BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3396
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O97039|RX_DUGJA Retinal homeobox protein Rax (Fragment) OS=Dugesia japonica GN=RAX
PE=2 SV=1
Length = 268
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 50/90 (55%), Gaps = 15/90 (16%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKALT--- 51
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK T
Sbjct: 98 QLHELERAFEKSHYPDVYSREELAMKISLPEVRVQVWFQNRRAKWRRQEKIEAANHTHNL 157
Query: 52 PSVIPTCNGAMMRNIYPTTSRGYQPYPHPN 81
V P ++ +++P PYP N
Sbjct: 158 QEVFPNVGKSLTSSLFPAN-----PYPFLN 182
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 539 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 588
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 148 QLHELERAFEKSHYPDVYSREELATKVNLPEVRVQVWFQNRRAKWRRQEK 197
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 39/56 (69%), Gaps = 7/56 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQLQKAL 50
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK A+
Sbjct: 153 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKMDASAV 208
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 146 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 195
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 148 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 197
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 141 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 190
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 141 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 190
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 133 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 182
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 148 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 197
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 117 QLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEK 166
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 147 QLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK 44
QL ELE AF KSHYPD+Y REELA + QVWFQNRRAK+R+QEK
Sbjct: 47 QLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 96
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 96 QLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 145
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
SV=1
Length = 314
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
SV=2
Length = 314
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 109 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
>sp|Q94398|HM08_CAEEL Homeobox protein ceh-8 OS=Caenorhabditis elegans GN=ceh-8 PE=4 SV=3
Length = 276
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 37/51 (72%), Gaps = 7/51 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ 45
QL LEAAF K+HYPD+Y RE LA + QVWFQNRRAK+R+QEKQ
Sbjct: 71 QLHALEAAFDKTHYPDVYARETLAAKVQLPEVRVQVWFQNRRAKFRRQEKQ 121
>sp|Q26602|SMOX3_SCHMA Homeobox protein SMOX-3 (Fragment) OS=Schistosoma mansoni
GN=SMOX-3 PE=2 SV=1
Length = 288
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 39/57 (68%), Gaps = 7/57 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALT 51
QL ELE AF ++HYPDIY RE+LA+ QVWFQNRRAK+RK E+ +Q T
Sbjct: 15 QLKELERAFQETHYPDIYTREDLALRIDLTEARVQVWFQNRRAKFRKTERVIQPDTT 71
>sp|Q9NZR4|VSX1_HUMAN Visual system homeobox 1 OS=Homo sapiens GN=VSX1 PE=1 SV=2
Length = 365
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 41/59 (69%), Gaps = 8/59 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK-QLQKALTP 52
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK LQ L P
Sbjct: 223 QLEELERAFCKTHYPDVFTREELAMRVDLTEARVQVWFQNRRAKWRKREKLGLQPRLHP 281
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
SV=1
Length = 280
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
SV=2
Length = 284
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
PE=2 SV=1
Length = 281
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE FA++HYPDIY REELA+ QVWFQNRRAK+RKQE+
Sbjct: 101 QLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
>sp|Q9GMA3|VSX1_BOVIN Visual system homeobox 1 OS=Bos taurus GN=VSX1 PE=2 SV=1
Length = 365
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF+++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK+ + SV
Sbjct: 175 QLEELEKAFSEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 231
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 232 MAEYGLYGAMVRHCIP 247
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 343 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 392
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 226 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 275
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF K+HYPD++ REELA+ QVWFQNRRAK+RK+EK
Sbjct: 341 QLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 390
>sp|Q91V10|VSX1_MOUSE Visual system homeobox 1 OS=Mus musculus GN=Vsx1 PE=2 SV=1
Length = 363
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA QVWFQNRRAK+RK+EK+ + SV
Sbjct: 182 QLEELEKAFGEAHYPDVYAREMLAAKTELPEDRIQVWFQNRRAKWRKREKRWGGS---SV 238
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 239 MAEYGLYGAMVRHCIP 254
>sp|Q63087|ALX1_RAT ALX homeobox protein 1 OS=Rattus norvegicus GN=Alx1 PE=2 SV=1
Length = 326
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>sp|Q9IAL2|VSX1_CHICK Visual system homeobox 1 OS=Gallus gallus GN=VSX1 PE=2 SV=1
Length = 350
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 168 QLEELEKAFNEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 224
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 225 MAEYGLYGAMVRHSIP 240
>sp|Q15699|ALX1_HUMAN ALX homeobox protein 1 OS=Homo sapiens GN=ALX1 PE=1 SV=2
Length = 326
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>sp|Q8C8B0|ALX1_MOUSE ALX homeobox protein 1 OS=Mus musculus GN=Alx1 PE=1 SV=1
Length = 326
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 143 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 199
>sp|Q91574|ALX1_XENLA ALX homeobox protein 1 OS=Xenopus laevis GN=alx1 PE=2 SV=1
Length = 335
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 9/57 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKA 49
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+A
Sbjct: 152 QLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQA 208
>sp|P47237|PAX6_CHICK Paired box protein Pax-6 (Fragment) OS=Gallus gallus GN=PAX6 PE=1
SV=1
Length = 216
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 20 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 79
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + ++ YQP P P T
Sbjct: 80 NTPSHIPISSSF--------STSVYQPIPQPTT 104
>sp|O42250|VSX1_DANRE Visual system homeobox 1 OS=Danio rerio GN=vsx1 PE=1 SV=2
Length = 344
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 162 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 218
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 219 MAEYGLYGAMVRHSIP 234
>sp|P63016|PAX6_RAT Paired box protein Pax-6 OS=Rattus norvegicus GN=Pax6 PE=2 SV=1
Length = 422
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>sp|Q1LZF1|PAX6_BOVIN Paired box protein Pax-6 OS=Bos taurus GN=PAX6 PE=2 SV=1
Length = 422
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>sp|P63015|PAX6_MOUSE Paired box protein Pax-6 OS=Mus musculus GN=Pax6 PE=1 SV=1
Length = 422
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>sp|P26367|PAX6_HUMAN Paired box protein Pax-6 OS=Homo sapiens GN=PAX6 PE=1 SV=2
Length = 422
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>sp|Q90277|VSX1_CARAU Visual system homeobox 1 OS=Carassius auratus GN=vsx1 PE=1 SV=1
Length = 341
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFHEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 211 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 269
>sp|P47239|PAX7_MOUSE Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=2 SV=2
Length = 503
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 225 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 284
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 285 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 312
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 213 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 271
>sp|O42477|VSX2_DANRE Visual system homeobox 2 OS=Danio rerio GN=vsx2 PE=2 SV=3
Length = 393
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 176 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 232
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 233 MAEYGLYGAMVRHSIP 248
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 9/59 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK--QLQKALT 51
QL ELE F K+HYPD+Y RE+LA+ QVWFQNRRAK+RK+E+ Q+Q+ T
Sbjct: 225 QLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRT 283
>sp|P47238|PAX6_COTJA Paired box protein Pax-6 OS=Coturnix coturnix japonica GN=PAX6 PE=2
SV=1
Length = 416
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + + + T+ YQP P P T
Sbjct: 280 NTPSHIP------ISSSFSTSV--YQPIPQPTT 304
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEKQ-------- 45
EQL ELE AF ++HYPDIY REELA QVWF NRRA++RKQ
Sbjct: 227 EQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNH 286
Query: 46 -LQKALTPSVIPTCNGAMMRN-IYPTTS 71
L P+ +PT + + YPTT+
Sbjct: 287 LLPGGFPPTGMPTLPPYQLPDSTYPTTT 314
>sp|P55864|PAX6_XENLA Paired box protein Pax-6 OS=Xenopus laevis GN=pax6 PE=2 SV=1
Length = 422
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 19/93 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQEK----QLQKA 49
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK + Q +
Sbjct: 220 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQAS 279
Query: 50 LTPSVIPTCNGAMMRNIYPTTSRGYQPYPHPNT 82
TPS IP + ++ YQP P P T
Sbjct: 280 NTPSHIPISSSF--------SASVYQPIPQPTT 304
>sp|P58304|VSX2_HUMAN Visual system homeobox 2 OS=Homo sapiens GN=VSX2 PE=1 SV=1
Length = 361
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 12/76 (15%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSV 54
QL ELE AF ++HYPD+Y RE LA+ QVWFQNRRAK+RK+EK ++ SV
Sbjct: 159 QLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRS---SV 215
Query: 55 IPTCN--GAMMRNIYP 68
+ GAM+R+ P
Sbjct: 216 MAEYGLYGAMVRHSIP 231
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,412,753
Number of Sequences: 539616
Number of extensions: 1656128
Number of successful extensions: 5159
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 524
Number of HSP's that attempted gapping in prelim test: 4532
Number of HSP's gapped (non-prelim): 874
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)