RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3396
(128 letters)
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 87.1 bits (216), Expect = 6e-24
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPS 53
EQ+ LE F ++HYPD++ RE LA QVWF NRRAK+R++EK +
Sbjct: 17 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQSG 76
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 85.9 bits (213), Expect = 1e-23
Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 7/53 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQL 46
QL ELE AF ++ YPDIY REELA QVWFQNRRA+ RKQ +
Sbjct: 28 SQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTSV 80
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain
variant, DNA binding protein, developmental protein,
disease mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 85.1 bits (211), Expect = 2e-23
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKAL 50
Q+ LE F + YP I E+LA Q+WFQNRRAK ++ ++ Q +
Sbjct: 11 NQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRESQFLM 67
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 84.2 bits (209), Expect = 3e-23
Identities = 31/51 (60%), Positives = 38/51 (74%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
QL ELE AF+++HYPD++ REELA+ QVWFQNRRAK+RKQEK
Sbjct: 9 FQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Mus musculus}
Length = 80
Score = 84.8 bits (210), Expect = 4e-23
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQKALTPS 53
QL LEA FAK+ YPDI+ REE+A+ QVWF+NRRAK R+Q++Q Q
Sbjct: 17 AQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQSG 76
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 84.3 bits (209), Expect = 5e-23
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 7/55 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
+QL +LEA F ++ YPD+ REE+A+ +VWF+NRRAK+RK+E+ +
Sbjct: 13 QQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFIVT 67
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 83.5 bits (207), Expect = 1e-22
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQ 45
EQL LE F ++ YPD+ RE+LA +VWF+NRRAK+R+
Sbjct: 17 EQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPS 68
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 81.3 bits (201), Expect = 8e-22
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKALTPS 53
QL +++ FA +H PD ++LA QVWFQN RAK+R+ + +
Sbjct: 17 HQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVSG 76
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding
protein, homeodomain, LIM domain; NMR {Rattus
norvegicus} SCOP: a.4.1.1
Length = 66
Score = 79.3 bits (196), Expect = 4e-21
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQ 47
+QL L +A + PD +E+L + +VWFQN+R K +K+ ++
Sbjct: 13 KQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIMMK 66
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 78.6 bits (194), Expect = 9e-21
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQ 45
QL L+ F + YP E+L+ L VWFQN R K RK
Sbjct: 17 YQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 80
Score = 74.4 bits (183), Expect = 4e-19
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQ 45
EQL L + P + +A QVWFQN RA+ RK
Sbjct: 27 EQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPS 78
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 73.2 bits (180), Expect = 1e-18
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 1 EQLAELEAAFAKSH-YPDIYCREELAILF-------QVWFQNRRAKYRKQEKQ 45
+Q+ LE F K + +PD +A Q WF+ R A++R+ E
Sbjct: 11 DQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 63
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 72.4 bits (178), Expect = 3e-18
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQ 45
+QL L F ++ P +E+A + WF+N K R+
Sbjct: 17 DQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 69.8 bits (171), Expect = 3e-17
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 1 EQLAELEAAFAKSH-YPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
+Q+ LE F K + +PD +A Q WF+ R A++R+ E
Sbjct: 12 DQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 69.0 bits (169), Expect = 5e-17
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQ 45
EQL+ L+ +F ++ +P E L + + WF +RR R +
Sbjct: 18 EQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription
factor, structural genomics, loop insertion, NPPSFA;
NMR {Homo sapiens} SCOP: a.4.1.1
Length = 95
Score = 62.0 bits (150), Expect = 5e-14
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 22/75 (29%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF----------------------QVWFQNRRAK 38
E LA +E+ F ++ YPD REE+A WF NRR +
Sbjct: 17 ECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKE 76
Query: 39 YRKQEKQLQKALTPS 53
+++ +
Sbjct: 77 IKRRANIAAILESSG 91
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 59.2 bits (143), Expect = 5e-13
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQKAL 50
Q+ LE +F KS +P + L + WF RR E+ + ++
Sbjct: 23 GQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVLDSM 79
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 56.7 bits (137), Expect = 2e-12
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQL 46
EQ+A L+A+F +S +PD L + + WF + R + ++ +
Sbjct: 14 EQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGIVHI 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 56.9 bits (137), Expect = 2e-11
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
LE+ F K P + LA +VWF NRR K ++
Sbjct: 109 GVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 54.9 bits (132), Expect = 2e-11
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQ 45
EQL LE++FA++ P + L WF RR K +E +
Sbjct: 17 EQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 54.6 bits (131), Expect = 1e-10
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRK 41
+ + L A F K+ P E+A +VWF NRR +
Sbjct: 103 QAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 53.1 bits (127), Expect = 1e-10
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQ 47
EQL L+A+F S L WF ++ +E++++
Sbjct: 21 EQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 74
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 52.7 bits (126), Expect = 7e-10
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRK 41
LE F + P +A +VWF NRR + ++
Sbjct: 97 AAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 52.4 bits (125), Expect = 1e-09
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRK 41
LE F KS P + +A +VWF NRR K ++
Sbjct: 106 RVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 51.9 bits (124), Expect = 2e-09
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRK 41
LE +F ++ P +A +VWF NRR K ++
Sbjct: 111 NIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 49.0 bits (117), Expect = 3e-09
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 1 EQLAELEAAFAK-SHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQ 45
E L L++ YPD L+ +FQN+R +
Sbjct: 17 EALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGPS 69
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1f43_A 1yrn_A*
Length = 61
Score = 46.8 bits (112), Expect = 1e-08
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYR 40
+ A LE F + + +EE+A +VWF N+R + +
Sbjct: 15 QARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>1lfb_A Liver transcription factor (LFB1); transcription regulation;
2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 47.5 bits (112), Expect = 2e-08
Identities = 12/79 (15%), Positives = 17/79 (21%), Gaps = 28/79 (35%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA----------------------------ILFQVWF 32
L A+ + P RE L + WF
Sbjct: 19 ASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWF 78
Query: 33 QNRRAKYRKQEKQLQKALT 51
NRR + + K
Sbjct: 79 ANRRKEEAFRHKLAMDTYK 97
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 46.7 bits (111), Expect = 3e-08
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-----QV--WFQNRRAKYRKQEKQLQKALTP 52
Q ELE F + Y RE LA L QV WFQN R K ++ + + P
Sbjct: 19 AQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHP 77
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 45.4 bits (108), Expect = 6e-08
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILFQ-------VWFQNRRAKYRKQ 42
Q+ ELE F + Y R LA + WFQNRR K+R+Q
Sbjct: 7 SQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 69
Score = 45.4 bits (108), Expect = 6e-08
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-----QV--WFQNRRAKYRKQEKQ 45
Q+ ELE F+ Y R LA QV WFQNRR K ++++
Sbjct: 14 TQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 45.5 bits (108), Expect = 8e-08
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-----QV--WFQNRRAKYRKQEKQ 45
QLA L+ F K+ Y + R ELA QV WFQN+R+K +K
Sbjct: 17 FQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPS 68
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 45.0 bits (107), Expect = 1e-07
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-----QV--WFQNRRAKYRKQEKQ 45
Q+ ELE F + Y RE LA + QV WFQN R K ++Q K
Sbjct: 12 AQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for
eukaryotic structural genomics; NMR {Homo sapiens}
Length = 84
Score = 45.2 bits (107), Expect = 1e-07
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-----QV--WFQNRRAKYRKQEKQ 45
QL L F + Y + +EL+ + QV WFQN+R K ++ +K
Sbjct: 32 TQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 83
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 44.8 bits (106), Expect = 1e-07
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-----QV--WFQNRRAKYRKQEKQ 45
QL LE F K Y R +LA QV W+QNRR K++K
Sbjct: 27 LQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPS 78
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein,
transcription regulation, NUC homeobox; 2.6A {Mus
musculus}
Length = 62
Score = 43.8 bits (104), Expect = 2e-07
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-----QV--WFQNRRAKYRKQE 43
QL L+ F K Y + +EL+ + QV WFQN+R K ++ +
Sbjct: 13 AQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 44.9 bits (106), Expect = 2e-07
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-----QV--WFQNRRAKYRKQEKQLQKALTPS 53
Q+AELE F K Y R LA QV WFQNRR K+R+Q + ++A +
Sbjct: 27 IQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQA 86
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 43.4 bits (103), Expect = 3e-07
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-----QV--WFQNRRAKYRK 41
QL LE F + Y I R E + QV WFQNRRAK ++
Sbjct: 10 AQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 46.2 bits (108), Expect = 3e-07
Identities = 12/70 (17%), Positives = 15/70 (21%), Gaps = 30/70 (42%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF----------------------------QVWF 32
L A+ + P RE L WF
Sbjct: 152 ASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWF 211
Query: 33 QNRR--AKYR 40
NRR +R
Sbjct: 212 ANRRKEEAFR 221
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 45.6 bits (107), Expect = 4e-07
Identities = 11/66 (16%), Positives = 15/66 (22%), Gaps = 28/66 (42%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELA----------------------------ILFQVWF 32
L A+ + P RE L + WF
Sbjct: 125 ASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWF 184
Query: 33 QNRRAK 38
NRR +
Sbjct: 185 ANRRKE 190
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 42.8 bits (101), Expect = 8e-07
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILFQ-------VWFQNRRAKYRKQEKQ 45
+Q ELE F Y R+ LA + Q WFQNRRAK+R+
Sbjct: 17 DQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 41.8 bits (99), Expect = 1e-06
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILF-----QV--WFQNRRAKYR 40
Q+ ELE F + Y R++LA + QV WFQNRR K +
Sbjct: 12 AQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 42.2 bits (98), Expect = 6e-06
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQ 45
Q L A F ++ P + ++ +F N R + + +
Sbjct: 108 QRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double
helix, helix-turn-helix; NMR {Drosophila melanogaster}
SCOP: a.4.1.1
Length = 68
Score = 40.1 bits (94), Expect = 7e-06
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILFQ-------VWFQNRRAKYRKQEKQ 45
Q+AELE F + Y +L+ +WF+NRR +++ Q Q
Sbjct: 12 SQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 38.5 bits (90), Expect = 3e-05
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILFQ-------VWFQNRRAKYRKQE 43
+QL LE F K +Y R ELA VWFQNRR K ++Q
Sbjct: 11 DQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQR 60
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 38.5 bits (90), Expect = 3e-05
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILFQ-------VWFQNRRAKYRK 41
EQLA L+ F ++ Y R++L+ +WF+N+RAK +K
Sbjct: 13 EQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 37.6 bits (87), Expect = 1e-04
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILFQ-------VWFQNRRAKYRKQEKQ 45
QL ELE F + Y R E+A + +WFQNRR K +K+E++
Sbjct: 45 QLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 37.5 bits (86), Expect = 2e-04
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRK 41
EQL L++AF ++ +P ++LA WF + R ++
Sbjct: 35 EQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKN 82
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 36.8 bits (85), Expect = 2e-04
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILFQ-------VWFQNRRAKYRKQEK 44
Q ELE F + Y R E+A +WFQNRR K++K+ K
Sbjct: 39 QTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEHK 88
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA;
NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 35.9 bits (83), Expect = 3e-04
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILFQ-------VWFQNRRAKYRKQEKQ 45
Q ELE F + Y R E+A +WFQNRR K++K+ K
Sbjct: 13 QTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 35.6 bits (82), Expect = 4e-04
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQ 45
QL ELE +A + + R +++ +WFQNRR K +K
Sbjct: 18 QLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPS 68
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens}
PDB: 2ld5_A*
Length = 73
Score = 35.6 bits (82), Expect = 4e-04
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILFQ-------VWFQNRRAKYRKQEKQLQ 47
QL ELE +A + + R ++ +WFQNRR K +K +L+
Sbjct: 18 QLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 70
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing
factor, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.4.1.1
Length = 76
Score = 35.4 bits (81), Expect = 5e-04
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRK 41
EQLA L++ F + + ++L + WF + R +
Sbjct: 13 EQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 35.6 bits (82), Expect = 6e-04
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILFQ-------VWFQNRRAKYRKQEK 44
Q ELE F +HY R E+A +WFQNRR K +K+ +
Sbjct: 31 QTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 35.2 bits (81), Expect = 6e-04
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 1 EQLAELEAAFAK-SHYPDIYCREELA-------ILFQVWFQNRRAKYRK 41
E LE F + YPD + L+ Q WF++RR + +
Sbjct: 18 EPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain;
protein-DNA complex, transcription/DNA complex; 2.42A
{Mesocricetus auratus}
Length = 63
Score = 34.7 bits (80), Expect = 8e-04
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILFQ-------VWFQNRRAKYRKQE 43
QL ELE F + Y R ELA++ +WFQNRR K++K+E
Sbjct: 14 QLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA
complex, HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 34.4 bits (79), Expect = 0.001
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 2 QLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
Q ELE F + Y R E+A L ++WFQNRR K +K K K
Sbjct: 24 QTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAK 77
>2e19_A Transcription factor 8; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 64
Score = 31.9 bits (72), Expect = 0.008
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
L+ L+A +A + P ++A + + WF+ +A +
Sbjct: 13 NLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQS 63
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 64
Score = 29.4 bits (66), Expect = 0.067
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 1 EQLAELEAAFAKSH-YPDIYCREELA-------ILFQVWFQNRRAKYRK 41
+ A LE F +PD E L+ Q WF+ RR + +
Sbjct: 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.089
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILFQVWFQNRRAKYRKQEKQLQKA 49
++L EL+AA +E + ++ ++Q +Q++K
Sbjct: 96 KRLQELDAASKVM-------EQEWREKAK---KDLEEWNQRQSEQVEKN 134
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer,
zinc, metalloenzyme, structural genomics, PSI, protein
structure initiative; 2.03A {Escherichia coli} SCOP:
c.97.1.2 PDB: 3ocq_A
Length = 168
Score = 29.8 bits (68), Expect = 0.17
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 14 HYPDIY---CREELAILFQVWFQNRRAKYRKQEKQLQKA 49
H +I +E A L +F+ RR + K +K+ Q +
Sbjct: 129 HRVEITEGILADECAALLSDFFRMRRQE-IKAQKKAQSS 166
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A
{Streptococcus pyogenes serotype M6}
Length = 179
Score = 29.1 bits (66), Expect = 0.24
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 14 HYPDIY---CREELAILFQVWFQNRRAKYRKQEKQLQKA 49
H + + A + Q +F+ R + +K K L K
Sbjct: 136 HRVQVERGLLAADCANIMQTFFRQGRER-KKIAKHLIKE 173
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.28
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILFQVWFQNR-RAKYRKQEKQLQK 48
E+L F ++ C + +L ++ A + + KQ+Q+
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLL-RIALMAEDEAIFEEAHKQVQR 589
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices
with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 27.1 bits (59), Expect = 0.64
Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEK 44
+ ++ L+A +A + P+ +++I + WF+ R+ +
Sbjct: 15 DHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQYSNSR 65
>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea
mays} SCOP: d.32.1.3 d.32.1.3
Length = 418
Score = 28.4 bits (62), Expect = 0.78
Identities = 15/131 (11%), Positives = 31/131 (23%), Gaps = 15/131 (11%)
Query: 8 AAFAKSHYP---DIYCREELAILFQVWFQNRRAKYRKQEKQLQKALTPSVIPTCNGAMMR 64
FA H + R A A+ L + + + ++R
Sbjct: 108 RRFAADHGLAVRAVALRVADAEDAFRASVAAGARPAFGPVDLGRGFRLAEVELYGDVVLR 167
Query: 65 NIYPTTSRGYQPY---------PHPNTINRQ---HFVILVPGMSTEDEWYNKSLSALRMN 112
+ +P+ P H V VP ++ ++
Sbjct: 168 YVSYPDGAAGEPFLPGFEGVASPGAADYGLSRFDHIVGNVPELAPAAAYFAGFTGFHEFA 227
Query: 113 SSHHSNLATPM 123
++ T
Sbjct: 228 EFTTEDVGTAE 238
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.1
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 4/20 (20%)
Query: 41 KQE-KQLQKAL---TPSVIP 56
KQ K+LQ +L P
Sbjct: 19 KQALKKLQASLKLYADDSAP 38
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 25.7 bits (55), Expect = 2.1
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 29 QVWFQNRRAKYRKQEKQ 45
+ W NRR KYR +
Sbjct: 57 RTWIGNRRRKYRLMGIE 73
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 26.7 bits (60), Expect = 2.4
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILFQVWF---QNRRAKYRKQEKQLQKAL 50
+ + L+ + K+ + L + R +K + AL
Sbjct: 251 DLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMDAL 303
>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type
dioxygenase, non-heme iron protein; HET: DHB; 2.20A
{Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B
Length = 302
Score = 26.7 bits (58), Expect = 2.7
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 5/83 (6%)
Query: 4 AELEAAFAKSHYPDIYCREELAILFQVWFQNRRAKYRKQEKQLQK-ALTPSVI----PTC 58
A + SH P + + ++ Y+ +++ P V+
Sbjct: 2 ARVTTGITSSHIPALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYNDH 61
Query: 59 NGAMMRNIYPTTSRGYQPYPHPN 81
A NI PT + G P
Sbjct: 62 ASAFDMNIIPTFAIGCAETFKPA 84
>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation,
oxidoreductase; HET: MTV; 2.60A {Pichia angusta}
Length = 474
Score = 26.0 bits (57), Expect = 3.8
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 74 YQPYPHPNTINRQHFVILVPGMSTEDEWYNKSLSALRMNSSHHSNLATPM 123
P P + +L + T+D + + LR+ SH N P+
Sbjct: 12 ITELPFPVRQDSPLTEVLPTDLKTKDNFVARDPDLLRLTGSHPFNSEPPL 61
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational
analysis, G protein, GAS subunit, A2A adenosine
receptor, cell-penetrating peptides; NMR {Synthetic}
PDB: 2o00_A
Length = 37
Score = 24.2 bits (52), Expect = 4.1
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 29 QVWFQNRRAKYRKQ 42
++WFQNRR K++K+
Sbjct: 4 KIWFQNRRMKWKKR 17
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA
processing, hydrolase, structural genomics, structural
consortium, SGC; 2.80A {Homo sapiens}
Length = 189
Score = 25.7 bits (57), Expect = 4.9
Identities = 3/44 (6%), Positives = 10/44 (22%), Gaps = 4/44 (9%)
Query: 7 EAAFAKSHYPDIY---CREELAILFQVWFQNRRAKYRKQEKQLQ 47
EE + + +++ + K +
Sbjct: 147 ADLPNTGRPFQCIPGYRAEEAVEMLKTFYKQENPN-APKSKVRK 189
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding
region, structural genomics, PSI, protein structure
initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Length = 197
Score = 25.1 bits (55), Expect = 6.2
Identities = 3/29 (10%), Positives = 7/29 (24%), Gaps = 3/29 (10%)
Query: 14 HYPDIY---CREELAILFQVWFQNRRAKY 39
+ R+ L + + Y
Sbjct: 159 RGITVTTGLLRDAACALLREYNACNGVIY 187
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 25.2 bits (56), Expect = 6.9
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 66 IYPTTSRGYQP--YPHPNTINRQHFVILVPGMSTEDEWYNK 104
+RG Y P + + + P + + + +
Sbjct: 100 AKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPERHWQQ 140
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 25.2 bits (56), Expect = 7.0
Identities = 7/53 (13%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 1 EQLAELEAAFAKSHYPDIYCREELAILFQVWF---QNRRAKYRKQEKQLQKAL 50
++ L+ + D+ ++ L + + RRA+Y + + + +
Sbjct: 272 ARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFV 324
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.130 0.397
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,004,516
Number of extensions: 102320
Number of successful extensions: 428
Number of sequences better than 10.0: 1
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 85
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)