ref|XP_001500343.3| PREDICTED: dorsal root ganglia homeobox protein-like [Equus
caballus]
Length = 265
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 45 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 95
>gi|296208775|ref|XP_002751237.1| PREDICTED: homeobox protein aristaless-like 3 [Callithrix jacchus]
Length = 343
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 164 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP 223
>gi|109013372|ref|XP_001099295.1| PREDICTED: ALX homeobox 3 [Macaca mulatta]
Length = 343
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 9/60 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALTP 52
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ ++Q+ P
Sbjct: 164 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKMQEGRNP 223
>gi|432905591|ref|XP_004077452.1| PREDICTED: dorsal root ganglia homeobox protein-like [Oryzias
latipes]
Length = 308
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 52 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 102
>gi|426256164|ref|XP_004021711.1| PREDICTED: dorsal root ganglia homeobox protein [Ovis aries]
Length = 305
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+QL LEA FA++HYPD++ REELA+ QVWFQNRRAK+RK E+
Sbjct: 43 QQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 93
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.130 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,983,417,218
Number of Sequences: 23463169
Number of extensions: 71108011
Number of successful extensions: 177321
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2453
Number of HSP's successfully gapped in prelim test: 4061
Number of HSP's that attempted gapping in prelim test: 170051
Number of HSP's gapped (non-prelim): 7026
length of query: 128
length of database: 8,064,228,071
effective HSP length: 94
effective length of query: 34
effective length of database: 10,153,657,481
effective search space: 345224354354
effective search space used: 345224354354
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)