Query psy34
Match_columns 190
No_of_seqs 47 out of 49
Neff 2.6
Searched_HMMs 29240
Date Sat Aug 17 00:01:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy34.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/34hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2djk_A PDI, protein disulfide- 88.3 0.39 1.3E-05 34.2 3.4 59 19-89 2-63 (133)
2 3drx_A BTB/POZ domain-containi 84.4 0.56 1.9E-05 38.9 2.8 61 1-62 102-167 (202)
3 2av4_A Thioredoxin-like protei 63.2 29 0.001 27.7 7.5 75 22-106 23-108 (160)
4 1rki_A Hypothetical protein; s 38.5 7.6 0.00026 29.8 0.4 28 63-90 62-99 (102)
5 3bdk_A D-mannonate dehydratase 33.9 36 0.0012 29.9 3.9 56 24-90 233-292 (386)
6 1ep7_A Thioredoxin CH1, H-type 33.5 77 0.0026 20.3 4.7 60 21-90 3-66 (112)
7 1xwb_A Thioredoxin; dimerizati 20.0 1.7E+02 0.0058 18.2 5.1 54 22-85 2-56 (106)
8 1wou_A Thioredoxin -related pr 19.0 1.8E+02 0.0063 19.6 4.6 62 23-88 7-71 (123)
9 3hhl_A RPA0582; alpha-beta-bar 18.1 1.7E+02 0.006 22.2 4.7 61 27-87 9-74 (143)
10 2daf_A FLJ35834 protein; hypot 15.6 48 0.0016 25.5 1.0 14 72-87 55-68 (118)
No 1
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=88.34 E-value=0.39 Score=34.20 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=39.5
Q ss_pred ceeeeeee--ChHHHHHHHHhcCCceEEEEEeecCceeeecccCchhhhhhhhhhhhhcceecCeEEEEE-ecC
Q psy34 19 ICRVPLIT--SLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK-DVI 89 (190)
Q Consensus 19 ~C~vp~it--S~~ee~~Li~~s~kPvVKL~~NR~NNKYSYTs~SDDnlLKNiELFDKLslrF~gRvLFiK-DV~ 89 (190)
.|++|+|. +....+.++ .+.+||+-+++.- -.+-..+ ...|+++|-.|.|+|.|+| |+-
T Consensus 2 ~c~~plv~~~t~~~f~~~~-~~~~pv~v~f~a~---------~~~c~~~--~p~l~~~A~~~~gk~~f~~vd~d 63 (133)
T 2djk_A 2 PLGSPLIGEIGPETYSDYM-SAGIPLAYIFAET---------AEERKEL--SDKLKPIAEAQRGVINFGTIDAK 63 (133)
T ss_dssp CCSCCCSEECCHHHHHHHH-HTTSCEEEEECSC---------SSSHHHH--HHHHHHHHHSSTTTSEEEEECTT
T ss_pred CcccCceeccChHHHHHHh-cCCCCEEEEEecC---------hhhHHHH--HHHHHHHHHHhCCeEEEEEEchH
Confidence 58899875 556666665 5778988555421 1121223 3579999999999999996 543
No 2
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=84.42 E-value=0.56 Score=38.93 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=41.4
Q ss_pred ChHHHHHHHHhhccc---CCCceeeeeeeChHHHHHHHHhcCCceEE--EEEeecCceeeecccCch
Q psy34 1 LTDLCEQTIKRKQRE---TEPICRVPLITSLKEEQLLLNATAKPVVK--LLINRHNNKYSYTSTSDD 62 (190)
Q Consensus 1 Lv~~Cq~aL~~~~~~---~~p~C~vp~itS~~ee~~Li~~s~kPvVK--L~~NR~NNKYSYTs~SDD 62 (190)
|++.|+..|.++... ..+.|.++++.|++|+...+-++.++..| -|+|-+.+ |+|.+-...
T Consensus 102 Lv~~l~~~i~ere~~~~~~~~k~v~~v~qc~~~el~~~~s~~~d~~~~~~~~~~~~~-~~~~~~~~~ 167 (202)
T 3drx_A 102 LIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIGSS-YNYGNEDQA 167 (202)
T ss_dssp HHHHHHHHHHHHHHHHCCCSCCCEEEEEEECSTHHHHHHHTCCTTCEEEEEEEC-------------
T ss_pred HHHHHHHHHHHHhcccccCCCcceeeeeeCCHHHHHHHHHhhccccChhheEecccc-ccCCCcCcc
Confidence 578899999876653 35789999999999999999999999999 46776643 677665443
No 3
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=63.22 E-value=29 Score=27.66 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=55.5
Q ss_pred eeeeeChHHHHHHHH-hcCCceEEEEEeecCceeeecccCchhhhhhhhhhhhhcceecCeEEEEE-ecCCCC-------
Q psy34 22 VPLITSLKEEQLLLN-ATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK-DVIGSS------- 92 (190)
Q Consensus 22 vp~itS~~ee~~Li~-~s~kPvVKL~~NR~NNKYSYTs~SDDnlLKNiELFDKLslrF~gRvLFiK-DV~g~~------- 92 (190)
||.|+|..+.+..|. .+.+|||--. ...-.-.=-.=-..|++||-.|.+++.|+| ||--..
T Consensus 23 v~~l~t~~~f~~~v~~~~~k~VVVdF----------~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~ 92 (160)
T 2av4_A 23 LQHLNSGWAVDQAIVNEDERLVCIRF----------GHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYE 92 (160)
T ss_dssp CEECCSHHHHHHHHHHCSSSEEEEEE----------ECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTT
T ss_pred hhccCCHHHHHHHHHhcCCCEEEEEE----------ECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcC
Confidence 888999999887776 4788987643 444444444555789999999999888886 664422
Q ss_pred --ceeEeEeeeCceee
Q psy34 93 --EICCWSFFGHGKKI 106 (190)
Q Consensus 93 --EIC~WsFyG~grk~ 106 (190)
.|+.--||=.|+.+
T Consensus 93 V~siPT~~fFk~G~~v 108 (160)
T 2av4_A 93 LYDPVSVMFFYRNKHM 108 (160)
T ss_dssp CCSSEEEEEEETTEEE
T ss_pred CCCCCEEEEEECCEEE
Confidence 48999888888754
No 4
>1rki_A Hypothetical protein; structural genomics, (beta-alpha-beta)X2, beta-loop-beta-BET motif, unknown function; HET: P6G PG4; 1.60A {Pyrobaculum aerophilum} SCOP: d.308.1.2
Probab=38.53 E-value=7.6 Score=29.79 Aligned_cols=28 Identities=39% Similarity=0.675 Sum_probs=19.1
Q ss_pred hhhhhhhhhhhhccee----------cCeEEEEEecCC
Q psy34 63 NLLKNIELFDKLALRF----------SGRLLFIKDVIG 90 (190)
Q Consensus 63 nlLKNiELFDKLslrF----------~gRvLFiKDV~g 90 (190)
.|.||+|+||-.|-.= =|-+.|||-+.|
T Consensus 62 ~liK~vE~~d~Vs~s~Psc~~crvv~iG~~yFv~~~~~ 99 (102)
T 1rki_A 62 KLVKNIEIFDEVHNSKPNCDKCLIVEIGGVYFVRRVNG 99 (102)
T ss_dssp TTEEEEEEESEEESSCCCCSSEEEEEETTEEEEEECTT
T ss_pred HHHhcEEEeccccccCCCCCceEEEEEcCEEEEEeccC
Confidence 4689999999766432 255678876655
No 5
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=33.86 E-value=36 Score=29.88 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=41.7
Q ss_pred eeeChHHHHHHHHhcCCceEEEEEeecCceeeecccCchhhhhhhhhhhhhcceec--CeEEEE--EecCC
Q psy34 24 LITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFS--GRLLFI--KDVIG 90 (190)
Q Consensus 24 ~itS~~ee~~Li~~s~kPvVKL~~NR~NNKYSYTs~SDDnlLKNiELFDKLslrF~--gRvLFi--KDV~g 90 (190)
+|+++++.++|+.....|-++|++.-+| +..+.+.++..=|+ +|. +||-|| |||.+
T Consensus 233 iv~t~e~~~rll~~vdsp~~gl~lDtG~----l~~~~~~D~~~~i~-------~~~~~~RI~hvHlkDv~~ 292 (386)
T 3bdk_A 233 IITGQEAVERFLNLYDSEHNGITMCVGS----YASDPKNDVLAMTE-------YALKRNRINFMHTRNVTA 292 (386)
T ss_dssp CCCSHHHHHHHHHTTCSTTEEEEEEHHH----HHTSTTCCHHHHHH-------HHHHTTCEEEEECCCEEE
T ss_pred eeCCHHHHHHHHHhcCCCCEEEEEccCc----hhhcCCCCHHHHHH-------HhCCcCeEEEEeecCCCC
Confidence 6999999999999999999999999765 22222333444333 456 788887 89865
No 6
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=33.50 E-value=77 Score=20.33 Aligned_cols=60 Identities=27% Similarity=0.306 Sum_probs=37.9
Q ss_pred eeeeeeChHHHHHHHHh-c--CCceEEEEEeecCceeeecccCchhhhhhhhhhhhhcceecCeEEEEE-ecCC
Q psy34 21 RVPLITSLKEEQLLLNA-T--AKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK-DVIG 90 (190)
Q Consensus 21 ~vp~itS~~ee~~Li~~-s--~kPvVKL~~NR~NNKYSYTs~SDDnlLKNiELFDKLslrF~gRvLFiK-DV~g 90 (190)
.|.-|++.++-+.+|.. . .+|+|-..+. ..-..=-+-...|++++-.|.+.+.|++ |+-.
T Consensus 3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~----------~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 66 (112)
T 1ep7_A 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTA----------TWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA 66 (112)
T ss_dssp SEEEECSHHHHHHHHHHHHHHTCCEEEEEEC----------TTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT
T ss_pred cEEEecCHHHHHHHHHhhcccCCeEEEEEEC----------CCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 46778899999888876 3 7888766653 1111112223456778878887777774 5543
No 7
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=20.05 E-value=1.7e+02 Score=18.25 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=32.9
Q ss_pred eeeeeChHHHHHHHHh-cCCceEEEEEeecCceeeecccCchhhhhhhhhhhhhcceecCeEEEE
Q psy34 22 VPLITSLKEEQLLLNA-TAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFI 85 (190)
Q Consensus 22 vp~itS~~ee~~Li~~-s~kPvVKL~~NR~NNKYSYTs~SDDnlLKNiELFDKLslrF~gRvLFi 85 (190)
|.-|++.++-+.+++. ..+|+|-..+.- +... =-+-...|.+++-.|.+.+.|+
T Consensus 2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~------~C~~----C~~~~~~l~~~~~~~~~~~~~~ 56 (106)
T 1xwb_A 2 VYQVKDKADLDGQLTKASGKLVVLDFFAT------WCGP----CKMISPKLVELSTQFADNVVVL 56 (106)
T ss_dssp EEECCSHHHHHHHHHHHTTSEEEEEEECT------TCHH----HHHHHHHHHHHHHHTTTTEEEE
T ss_pred ceecCCHHHHHHHHHhcCCCEEEEEEECC------cCHH----HHHhhHHHHHHHHHhCCCeEEE
Confidence 4567887888888875 677877666531 1111 1222334667777776777776
No 8
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=19.01 E-value=1.8e+02 Score=19.56 Aligned_cols=62 Identities=11% Similarity=0.122 Sum_probs=37.6
Q ss_pred eeeeChHHHHHHHHh-cCCceEEEEEee-cCceeeecccCchhhhhhhhhhhhhcceecCeEEEEE-ec
Q psy34 23 PLITSLKEEQLLLNA-TAKPVVKLLINR-HNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK-DV 88 (190)
Q Consensus 23 p~itS~~ee~~Li~~-s~kPvVKL~~NR-~NNKYSYTs~SDDnlLKNiELFDKLslrF~gRvLFiK-DV 88 (190)
-.+++.++.+..|.. ..+|||-..+.- .+++-++....- +-...|++++-.|.+.+.|++ |+
T Consensus 7 v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~----~~~p~l~~~~~~~~~~~~~~~vd~ 71 (123)
T 1wou_A 7 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCV----QAEPVVREGLKHISEGCVFIYCQV 71 (123)
T ss_dssp EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHH----HHHHHHHHHGGGCCTTEEEEEEEC
T ss_pred EEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHH----HhhHHHHHHHHHcCCCcEEEEEEC
Confidence 356777888788876 688888766653 233333433221 122345677777877788874 55
No 9
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=18.08 E-value=1.7e+02 Score=22.23 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=44.0
Q ss_pred ChHHHHHHHHh-cCCceEEEEEeecCceeeecc----cCchhhhhhhhhhhhhcceecCeEEEEEe
Q psy34 27 SLKEEQLLLNA-TAKPVVKLLINRHNNKYSYTS----TSDDNLLKNIELFDKLALRFSGRLLFIKD 87 (190)
Q Consensus 27 S~~ee~~Li~~-s~kPvVKL~~NR~NNKYSYTs----~SDDnlLKNiELFDKLslrF~gRvLFiKD 87 (190)
++...+.+.+. ...||+=|-..|-+.+=.|.. +..+.+-+=.+++-...-+|+||+|+.-.
T Consensus 9 ~~~~~~~~~~~~~~~pv~MlNLlrf~~~a~y~dg~~vtd~e~y~~Y~~~~~~~l~~~GG~~l~rG~ 74 (143)
T 3hhl_A 9 TKEVFAQFRANDREGPIHMLNLVRLRPRAAYPDGRETTGAEAYAAYGRDSGPVSERLGGXVVWQGQ 74 (143)
T ss_dssp CHHHHHHHHHCCCSSCEEEEEEEEECSBCCCTTCCCCBHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHhCCCCCCEEEEehhcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEeecC
Confidence 45666677744 478999999999888877764 22345555566777777899999998733
No 10
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.63 E-value=48 Score=25.51 Aligned_cols=14 Identities=43% Similarity=0.926 Sum_probs=11.9
Q ss_pred hhhcceecCeEEEEEe
Q psy34 72 DKLALRFSGRLLFIKD 87 (190)
Q Consensus 72 DKLslrF~gRvLFiKD 87 (190)
|.+-|.|+|||| ||
T Consensus 55 e~qrLIy~GKiL--KD 68 (118)
T 2daf_A 55 SVLQIRYSGKIL--KN 68 (118)
T ss_dssp TTEEEEETTEEE--CS
T ss_pred HHEEEEECCeEc--CC
Confidence 567899999998 77
Done!