BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy34
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q13829|BACD2_HUMAN BTB/POZ domain-containing adapter for CUL3-mediated RhoA
degradation protein 2 OS=Homo sapiens GN=TNFAIP1 PE=1
SV=1
Length = 316
Score = 234 bits (597), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/173 (64%), Positives = 140/173 (80%), Gaps = 4/173 (2%)
Query: 1 LTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTS 60
L ++C+ ++ K+ +P+C +P+ITSLKEE+ L+ ++ KPVVKLL NR NNKYSYTS S
Sbjct: 116 LVNMCQSALQDKKDSYQPVCNIPIITSLKEEERLIESSTKPVVKLLYNRSNNKYSYTSNS 175
Query: 61 DDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDK 120
DD+LLKNIELFDKL+LRF+GR+LFIKDVIG EICCWSF+G G+K+AEVCCTSIVYAT+K
Sbjct: 176 DDHLLKNIELFDKLSLRFNGRVLFIKDVIG-DEICCWSFYGQGRKLAEVCCTSIVYATEK 234
Query: 121 KHTKVEFPEARIYEETLNIILYEARNPPDQELMQATSTRGAVAGMSSYTSDEE 173
K TKVEFPEARIYEETLN++LYE PD L++ATS + A S + DEE
Sbjct: 235 KQTKVEFPEARIYEETLNVLLYETPRVPDNSLLEATSRSRSQA---SPSEDEE 284
>sp|Q5F3E8|BACD2_CHICK BTB/POZ domain-containing adapter for CUL3-mediated RhoA
degradation protein 2 OS=Gallus gallus GN=TNFAIP1 PE=2
SV=1
Length = 314
Score = 234 bits (597), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/166 (66%), Positives = 135/166 (81%), Gaps = 1/166 (0%)
Query: 1 LTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTS 60
L D+C+ ++ K+ EP+C +P+ITS KEE+ L+ ++ KPVVKLL NR NNKYSYTS S
Sbjct: 120 LVDMCQAALQDKKDLYEPVCNIPIITSPKEEERLIESSMKPVVKLLYNRSNNKYSYTSNS 179
Query: 61 DDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDK 120
DDNLLKNIELFDKL+LRF+GR+LFIKDVIG EICCWSF+G G+K+AEVCCTSIVYAT+K
Sbjct: 180 DDNLLKNIELFDKLSLRFNGRVLFIKDVIG-DEICCWSFYGQGRKLAEVCCTSIVYATEK 238
Query: 121 KHTKVEFPEARIYEETLNIILYEARNPPDQELMQATSTRGAVAGMS 166
K TKVEFPEARIYEETLN++LYE PD L++ATS + A S
Sbjct: 239 KQTKVEFPEARIYEETLNVLLYETPRVPDNSLLEATSRSRSQASHS 284
>sp|Q5RBH4|BACD2_PONAB BTB/POZ domain-containing adapter for CUL3-mediated RhoA
degradation protein 2 OS=Pongo abelii GN=TNFAIP1 PE=2
SV=1
Length = 316
Score = 234 bits (596), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/173 (64%), Positives = 140/173 (80%), Gaps = 4/173 (2%)
Query: 1 LTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTS 60
L ++C+ ++ K+ +P+C +P+ITSLKEE+ L+ ++ KPVVKLL NR NNKYSYTS S
Sbjct: 116 LVNMCQSALQDKKDSYQPVCNIPIITSLKEEERLIESSTKPVVKLLYNRSNNKYSYTSNS 175
Query: 61 DDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDK 120
DD+LLKNIELFDKL+LRF+GR+LFIKDVIG EICCWSF+G G+K+AEVCCTSIVYAT+K
Sbjct: 176 DDHLLKNIELFDKLSLRFNGRVLFIKDVIG-DEICCWSFYGQGRKLAEVCCTSIVYATEK 234
Query: 121 KHTKVEFPEARIYEETLNIILYEARNPPDQELMQATSTRGAVAGMSSYTSDEE 173
K TKVEFPEARIYEETLN++LYE PD L++ATS + A S + DEE
Sbjct: 235 KQTKVEFPEARIYEETLNVLLYETPRVPDNSLLEATSRSCSQA---SPSEDEE 284
>sp|Q7TNY1|BACD2_RAT BTB/POZ domain-containing adapter for CUL3-mediated RhoA
degradation protein 2 OS=Rattus norvegicus GN=Tnfaip1
PE=1 SV=1
Length = 316
Score = 233 bits (593), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 131/157 (83%), Gaps = 1/157 (0%)
Query: 1 LTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTS 60
L LC+ ++ K+ +P+C +P+ITSL+EE L+ ++ KPVVKLL NR NNKYSYTS S
Sbjct: 116 LVSLCQAALQDKKDSYQPVCNIPIITSLREEDRLIESSTKPVVKLLYNRSNNKYSYTSNS 175
Query: 61 DDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDK 120
DD+LLKNIELFDKL+LRF+GR+LFIKDVIG EICCWSF+G G+K+AEVCCTSIVYAT+K
Sbjct: 176 DDHLLKNIELFDKLSLRFNGRVLFIKDVIG-DEICCWSFYGQGRKLAEVCCTSIVYATEK 234
Query: 121 KHTKVEFPEARIYEETLNIILYEARNPPDQELMQATS 157
K TKVEFPEARIYEETLN++LYE PD L++ATS
Sbjct: 235 KQTKVEFPEARIYEETLNVLLYETPRVPDNSLLEATS 271
>sp|Q28DC9|BACD2_XENTR BTB/POZ domain-containing adapter for CUL3-mediated RhoA
degradation protein 2 OS=Xenopus tropicalis GN=tnfaip1
PE=2 SV=1
Length = 319
Score = 232 bits (591), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 113/173 (65%), Positives = 138/173 (79%), Gaps = 4/173 (2%)
Query: 1 LTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTS 60
L D C+ ++ K E +C +P+ITS KEE+ L+ ++AKPVVKLL NR NNKYSYTS S
Sbjct: 119 LVDKCQAALQDKNDTYEAVCNIPIITSPKEEEKLIESSAKPVVKLLYNRSNNKYSYTSNS 178
Query: 61 DDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDK 120
DDNLLKNIELFDKL+LRF+GR+LFIKDVIG EICCWSF+G G+K+AEVCCTSIVYAT+K
Sbjct: 179 DDNLLKNIELFDKLSLRFNGRVLFIKDVIG-DEICCWSFYGQGRKLAEVCCTSIVYATEK 237
Query: 121 KHTKVEFPEARIYEETLNIILYEARNPPDQELMQATSTRGAVAGMSSYTSDEE 173
K TKVEFPEARIYEETLN++LYE PD L++ATS + A S++ D+E
Sbjct: 238 KQTKVEFPEARIYEETLNVLLYETPRVPDNSLLEATSRTRSQA---SHSEDDE 287
>sp|Q2T9W0|BACD1_BOVIN BTB/POZ domain-containing adapter for CUL3-mediated RhoA
degradation protein 1 OS=Bos taurus GN=KCTD13 PE=2 SV=1
Length = 329
Score = 231 bits (588), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 108/156 (69%), Positives = 130/156 (83%), Gaps = 1/156 (0%)
Query: 1 LTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTS 60
L + C+ +++K+ P+C +P +TS +EEQ LL +T+KPVVKLL NR NNKYSYTSTS
Sbjct: 129 LIEDCQLALQQKRENVSPLCLIPTVTSPREEQQLLASTSKPVVKLLHNRSNNKYSYTSTS 188
Query: 61 DDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDK 120
DDNLLKNIELFDKLALRF GRLLF+KDV+G EICCWSF+G G+KIAEVCCTSIVYAT+K
Sbjct: 189 DDNLLKNIELFDKLALRFHGRLLFLKDVLG-DEICCWSFYGQGRKIAEVCCTSIVYATEK 247
Query: 121 KHTKVEFPEARIYEETLNIILYEARNPPDQELMQAT 156
K TKVEFPEARI+EETLNI++YE PD L++AT
Sbjct: 248 KQTKVEFPEARIFEETLNILIYETPRGPDPALLEAT 283
>sp|O70479|BACD2_MOUSE BTB/POZ domain-containing adapter for CUL3-mediated RhoA
degradation protein 2 OS=Mus musculus GN=Tnfaip1 PE=1
SV=1
Length = 316
Score = 230 bits (587), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 106/157 (67%), Positives = 130/157 (82%), Gaps = 1/157 (0%)
Query: 1 LTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTS 60
L C+ ++ K+ +P+C +P+ITSL+EE L+ ++ KPVVKLL NR NNKYSYTS S
Sbjct: 116 LVSTCQTALQDKKDSYQPVCNIPIITSLREEDRLIESSTKPVVKLLYNRSNNKYSYTSNS 175
Query: 61 DDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDK 120
DD+LLKNIELFDKL+LRF+GR+LFIKDVIG EICCWSF+G G+K+AEVCCTSIVYAT+K
Sbjct: 176 DDHLLKNIELFDKLSLRFNGRVLFIKDVIG-DEICCWSFYGQGRKLAEVCCTSIVYATEK 234
Query: 121 KHTKVEFPEARIYEETLNIILYEARNPPDQELMQATS 157
K TKVEFPEARIYEETLN++LYE PD L++ATS
Sbjct: 235 KQTKVEFPEARIYEETLNVLLYETPRVPDNSLLEATS 271
>sp|Q9H3F6|BACD3_HUMAN BTB/POZ domain-containing adapter for CUL3-mediated RhoA
degradation protein 3 OS=Homo sapiens GN=KCTD10 PE=1
SV=1
Length = 313
Score = 229 bits (584), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 114/170 (67%), Positives = 135/170 (79%), Gaps = 7/170 (4%)
Query: 1 LTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTS 60
L + C+ ++ K EP C+VP+ITS KEEQ L+ + KP VKLL NR NNKYSYTS S
Sbjct: 120 LVEECQAALQNKDT-YEPFCKVPVITSSKEEQKLIATSNKPAVKLLYNRSNNKYSYTSNS 178
Query: 61 DDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDK 120
DDN+LKNIELFDKL+LRF+GR+LFIKDVIG EICCWSF+G G+KIAEVCCTSIVYAT+K
Sbjct: 179 DDNMLKNIELFDKLSLRFNGRVLFIKDVIG-DEICCWSFYGQGRKIAEVCCTSIVYATEK 237
Query: 121 KHTKVEFPEARIYEETLNIILYEARN--PPDQELMQATSTRGAVAGMSSY 168
K TKVEFPEARIYEETLNI+LYEA++ PD L++AT G AG S +
Sbjct: 238 KQTKVEFPEARIYEETLNILLYEAQDGRGPDNALLEAT---GGAAGRSHH 284
>sp|Q7TPL3|BACD3_RAT BTB/POZ domain-containing adapter for CUL3-mediated RhoA
degradation protein 3 OS=Rattus norvegicus GN=Kctd10
PE=1 SV=1
Length = 315
Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/170 (67%), Positives = 135/170 (79%), Gaps = 7/170 (4%)
Query: 1 LTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTS 60
L + C+ ++ K EP C+VP+ITS KEEQ L+ + KP VKLL NR NNKYSYTS S
Sbjct: 120 LLEECQAALQNKDT-YEPFCKVPVITSSKEEQRLIATSDKPAVKLLYNRSNNKYSYTSNS 178
Query: 61 DDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDK 120
DDN+LKNIELFDKL+LRF+GR+LFIKDVIG EICCWSF+G G+KIAEVCCTSIVYAT+K
Sbjct: 179 DDNMLKNIELFDKLSLRFNGRVLFIKDVIG-DEICCWSFYGQGRKIAEVCCTSIVYATEK 237
Query: 121 KHTKVEFPEARIYEETLNIILYEARN--PPDQELMQATSTRGAVAGMSSY 168
K TKVEFPEARIYEETLNI+LYEA++ PD L++AT G AG S +
Sbjct: 238 KQTKVEFPEARIYEETLNILLYEAQDGRGPDNALLEAT---GGAAGRSHH 284
>sp|Q922M3|BACD3_MOUSE BTB/POZ domain-containing adapter for CUL3-mediated RhoA
degradation protein 3 OS=Mus musculus GN=Kctd10 PE=1
SV=1
Length = 315
Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/170 (67%), Positives = 135/170 (79%), Gaps = 7/170 (4%)
Query: 1 LTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTS 60
L + C+ ++ K EP C+VP+ITS KEEQ L+ + KP VKLL NR NNKYSYTS S
Sbjct: 120 LLEECQAALQNKD-TYEPFCKVPVITSSKEEQRLIATSNKPAVKLLYNRSNNKYSYTSNS 178
Query: 61 DDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDK 120
DDN+LKNIELFDKL+LRF+GR+LFIKDVIG EICCWSF+G G+KIAEVCCTSIVYAT+K
Sbjct: 179 DDNMLKNIELFDKLSLRFNGRVLFIKDVIG-DEICCWSFYGQGRKIAEVCCTSIVYATEK 237
Query: 121 KHTKVEFPEARIYEETLNIILYEARN--PPDQELMQATSTRGAVAGMSSY 168
K TKVEFPEARIYEETLNI+LYEA++ PD L++AT G AG S +
Sbjct: 238 KQTKVEFPEARIYEETLNILLYEAQDGRGPDNALLEAT---GGAAGRSHH 284
>sp|Q5EAX2|BACD2_XENLA BTB/POZ domain-containing adapter for CUL3-mediated RhoA
degradation protein 2 OS=Xenopus laevis GN=tnfaip1 PE=2
SV=1
Length = 319
Score = 228 bits (580), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/173 (63%), Positives = 137/173 (79%), Gaps = 4/173 (2%)
Query: 1 LTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTS 60
L D C+ ++ E +C +P+ITS KEE+ L+ ++AKPVVKLL NR NNKYSYTS S
Sbjct: 119 LVDKCQTALQDTNDTYEAVCNIPIITSPKEEEKLIESSAKPVVKLLYNRSNNKYSYTSNS 178
Query: 61 DDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDK 120
DD+LLKNIELFDKL+LRF+GR+LFIKDVIG EICCWSF+G G+K+AEVCCTSIVYAT+K
Sbjct: 179 DDHLLKNIELFDKLSLRFNGRVLFIKDVIG-DEICCWSFYGQGRKLAEVCCTSIVYATEK 237
Query: 121 KHTKVEFPEARIYEETLNIILYEARNPPDQELMQATSTRGAVAGMSSYTSDEE 173
K TKVEFPEARIYEETLN++LYE PD L++ATS + +S++ D++
Sbjct: 238 KQTKVEFPEARIYEETLNVLLYETPRVPDNSLLEATSR---IRSQASHSEDDD 287
>sp|Q8WZ19|BACD1_HUMAN BTB/POZ domain-containing adapter for CUL3-mediated RhoA
degradation protein 1 OS=Homo sapiens GN=KCTD13 PE=1
SV=1
Length = 329
Score = 226 bits (577), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 106/154 (68%), Positives = 129/154 (83%), Gaps = 1/154 (0%)
Query: 1 LTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTS 60
L + C+ +++K+ P+C +P++TS +EEQ LL +T+KPVVKLL NR NNKYSYTSTS
Sbjct: 129 LIEDCQLALQQKRETLSPLCLIPMVTSPREEQQLLASTSKPVVKLLHNRSNNKYSYTSTS 188
Query: 61 DDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDK 120
DDNLLKNIELFDKLALRF GRLLF+KDV+G EICCWSF+G G+KIAEVCCTSIVYAT+K
Sbjct: 189 DDNLLKNIELFDKLALRFHGRLLFLKDVLG-DEICCWSFYGQGRKIAEVCCTSIVYATEK 247
Query: 121 KHTKVEFPEARIYEETLNIILYEARNPPDQELMQ 154
K TKVEFPEARI+EETLNI++YE PD L++
Sbjct: 248 KQTKVEFPEARIFEETLNILIYETPRGPDPALLE 281
>sp|Q8BGV7|BACD1_MOUSE BTB/POZ domain-containing adapter for CUL3-mediated RhoA
degradation protein 1 OS=Mus musculus GN=Kctd13 PE=2
SV=1
Length = 329
Score = 226 bits (575), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 106/154 (68%), Positives = 129/154 (83%), Gaps = 1/154 (0%)
Query: 1 LTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTS 60
L + C+ +++K+ + P+C +P +TS +EEQ LL +T+KPVVKLL NR NNKYSYTSTS
Sbjct: 129 LIEDCQLALQQKREKLSPLCLIPTVTSPREEQQLLASTSKPVVKLLHNRSNNKYSYTSTS 188
Query: 61 DDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDK 120
DDNLLKNIELFDKLALRF GRLLF+KDV+G EICCWSF+G G+KIAEVCCTSIVYAT+K
Sbjct: 189 DDNLLKNIELFDKLALRFHGRLLFLKDVLG-DEICCWSFYGQGRKIAEVCCTSIVYATEK 247
Query: 121 KHTKVEFPEARIYEETLNIILYEARNPPDQELMQ 154
K TKVEFPEARI+EETLNI++YE PD L++
Sbjct: 248 KQTKVEFPEARIFEETLNILIYENSRGPDLALLE 281
>sp|Q9UKN8|TF3C4_HUMAN General transcription factor 3C polypeptide 4 OS=Homo sapiens
GN=GTF3C4 PE=1 SV=2
Length = 822
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 41 PVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIKDVIGS 91
P+V + ++ N YT +SD + + I +F +AL+F +L+ + DV GS
Sbjct: 425 PIVSMTADKQNGTV-YTCSSDGKVRQLIPIFTDVALKFEHQLIKLSDVFGS 474
>sp|Q8BMQ2|TF3C4_MOUSE General transcription factor 3C polypeptide 4 OS=Mus musculus
GN=Gtf3c4 PE=1 SV=2
Length = 817
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 41 PVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIKDVIGS 91
P+V + ++ N YT +SD + + I +F +AL+F +L+ + DV GS
Sbjct: 421 PIVSITADKQNGTV-YTCSSDGKVRQLIPIFTDVALKFEHQLIKLSDVFGS 470
>sp|Q922R0|PRKX_MOUSE cAMP-dependent protein kinase catalytic subunit PRKX OS=Mus
musculus GN=Prkx PE=1 SV=1
Length = 355
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 19 ICRVPLITSLKEEQLLLNATA------KP-VVKLLINRHNNKYSYTSTSDDNLLKNIELF 71
I +P + LK+EQ + N A P ++KLL H+N++ Y + ELF
Sbjct: 76 IMSIPDVIRLKQEQHVQNEKAVLKEINHPFLIKLLWTGHDNRFLYMLM---EFVPGGELF 132
Query: 72 DKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIA 107
LR GR + V ++EI C + H K+I
Sbjct: 133 --TYLRNRGRFSSVASVFYATEIVCAIEYLHSKEIV 166
>sp|Q6CL75|SEC31_KLULA Protein transport protein SEC31 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SEC31 PE=3 SV=1
Length = 1231
Score = 30.8 bits (68), Expect = 6.1, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 23 PLITSLKEEQLLLNA-TAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGR 81
P I+ L++ QL + +K VKL+ R + K + T+ D NLL+N+ + G
Sbjct: 401 PCISGLEKNQLFDESLKSKDFVKLINKRLSQKINATNEDDWNLLENLSM--------DGT 452
Query: 82 LLFIKDVI 89
L++KD +
Sbjct: 453 ALYLKDAL 460
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,016,130
Number of Sequences: 539616
Number of extensions: 2561225
Number of successful extensions: 6810
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6780
Number of HSP's gapped (non-prelim): 23
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)