Query psy3396
Match_columns 128
No_of_seqs 162 out of 1201
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 23:56:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nau_A Zinc fingers and homeob 99.7 2.3E-18 7.8E-23 105.4 5.2 43 1-43 14-63 (66)
2 3a03_A T-cell leukemia homeobo 99.7 2.6E-18 8.9E-23 102.2 5.3 42 1-42 7-55 (56)
3 2ecb_A Zinc fingers and homeob 99.7 1.3E-18 4.3E-23 112.8 3.8 44 1-44 21-71 (89)
4 2cue_A Paired box protein PAX6 99.7 8.3E-18 2.8E-22 106.7 6.8 49 1-49 17-72 (80)
5 2ecc_A Homeobox and leucine zi 99.7 6.2E-18 2.1E-22 106.4 5.1 43 1-43 13-62 (76)
6 1x2m_A LAG1 longevity assuranc 99.7 3.4E-18 1.2E-22 104.4 3.3 41 1-41 10-58 (64)
7 3a02_A Homeobox protein arista 99.7 6.2E-18 2.1E-22 101.7 4.2 44 1-44 9-59 (60)
8 2dmp_A Zinc fingers and homeob 99.7 6.4E-18 2.2E-22 109.4 3.8 45 1-45 23-74 (89)
9 2dmq_A LIM/homeobox protein LH 99.7 2E-17 7E-22 104.8 6.1 45 1-45 17-68 (80)
10 2dms_A Homeobox protein OTX2; 99.7 6.9E-18 2.4E-22 107.1 3.8 45 1-45 17-68 (80)
11 1puf_A HOX-1.7, homeobox prote 99.7 1.8E-17 6E-22 104.5 5.6 45 1-45 23-74 (77)
12 2h1k_A IPF-1, pancreatic and d 99.7 1.3E-17 4.5E-22 101.3 4.7 43 1-43 13-62 (63)
13 1nk2_P Homeobox protein VND; h 99.7 3E-17 1E-21 103.5 6.1 45 1-45 19-70 (77)
14 1zq3_P PRD-4, homeotic bicoid 99.7 1.9E-17 6.6E-22 102.0 5.1 46 1-46 12-64 (68)
15 1ig7_A Homeotic protein MSX-1; 99.7 2.5E-17 8.5E-22 98.3 5.2 41 1-41 10-57 (58)
16 2hdd_A Protein (engrailed home 99.7 2E-17 6.8E-22 99.8 4.6 41 1-41 13-60 (61)
17 2l9r_A Homeobox protein NKX-3. 99.7 8.7E-18 3E-22 104.1 2.9 43 1-43 14-63 (69)
18 2cqx_A LAG1 longevity assuranc 99.7 1.1E-17 3.8E-22 104.4 3.0 41 1-41 18-66 (72)
19 1ahd_P Antennapedia protein mu 99.7 9.3E-18 3.2E-22 103.5 2.5 44 1-44 12-62 (68)
20 1uhs_A HOP, homeodomain only p 99.7 3.7E-17 1.3E-21 101.7 5.3 43 1-43 11-61 (72)
21 2da5_A Zinc fingers and homeob 99.7 9.9E-18 3.4E-22 105.3 2.4 44 1-44 17-67 (75)
22 2hi3_A Homeodomain-only protei 99.7 3.9E-17 1.3E-21 101.9 5.1 44 1-44 12-63 (73)
23 2dmu_A Homeobox protein goosec 99.7 4E-17 1.4E-21 101.0 5.1 43 1-43 17-66 (70)
24 1jgg_A Segmentation protein EV 99.7 3.3E-17 1.1E-21 98.5 4.6 42 1-42 11-59 (60)
25 2vi6_A Homeobox protein nanog; 99.7 9.8E-18 3.4E-22 101.5 2.2 42 1-42 13-61 (62)
26 2e1o_A Homeobox protein PRH; D 99.7 4.7E-17 1.6E-21 100.7 5.3 43 1-43 17-66 (70)
27 2dmt_A Homeobox protein BARH-l 99.7 2E-17 7E-22 104.9 3.6 43 1-43 27-76 (80)
28 1ftt_A TTF-1 HD, thyroid trans 99.7 2.4E-17 8.4E-22 101.5 3.4 44 1-44 12-62 (68)
29 2e19_A Transcription factor 8; 99.7 1.3E-17 4.3E-22 101.9 2.1 41 1-41 13-60 (64)
30 3a01_A Homeodomain-containing 99.7 4.5E-17 1.5E-21 106.2 4.8 45 1-45 27-78 (93)
31 1fjl_A Paired protein; DNA-bin 99.7 8.4E-17 2.9E-21 102.2 5.8 45 1-45 28-79 (81)
32 1b8i_A Ultrabithorax, protein 99.7 2.8E-17 9.7E-22 104.5 3.6 43 1-43 30-79 (81)
33 2cra_A Homeobox protein HOX-B1 99.7 2.3E-17 7.9E-22 102.1 2.8 43 1-43 17-66 (70)
34 2r5y_A Homeotic protein sex co 99.7 2.1E-17 7.2E-22 106.6 2.8 42 1-42 38-86 (88)
35 2da3_A Alpha-fetoprotein enhan 99.7 6.5E-17 2.2E-21 102.3 4.9 43 1-43 27-76 (80)
36 2kt0_A Nanog, homeobox protein 99.7 8E-18 2.7E-22 107.6 0.7 44 1-44 32-82 (84)
37 1b72_A Protein (homeobox prote 99.7 5.7E-17 1.9E-21 106.4 4.6 45 1-45 44-95 (97)
38 2da2_A Alpha-fetoprotein enhan 99.7 4.5E-17 1.5E-21 100.7 3.6 43 1-43 17-66 (70)
39 2l7z_A Homeobox protein HOX-A1 99.7 6E-17 2E-21 101.1 4.1 43 1-43 17-66 (73)
40 2ly9_A Zinc fingers and homeob 99.7 2.5E-17 8.7E-22 102.9 2.3 44 1-44 16-66 (74)
41 1yz8_P Pituitary homeobox 2; D 99.7 1.6E-17 5.5E-22 102.3 1.3 45 1-45 13-64 (68)
42 2dn0_A Zinc fingers and homeob 99.6 1.3E-17 4.4E-22 104.9 0.4 44 1-44 18-68 (76)
43 2da1_A Alpha-fetoprotein enhan 99.6 5.7E-17 1.9E-21 100.3 3.3 43 1-43 17-66 (70)
44 3rkq_A Homeobox protein NKX-2. 99.6 9E-17 3.1E-21 95.6 3.9 40 1-40 12-58 (58)
45 2djn_A Homeobox protein DLX-5; 99.6 3.9E-17 1.3E-21 101.1 2.1 42 1-42 17-65 (70)
46 1wh5_A ZF-HD homeobox family p 99.6 3E-17 1E-21 104.4 1.1 41 1-41 27-78 (80)
47 1bw5_A ISL-1HD, insulin gene e 99.6 9.3E-17 3.2E-21 98.3 3.0 42 1-42 13-61 (66)
48 2k40_A Homeobox expressed in E 99.6 1.9E-16 6.3E-21 97.2 4.0 44 1-44 11-61 (67)
49 2da4_A Hypothetical protein DK 99.6 9.9E-17 3.4E-21 101.7 2.8 42 1-42 18-70 (80)
50 2m0c_A Homeobox protein arista 99.6 2E-16 6.9E-21 98.8 3.8 44 1-44 19-69 (75)
51 1k61_A Mating-type protein alp 99.6 3.1E-16 1.1E-20 94.2 4.4 41 1-41 8-58 (60)
52 1akh_A Protein (mating-type pr 99.6 3E-16 1E-20 94.5 4.0 40 1-40 15-61 (61)
53 3nar_A ZHX1, zinc fingers and 99.6 3.7E-16 1.3E-20 102.3 4.1 42 1-42 35-83 (96)
54 2cuf_A FLJ21616 protein; homeo 99.6 1.2E-15 4E-20 99.7 6.2 45 1-45 17-83 (95)
55 1wh7_A ZF-HD homeobox family p 99.6 9.1E-17 3.1E-21 102.2 0.2 40 1-41 27-78 (80)
56 2da6_A Hepatocyte nuclear fact 99.6 4.1E-15 1.4E-19 98.3 7.4 48 1-48 16-91 (102)
57 1b72_B Protein (PBX1); homeodo 99.6 6.3E-16 2.2E-20 99.3 3.2 46 1-46 11-66 (87)
58 1puf_B PRE-B-cell leukemia tra 99.6 9.6E-16 3.3E-20 95.5 3.7 44 1-44 11-64 (73)
59 1x2n_A Homeobox protein pknox1 99.6 2.6E-15 8.9E-20 93.5 5.2 43 1-43 17-69 (73)
60 1du6_A PBX1, homeobox protein 99.6 7.6E-16 2.6E-20 93.6 2.1 41 1-41 13-63 (64)
61 1le8_B Mating-type protein alp 99.6 2.2E-15 7.5E-20 96.2 4.2 43 1-43 12-64 (83)
62 1mnm_C Protein (MAT alpha-2 tr 99.5 5.1E-15 1.7E-19 95.1 4.5 40 1-40 37-86 (87)
63 1e3o_C Octamer-binding transcr 99.5 3.2E-15 1.1E-19 106.1 3.9 42 1-42 111-159 (160)
64 2xsd_C POU domain, class 3, tr 99.5 3.2E-15 1.1E-19 106.6 3.8 44 1-44 109-159 (164)
65 2dmn_A Homeobox protein TGIF2L 99.5 9E-15 3.1E-19 93.4 5.2 44 1-44 17-70 (83)
66 1au7_A Protein PIT-1, GHF-1; c 99.5 3.8E-15 1.3E-19 104.4 3.4 42 1-42 97-145 (146)
67 3k2a_A Homeobox protein MEIS2; 99.5 1.2E-14 4.1E-19 89.3 4.4 43 1-43 8-60 (67)
68 3l1p_A POU domain, class 5, tr 99.5 8.2E-15 2.8E-19 103.5 2.5 42 1-42 106-154 (155)
69 1wi3_A DNA-binding protein SAT 99.5 3.6E-14 1.2E-18 86.9 4.3 39 1-39 17-63 (71)
70 2da7_A Zinc finger homeobox pr 99.5 4.6E-14 1.6E-18 86.9 4.6 38 1-38 15-59 (71)
71 2d5v_A Hepatocyte nuclear fact 99.4 2.8E-14 9.6E-19 101.4 2.4 43 1-43 107-156 (164)
72 1lfb_A Liver transcription fac 99.4 1.9E-14 6.5E-19 94.8 1.1 44 1-44 19-90 (99)
73 2lk2_A Homeobox protein TGIF1; 99.3 3.1E-12 1.1E-16 82.5 7.6 45 1-45 15-69 (89)
74 2nzz_A Penetratin conjugated G 99.2 2.7E-12 9.2E-17 69.8 0.5 21 27-47 2-22 (37)
75 3d1n_I POU domain, class 6, tr 96.4 0.0024 8.4E-08 44.1 3.3 28 1-28 103-130 (151)
76 2h8r_A Hepatocyte nuclear fact 96.3 0.0029 9.8E-08 46.7 3.3 28 1-28 152-179 (221)
77 1ic8_A Hepatocyte nuclear fact 95.8 0.0031 1.1E-07 45.6 1.5 28 1-28 125-152 (194)
78 1mh3_A Maltose binding-A1 home 95.2 0.012 4.1E-07 45.6 3.3 29 1-29 375-403 (421)
79 2ys9_A Homeobox and leucine zi 93.3 0.088 3E-06 31.9 3.4 30 4-33 19-55 (70)
80 1etf_B REV peptide; complex (R 42.8 17 0.00059 17.4 1.9 16 33-48 7-22 (26)
81 2jpf_A Hypothetical protein; a 32.3 12 0.00043 23.7 0.5 11 27-37 53-63 (127)
82 2x7l_M HIV REV; nuclear export 31.3 26 0.00087 22.9 1.9 34 7-47 19-52 (115)
83 3i5q_B Nucleoporin NUP170; hel 25.9 1.2E+02 0.004 22.3 5.0 33 3-35 177-209 (252)
84 3lph_A Protein REV; helix-loop 25.7 39 0.0013 20.2 1.9 35 6-47 21-55 (72)
No 1
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.74 E-value=2.3e-18 Score=105.37 Aligned_cols=43 Identities=30% Similarity=0.492 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+||.+||..|..++||+..+|++||. +|+|||||||+|+|+..
T Consensus 14 ~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 14 EQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp HHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 59999999999999999999999999 99999999999999754
No 2
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=102.15 Aligned_cols=42 Identities=43% Similarity=0.676 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQ 42 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~ 42 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+||+
T Consensus 7 ~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 7 SQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 48999999999999999999999999 9999999999999985
No 3
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.3e-18 Score=112.84 Aligned_cols=44 Identities=25% Similarity=0.322 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
+||.+||..|..++||+..+|++||. ||+|||||||+|+|+.++
T Consensus 21 ~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 21 EQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 49999999999999999999999999 999999999999998554
No 4
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=8.3e-18 Score=106.73 Aligned_cols=49 Identities=51% Similarity=0.948 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhhhhh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQLQKA 49 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~~~~ 49 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+|+.++.....
T Consensus 17 ~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~~ 72 (80)
T 2cue_A 17 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQR 72 (80)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhcc
Confidence 48999999999999999999999999 99999999999999988765543
No 5
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=6.2e-18 Score=106.45 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+||.+||+.|..++||+..+|++||. +|+|||||||+|+|+.+
T Consensus 13 ~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 13 EQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 59999999999999999999999999 99999999999999853
No 6
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=3.4e-18 Score=104.37 Aligned_cols=41 Identities=34% Similarity=0.445 Sum_probs=38.4
Q ss_pred ChHHHHHHHH-HhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHH
Q psy3396 1 EQLAELEAAF-AKSHYPDIYCREELAI-------LFQVWFQNRRAKYRK 41 (128)
Q Consensus 1 ~Ql~~Le~~F-~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr 41 (128)
+|+.+||+.| ..++||+..+|++||. ||+|||||||+|+|+
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 5899999999 5799999999999999 999999999999885
No 7
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.71 E-value=6.2e-18 Score=101.73 Aligned_cols=44 Identities=70% Similarity=1.150 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+|+.++
T Consensus 9 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 9 FQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 48999999999999999999999999 999999999999998654
No 8
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.4e-18 Score=109.44 Aligned_cols=45 Identities=29% Similarity=0.462 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
+||.+||..|..++||+..+|++||. +|+|||||||+|+|+.++.
T Consensus 23 ~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 23 GQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSC
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHh
Confidence 48999999999999999999999999 9999999999999985543
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=104.75 Aligned_cols=45 Identities=42% Similarity=0.671 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+||....
T Consensus 17 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 17 HQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 48999999999999999999999999 9999999999999997654
No 10
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=6.9e-18 Score=107.06 Aligned_cols=45 Identities=62% Similarity=0.999 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+|+.++.
T Consensus 17 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 17 AQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 48999999999999999999999999 9999999999999996543
No 11
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.70 E-value=1.8e-17 Score=104.50 Aligned_cols=45 Identities=40% Similarity=0.523 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+|+..+.
T Consensus 23 ~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 23 HQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 48999999999999999999999999 9999999999999998765
No 12
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.70 E-value=1.3e-17 Score=101.26 Aligned_cols=43 Identities=47% Similarity=0.719 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+|+.+
T Consensus 13 ~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 13 AQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 48999999999999999999999999 99999999999999863
No 13
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.69 E-value=3e-17 Score=103.46 Aligned_cols=45 Identities=36% Similarity=0.555 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+|+....
T Consensus 19 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 19 AQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 48999999999999999999999999 9999999999999997664
No 14
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=1.9e-17 Score=102.00 Aligned_cols=46 Identities=33% Similarity=0.541 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQL 46 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~ 46 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+|+..++.
T Consensus 12 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 12 SQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 48999999999999999999999999 99999999999999987653
No 15
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=2.5e-17 Score=98.33 Aligned_cols=41 Identities=41% Similarity=0.689 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRK 41 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr 41 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+||
T Consensus 10 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 10 AQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 48999999999999999999999999 999999999999997
No 16
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.69 E-value=2e-17 Score=99.80 Aligned_cols=41 Identities=39% Similarity=0.699 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRK 41 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr 41 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+||
T Consensus 13 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 13 EQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 48999999999999999999999999 999999999999986
No 17
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=8.7e-18 Score=104.10 Aligned_cols=43 Identities=37% Similarity=0.618 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+||.+
T Consensus 14 ~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 14 TQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 48999999999999999999999999 99999999999999853
No 18
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=1.1e-17 Score=104.37 Aligned_cols=41 Identities=32% Similarity=0.533 Sum_probs=39.3
Q ss_pred ChHHHHHHHH-HhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHH
Q psy3396 1 EQLAELEAAF-AKSHYPDIYCREELAI-------LFQVWFQNRRAKYRK 41 (128)
Q Consensus 1 ~Ql~~Le~~F-~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr 41 (128)
+|+.+||..| +.++||+..+|++||. +|+|||||||+|+|+
T Consensus 18 ~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 18 EPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 5899999999 9999999999999999 999999999999986
No 19
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.68 E-value=9.3e-18 Score=103.49 Aligned_cols=44 Identities=41% Similarity=0.605 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+|+..+
T Consensus 12 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 12 YQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp HHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 48999999999999999999999999 999999999999999654
No 20
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=3.7e-17 Score=101.73 Aligned_cols=43 Identities=35% Similarity=0.501 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHh-cCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAK-SHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~-~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|+. ++||+..+|++||. +|+|||||||+|+|+..
T Consensus 11 ~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 11 DQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp HHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 489999999996 99999999999999 99999999999999965
No 21
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=9.9e-18 Score=105.25 Aligned_cols=44 Identities=34% Similarity=0.483 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
+||.+||..|..++||+..+|++||. +|+|||||||+|+|+..+
T Consensus 17 ~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 17 EQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 48999999999999999999999999 999999999999998543
No 22
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=3.9e-17 Score=101.93 Aligned_cols=44 Identities=34% Similarity=0.481 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHh-cCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAK-SHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~-~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
+|+.+||..|+. ++||+..+|++||. +|+|||||||+|+|+.++
T Consensus 12 ~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 12 DQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp HHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 489999999995 99999999999999 999999999999999764
No 23
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4e-17 Score=101.00 Aligned_cols=43 Identities=51% Similarity=0.889 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+|+..
T Consensus 17 ~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 17 EQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 48999999999999999999999999 99999999999999853
No 24
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.68 E-value=3.3e-17 Score=98.51 Aligned_cols=42 Identities=48% Similarity=0.684 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQ 42 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~ 42 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+|++
T Consensus 11 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 11 DQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 48999999999999999999999999 9999999999999984
No 25
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.68 E-value=9.8e-18 Score=101.48 Aligned_cols=42 Identities=33% Similarity=0.576 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQ 42 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~ 42 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+|+.
T Consensus 13 ~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 13 AQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 48999999999999999999999999 9999999999999874
No 26
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=4.7e-17 Score=100.75 Aligned_cols=43 Identities=42% Similarity=0.645 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+|+..
T Consensus 17 ~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 17 DQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 48999999999999999999999999 99999999999999854
No 27
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2e-17 Score=104.92 Aligned_cols=43 Identities=40% Similarity=0.579 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+||..
T Consensus 27 ~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 27 LQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 48999999999999999999999999 99999999999999843
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.67 E-value=2.4e-17 Score=101.54 Aligned_cols=44 Identities=41% Similarity=0.620 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+|+..+
T Consensus 12 ~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 12 AQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 48999999999999999999999999 999999999999998654
No 29
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-17 Score=101.91 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRK 41 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr 41 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|.++
T Consensus 13 ~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 13 NLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 48999999999999999999999999 999999999998664
No 30
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.67 E-value=4.5e-17 Score=106.22 Aligned_cols=45 Identities=44% Similarity=0.651 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+|+....
T Consensus 27 ~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 27 IQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 48999999999999999999999999 9999999999999997654
No 31
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.67 E-value=8.4e-17 Score=102.24 Aligned_cols=45 Identities=64% Similarity=1.023 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+|++.+.
T Consensus 28 ~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~~ 79 (81)
T 1fjl_A 28 SQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTS 79 (81)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhccc
Confidence 48999999999999999999999999 9999999999999997754
No 32
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.67 E-value=2.8e-17 Score=104.55 Aligned_cols=43 Identities=42% Similarity=0.603 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+||..
T Consensus 30 ~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 30 YQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 48999999999999999999999999 99999999999999854
No 33
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=2.3e-17 Score=102.13 Aligned_cols=43 Identities=35% Similarity=0.576 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+|+..
T Consensus 17 ~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 17 GQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 48999999999999999999999999 99999999999999843
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.66 E-value=2.1e-17 Score=106.60 Aligned_cols=42 Identities=40% Similarity=0.601 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQ 42 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~ 42 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+||.
T Consensus 38 ~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 38 YQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 48999999999999999999999999 9999999999999985
No 35
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.66 E-value=6.5e-17 Score=102.30 Aligned_cols=43 Identities=37% Similarity=0.505 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+||..
T Consensus 27 ~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 27 EQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp TTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 59999999999999999999999999 99999999999999843
No 36
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.66 E-value=8e-18 Score=107.55 Aligned_cols=44 Identities=32% Similarity=0.548 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+||.++
T Consensus 32 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 32 TQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999999 999999999999998543
No 37
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=5.7e-17 Score=106.36 Aligned_cols=45 Identities=42% Similarity=0.662 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+|+..+.
T Consensus 44 ~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 44 RQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 48999999999999999999999999 9999999999999997653
No 38
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.66 E-value=4.5e-17 Score=100.73 Aligned_cols=43 Identities=40% Similarity=0.515 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+|+..
T Consensus 17 ~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 17 YQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 48999999999999999999999999 99999999999999843
No 39
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.65 E-value=6e-17 Score=101.12 Aligned_cols=43 Identities=35% Similarity=0.532 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+|+..
T Consensus 17 ~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 17 VQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 48999999999999999999999999 99999999999999854
No 40
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=2.5e-17 Score=102.87 Aligned_cols=44 Identities=30% Similarity=0.477 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+|+.+.
T Consensus 16 ~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 16 EQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 48999999999999999999999998 999999999999998543
No 41
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.65 E-value=1.6e-17 Score=102.32 Aligned_cols=45 Identities=53% Similarity=0.976 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+|+.++.
T Consensus 13 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 13 QQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp HHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 48999999999999999999999999 9999999999999997654
No 42
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-17 Score=104.88 Aligned_cols=44 Identities=30% Similarity=0.554 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
+||.+||..|+.++||+..+|++||. +|+|||||||+|+|+..+
T Consensus 18 ~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 18 EQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp HHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 48999999999999999999999999 999999999999998543
No 43
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.65 E-value=5.7e-17 Score=100.26 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+|+..
T Consensus 17 ~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 17 DQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp HHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 48999999999999999999999999 99999999999999854
No 44
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.64 E-value=9e-17 Score=95.60 Aligned_cols=40 Identities=40% Similarity=0.634 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYR 40 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~k 40 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+|
T Consensus 12 ~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 12 AQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 48999999999999999999999998 99999999999975
No 45
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.9e-17 Score=101.12 Aligned_cols=42 Identities=43% Similarity=0.683 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQ 42 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~ 42 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+||.
T Consensus 17 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 17 FQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 48999999999999999999999999 9999999999999874
No 46
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.63 E-value=3e-17 Score=104.37 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHh----cCCCCHHHHHHHHH-------HHHHhhhchHHHHHH
Q psy3396 1 EQLAELEAAFAK----SHYPDIYCREELAI-------LFQVWFQNRRAKYRK 41 (128)
Q Consensus 1 ~Ql~~Le~~F~~----~~y~~~~~r~~La~-------qVkiWFQNRRak~kr 41 (128)
+|+.+||..|+. ++||+..+|++||. +|||||||||+|+|+
T Consensus 27 ~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 27 EQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp HHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred HHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 489999999999 99999999999999 999999999999874
No 47
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.63 E-value=9.3e-17 Score=98.27 Aligned_cols=42 Identities=38% Similarity=0.704 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQ 42 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~ 42 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+|+.
T Consensus 13 ~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 13 KQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 48999999999999999999999999 9999999999999874
No 48
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=97.19 Aligned_cols=44 Identities=43% Similarity=0.730 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+|+..+
T Consensus 11 ~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 11 NQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 48999999999999999999999999 999999999999998543
No 49
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9.9e-17 Score=101.66 Aligned_cols=42 Identities=29% Similarity=0.375 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHhc----CCCCHHHHHHHHH-------HHHHhhhchHHHHHHH
Q psy3396 1 EQLAELEAAFAKS----HYPDIYCREELAI-------LFQVWFQNRRAKYRKQ 42 (128)
Q Consensus 1 ~Ql~~Le~~F~~~----~y~~~~~r~~La~-------qVkiWFQNRRak~kr~ 42 (128)
+|+.+||..|+.+ +||+..+|++||. +|+|||||||+|+|+.
T Consensus 18 ~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 18 RDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp HHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 4899999999999 9999999999999 9999999999999984
No 50
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.62 E-value=2e-16 Score=98.79 Aligned_cols=44 Identities=66% Similarity=1.130 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+|+.++
T Consensus 19 ~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 19 YQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 48999999999999999999999998 999999999999998543
No 51
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.62 E-value=3.1e-16 Score=94.15 Aligned_cols=41 Identities=37% Similarity=0.476 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHh---cCCCCHHHHHHHHH-------HHHHhhhchHHHHHH
Q psy3396 1 EQLAELEAAFAK---SHYPDIYCREELAI-------LFQVWFQNRRAKYRK 41 (128)
Q Consensus 1 ~Ql~~Le~~F~~---~~y~~~~~r~~La~-------qVkiWFQNRRak~kr 41 (128)
+|+.+||..|.. ++||+..+|++||. +|+|||||||+|+|+
T Consensus 8 ~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 8 ENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp HHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 489999999999 99999999999999 999999999999986
No 52
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.61 E-value=3e-16 Score=94.48 Aligned_cols=40 Identities=30% Similarity=0.465 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYR 40 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~k 40 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+|
T Consensus 15 ~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 15 QARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 48999999999999999999999999 99999999999975
No 53
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.61 E-value=3.7e-16 Score=102.29 Aligned_cols=42 Identities=29% Similarity=0.512 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQ 42 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~ 42 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+|+.
T Consensus 35 ~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 35 EQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 48999999999999999999999998 9999999999999984
No 54
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=1.2e-15 Score=99.69 Aligned_cols=45 Identities=38% Similarity=0.607 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH----------------------HHHHhhhchHHHHHHHHHh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI----------------------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~----------------------qVkiWFQNRRak~kr~~~~ 45 (128)
+||.+||..|+.++||+..+|++||. +|+|||||||+|+|+..+.
T Consensus 17 ~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 17 ECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 48999999999999999999999977 5899999999999997764
No 55
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.59 E-value=9.1e-17 Score=102.16 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHh-----cCCCCHHHHHHHHH-------HHHHhhhchHHHHHH
Q psy3396 1 EQLAELEAAFAK-----SHYPDIYCREELAI-------LFQVWFQNRRAKYRK 41 (128)
Q Consensus 1 ~Ql~~Le~~F~~-----~~y~~~~~r~~La~-------qVkiWFQNRRak~kr 41 (128)
+|+.+|| .|.. ++||+..+|++||. +|||||||||+|+|+
T Consensus 27 ~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 27 EQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp HHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred HHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 4899999 8999 99999999999999 999999999999874
No 56
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.1e-15 Score=98.29 Aligned_cols=48 Identities=25% Similarity=0.290 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH----------------------------HHHHhhhchHHHHHHHHHhhhh
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI----------------------------LFQVWFQNRRAKYRKQEKQLQK 48 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~----------------------------qVkiWFQNRRak~kr~~~~~~~ 48 (128)
+|+.+||+.|+.++|||..+|++||. +|+|||||||+|+|+..+....
T Consensus 16 ~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr~~~~~~~ 91 (102)
T 2da6_A 16 ASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAFRQKLAMD 91 (102)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHHhhHhhhc
Confidence 48999999999999999999999976 4699999999999997765443
No 57
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.58 E-value=6.3e-16 Score=99.26 Aligned_cols=46 Identities=30% Similarity=0.544 Sum_probs=42.0
Q ss_pred ChHHHHHHHH---HhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHhh
Q psy3396 1 EQLAELEAAF---AKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQL 46 (128)
Q Consensus 1 ~Ql~~Le~~F---~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~~ 46 (128)
+|+.+||..| ..++||+..+|++||. +|+|||||||+|+|+.....
T Consensus 11 ~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 11 QATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 4899999999 8999999999999999 99999999999999966543
No 58
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.58 E-value=9.6e-16 Score=95.46 Aligned_cols=44 Identities=32% Similarity=0.542 Sum_probs=40.8
Q ss_pred ChHHHHHHHH---HhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAF---AKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F---~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
+|+.+||..| ..++||+..+|++||. +|+|||||||+|+|+...
T Consensus 11 ~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 11 QATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp HHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 4899999999 9999999999999999 999999999999998544
No 59
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=2.6e-15 Score=93.46 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHh---cCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAK---SHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~---~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|.. ++||+..+|++||. ||+|||||||+|+|+..
T Consensus 17 ~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 17 HATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp HHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 489999999987 99999999999999 99999999999999853
No 60
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.56 E-value=7.6e-16 Score=93.57 Aligned_cols=41 Identities=34% Similarity=0.607 Sum_probs=38.9
Q ss_pred ChHHHHHHHH---HhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHH
Q psy3396 1 EQLAELEAAF---AKSHYPDIYCREELAI-------LFQVWFQNRRAKYRK 41 (128)
Q Consensus 1 ~Ql~~Le~~F---~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr 41 (128)
+|+.+||..| ..++||+..+|++||. ||+|||||||+|+||
T Consensus 13 ~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 13 QATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp THHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 5899999999 9999999999999999 999999999999875
No 61
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.56 E-value=2.2e-15 Score=96.15 Aligned_cols=43 Identities=35% Similarity=0.427 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHh---cCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAK---SHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~---~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|.. ++||+..+|++||. ||+|||||||+|+|+..
T Consensus 12 ~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 12 ENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp HHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 489999999999 99999999999999 99999999999999853
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.54 E-value=5.1e-15 Score=95.14 Aligned_cols=40 Identities=38% Similarity=0.487 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHh---cCCCCHHHHHHHHH-------HHHHhhhchHHHHH
Q psy3396 1 EQLAELEAAFAK---SHYPDIYCREELAI-------LFQVWFQNRRAKYR 40 (128)
Q Consensus 1 ~Ql~~Le~~F~~---~~y~~~~~r~~La~-------qVkiWFQNRRak~k 40 (128)
+|+.+||..|.. ++||+..+|++||. ||+|||||||+|+|
T Consensus 37 ~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 37 ENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp HHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 489999999999 99999999999999 99999999999987
No 63
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.53 E-value=3.2e-15 Score=106.11 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQ 42 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~ 42 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+||.
T Consensus 111 ~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 111 NIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 48999999999999999999999999 9999999999999973
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.53 E-value=3.2e-15 Score=106.61 Aligned_cols=44 Identities=32% Similarity=0.411 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+||..+
T Consensus 109 ~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 109 GVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 48999999999999999999999999 999999999999998543
No 65
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.53 E-value=9e-15 Score=93.36 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHh---cCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAK---SHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~---~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~ 44 (128)
+|+.+||..|.. ++||+..+|++||. ||+|||||||+|+|+...
T Consensus 17 ~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 17 ESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp HHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 488999999988 59999999999999 999999999999998544
No 66
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.52 E-value=3.8e-15 Score=104.36 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQ 42 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~ 42 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+||.
T Consensus 97 ~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 97 AAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 48999999999999999999999999 9999999999999873
No 67
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=1.2e-14 Score=89.30 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=40.0
Q ss_pred ChHHHHHHHHH---hcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFA---KSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~---~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|. .++||+..+|++||. ||+|||||||+|+|+..
T Consensus 8 ~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 8 VATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp HHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHH
Confidence 47899999999 999999999999998 99999999999999743
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.48 E-value=8.2e-15 Score=103.53 Aligned_cols=42 Identities=33% Similarity=0.492 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQ 42 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~ 42 (128)
+|+.+||..|..++||+..+|++||. +|+|||||||+|+||.
T Consensus 106 ~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 106 RVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp HHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 48999999999999999999999998 9999999999999973
No 69
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=3.6e-14 Score=86.94 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHh-cCCCCHHHHHHHHH-------HHHHhhhchHHHH
Q psy3396 1 EQLAELEAAFAK-SHYPDIYCREELAI-------LFQVWFQNRRAKY 39 (128)
Q Consensus 1 ~Ql~~Le~~F~~-~~y~~~~~r~~La~-------qVkiWFQNRRak~ 39 (128)
+||..||..|+. ++|||...|++||+ +|+|||||||.-.
T Consensus 17 eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 17 EALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp HHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 599999999999 99999999999999 9999999999754
No 70
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.6e-14 Score=86.88 Aligned_cols=38 Identities=21% Similarity=0.451 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAK 38 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak 38 (128)
+|+..||..|..+++|+..++.+||. +|||||||||++
T Consensus 15 ~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 15 DHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 48999999999999999999999999 999999999984
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.43 E-value=2.8e-14 Score=101.40 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQE 43 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~ 43 (128)
+|+.+||..|+.++||+..+|++||. +|+|||||||+|+|+..
T Consensus 107 ~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 107 VQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 48999999999999999999999999 99999999999988743
No 72
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.43 E-value=1.9e-14 Score=94.79 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH----------------------------HHHHhhhchHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAI----------------------------LFQVWFQNRRAKYRKQEK 44 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~----------------------------qVkiWFQNRRak~kr~~~ 44 (128)
+||.+||..|+.++||+..+|++||. +|+|||||||+|+|+..+
T Consensus 19 ~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k~~ 90 (99)
T 1lfb_A 19 ASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRHK 90 (99)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCCC-
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHhch
Confidence 48999999999999999999999865 589999999998876443
No 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.35 E-value=3.1e-12 Score=82.48 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHh---cCCCCHHHHHHHHH-------HHHHhhhchHHHHHHHHHh
Q psy3396 1 EQLAELEAAFAK---SHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45 (128)
Q Consensus 1 ~Ql~~Le~~F~~---~~y~~~~~r~~La~-------qVkiWFQNRRak~kr~~~~ 45 (128)
+++.+|+.-|.. +.||+..+|++||. ||++||||||.|+|+....
T Consensus 15 ~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 15 ESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp HHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 367899999988 99999999999999 9999999999999986554
No 74
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=99.18 E-value=2.7e-12 Score=69.80 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=18.3
Q ss_pred HHHHhhhchHHHHHHHHHhhh
Q psy3396 27 LFQVWFQNRRAKYRKQEKQLQ 47 (128)
Q Consensus 27 qVkiWFQNRRak~kr~~~~~~ 47 (128)
||+|||||||+||||.+....
T Consensus 2 QVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 2 QIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CTTTTTTCSHHHHTSSHHHHT
T ss_pred CceeccHHHHHHHHHHhHHHH
Confidence 699999999999999877643
No 75
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=96.36 E-value=0.0024 Score=44.08 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAILF 28 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~qV 28 (128)
+|+.+||..|..++||+..+|++||..+
T Consensus 103 ~q~~~Le~~F~~~~yp~~~~r~~LA~~l 130 (151)
T 3d1n_I 103 QAIEALNAYFEKNPLPTGQEITEMAKEL 130 (151)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4899999999999999999999999844
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=96.25 E-value=0.0029 Score=46.69 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAILF 28 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~qV 28 (128)
+|+.+||+.|..++||+..+|++||..+
T Consensus 152 ~ql~~Le~~F~~~~YP~~~~ReeLA~~~ 179 (221)
T 2h8r_A 152 ASQQILYQAYDRQKNPSKEEREALVEEC 179 (221)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999999843
No 77
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=95.77 E-value=0.0031 Score=45.61 Aligned_cols=28 Identities=21% Similarity=0.139 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAILF 28 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~qV 28 (128)
.|+.+||+.|..++||+..+|++||..+
T Consensus 125 ~ql~~Le~~F~~~~yp~~~~Re~la~~~ 152 (194)
T 1ic8_A 125 ASQQILFQAYERQKNPSKEERETLVEEC 152 (194)
T ss_dssp HHHHHHHHHHHHHCCCCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 3899999999999999999999999843
No 78
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=95.25 E-value=0.012 Score=45.57 Aligned_cols=29 Identities=24% Similarity=0.173 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3396 1 EQLAELEAAFAKSHYPDIYCREELAILFQ 29 (128)
Q Consensus 1 ~Ql~~Le~~F~~~~y~~~~~r~~La~qVk 29 (128)
+|+.+||+.|+.++||+..+|++||.++.
T Consensus 375 ~q~~~Le~~f~~~~yp~~~~~~~la~~~~ 403 (421)
T 1mh3_A 375 QARAFLEQVFRRKQSLNSKEKEEVAKKCG 403 (421)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhcCCCcCHHHHHHHHHHHC
Confidence 47899999999999999999999998554
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.31 E-value=0.088 Score=31.89 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHH-------HHHHhhh
Q psy3396 4 AELEAAFAKSHYPDIYCREELAI-------LFQVWFQ 33 (128)
Q Consensus 4 ~~Le~~F~~~~y~~~~~r~~La~-------qVkiWFQ 33 (128)
+.|++.|...+.+....-..|+. +||-||-
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 67999999999999999999987 9999994
No 80
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=42.77 E-value=17 Score=17.44 Aligned_cols=16 Identities=25% Similarity=0.640 Sum_probs=12.0
Q ss_pred hchHHHHHHHHHhhhh
Q psy3396 33 QNRRAKYRKQEKQLQK 48 (128)
Q Consensus 33 QNRRak~kr~~~~~~~ 48 (128)
.|||-+|+..+.+...
T Consensus 7 RnRRRRWR~Rq~qi~~ 22 (26)
T 1etf_B 7 RNRRRRWRERQRAAAA 22 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4889999887776543
No 81
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=32.29 E-value=12 Score=23.69 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=8.9
Q ss_pred HHHHhhhchHH
Q psy3396 27 LFQVWFQNRRA 37 (128)
Q Consensus 27 qVkiWFQNRRa 37 (128)
-||||.||--.
T Consensus 53 dvkvwmqnled 63 (127)
T 2jpf_A 53 DVKVWMQNLED 63 (127)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 79999999543
No 82
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=31.33 E-value=26 Score=22.89 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=20.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHhhh
Q psy3396 7 EAAFAKSHYPDIYCREELAILFQVWFQNRRAKYRKQEKQLQ 47 (128)
Q Consensus 7 e~~F~~~~y~~~~~r~~La~qVkiWFQNRRak~kr~~~~~~ 47 (128)
+-.|+.|.||...=-.. |+ .|||-+||..+++..
T Consensus 19 kiLyQSNPyP~peGTRq-aR------RNRRRRWR~RQrQI~ 52 (115)
T 2x7l_M 19 KFLYQSNPPPNPEGTRQ-AR------RNRRRRWRERQRQIH 52 (115)
T ss_dssp HHHHHSSCCCCCCCCTT-TH------HHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCCCCCchh-hh------HhHHHHHHHHHHHHH
Confidence 34467777775431100 11 499999999887653
No 83
>3i5q_B Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 2.20A {Saccharomyces cerevisiae}
Probab=25.91 E-value=1.2e+02 Score=22.34 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhch
Q psy3396 3 LAELEAAFAKSHYPDIYCREELAILFQVWFQNR 35 (128)
Q Consensus 3 l~~Le~~F~~~~y~~~~~r~~La~qVkiWFQNR 35 (128)
+.+|+..|..+..-...-..+++--|+.||++=
T Consensus 177 ~~vl~~L~~~~g~~~~~~~~ei~~li~~W~~~~ 209 (252)
T 3i5q_B 177 YYILKELIETSDSDNSVFNKEMTWLIHEWYKSD 209 (252)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 467888888754444444455555899999873
No 84
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=25.69 E-value=39 Score=20.16 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=21.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHhhh
Q psy3396 6 LEAAFAKSHYPDIYCREELAILFQVWFQNRRAKYRKQEKQLQ 47 (128)
Q Consensus 6 Le~~F~~~~y~~~~~r~~La~qVkiWFQNRRak~kr~~~~~~ 47 (128)
.+-.|+.+.||+..--.. |. .|||-+||..+++..
T Consensus 21 IkiLyQSNP~P~p~GTrq-aR------RNRRRRWR~RQrQI~ 55 (72)
T 3lph_A 21 IKFLYQSNPPPNPEGTRQ-AR------RNRRRRWRERQRQIH 55 (72)
T ss_dssp HHHHHHTCCCCCCCSCHH-HH------HHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCCCCCchH-HH------HHHHHHHHHHHHHHH
Confidence 344577888886431111 11 499999998877654
Done!