BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy34
         (190 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MGB|A Chain A, Teg 12 Ternary Structure Complexed With Pap And The
           Teicoplanin Aglycone
 pdb|3MGB|B Chain B, Teg 12 Ternary Structure Complexed With Pap And The
           Teicoplanin Aglycone
 pdb|3MGC|A Chain A, Teg12 Apo
 pdb|3MGC|B Chain B, Teg12 Apo
          Length = 319

 Score = 29.6 bits (65), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 120 KKHTKVEFPEARIYEETLNIILYEARNPPDQELMQATSTRGAVAGMSSYTSDEEEERSGL 179
           K H K + P   +Y E    +LY  RNP D   M  +S R     M+S + D+ E+    
Sbjct: 99  KTHLKADVPVLGLYGEATAKVLYLVRNPRD---MLLSSMR-----MASISRDDVEKSRDF 150

Query: 180 AR 181
           AR
Sbjct: 151 AR 152


>pdb|3MG9|A Chain A, Teg 12 Binary Structure Complexed With The Teicoplanin
           Aglycone
          Length = 294

 Score = 29.6 bits (65), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 120 KKHTKVEFPEARIYEETLNIILYEARNPPDQELMQATSTRGAVAGMSSYTSDEEEERSGL 179
           K H K + P   +Y E    +LY  RNP D   M  +S R     M+S + D+ E+    
Sbjct: 74  KTHLKADVPVLGLYGEATAKVLYLVRNPRD---MLLSSMR-----MASISRDDVEKSRDF 125

Query: 180 AR 181
           AR
Sbjct: 126 AR 127


>pdb|1ZLI|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
           In Complex With Human Carboxypeptidase B
          Length = 309

 Score = 28.5 bits (62), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 11/69 (15%)

Query: 28  LKEEQLLLNATAKPVVKLLINRHNNKYSY----------TSTSDDNLL-KNIELFDKLAL 76
           L E    LNA AK  VK L + H  KY+Y             SDD    + I       L
Sbjct: 212 LGENNAELNALAKATVKELASLHGTKYTYGPGATTIYPAAGGSDDWAYDQGIRYSFTFEL 271

Query: 77  RFSGRLLFI 85
           R +GR  F+
Sbjct: 272 RDTGRYGFL 280


>pdb|1KWM|A Chain A, Human Procarboxypeptidase B: Three-Dimensional Structure
           And Implications For Thrombin-Activatable Fibrinolysis
           Inhibitor (Tafi)
 pdb|1KWM|B Chain B, Human Procarboxypeptidase B: Three-Dimensional Structure
           And Implications For Thrombin-Activatable Fibrinolysis
           Inhibitor (Tafi)
          Length = 402

 Score = 27.7 bits (60), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 11/69 (15%)

Query: 28  LKEEQLLLNATAKPVVKLLINRHNNKYSY----------TSTSDDNLL-KNIELFDKLAL 76
           L E    LNA AK  VK L + H  KY+Y             SDD    + I       L
Sbjct: 305 LGENNAELNALAKATVKELASLHGTKYTYGPGATTIYPAAGGSDDWAYDQGIRYSFTFEL 364

Query: 77  RFSGRLLFI 85
           R +GR  F+
Sbjct: 365 RDTGRYGFL 373


>pdb|2FGE|A Chain A, Crystal Structure Of Presequence Protease Prep From
           Arabidopsis Thaliana
 pdb|2FGE|B Chain B, Crystal Structure Of Presequence Protease Prep From
           Arabidopsis Thaliana
          Length = 995

 Score = 27.7 bits (60), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 47  INRHNNKYSYTSTSDDNLLKNIELFD 72
            + H+  +SY S  D NLLK ++++D
Sbjct: 860 FDSHSGVFSYLSYRDPNLLKTLDIYD 885


>pdb|3NIB|A Chain A, Teg14 Apo
          Length = 309

 Score = 27.7 bits (60), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 120 KKHTKVEFPEARIYEETLNIILYEARNPPD 149
           K H K + P   +Y E    +LY  RNP D
Sbjct: 99  KTHLKADVPVLGLYSEATAKVLYLVRNPRD 128


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,138,805
Number of Sequences: 62578
Number of extensions: 191234
Number of successful extensions: 464
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 9
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)