RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3396
         (128 letters)



>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 68

 Score = 60.2 bits (146), Expect = 5e-14
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 7/55 (12%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
          EQ+  LE  F ++HYPD++ RE LA          QVWF NRRAK+R++EK   +
Sbjct: 11 EQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQ 65


>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 77

 Score = 59.8 bits (145), Expect = 7e-14
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 7/55 (12%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
           Q  ELE  F  + Y     R E+A L        ++WFQNRR K +K  K   K
Sbjct: 23 HQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAK 77


>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
          melanogaster [TaxId: 7227]}
          Length = 56

 Score = 57.5 bits (139), Expect = 4e-13
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 7/49 (14%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQ 42
           Q  ELE  F  + Y     R E+A          ++WFQNRR K++K+
Sbjct: 7  YQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55


>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 66

 Score = 56.0 bits (135), Expect = 2e-12
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQ 47
          +QL  L   +A +  PD   +E+L  +        +VWFQN+R K +K+   ++
Sbjct: 13 KQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIMMK 66


>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 65

 Score = 54.9 bits (132), Expect = 6e-12
 Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 7/53 (13%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQL 46
           QL ELE AF ++ YPDIY REELA          QVWFQNRRA+ RKQ   +
Sbjct: 12 SQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTSV 64


>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 58

 Score = 54.1 bits (130), Expect = 8e-12
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRK 41
           QL ELE  +A + +     R +++           +WFQNRR K +K
Sbjct: 11 GQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58


>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 57

 Score = 54.1 bits (130), Expect = 8e-12
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRK 41
          +Q  ELE  F    Y     R+ LA +        + WFQNRRAK+R+
Sbjct: 10 DQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57


>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 60

 Score = 53.0 bits (127), Expect = 2e-11
 Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 7/50 (14%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELA-------ILFQVWFQNRRAKYRKQE 43
          +QL +LEA F ++ YPD+  REE+A          +VWF+NRRAK+RK+E
Sbjct: 11 QQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 60


>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
          (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 53.5 bits (128), Expect = 3e-11
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 22/66 (33%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF----------------------QVWFQNRRAK 38
          E LA +E+ F ++ YPD   REE+A                           WF NRR +
Sbjct: 10 ECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKE 69

Query: 39 YRKQEK 44
           +++  
Sbjct: 70 IKRRAN 75


>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
          (Drosophila melanogaster) [TaxId: 7227]}
          Length = 57

 Score = 51.4 bits (123), Expect = 9e-11
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 7/49 (14%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQ 42
          +QL  LE  F K +Y     R ELA          +VWFQNRR K ++Q
Sbjct: 9  DQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57


>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 53

 Score = 51.0 bits (122), Expect = 1e-10
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 7/47 (14%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYR 40
          +  A LE  F +    +   +EE+A          +VWF N+R + +
Sbjct: 7  QARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53


>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
          LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 52

 Score = 50.9 bits (122), Expect = 1e-10
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 8/49 (16%)

Query: 1  EQLAELEAAFAK-SHYPDIYCREELAILF-------QVWFQNRRAKYRK 41
          +  A LE  F   + +PD    E L+          Q WF+ RR + + 
Sbjct: 3  QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51


>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 77

 Score = 51.2 bits (122), Expect = 2e-10
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAI-------LFQVWFQNRRAKYRKQEKQ 45
           Q  ELE  F +  Y     RE LA          ++WFQN R K ++ + +
Sbjct: 19 AQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70


>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
          (Drosophila melanogaster) [TaxId: 7227]}
          Length = 67

 Score = 51.1 bits (122), Expect = 2e-10
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQ 47
           Q+AELE  F +  Y       +L+          ++WF+NRR +++ Q  Q +
Sbjct: 11 SQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHK 64


>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 50.8 bits (121), Expect = 3e-10
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 7/52 (13%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQ 45
           QL ELE  F  + Y     R E+A          ++WFQNRR K +K+E++
Sbjct: 37 RQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 88


>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 58

 Score = 49.1 bits (117), Expect = 7e-10
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 7/50 (14%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQE 43
               LE  F +   P       +A          +VWF NRR + ++ +
Sbjct: 9  AAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 58


>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 58

 Score = 48.8 bits (116), Expect = 1e-09
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRK 41
           QL  LE  F +  Y  I  R E +          ++WFQNRRAK ++
Sbjct: 10 AQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57


>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 72

 Score = 49.2 bits (117), Expect = 1e-09
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 8/52 (15%)

Query: 1  EQLAELEAAFAKS-HYPDIYCREELAILF-------QVWFQNRRAKYRKQEK 44
          +Q+  LE  F K   +PD      +A          Q WF+ R A++R+ E 
Sbjct: 11 DQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62


>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 68

 Score = 48.4 bits (115), Expect = 2e-09
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQ 45
           Q+ ELE  F +  Y     RE LA +        ++WFQN R K ++Q K 
Sbjct: 12 AQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63


>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
          melanogaster [TaxId: 7227]}
          Length = 53

 Score = 47.5 bits (113), Expect = 3e-09
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAK 38
          EQLA L+  F ++ Y     R++L+          ++WFQN RAK
Sbjct: 9  EQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53


>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
          LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 59

 Score = 46.7 bits (111), Expect = 6e-09
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 8/48 (16%)

Query: 1  EQLAELEAAFAK-SHYPDIYCREELAILF-------QVWFQNRRAKYR 40
          E    LE  F   + YPD    + L+          Q WF++RR + +
Sbjct: 11 EPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58


>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
          ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 76

 Score = 46.3 bits (109), Expect = 1e-08
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 7/54 (12%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQ 47
          EQL  L+A+F  S          L             WF  ++     +E++++
Sbjct: 14 EQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 67


>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 67

 Score = 45.4 bits (107), Expect = 3e-08
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 7/49 (14%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRRAKYRKQ 42
               LE  F K   P +     +A          +VWF NRR K ++ 
Sbjct: 18 RVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66


>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 60

 Score = 45.2 bits (107), Expect = 3e-08
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 10/51 (19%)

Query: 1  EQLAELEAAFAK---SHYPDIYCREELAILF-------QVWFQNRRAKYRK 41
          E +  LE+ FAK   + Y D    E L           + W  NRR K + 
Sbjct: 8  ENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58


>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 50

 Score = 44.1 bits (104), Expect = 5e-08
 Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 7/43 (16%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF-------QVWFQNRR 36
           Q   L A F ++  P    +  ++            +F N R
Sbjct: 8  VQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50


>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
          {Rat (Rattus rattus) [TaxId: 10117]}
          Length = 78

 Score = 43.6 bits (102), Expect = 1e-07
 Identities = 12/72 (16%), Positives = 16/72 (22%), Gaps = 28/72 (38%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAILF----------------------------QVWF 32
               L  A+ +   P    RE L                                  WF
Sbjct: 7  ASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWF 66

Query: 33 QNRRAKYRKQEK 44
           NRR +   + K
Sbjct: 67 ANRRKEEAFRHK 78


>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 43.0 bits (101), Expect = 3e-07
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 1  EQLAELEAAFA---KSHYPDIYCREELAILF-------QVWFQNRRAKYRKQEKQLQK 48
          +    L   F     + YP    +EELA            WF N+R +Y+K   + Q+
Sbjct: 11 QATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQE 68


>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
          cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 80

 Score = 42.7 bits (100), Expect = 4e-07
 Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 11/53 (20%)

Query: 1  EQLAELEAAFAK----SHYPDIYCREELAIL-------FQVWFQNRRAKYRKQ 42
          EQ  ++ A   +        D    E+            ++W  N +      
Sbjct: 27 EQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79


>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 71

 Score = 41.6 bits (97), Expect = 8e-07
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 8/53 (15%)

Query: 1  EQLAELEAAFAK-SHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQ 45
          E L  L++       YPD      L+            +FQN+R   +     
Sbjct: 17 EALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGPS 69


>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 62

 Score = 40.1 bits (94), Expect = 2e-06
 Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 10/51 (19%)

Query: 1  EQLAELEAAFAKSH---YPDIYCREELAILF-------QVWFQNRRAKYRK 41
               + +   +     YP    ++++A            WF N R +  +
Sbjct: 12 HATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62


>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 57

 Score = 39.9 bits (93), Expect = 3e-06
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 7/49 (14%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQ 42
               LE +F ++  P       +A          +VWF NRR K ++ 
Sbjct: 8  NIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 56


>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 76

 Score = 39.7 bits (92), Expect = 5e-06
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 1  EQLAELEAAFAKSHYPDIYCREELAIL-------FQVWFQNRRAKYRKQEKQLQK 48
          EQLA L++ F +  +      ++L  +          WF + R   +  + +  +
Sbjct: 13 EQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFR 67


>d1sqda2 d.32.1.3 (A:181-410) 4-hydroxyphenylpyruvate dioxygenase,
           HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
           3702]}
          Length = 230

 Score = 29.7 bits (66), Expect = 0.084
 Identities = 6/58 (10%), Positives = 15/58 (25%), Gaps = 7/58 (12%)

Query: 73  GYQPYPHPNTINRQ-------HFVILVPGMSTEDEWYNKSLSALRMNSSHHSNLATPM 123
           G++     ++           H V  VP +     +        +       ++ T  
Sbjct: 4   GFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAE 61


>d1m07a_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Bullfrog
          (Rana catesbeiana) [TaxId: 8400]}
          Length = 111

 Score = 26.7 bits (59), Expect = 0.58
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 43 EKQLQKALTPSVIPTCNGAMMRNIYPTTSR 72
              QK +  + I  CN  M  NIY    +
Sbjct: 4  ATFQQKHIINTPIINCNTIMDNNIYIVGGQ 33


>d1sp8a2 d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxygenase,
           HppD {Corn (Zea mays) [TaxId: 4577]}
          Length = 224

 Score = 24.3 bits (52), Expect = 4.5
 Identities = 5/37 (13%), Positives = 11/37 (29%)

Query: 87  HFVILVPGMSTEDEWYNKSLSALRMNSSHHSNLATPM 123
           H V  VP ++    ++               ++ T  
Sbjct: 12  HIVGNVPELAPAAAYFAGFTGFHEFAEFTTEDVGTAE 48


>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase
           {Thermobifida fusca [TaxId: 2021]}
          Length = 298

 Score = 24.0 bits (51), Expect = 6.4
 Identities = 5/61 (8%), Positives = 14/61 (22%)

Query: 18  IYCREELAILFQVWFQNRRAKYRKQEKQLQKALTPSVIPTCNGAMMRNIYPTTSRGYQPY 77
                 +        +    K  +  + + +    ++ P           P   R +  Y
Sbjct: 214 TDHIAYMFKNGLTRSEAVLEKEDEWVEHVNEIADETLYPMTASWYTGANVPGKPRVFMLY 273

Query: 78  P 78
            
Sbjct: 274 V 274


>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 386

 Score = 23.5 bits (50), Expect = 9.6
 Identities = 5/48 (10%), Positives = 19/48 (39%)

Query: 1   EQLAELEAAFAKSHYPDIYCREELAILFQVWFQNRRAKYRKQEKQLQK 48
           ++L ++   +          ++ L  + Q      +A+ ++   ++ K
Sbjct: 330 DKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVK 377


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.130    0.397 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 488,346
Number of extensions: 20416
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 45
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)