Query psy34
Match_columns 190
No_of_seqs 47 out of 49
Neff 2.6
Searched_HMMs 46136
Date Sat Aug 17 00:01:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy34.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/34hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2716|consensus 99.8 1.1E-19 2.5E-24 155.3 2.1 136 1-154 93-229 (230)
2 PF11025 GP40: Glycoprotein GP 47.9 17 0.00037 30.9 2.6 33 92-124 5-42 (165)
3 PF11385 DUF3189: Protein of u 47.6 15 0.00032 30.0 2.2 31 63-94 33-64 (148)
4 PF14280 DUF4365: Domain of un 47.4 39 0.00084 25.2 4.3 69 45-135 57-126 (138)
5 PF13279 4HBT_2: Thioesterase- 43.9 97 0.0021 22.0 5.7 27 102-130 88-116 (121)
6 PHA00455 hypothetical protein 35.8 20 0.00043 27.8 1.1 16 43-58 1-16 (85)
7 PF04721 DUF750: Domain of unk 34.4 25 0.00055 25.3 1.5 18 42-59 3-20 (62)
8 PF11424 DUF3195: Protein of u 31.1 9.8 0.00021 29.7 -1.2 14 63-76 59-72 (89)
9 PRK09856 fructoselysine 3-epim 26.9 2.7E+02 0.0058 22.8 6.4 66 25-104 158-225 (275)
10 KOG1803|consensus 26.5 11 0.00025 37.7 -1.9 85 16-116 371-462 (649)
11 KOG4731|consensus 25.7 40 0.00087 33.2 1.6 59 67-140 167-227 (512)
12 PF15068 FAM101: FAM101 family 23.0 67 0.0014 28.4 2.3 26 96-121 89-120 (207)
13 PRK05667 dnaG DNA primase; Val 22.6 1.5E+02 0.0032 28.9 4.7 46 74-136 191-237 (580)
14 cd03068 PDI_b_ERp72 PDIb famil 21.4 1.9E+02 0.0041 21.5 4.2 27 22-48 2-29 (107)
15 KOG0427|consensus 21.1 55 0.0012 27.8 1.4 23 113-135 55-77 (161)
16 PF12447 DUF3683: Protein of u 21.0 38 0.00083 27.5 0.4 14 53-66 8-21 (115)
17 cd02982 PDI_b'_family Protein 20.8 93 0.002 21.3 2.3 38 39-86 12-49 (103)
18 COG1424 BioW Pimeloyl-CoA synt 20.5 52 0.0011 29.5 1.2 18 73-90 202-219 (239)
No 1
>KOG2716|consensus
Probab=99.76 E-value=1.1e-19 Score=155.32 Aligned_cols=136 Identities=33% Similarity=0.307 Sum_probs=128.3
Q ss_pred ChHHHHHHHHhhcccCCCceeeeeeeChHHHHHHHHhcCCceEEEEEeecCceeeecccCchhhhhhhhhhhhhcceecC
Q psy34 1 LTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSG 80 (190)
Q Consensus 1 Lv~~Cq~aL~~~~~~~~p~C~vp~itS~~ee~~Li~~s~kPvVKL~~NR~NNKYSYTs~SDDnlLKNiELFDKLslrF~g 80 (190)
||+.|+.+++.+.....+ +++|..|...+|+.+.||+|.+.|+++||+++|++++.|....+++.+|++...|
T Consensus 93 Lv~~C~~~i~~~~~~~~~-----~~~~~~e~~~ii~~~~Kp~l~i~y~~~~~~~~~~p~~f~~~~~~e~~~d~l~i~f-- 165 (230)
T KOG2716|consen 93 LVELCQSAIARLIRGYIT-----PIESSEELLQIIANSSKPVLVINYNRANNELSYPPNGFDFQEFNEEYSDKLDNYF-- 165 (230)
T ss_pred HHHHHHHHhhhcccCccc-----cccchHHHHHHhhccCCCeEEEEecCCCCceeeCCCCCcHHHHHHHHHHHHHhHh--
Confidence 789999999998765544 8999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCceeEeEeeeCceeeeeEeeeeeEeecccceeeeeCCccccchhhhheeccccC-CCCChHHHH
Q psy34 81 RLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKVEFPEARIYEETLNIILYEAR-NPPDQELMQ 154 (190)
Q Consensus 81 RvLFiKDV~g~~EIC~WsFyG~grk~aEVcCtSIvYaTeKK~TKVEFPEARIyEEtLNiLlyE~~-~~pd~~ll~ 154 (190)
+++|||+||++++|..+.||.+.+++..+++++..+++++.|.++++.|+++.+ .+|+..++.
T Consensus 166 -----------~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 229 (230)
T KOG2716|consen 166 -----------KESESESFELTIKKFPERCKDSEVPSWAKSFVKSFISEIRIYITSLFKLLKEINQRLPLNSLLG 229 (230)
T ss_pred -----------hhhhhhhhhccccccCCccccCCCchhhhhhhhhhhhHHHHHHHHHHHHHHHHhhccchhhhhc
Confidence 799999999999999999999999999999999999999999999999999887 788877765
No 2
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=47.86 E-value=17 Score=30.92 Aligned_cols=33 Identities=45% Similarity=0.817 Sum_probs=27.3
Q ss_pred CceeEeEe---eeCceeeeeEeee--eeEeecccceee
Q psy34 92 SEICCWSF---FGHGKKIAEVCCT--SIVYATDKKHTK 124 (190)
Q Consensus 92 ~EIC~WsF---yG~grk~aEVcCt--SIvYaTeKK~TK 124 (190)
.|-|-=|| ||+|--+|-.-|. -||||.+|-||-
T Consensus 5 keeCgtsFvmWf~~GtpvaTlkcg~YTiVyAP~k~~t~ 42 (165)
T PF11025_consen 5 KEECGTSFVMWFGEGTPVATLKCGDYTIVYAPEKDQTD 42 (165)
T ss_pred hhhcceeEEEEecCCcceEEEecCCEEEEEccccCCCC
Confidence 35565554 8999999999996 699999999985
No 3
>PF11385 DUF3189: Protein of unknown function (DUF3189); InterPro: IPR021525 This family of proteins with unknown function appears to be restricted to Firmicutes
Probab=47.57 E-value=15 Score=30.05 Aligned_cols=31 Identities=35% Similarity=0.605 Sum_probs=27.2
Q ss_pred hhhhhhhhhhhhcceecCeEEEE-EecCCCCce
Q psy34 63 NLLKNIELFDKLALRFSGRLLFI-KDVIGSSEI 94 (190)
Q Consensus 63 nlLKNiELFDKLslrF~gRvLFi-KDV~g~~EI 94 (190)
.-|.+|..|||+.-.=.|++.|+ +|--| |+|
T Consensus 33 ~el~~lp~fd~~~~~d~G~l~y~G~De~g-n~V 64 (148)
T PF11385_consen 33 EELLSLPYFDKLEKEDIGRLIYMGTDEYG-NEV 64 (148)
T ss_pred HHHhCChhhcCCCcCcCceEEEEEEcCCC-CEE
Confidence 33889999999999999999999 89888 565
No 4
>PF14280 DUF4365: Domain of unknown function (DUF4365)
Probab=47.42 E-value=39 Score=25.16 Aligned_cols=69 Identities=12% Similarity=0.370 Sum_probs=38.9
Q ss_pred EEEeecCceeeecccCchhhhhhhhhhhhhcceecCeEEEEEecCCCC-ceeEeEeeeCceeeeeEeeeeeEeeccccee
Q psy34 45 LLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIKDVIGSS-EICCWSFFGHGKKIAEVCCTSIVYATDKKHT 123 (190)
Q Consensus 45 L~~NR~NNKYSYTs~SDDnlLKNiELFDKLslrF~gRvLFiKDV~g~~-EIC~WsFyG~grk~aEVcCtSIvYaTeKK~T 123 (190)
..+...+..|+|+-. .+.++.+.- .+..|++| |...+ +.|-|..- .+..+.. .++.+
T Consensus 57 ~~~~~~~~~~~~~~~--------~~~l~y~~~-~~~PvilV--~~~~~~~~~yW~~l-~~~~~~~----------~~~~~ 114 (138)
T PF14280_consen 57 YFYENDDGSFSFPLD--------KEHLNYWLN-HPVPVILV--LVDPDSDCAYWVSL-KGYPINS----------NQKSI 114 (138)
T ss_pred ccccCCCceEEEeeC--------HHHHHHHhc-CCCCEEEE--EEeCCCCEEEEEEc-ccCcccC----------CCceE
Confidence 444467778888643 122333333 66677777 44433 44555432 2221111 78999
Q ss_pred eeeCCccccchh
Q psy34 124 KVEFPEARIYEE 135 (190)
Q Consensus 124 KVEFPEARIyEE 135 (190)
+|.||.+.++..
T Consensus 115 ~v~ip~~~~l~~ 126 (138)
T PF14280_consen 115 TVRIPKSNLLDD 126 (138)
T ss_pred EEEecccccCCH
Confidence 999999987654
No 5
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=43.87 E-value=97 Score=22.03 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=16.8
Q ss_pred Ccee--eeeEeeeeeEeecccceeeeeCCcc
Q psy34 102 HGKK--IAEVCCTSIVYATDKKHTKVEFPEA 130 (190)
Q Consensus 102 ~grk--~aEVcCtSIvYaTeKK~TKVEFPEA 130 (190)
.|+. +|+.-.+.+.+..+++ ++.+|+.
T Consensus 88 ~g~~~~~a~~~~~~v~~d~~~r--~~~~P~~ 116 (121)
T PF13279_consen 88 DGKGELAATGRTVMVFVDYKTR--SVPIPDE 116 (121)
T ss_dssp TTEEEEEEEEEEEEEEEETTTC--E-B--HH
T ss_pred CCceEEEEEEEEEEEEEeCCCC--cCCCCHH
Confidence 5665 7777777777766663 8888864
No 6
>PHA00455 hypothetical protein
Probab=35.79 E-value=20 Score=27.84 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.2
Q ss_pred EEEEEeecCceeeecc
Q psy34 43 VKLLINRHNNKYSYTS 58 (190)
Q Consensus 43 VKL~~NR~NNKYSYTs 58 (190)
++|.|||+|+-||-..
T Consensus 1 ~rLhfNksng~Fsvr~ 16 (85)
T PHA00455 1 MRLHFNKSNGIFSVRR 16 (85)
T ss_pred CceeEeccCCeEEEec
Confidence 4799999999999643
No 7
>PF04721 DUF750: Domain of unknown function (DUF750) ; InterPro: IPR006588 The PAW domain (present in PNGases and other worm proteins) is found as a single copy at the C terminus of metazoan peptide:N-glycanase (PNGase) and in multiple copies in hypothetical Caenorhabditis elegans proteins peptide:N-glycanases (PNGases) []. The C-terminal PAW domain of PNGase binds to the mannose moieties of N-linked oligosaccharide chains []. The PAW domain is a slightly elongated molecule and displays a beta-sandwich architecture, which is composed of two layers, containing nine and eight antiparallel beta-strands, respectively, and three additional short helices []. Some proteins known to contain a PAW domain are listed below: Animal peptide:N-glycanase (PNGase) 3.5.1.52 from EC, catalyses the deglycosylation of several misfolded N-linked glycoproteins by cleaving the bulky glycan chain before the proteins are degraded by the proteasome. Caenorhabditis elegans putative uncharacterised protein C17B7.5. ; GO: 0006516 glycoprotein catabolic process, 0005737 cytoplasm; PDB: 2G9F_A 2I74_B 2G9G_A.
Probab=34.38 E-value=25 Score=25.30 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=13.1
Q ss_pred eEEEEEeecCceeeeccc
Q psy34 42 VVKLLINRHNNKYSYTST 59 (190)
Q Consensus 42 vVKL~~NR~NNKYSYTs~ 59 (190)
-||+.||--+|.||.+++
T Consensus 3 y~~FtYdii~d~YS~~~~ 20 (62)
T PF04721_consen 3 YVKFTYDIISDTYSHTNE 20 (62)
T ss_dssp ----EEETTTTEEEECCG
T ss_pred ccceeEEeccCEEEeeCC
Confidence 379999999999999976
No 8
>PF11424 DUF3195: Protein of unknown function (DUF3195); InterPro: IPR021540 This archaeal family of proteins has no known function. ; PDB: 1RKI_B.
Probab=31.10 E-value=9.8 Score=29.70 Aligned_cols=14 Identities=36% Similarity=0.767 Sum_probs=10.5
Q ss_pred hhhhhhhhhhhhcc
Q psy34 63 NLLKNIELFDKLAL 76 (190)
Q Consensus 63 nlLKNiELFDKLsl 76 (190)
.|+||||+||..|-
T Consensus 59 ~Lvk~iEi~d~Vs~ 72 (89)
T PF11424_consen 59 KLVKRIEIYDEVSR 72 (89)
T ss_dssp TTECEEEEESEEES
T ss_pred HHHhcEEeeccccc
Confidence 46788999887654
No 9
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=26.89 E-value=2.7e+02 Score=22.81 Aligned_cols=66 Identities=17% Similarity=0.280 Sum_probs=42.5
Q ss_pred eeChHHHHHHHHhcCCceEEEEEeecCceeeecccCchhhhhhhhhhhhhcceecCeEEE--EEecCCCCceeEeEeeeC
Q psy34 25 ITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLF--IKDVIGSSEICCWSFFGH 102 (190)
Q Consensus 25 itS~~ee~~Li~~s~kPvVKL~~NR~NNKYSYTs~SDDnlLKNiELFDKLslrF~gRvLF--iKDV~g~~EIC~WsFyG~ 102 (190)
+.++.+...++.....|-|+++++-.|- |... +++...|+. +.+||.. |||+.+... + ..+-|.
T Consensus 158 ~~t~~~~~~l~~~~~~~~v~~~~D~~h~---~~~~--~~~~~~i~~-------~~~rI~~vHi~D~~~~~~-~-~~~pG~ 223 (275)
T PRK09856 158 VCNANDVLHALALVPSPRLFSMVDICAP---YVQA--EPVMSYFDK-------LGDKLRHLHIVDSDGASD-T-HYIPGE 223 (275)
T ss_pred cCCHHHHHHHHHHcCCCcceeEEeecch---hcCC--CCHHHHHHH-------hCCcEEEEEEEcCCCCCC-C-CcCCCC
Confidence 5789999999999999999999988763 2221 234433332 3567644 599987422 2 224466
Q ss_pred ce
Q psy34 103 GK 104 (190)
Q Consensus 103 gr 104 (190)
|.
T Consensus 224 G~ 225 (275)
T PRK09856 224 GK 225 (275)
T ss_pred CC
Confidence 64
No 10
>KOG1803|consensus
Probab=26.52 E-value=11 Score=37.73 Aligned_cols=85 Identities=22% Similarity=0.406 Sum_probs=56.9
Q ss_pred CCCceeeeeeeChHHHHHHHHhcCCceEEEEEeecCceeeecccCchhhhhhhh--hhhhhcceecCeEEEEEec--CCC
Q psy34 16 TEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIE--LFDKLALRFSGRLLFIKDV--IGS 91 (190)
Q Consensus 16 ~~p~C~vp~itS~~ee~~Li~~s~kPvVKL~~NR~NNKYSYTs~SDDnlLKNiE--LFDKLslrF~gRvLFiKDV--~g~ 91 (190)
-+|.|+|||++++ |+..==.++--.=+--||++...|++ |||+|+-.|++++--+=++ .-+
T Consensus 371 mE~~cWipvlk~k---------------k~ILaGDp~QLpP~v~S~~a~~~gl~~Sl~erlae~~~~~~~~~Ln~QYRMn 435 (649)
T KOG1803|consen 371 MEPQCWIPVLKGK---------------KFILAGDPKQLPPTVLSDKAKRGGLQVSLLERLAEKFGNLSKILLNEQYRMN 435 (649)
T ss_pred ccchhhhHHhcCC---------------ceEEeCCcccCCcccccchhhhccchhhHHHHHHHHcccchhhhhhhhhcch
Confidence 3688999999987 22222222223335568888888764 7999999999996544344 224
Q ss_pred CceeEeE---eeeCceeeeeEeeeeeEe
Q psy34 92 SEICCWS---FFGHGKKIAEVCCTSIVY 116 (190)
Q Consensus 92 ~EIC~Ws---FyG~grk~aEVcCtSIvY 116 (190)
..|--|| ||+ |...|...|.+..-
T Consensus 436 ~~Im~wsn~~fY~-~qlka~~~v~~~lL 462 (649)
T KOG1803|consen 436 EKIMNWSNEVFYN-GQLKAASSVASHLL 462 (649)
T ss_pred HHHhhCcHhhhcC-Ceeeecchhhhhhh
Confidence 5788896 775 67777777766554
No 11
>KOG4731|consensus
Probab=25.69 E-value=40 Score=33.19 Aligned_cols=59 Identities=31% Similarity=0.369 Sum_probs=46.7
Q ss_pred hhhhhhhhcceecCeEEEEEecCC-CCceeEeEee-eCceeeeeEeeeeeEeecccceeeeeCCccccchhhhhee
Q psy34 67 NIELFDKLALRFSGRLLFIKDVIG-SSEICCWSFF-GHGKKIAEVCCTSIVYATDKKHTKVEFPEARIYEETLNII 140 (190)
Q Consensus 67 NiELFDKLslrF~gRvLFiKDV~g-~~EIC~WsFy-G~grk~aEVcCtSIvYaTeKK~TKVEFPEARIyEEtLNiL 140 (190)
|||.||. |-|+|++-.= .+.-=-|.|| |.|- ++-|+|-||.--.-||++++||-+++.+
T Consensus 167 nieviDa-------rTlki~~Fsy~g~~~~~~y~~AG~G~--------~~s~~s~kk~ai~~~~~~~~~~~sl~~~ 227 (512)
T KOG4731|consen 167 NIEVIDA-------RTLKIPCFSYDGKYRPRWYFNAGRGD--------IPSSASGKKLAIMAFDDEKGYETSLRMY 227 (512)
T ss_pred CeeEecc-------ceeeeccccccCccCCceEEeccccC--------cccccccceeeeecccccccCCchhHhh
Confidence 8899885 7778876632 1356689999 8886 5678999999999999999999888654
No 12
>PF15068 FAM101: FAM101 family
Probab=22.99 E-value=67 Score=28.43 Aligned_cols=26 Identities=35% Similarity=0.650 Sum_probs=20.1
Q ss_pred EeEeeeCceee-----eeEeeee-eEeecccc
Q psy34 96 CWSFFGHGKKI-----AEVCCTS-IVYATDKK 121 (190)
Q Consensus 96 ~WsFyG~grk~-----aEVcCtS-IvYaTeKK 121 (190)
|=.|||.|..+ .||-||| +.|++||-
T Consensus 89 ~P~~FGE~Ie~~P~P~~Eir~tS~VkYdSekh 120 (207)
T PF15068_consen 89 CPVSFGEGIEVDPLPPKEIRYTSSVKYDSEKH 120 (207)
T ss_pred eeeecCCceeecCCCceeEEEeeeEEEcchhh
Confidence 44688999764 7998876 67999983
No 13
>PRK05667 dnaG DNA primase; Validated
Probab=22.56 E-value=1.5e+02 Score=28.95 Aligned_cols=46 Identities=28% Similarity=0.550 Sum_probs=30.2
Q ss_pred hcceecCeEEE-EEecCCCCceeEeEeeeCceeeeeEeeeeeEeecccceeeeeCCccccchhh
Q psy34 74 LALRFSGRLLF-IKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKVEFPEARIYEET 136 (190)
Q Consensus 74 LslrF~gRvLF-iKDV~g~~EIC~WsFyG~grk~aEVcCtSIvYaTeKK~TKVEFPEARIyEEt 136 (190)
+.-+|.+||+| |+|..| .+ ..|.| |.+ .+.+.-=+--||..||...
T Consensus 191 ~yd~Fr~RimfPI~d~~G--~v--igF~G--R~l-----------~~~~pKYlNSpet~iF~K~ 237 (580)
T PRK05667 191 PYDRFRNRIMFPIRDLRG--RV--IGFGG--RVL-----------GDDKPKYLNSPETPLFHKG 237 (580)
T ss_pred cchhcCCeEEEEEECCCC--cE--EEEEe--eec-----------CCCCCeeeCCCCCCCccCC
Confidence 45689999999 599988 34 35555 422 1333333677888888765
No 14
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=21.39 E-value=1.9e+02 Score=21.53 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=19.3
Q ss_pred eeeeeChHHHHHHHHhc-CCceEEEEEe
Q psy34 22 VPLITSLKEEQLLLNAT-AKPVVKLLIN 48 (190)
Q Consensus 22 vp~itS~~ee~~Li~~s-~kPvVKL~~N 48 (190)
+-.|+|.++.+.++... ..+||=..-+
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~ 29 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSG 29 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECC
Confidence 34678999999988877 6777754444
No 15
>KOG0427|consensus
Probab=21.12 E-value=55 Score=27.79 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=19.0
Q ss_pred eeEeecccceeeeeCCccccchh
Q psy34 113 SIVYATDKKHTKVEFPEARIYEE 135 (190)
Q Consensus 113 SIvYaTeKK~TKVEFPEARIyEE 135 (190)
.-.||-|+=|.+|||||---+|-
T Consensus 55 GTLYa~e~~qLq~~F~~~YP~es 77 (161)
T KOG0427|consen 55 GTLYANETYQLQVEFPEHYPMES 77 (161)
T ss_pred ceeecCcEEEEEEecCCCCCCCC
Confidence 45899999999999999765553
No 16
>PF12447 DUF3683: Protein of unknown function (DUF3683); InterPro: IPR022153 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF02754 from PFAM, PF01565 from PFAM, PF02913 from PFAM.
Probab=21.01 E-value=38 Score=27.50 Aligned_cols=14 Identities=43% Similarity=0.676 Sum_probs=10.9
Q ss_pred eeeecccCchhhhh
Q psy34 53 KYSYTSTSDDNLLK 66 (190)
Q Consensus 53 KYSYTs~SDDnlLK 66 (190)
-|-|||.||..+.-
T Consensus 8 PYNYTS~sDReiV~ 21 (115)
T PF12447_consen 8 PYNYTSFSDREIVI 21 (115)
T ss_pred CCCCCCccHHHHHH
Confidence 48899999987653
No 17
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=20.77 E-value=93 Score=21.32 Aligned_cols=38 Identities=34% Similarity=0.593 Sum_probs=26.4
Q ss_pred CCceEEEEEeecCceeeecccCchhhhhhhhhhhhhcceecCeEEEEE
Q psy34 39 AKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK 86 (190)
Q Consensus 39 ~kPvVKL~~NR~NNKYSYTs~SDDnlLKNiELFDKLslrF~gRvLFiK 86 (190)
.+|++=+.++ ..+...-+=.+.|+++|-.|.|+|.|++
T Consensus 12 ~~~~~~~f~~----------~~~~~~~~~~~~~~~vA~~~~~~v~f~~ 49 (103)
T cd02982 12 GKPLLVLFYN----------KDDSESEELRERFKEVAKKFKGKLLFVV 49 (103)
T ss_pred CCCEEEEEEc----------CChhhHHHHHHHHHHHHHHhCCeEEEEE
Confidence 5788776642 1222334445679999999999999995
No 18
>COG1424 BioW Pimeloyl-CoA synthetase [Coenzyme metabolism]
Probab=20.48 E-value=52 Score=29.52 Aligned_cols=18 Identities=33% Similarity=0.868 Sum_probs=14.8
Q ss_pred hhcceecCeEEEEEecCC
Q psy34 73 KLALRFSGRLLFIKDVIG 90 (190)
Q Consensus 73 KLslrF~gRvLFiKDV~g 90 (190)
...-+++|||.||+|-+.
T Consensus 202 e~gt~~GgRVfFVd~~~d 219 (239)
T COG1424 202 EVGTRYGGRVFFVDDCID 219 (239)
T ss_pred ccCCccCcEEEEEcCccc
Confidence 456789999999988765
Done!