Query psy3396
Match_columns 128
No_of_seqs 162 out of 1201
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 23:56:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0850|consensus 99.8 1.7E-19 3.8E-24 134.0 8.1 50 2-51 133-189 (245)
2 KOG0484|consensus 99.8 1.5E-18 3.2E-23 115.0 9.2 49 2-50 28-83 (125)
3 KOG0489|consensus 99.8 8.7E-19 1.9E-23 134.4 6.5 49 1-49 169-224 (261)
4 KOG0488|consensus 99.7 7.8E-18 1.7E-22 131.7 5.5 48 2-49 183-237 (309)
5 KOG0842|consensus 99.7 3.2E-18 6.9E-23 132.9 2.8 46 1-46 163-215 (307)
6 KOG0491|consensus 99.7 3.5E-17 7.5E-22 116.5 5.4 59 1-59 110-175 (194)
7 KOG0487|consensus 99.7 1.7E-17 3.6E-22 129.0 2.8 45 2-46 246-297 (308)
8 KOG0844|consensus 99.7 2.5E-17 5.3E-22 127.1 2.2 50 1-50 191-247 (408)
9 KOG0492|consensus 99.7 1.1E-16 2.3E-21 117.7 4.7 49 1-49 154-209 (246)
10 KOG2251|consensus 99.6 8.8E-16 1.9E-20 113.7 6.8 46 1-46 47-99 (228)
11 KOG0848|consensus 99.6 2.5E-16 5.4E-21 119.5 3.2 45 2-46 210-261 (317)
12 KOG0843|consensus 99.6 9.6E-16 2.1E-20 110.4 4.0 45 1-45 112-163 (197)
13 KOG0486|consensus 99.6 8.8E-15 1.9E-19 113.2 8.3 47 1-47 122-175 (351)
14 KOG0494|consensus 99.6 2.2E-15 4.8E-20 114.1 4.7 44 2-45 152-202 (332)
15 KOG0485|consensus 99.6 1.4E-14 3.1E-19 107.3 8.7 47 2-48 115-168 (268)
16 PF00046 Homeobox: Homeobox do 99.5 5.7E-14 1.2E-18 84.0 4.4 41 1-41 10-57 (57)
17 KOG0493|consensus 99.5 3.2E-14 6.9E-19 108.0 3.4 42 1-42 256-304 (342)
18 KOG0483|consensus 99.4 2.1E-13 4.6E-18 100.6 2.8 43 1-43 60-109 (198)
19 COG5576 Homeodomain-containing 99.4 4.2E-13 9E-18 95.9 4.0 45 1-45 61-112 (156)
20 KOG0847|consensus 99.3 3.1E-12 6.7E-17 95.1 5.5 43 1-43 177-226 (288)
21 cd00086 homeodomain Homeodomai 99.3 3.3E-12 7.1E-17 76.3 4.6 41 1-41 10-57 (59)
22 smart00389 HOX Homeodomain. DN 99.3 2E-12 4.3E-17 76.7 3.6 40 1-40 10-56 (56)
23 KOG4577|consensus 99.3 4.5E-11 9.7E-16 92.1 9.8 45 1-45 177-228 (383)
24 KOG0490|consensus 99.2 3.3E-12 7.1E-17 95.1 1.9 44 1-44 70-120 (235)
25 TIGR01565 homeo_ZF_HD homeobox 99.1 7.9E-11 1.7E-15 71.0 2.6 35 1-35 11-56 (58)
26 KOG0849|consensus 99.0 6.7E-10 1.4E-14 88.7 7.2 45 1-45 186-237 (354)
27 KOG3802|consensus 98.8 6.8E-10 1.5E-14 88.6 0.9 43 2-44 305-354 (398)
28 KOG0775|consensus 98.6 2.2E-07 4.8E-12 71.3 8.7 38 4-41 189-233 (304)
29 KOG1168|consensus 98.2 5.3E-07 1.2E-11 69.9 2.0 42 4-45 322-370 (385)
30 KOG0774|consensus 97.8 0.00017 3.7E-09 55.4 9.1 40 4-43 201-250 (334)
31 PF05920 Homeobox_KN: Homeobox 97.8 2.9E-05 6.2E-10 43.4 2.9 27 12-38 7-40 (40)
32 KOG0490|consensus 97.6 6.1E-05 1.3E-09 55.9 3.2 44 1-44 163-213 (235)
33 KOG1146|consensus 96.1 0.0096 2.1E-07 54.4 5.2 46 1-46 913-965 (1406)
34 KOG2252|consensus 95.7 0.017 3.6E-07 48.6 4.6 39 1-39 430-475 (558)
35 PF11569 Homez: Homeodomain le 95.4 0.016 3.5E-07 34.5 2.5 34 3-36 10-50 (56)
36 KOG3623|consensus 93.7 0.12 2.6E-06 45.2 4.8 41 3-43 568-615 (1007)
37 PF03826 OAR: OAR domain; Int 92.4 0.0098 2.1E-07 28.5 -2.0 19 99-117 1-19 (21)
38 KOG0773|consensus 78.1 0.49 1.1E-05 37.5 -0.8 30 13-42 264-300 (342)
39 KOG3755|consensus 68.7 2.9 6.4E-05 36.1 1.5 18 27-44 742-759 (769)
40 PF10945 DUF2629: Protein of u 61.7 9.8 0.00021 21.5 2.3 29 3-31 6-36 (44)
41 KOG1924|consensus 59.3 1E+02 0.0022 28.2 9.0 9 33-41 491-499 (1102)
42 PF00424 REV: REV protein (ant 47.3 41 0.0009 21.9 3.8 34 6-47 17-51 (91)
43 PF12114 Period_C: Period prot 47.2 33 0.00071 25.5 3.8 30 3-33 126-155 (195)
44 PF11516 DUF3220: Protein of u 35.8 16 0.00035 23.4 0.5 11 27-37 32-42 (106)
45 PF08452 DNAP_B_exo_N: DNA pol 29.2 14 0.00031 17.6 -0.4 8 30-37 7-14 (22)
46 PF03457 HA: Helicase associat 27.6 57 0.0012 19.2 2.0 39 3-41 12-51 (68)
47 PF07954 DUF1689: Protein of u 24.5 97 0.0021 22.1 3.0 21 6-26 4-24 (152)
48 PF14354 Lar_restr_allev: Rest 23.8 24 0.00052 20.5 -0.2 9 27-37 53-61 (61)
49 PF05703 Auxin_canalis: Auxin 23.3 61 0.0013 24.9 1.9 16 27-42 102-117 (242)
50 KOG2066|consensus 22.5 1.2E+02 0.0027 27.4 3.8 41 6-46 512-559 (846)
51 PF15308 CEP170_C: CEP170 C-te 21.8 59 0.0013 28.6 1.7 24 21-44 612-635 (689)
52 KOG1146|consensus 20.8 85 0.0018 30.0 2.6 42 2-43 716-764 (1406)
No 1
>KOG0850|consensus
Probab=99.80 E-value=1.7e-19 Score=133.97 Aligned_cols=50 Identities=38% Similarity=0.632 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhhhhhcC
Q psy3396 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALT 51 (128)
Q Consensus 2 Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~~~~~~ 51 (128)
||..|.++|++++|+..++|+|||+ ||||||||||.|.||..+++....+
T Consensus 133 QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g~~~~e 189 (245)
T KOG0850|consen 133 QLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQGSGPVE 189 (245)
T ss_pred HHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcCCCccc
Confidence 8999999999999999999999999 9999999999999999996655543
No 2
>KOG0484|consensus
Probab=99.78 E-value=1.5e-18 Score=115.03 Aligned_cols=49 Identities=63% Similarity=1.045 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhhhhhc
Q psy3396 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKAL 50 (128)
Q Consensus 2 Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~~~~~ 50 (128)
||.+||+.|..+||||+.+|+|||. +|+|||||||+|+||+++.....+
T Consensus 28 QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr~a~~~~ 83 (125)
T KOG0484|consen 28 QLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQERAAIAKM 83 (125)
T ss_pred HHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 8999999999999999999999998 999999999999999998654433
No 3
>KOG0489|consensus
Probab=99.76 E-value=8.7e-19 Score=134.40 Aligned_cols=49 Identities=39% Similarity=0.564 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhhhhh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKA 49 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~~~~ 49 (128)
+||.+||++|..++|+++.+|.|||. ||||||||||+||||.++.....
T Consensus 169 ~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~~~~ 224 (261)
T KOG0489|consen 169 YQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAKSSQ 224 (261)
T ss_pred hhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccccc
Confidence 59999999999999999999999999 99999999999999987754443
No 4
>KOG0488|consensus
Probab=99.71 E-value=7.8e-18 Score=131.74 Aligned_cols=48 Identities=42% Similarity=0.621 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhhhhh
Q psy3396 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKA 49 (128)
Q Consensus 2 Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~~~~ 49 (128)
||.+||+.|++++|++..+|.+||+ |||+||||||+||||+...+.+.
T Consensus 183 Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~g~~~ 237 (309)
T KOG0488|consen 183 QLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAEGGEL 237 (309)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHhhhcc
Confidence 8999999999999999999999999 99999999999999987764443
No 5
>KOG0842|consensus
Probab=99.71 E-value=3.2e-18 Score=132.88 Aligned_cols=46 Identities=41% Similarity=0.613 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQL 46 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~ 46 (128)
.|+.|||++|+.++|++.++|++||. ||||||||||.|.||+++..
T Consensus 163 AQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk 215 (307)
T KOG0842|consen 163 AQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDK 215 (307)
T ss_pred hHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhh
Confidence 38999999999999999999999999 99999999999999987754
No 6
>KOG0491|consensus
Probab=99.69 E-value=3.5e-17 Score=116.46 Aligned_cols=59 Identities=36% Similarity=0.500 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhhhhhcCCCCCCCCC
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKALTPSVIPTCN 59 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~~~~~~~~~~~~~~ 59 (128)
.||..||++|++++|++.++|.|||. |||.||||||+|.||+.++.+....+.+.....
T Consensus 110 ~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~p~nS~~~t~~a~ 175 (194)
T KOG0491|consen 110 PQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQPKNSNGVTQKAS 175 (194)
T ss_pred ccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccc
Confidence 38899999999999999999999998 999999999999999998877655554444433
No 7
>KOG0487|consensus
Probab=99.67 E-value=1.7e-17 Score=128.96 Aligned_cols=45 Identities=38% Similarity=0.487 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhh
Q psy3396 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQL 46 (128)
Q Consensus 2 Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~ 46 (128)
|+.+||++|-.|.|++.+.|.||++ ||||||||||+|.||..+..
T Consensus 246 QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~ 297 (308)
T KOG0487|consen 246 QTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNREN 297 (308)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhh
Confidence 8999999999999999999999999 99999999999999987643
No 8
>KOG0844|consensus
Probab=99.66 E-value=2.5e-17 Score=127.06 Aligned_cols=50 Identities=40% Similarity=0.553 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhhhhhc
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKAL 50 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~~~~~ 50 (128)
|||..||++|.+.+|.++++|+|||+ .|||||||||+|+||++..+.+..
T Consensus 191 eQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRlamaWPh 247 (408)
T KOG0844|consen 191 EQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMAWPH 247 (408)
T ss_pred HHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhhhccCCC
Confidence 69999999999999999999999998 899999999999999988777755
No 9
>KOG0492|consensus
Probab=99.65 E-value=1.1e-16 Score=117.69 Aligned_cols=49 Identities=35% Similarity=0.569 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhhhhh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKA 49 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~~~~ 49 (128)
+||..||+.|+..+|+++.+|.|++. ||||||||||+|.||.++...+.
T Consensus 154 qQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQeae~Ek 209 (246)
T KOG0492|consen 154 QQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQEAELEK 209 (246)
T ss_pred HHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHHHHHH
Confidence 59999999999999999999999988 99999999999999987765443
No 10
>KOG2251|consensus
Probab=99.62 E-value=8.8e-16 Score=113.70 Aligned_cols=46 Identities=61% Similarity=0.999 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQL 46 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~ 46 (128)
+||.+||..|.+++|||+..|+|||. +|||||+|||+|+|+++++.
T Consensus 47 ~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 47 KQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred HHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 59999999999999999999999999 99999999999999988764
No 11
>KOG0848|consensus
Probab=99.61 E-value=2.5e-16 Score=119.53 Aligned_cols=45 Identities=49% Similarity=0.681 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhh
Q psy3396 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQL 46 (128)
Q Consensus 2 Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~ 46 (128)
|..+||++|..++|+++.++.|||. ||||||||||||+||..|.+
T Consensus 210 QRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk 261 (317)
T KOG0848|consen 210 QRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKK 261 (317)
T ss_pred hhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHH
Confidence 7889999999999999999999998 99999999999999987765
No 12
>KOG0843|consensus
Probab=99.59 E-value=9.6e-16 Score=110.44 Aligned_cols=45 Identities=42% Similarity=0.626 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
+||..||..|+.++|+...+|++||. ||||||||||.|.||.+..
T Consensus 112 ~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e 163 (197)
T KOG0843|consen 112 EQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQE 163 (197)
T ss_pred HHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHH
Confidence 59999999999999999999999999 9999999999999996654
No 13
>KOG0486|consensus
Probab=99.57 E-value=8.8e-15 Score=113.17 Aligned_cols=47 Identities=55% Similarity=0.990 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhhh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQ 47 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~~ 47 (128)
+||.+||..|++++|||..+|+|||. +|+|||+|||+||||++++..
T Consensus 122 qqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrErN~~ 175 (351)
T KOG0486|consen 122 QQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ 175 (351)
T ss_pred HHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhhhHH
Confidence 59999999999999999999999999 999999999999999988655
No 14
>KOG0494|consensus
Probab=99.57 E-value=2.2e-15 Score=114.09 Aligned_cols=44 Identities=68% Similarity=1.083 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 2 Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
||.+||+.|+..+|||+.-|+-||. +|+|||||||+||||.++.
T Consensus 152 Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~ 202 (332)
T KOG0494|consen 152 QLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKR 202 (332)
T ss_pred HHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhh
Confidence 8999999999999999999999988 9999999999999998875
No 15
>KOG0485|consensus
Probab=99.57 E-value=1.4e-14 Score=107.29 Aligned_cols=47 Identities=34% Similarity=0.532 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhhhh
Q psy3396 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQK 48 (128)
Q Consensus 2 Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~~~ 48 (128)
|+..||..|+..+|++..+|..||+ ||||||||||-||||+.....+
T Consensus 115 QV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aad~e 168 (268)
T KOG0485|consen 115 QVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAADLE 168 (268)
T ss_pred HHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhhhhh
Confidence 8999999999999999999999999 9999999999999998765433
No 16
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.47 E-value=5.7e-14 Score=83.96 Aligned_cols=41 Identities=51% Similarity=0.701 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRK 41 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr 41 (128)
+|+.+||..|..++||+..++++||. +|++||+|||.++||
T Consensus 10 ~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 10 EQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp HHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 48999999999999999999999999 999999999999986
No 17
>KOG0493|consensus
Probab=99.46 E-value=3.2e-14 Score=107.95 Aligned_cols=42 Identities=45% Similarity=0.723 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQ 42 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~ 42 (128)
|||+.|+.+|+.++|+...+|.+||. ||||||||+|+|.||-
T Consensus 256 eQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKs 304 (342)
T KOG0493|consen 256 EQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKS 304 (342)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhc
Confidence 69999999999999999999999998 9999999999999984
No 18
>KOG0483|consensus
Probab=99.38 E-value=2.1e-13 Score=100.59 Aligned_cols=43 Identities=35% Similarity=0.576 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+..||+.|+...++...++..||. ||+|||||||||||..+
T Consensus 60 eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kq 109 (198)
T KOG0483|consen 60 EQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQ 109 (198)
T ss_pred HHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchh
Confidence 69999999999999999999999999 99999999999999743
No 19
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.37 E-value=4.2e-13 Score=95.88 Aligned_cols=45 Identities=42% Similarity=0.682 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
+|+.+||+.|+.++||+..+|.+|+. -|||||||||++.|+....
T Consensus 61 ~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~ 112 (156)
T COG5576 61 EQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSG 112 (156)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhccc
Confidence 48999999999999999999999999 7999999999999986654
No 20
>KOG0847|consensus
Probab=99.31 E-value=3.1e-12 Score=95.13 Aligned_cols=43 Identities=42% Similarity=0.675 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+||..||+.|+.++|+-.++|.+||. +|||||||||.||||+.
T Consensus 177 ~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkh 226 (288)
T KOG0847|consen 177 HQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKH 226 (288)
T ss_pred hhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhh
Confidence 48999999999999999999999998 99999999999999854
No 21
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.31 E-value=3.3e-12 Score=76.26 Aligned_cols=41 Identities=56% Similarity=0.864 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRK 41 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr 41 (128)
+|+.+||..|..+.||+..++++||. +|++||+|||.+.++
T Consensus 10 ~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 10 EQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999 999999999999886
No 22
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.31 E-value=2e-12 Score=76.66 Aligned_cols=40 Identities=60% Similarity=0.909 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYR 40 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~k 40 (128)
+|+.+||..|..+.||+..++.+||. +|++||+|||++.|
T Consensus 10 ~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 10 EQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 48899999999999999999999999 99999999998854
No 23
>KOG4577|consensus
Probab=99.26 E-value=4.5e-11 Score=92.08 Aligned_cols=45 Identities=44% Similarity=0.683 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
.||+.|+..|+....|.+..|++|+. +|+|||||||||.||.+|.
T Consensus 177 KqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKD 228 (383)
T KOG4577|consen 177 KQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKD 228 (383)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhh
Confidence 48999999999999999999999998 8999999999999997764
No 24
>KOG0490|consensus
Probab=99.22 E-value=3.3e-12 Score=95.15 Aligned_cols=44 Identities=64% Similarity=0.937 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
.|+.+||+.|++++|||...|++||. .|+|||||||+||+++++
T Consensus 70 ~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 70 SQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred CHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 48999999999999999999999998 899999999999999875
No 25
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.07 E-value=7.9e-11 Score=71.04 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHhcCC----CCHHHHHHHHH-------HHHHhhhch
Q psy3396 1 EQLAELEAAFAKSHY----PDIYCREELAI-------LFQVWFQNR 35 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y----~~~~~r~~La~-------qVkiWFQNR 35 (128)
+|+..||..|+++.| ||..+|++||. +|||||||-
T Consensus 11 ~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~ 56 (58)
T TIGR01565 11 EQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNN 56 (58)
T ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccC
Confidence 599999999999999 99999999999 999999994
No 26
>KOG0849|consensus
Probab=99.03 E-value=6.7e-10 Score=88.69 Aligned_cols=45 Identities=56% Similarity=0.913 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
+|+..||+.|++++||++..|++||. +|+|||+|||+|++|+...
T Consensus 186 ~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~~ 237 (354)
T KOG0849|consen 186 SQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHRD 237 (354)
T ss_pred chHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhcccc
Confidence 58999999999999999999999999 9999999999999998754
No 27
>KOG3802|consensus
Probab=98.85 E-value=6.8e-10 Score=88.65 Aligned_cols=43 Identities=30% Similarity=0.414 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 2 Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
....||+.|.+|..|+..+.-+||. +|+|||+|||.|.||-..
T Consensus 305 vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 305 VRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRITP 354 (398)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCCC
Confidence 3578999999999999999999999 899999999999998443
No 28
>KOG0775|consensus
Probab=98.64 E-value=2.2e-07 Score=71.29 Aligned_cols=38 Identities=32% Similarity=0.524 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHH
Q psy3396 4 AELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRK 41 (128)
Q Consensus 4 ~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr 41 (128)
.+|.+-|..+.||+..++.|||+ ||-.||+|||.++|-
T Consensus 189 ~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 189 SLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhh
Confidence 57888999999999999999999 999999999999993
No 29
>KOG1168|consensus
Probab=98.23 E-value=5.3e-07 Score=69.86 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 4 AELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 4 ~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
+.||..|..+..|+.+..+.+|+ +|+|||+|.|.|.||....
T Consensus 322 RsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~~S 370 (385)
T KOG1168|consen 322 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKRS 370 (385)
T ss_pred ccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhhhh
Confidence 57999999999999999888888 8999999999999985543
No 30
>KOG0774|consensus
Probab=97.84 E-value=0.00017 Score=55.44 Aligned_cols=40 Identities=35% Similarity=0.601 Sum_probs=34.2
Q ss_pred HHHHHHHH---hcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 4 AELEAAFA---KSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 4 ~~Le~~F~---~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
++|...|. .+.||+.+.++|||. ||-.||.|+|-+.||..
T Consensus 201 eiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~ 250 (334)
T KOG0774|consen 201 EILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNM 250 (334)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhh
Confidence 56777775 467999999999999 89999999999999843
No 31
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.76 E-value=2.9e-05 Score=43.35 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=22.4
Q ss_pred hcCCCCHHHHHHHHH-------HHHHhhhchHHH
Q psy3396 12 KSHYPDIYCREELAI-------LFQVWFQNRRAK 38 (128)
Q Consensus 12 ~~~y~~~~~r~~La~-------qVkiWFQNRRak 38 (128)
.+.||+..++++||. ||..||-|.|.+
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 368999999999999 999999999864
No 32
>KOG0490|consensus
Probab=97.58 E-value=6.1e-05 Score=55.91 Aligned_cols=44 Identities=52% Similarity=0.773 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
.|+..|+..|..+.+|+...+++|+. .|+|||||+|++.++...
T Consensus 163 ~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 163 NQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred chhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 37889999999999999999999998 789999999999998654
No 33
>KOG1146|consensus
Probab=96.14 E-value=0.0096 Score=54.39 Aligned_cols=46 Identities=35% Similarity=0.457 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQL 46 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~ 46 (128)
+||..+...|....|+...+.|.|.. +|.|||||-|+|.|+...+.
T Consensus 913 ~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~n~ 965 (1406)
T KOG1146|consen 913 LQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKLNG 965 (1406)
T ss_pred HHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhhcc
Confidence 48899999999999988887777755 89999999999999977644
No 34
>KOG2252|consensus
Probab=95.73 E-value=0.017 Score=48.58 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKY 39 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~ 39 (128)
.|...|..+|+.+++|+.+..+.|+. .|.+||-|=|-+.
T Consensus 430 ~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 430 IQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 38899999999999999999999998 8999999987764
No 35
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=95.39 E-value=0.016 Score=34.52 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchH
Q psy3396 3 LAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRR 36 (128)
Q Consensus 3 l~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRR 36 (128)
+..|++.|...+++...+-.+|.. ||+.||--|+
T Consensus 10 ~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 10 IQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp -HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 356999999999999999999977 9999996554
No 36
>KOG3623|consensus
Probab=93.71 E-value=0.12 Score=45.22 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 3 LAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 3 l~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+..|+..|..+..|+..+-..+|. .||+||++++++..+-+
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv~ 615 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSVE 615 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhhc
Confidence 457899999999999998888877 89999999999987744
No 37
>PF03826 OAR: OAR domain; InterPro: IPR003654 This 14 amino acid motif has been identified within the C-terminal region of several Paired-like homeodomain (HD) containing proteins [, ]. It was named OAR domain after the initials of otp, aristaless, and rax []. Although it has been proposed that this domain could be important for transactivation and be involved in protein-protein interactions or DNA binding [, ], is function is not yet known. Some proteins known to contain a OAR domain include human RIEG, defects in which are the cause of Rieger syndrome []; human OG12X and Mus musculus (Mouse) Og12x, whose function is not yet known []; vertebrate Rax, which plays a role in the proliferation and/or differentiation of retinal cells []; Drosophila DRX, which appears to be important in brain development []; and human SHOX, encoded by the short stature homeobox-containing gene. Defects or lack of this protein are the cause of short stature associated with the Turner syndrome [].; GO: 0003677 DNA binding, 0007275 multicellular organismal development, 0005634 nucleus
Probab=92.37 E-value=0.0098 Score=28.47 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=16.1
Q ss_pred cccccccccccccCCCCCC
Q psy3396 99 DEWYNKSLSALRMNSSHHS 117 (128)
Q Consensus 99 ~~~~~~~l~alr~~~~~~~ 117 (128)
+++.+++|++|||++++|.
T Consensus 1 ~d~r~sSIa~LRlKAkeH~ 19 (21)
T PF03826_consen 1 RDRRSSSIAALRLKAKEHS 19 (21)
T ss_pred CCcchhhHHHHHHHHHHhc
Confidence 3678899999999998884
No 38
>KOG0773|consensus
Probab=78.11 E-value=0.49 Score=37.47 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=26.0
Q ss_pred cCCCCHHHHHHHHH-------HHHHhhhchHHHHHHH
Q psy3396 13 SHYPDIYCREELAI-------LFQVWFQNRRAKYRKQ 42 (128)
Q Consensus 13 ~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~ 42 (128)
..||+..++..||. ||.+||-|.|-+..+-
T Consensus 264 ~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p 300 (342)
T KOG0773|consen 264 HPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKP 300 (342)
T ss_pred CCCCcchhccccchhcCCCcccCCchhhhcccccCCc
Confidence 57999999999988 9999999999886553
No 39
>KOG3755|consensus
Probab=68.67 E-value=2.9 Score=36.11 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=15.8
Q ss_pred HHHHhhhchHHHHHHHHH
Q psy3396 27 LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 27 qVkiWFQNRRak~kr~~~ 44 (128)
-|+.||.|||++.|+.+.
T Consensus 742 n~~~~fk~~~ee~~~~k~ 759 (769)
T KOG3755|consen 742 NVQFWFKVRREEEKRLKM 759 (769)
T ss_pred chHHHHHHHHHHHhhhhc
Confidence 689999999999998654
No 40
>PF10945 DUF2629: Protein of unknown function (DUF2629); InterPro: IPR024487 Some members in this family of proteins are annotated as YhjR however currently no function is known.
Probab=61.67 E-value=9.8 Score=21.50 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHHh
Q psy3396 3 LAELEAAFAKSH--YPDIYCREELAILFQVW 31 (128)
Q Consensus 3 l~~Le~~F~~~~--y~~~~~r~~La~qVkiW 31 (128)
+..|.+.|.... |.|+...++|...|+-|
T Consensus 6 i~~L~~~fslp~~~Y~DIsr~e~l~~~~~RW 36 (44)
T PF10945_consen 6 IAALSQAFSLPDINYIDISREERLNQALQRW 36 (44)
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHHHHC
Confidence 678888988765 88999999998878877
No 41
>KOG1924|consensus
Probab=59.28 E-value=1e+02 Score=28.16 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=3.4
Q ss_pred hchHHHHHH
Q psy3396 33 QNRRAKYRK 41 (128)
Q Consensus 33 QNRRak~kr 41 (128)
|.--++.++
T Consensus 491 qe~qael~k 499 (1102)
T KOG1924|consen 491 QEAQAELQK 499 (1102)
T ss_pred HHHHHHHHH
Confidence 333344333
No 42
>PF00424 REV: REV protein (anti-repression trans-activator protein); InterPro: IPR000625 REV is a viral anti-repression trans-activator protein, which appears to act post-transcriptionally [] to relieve negative repression of GAG and ENV production. It is a phosphoprotein [, ] whose state of phosphorylation is mediated by a specific serine kinase activity present in the nucleus []. REV accumulates in the nucleoli [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1ETF_B 1ETG_B 1ULL_B 3LPH_B 2X7L_R.
Probab=47.35 E-value=41 Score=21.94 Aligned_cols=34 Identities=24% Similarity=0.579 Sum_probs=19.0
Q ss_pred HHHHHHhcCCCCHH-HHHHHHHHHHHhhhchHHHHHHHHHhhh
Q psy3396 6 LEAAFAKSHYPDIY-CREELAILFQVWFQNRRAKYRKQEKQLQ 47 (128)
Q Consensus 6 Le~~F~~~~y~~~~-~r~~La~qVkiWFQNRRak~kr~~~~~~ 47 (128)
..-.|+.+.||... +|.. . .|||-+||+.+.+..
T Consensus 17 Ik~LyqsnPyP~~~GTr~a--R------RnRRRRWR~rq~QI~ 51 (91)
T PF00424_consen 17 IKILYQSNPYPSPEGTRQA--R------RNRRRRWRARQRQIR 51 (91)
T ss_dssp HHHHHHTS-S--S-S-HHH--H------HHHHHHHHHHHHHHH
T ss_pred HHHHHccccCCCCCCcccc--c------cchhhhHHHHHHHHH
Confidence 34457778888643 2221 1 499999999887653
No 43
>PF12114 Period_C: Period protein 2/3C-terminal region; InterPro: IPR022728 This domain is found in eukaryotes and is typically between 164 to 200 amino acids in length. Sequences represented by this entry are found C-terminal to PF08447 from PFAM.
Probab=47.21 E-value=33 Score=25.50 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhh
Q psy3396 3 LAELEAAFAKSHYPDIYCREELAILFQVWFQ 33 (128)
Q Consensus 3 l~~Le~~F~~~~y~~~~~r~~La~qVkiWFQ 33 (128)
+..|+..=+.+..++..+|+||+ +|-.|.|
T Consensus 126 ~ekLk~mq~~QP~fs~~Qk~EL~-qvh~wiq 155 (195)
T PF12114_consen 126 REKLKSMQKQQPRFSNEQKEELA-QVHPWIQ 155 (195)
T ss_pred HHHHHHHHhhCCcchHHHHHHHH-HhhHHHH
Confidence 34555555567788899999999 8999975
No 44
>PF11516 DUF3220: Protein of unknown function (DUF3120); InterPro: IPR021597 This family of proteins with unknown function appears to be restricted to Bordetella. ; PDB: 2JPF_A.
Probab=35.83 E-value=16 Score=23.40 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=9.0
Q ss_pred HHHHhhhchHH
Q psy3396 27 LFQVWFQNRRA 37 (128)
Q Consensus 27 qVkiWFQNRRa 37 (128)
-||||.||--.
T Consensus 32 dvkvwmqnled 42 (106)
T PF11516_consen 32 DVKVWMQNLED 42 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 79999999543
No 45
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=29.22 E-value=14 Score=17.58 Aligned_cols=8 Identities=38% Similarity=1.053 Sum_probs=6.2
Q ss_pred HhhhchHH
Q psy3396 30 VWFQNRRA 37 (128)
Q Consensus 30 iWFQNRRa 37 (128)
.||.||..
T Consensus 7 NWFE~~ge 14 (22)
T PF08452_consen 7 NWFESRGE 14 (22)
T ss_pred ehhhhCCc
Confidence 69998864
No 46
>PF03457 HA: Helicase associated domain; InterPro: IPR005114 This short domain is found in multiple copies in bacterial helicase proteins. The domain is predicted to contain 3 alpha helices. The function of this domain may be to bind nucleic acid.; PDB: 2KTA_A.
Probab=27.58 E-value=57 Score=19.21 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHH-HHHHhhhchHHHHHH
Q psy3396 3 LAELEAAFAKSHYPDIYCREELAI-LFQVWFQNRRAKYRK 41 (128)
Q Consensus 3 l~~Le~~F~~~~y~~~~~r~~La~-qVkiWFQNRRak~kr 41 (128)
+.+|..........+++....-.. .+..|..+.|.+.|+
T Consensus 12 ~~~l~~y~~~~G~~~vp~~~~~~~~~Lg~Wl~~qR~~~r~ 51 (68)
T PF03457_consen 12 YEALKAYKEEHGHLNVPRDYVTDGFPLGQWLNNQRRKYRK 51 (68)
T ss_dssp HHHHHHHHHHHS--S-SS-----SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcccCcCCCcHHHHHHHHHHHHHc
Confidence 345555555555444443322112 788999999999887
No 47
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=24.54 E-value=97 Score=22.09 Aligned_cols=21 Identities=24% Similarity=0.050 Sum_probs=18.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHH
Q psy3396 6 LEAAFAKSHYPDIYCREELAI 26 (128)
Q Consensus 6 Le~~F~~~~y~~~~~r~~La~ 26 (128)
.-+.++.++.++..+|.+|+.
T Consensus 4 av~FYEaD~~L~~~DR~eL~~ 24 (152)
T PF07954_consen 4 AVEFYEADQKLDHEDRLELAK 24 (152)
T ss_pred HHHHHHhhccCCHHHHHHHHH
Confidence 456789999999999999998
No 48
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=23.80 E-value=24 Score=20.47 Aligned_cols=9 Identities=56% Similarity=1.162 Sum_probs=7.3
Q ss_pred HHHHhhhchHH
Q psy3396 27 LFQVWFQNRRA 37 (128)
Q Consensus 27 qVkiWFQNRRa 37 (128)
-|..| |||+
T Consensus 53 Ai~~W--N~Ra 61 (61)
T PF14354_consen 53 AIEAW--NRRA 61 (61)
T ss_pred HHHHH--cCCC
Confidence 68888 8885
No 49
>PF05703 Auxin_canalis: Auxin canalisation; InterPro: IPR008546 This domain consists of several plant proteins of unknown function.
Probab=23.30 E-value=61 Score=24.92 Aligned_cols=16 Identities=19% Similarity=0.640 Sum_probs=12.8
Q ss_pred HHHHhhhchHHHHHHH
Q psy3396 27 LFQVWFQNRRAKYRKQ 42 (128)
Q Consensus 27 qVkiWFQNRRak~kr~ 42 (128)
.|+.||+.|+.|.|.+
T Consensus 102 ~i~~w~~~~~~kkkee 117 (242)
T PF05703_consen 102 TIGRWLKDRKEKKKEE 117 (242)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7899999999965543
No 50
>KOG2066|consensus
Probab=22.50 E-value=1.2e+02 Score=27.35 Aligned_cols=41 Identities=5% Similarity=-0.197 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhh
Q psy3396 6 LEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQL 46 (128)
Q Consensus 6 Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~ 46 (128)
+|-.|..++|+++..+.-.+. ..|.||-|++.+......+.
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk~~~vf~lI~k~nL~d~i~~~Iv~Lmll 559 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQDKDVFDLIKKHNLFDQIKDQIVLLMLL 559 (846)
T ss_pred HHHHHHccChHHHHHHHHhccChHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 345678888988887776655 67999999999987766543
No 51
>PF15308 CEP170_C: CEP170 C-terminus
Probab=21.76 E-value=59 Score=28.64 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHH
Q psy3396 21 REELAILFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 21 r~~La~qVkiWFQNRRak~kr~~~ 44 (128)
-+.||..|||-|||+.-.|--.+-
T Consensus 612 te~la~KikiLFq~~~r~WeeiEa 635 (689)
T PF15308_consen 612 TEKLAEKIKILFQDKERNWEEIEA 635 (689)
T ss_pred HHHhhhhheeeecccccchHHHHH
Confidence 345566999999999988776443
No 52
>KOG1146|consensus
Probab=20.80 E-value=85 Score=29.98 Aligned_cols=42 Identities=26% Similarity=0.475 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 2 QLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 2 Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
++..|-..|-.+.-|+...+..|.. ++.+||+|-|.+.++..
T Consensus 716 aa~~l~~a~~~~~sps~k~~~civcd~~st~~l~~l~~h~~~~rs~ke~ 764 (1406)
T KOG1146|consen 716 AAMILGRAYMQDNSPSLKVFDCIVCDVFSTDRLDQLWFHNTRERSRKEQ 764 (1406)
T ss_pred HHhhhhhcccCCCCHHHHHHHHhhhhhhhhhhHHHHhhcchhhhhhhhc
Confidence 5566777788888888888888876 78999999999988865
Done!