Query psy34
Match_columns 190
No_of_seqs 47 out of 49
Neff 2.6
Searched_HMMs 13730
Date Sat Aug 17 00:02:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy34.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/34hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u5tb1 a.4.5.54 (B:396-489) V 61.9 2.1 0.00015 30.3 2.4 38 46-85 48-92 (94)
2 d1ep7a_ c.47.1.1 (A:) Thioredo 52.5 11 0.00077 24.8 4.7 58 21-88 3-64 (112)
3 d1tz9a_ c.1.15.6 (A:) Mannonat 42.5 2.7 0.0002 34.8 0.3 63 24-100 221-285 (353)
4 d1maia_ b.55.1.1 (A:) Phosphol 41.6 3.8 0.00027 27.2 0.9 24 107-130 81-104 (119)
5 d2cqca1 d.58.7.1 (A:109-191) A 39.1 37 0.0027 20.6 5.7 65 19-85 14-83 (83)
6 d2cpza1 d.58.7.1 (A:383-484) C 37.7 39 0.0029 21.6 5.7 65 19-85 23-92 (102)
7 d1uwva1 b.40.4.12 (A:15-74) rR 32.7 42 0.003 20.3 4.9 38 76-114 18-55 (60)
8 d2zkmx3 b.55.1.1 (X:11-141) Ph 29.0 6.7 0.00049 27.7 0.5 39 106-144 83-127 (131)
9 d1iwga5 d.225.1.1 (A:182-273) 27.0 5.5 0.0004 26.2 -0.3 40 49-89 44-85 (92)
10 d2nxya1 d.172.1.1 (A:83-491) g 23.5 20 0.0014 29.5 2.5 15 32-46 27-41 (316)
11 d1fb6a_ c.47.1.1 (A:) Thioredo 22.6 65 0.0048 19.8 4.5 67 31-107 9-85 (104)
12 d1ky9b2 b.36.1.4 (B:359-446) P 20.6 29 0.0021 22.0 2.4 29 25-54 57-85 (88)
13 d1qgva_ c.47.1.8 (A:) spliceos 20.4 68 0.0049 22.0 4.6 64 22-95 4-69 (137)
No 1
>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=61.89 E-value=2.1 Score=30.35 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=28.6
Q ss_pred EEeec-CceeeecccCchhhhhhhhhhhhhcc------eecCeEEEE
Q psy34 46 LINRH-NNKYSYTSTSDDNLLKNIELFDKLAL------RFSGRLLFI 85 (190)
Q Consensus 46 ~~NR~-NNKYSYTs~SDDnlLKNiELFDKLsl------rF~gRvLFi 85 (190)
+|||. .+--..-|- +.|+|=.|+||||.| ||+++||-|
T Consensus 48 ~~NRaR~~G~eLiSP--~D~~~Ac~~~e~l~L~p~~Lr~f~sgvlvv 92 (94)
T d1u5tb1 48 MYNKSMRIGTGLISP--MEMREACERFEHLGLNELKLVKVNKRILCV 92 (94)
T ss_dssp HHHHTTTSSSCCCCH--HHHHHHHTTTGGGTCCSCEEEEETTTEEEE
T ss_pred HHHHhhhcCCcccCH--HHHHHHHHHHHhCCCCceEEEEecCceEEe
Confidence 46774 233444444 459999999999999 799999987
No 2
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=52.46 E-value=11 Score=24.79 Aligned_cols=58 Identities=28% Similarity=0.342 Sum_probs=40.0
Q ss_pred eeeeeeChHHHHHHHHh---cCCceEEEEEeecCceeeecccCchhhhhhhhhhhhhcceecCeEEEEE-ec
Q psy34 21 RVPLITSLKEEQLLLNA---TAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK-DV 88 (190)
Q Consensus 21 ~vp~itS~~ee~~Li~~---s~kPvVKL~~NR~NNKYSYTs~SDDnlLKNiELFDKLslrF~gRvLFiK-DV 88 (190)
.|..|+|.++-+..|+. ..||||-.+| +..-..=..-...|++|+-.|+|+|.|++ |+
T Consensus 3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~----------a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~ 64 (112)
T d1ep7a_ 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFT----------ATWCGPCKMIAPLFETLSNDYAGKVIFLKVDV 64 (112)
T ss_dssp SEEEECSHHHHHHHHHHHHHHTCCEEEEEE----------CTTCHHHHHHHHHHHHHHHHTTTTSEEEEEET
T ss_pred CEEEEeCHHHHHHHHHHHhhcCCeEEEEEE----------cCCcCCCcccchhhhhhhhcccceEEEEEeec
Confidence 47789999998888854 5688876543 22222334445667899999999888884 44
No 3
>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus faecalis (Streptococcus faecalis) [TaxId: 1351]}
Probab=42.46 E-value=2.7 Score=34.82 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=44.8
Q ss_pred eeeChHHHHHHHHhcCCceEEEEEeecCceeeecccCchhhhhhhhhhhhhcceecCeEEEE--EecCCCCceeEeEee
Q psy34 24 LITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFI--KDVIGSSEICCWSFF 100 (190)
Q Consensus 24 ~itS~~ee~~Li~~s~kPvVKL~~NR~NNKYSYTs~SDDnlLKNiELFDKLslrF~gRvLFi--KDV~g~~EIC~WsFy 100 (190)
+++++++.++|+.....|.++|++.-+| +....+.++. +.+.+ |.+||-|| |||.+..+ ++||
T Consensus 221 iv~t~ed~~~ll~~v~Sp~~Gl~~D~G~----~~~~~~~D~~---~~i~~----~gdRI~~vHlrDv~~~~~---~~F~ 285 (353)
T d1tz9a_ 221 ITKNLADLKRILSLVDSPANGITFCTGS----LGADPTNDLP---TMIRE----IGHRINFVHFRNVKYLGE---HRFE 285 (353)
T ss_dssp CTTSHHHHHHHHHHTCSTTEECCEETTH----HHHSTTSCHH---HHHHH----HGGGCCCEEECCEEECSS---SEEE
T ss_pred cccCHHHHHHHHHhCCCccceEEEcCCc----chhccCccHH---HHHHH----HhccceEEeeeccccCCC---CCce
Confidence 6889999999999999999999998654 2233443443 44444 45788887 99977433 4565
No 4
>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=41.60 E-value=3.8 Score=27.18 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=17.8
Q ss_pred eeEeeeeeEeecccceeeeeCCcc
Q psy34 107 AEVCCTSIVYATDKKHTKVEFPEA 130 (190)
Q Consensus 107 aEVcCtSIvYaTeKK~TKVEFPEA 130 (190)
.+=+|-||||.++.|...+..|-.
T Consensus 81 ~~~~~FsIv~~~~~r~l~l~a~s~ 104 (119)
T d1maia_ 81 PEDRCFSIVFKDQRNTLDLIAPSP 104 (119)
T ss_dssp CGGGEEEEEESSSCCCEEEECSSH
T ss_pred CcCceEEEEEcCCCcEEEEEECCH
Confidence 445788999998888777776643
No 5
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.10 E-value=37 Score=20.65 Aligned_cols=65 Identities=9% Similarity=0.230 Sum_probs=41.9
Q ss_pred ceeeeeeeChHHHHHHHHhcCCce-EEEEEeecCce---eeecccCchhh-hhhhhhhhhhcceecCeEEEE
Q psy34 19 ICRVPLITSLKEEQLLLNATAKPV-VKLLINRHNNK---YSYTSTSDDNL-LKNIELFDKLALRFSGRLLFI 85 (190)
Q Consensus 19 ~C~vp~itS~~ee~~Li~~s~kPv-VKL~~NR~NNK---YSYTs~SDDnl-LKNiELFDKLslrF~gRvLFi 85 (190)
+..+|--++.++-+.+.+....-. |++..++.+++ |.|-.-.+..- .+=|+-+|. ..|+||.|-|
T Consensus 14 V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~gr~i~V 83 (83)
T d2cqca1 14 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG--MELDGRRIRV 83 (83)
T ss_dssp EESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT--EEETTEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHhCCCccccccccccccccccceEEEECCHHHHHHHHHHcCC--CEECCEEeEC
Confidence 456788899999999998887432 56777776554 77765544332 233445554 4567887654
No 6
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.70 E-value=39 Score=21.64 Aligned_cols=65 Identities=14% Similarity=0.234 Sum_probs=45.4
Q ss_pred ceeeeeeeChHHHHHHHHhcCCce-EEEEEeecCce---eeecccCchhhhhh-hhhhhhhcceecCeEEEE
Q psy34 19 ICRVPLITSLKEEQLLLNATAKPV-VKLLINRHNNK---YSYTSTSDDNLLKN-IELFDKLALRFSGRLLFI 85 (190)
Q Consensus 19 ~C~vp~itS~~ee~~Li~~s~kPv-VKL~~NR~NNK---YSYTs~SDDnlLKN-iELFDKLslrF~gRvLFi 85 (190)
+..||-=++.++-..+.+....++ +++.+++.+++ |-|-.-.+..-.+. |+-++. ..|+||.|-|
T Consensus 23 V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng--~~~~g~~i~V 92 (102)
T d2cpza1 23 IYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG--FQIGMKRLKV 92 (102)
T ss_dssp EESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT--CEETTEECEE
T ss_pred EeCCCCCCCHHHHHHHHHhhccccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCC--CEECCEEEEE
Confidence 456777788999999998887665 78888887665 77776555444444 455554 4567887766
No 7
>d1uwva1 b.40.4.12 (A:15-74) rRNA (Uracil-5-)-methyltransferase RumA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.68 E-value=42 Score=20.34 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=25.6
Q ss_pred ceecCeEEEEEecCCCCceeEeEeeeCceeeeeEeeeee
Q psy34 76 LRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSI 114 (190)
Q Consensus 76 lrF~gRvLFiKDV~g~~EIC~WsFyG~grk~aEVcCtSI 114 (190)
-|+.|+++||+...- .|.+.=..+-..++.++--...|
T Consensus 18 ~r~~g~vvfV~~alP-GE~V~v~i~~~~~~~~~a~~~ei 55 (60)
T d1uwva1 18 ARHNGKTLFIPGLLP-QENAEVTVTEDKKQYARAKVVRR 55 (60)
T ss_dssp EEETTEEEEEETCCT-TCEEEEEEEEECSSEEEEEEEEE
T ss_pred EEECCEEEEECCCCC-CCEEEEEEEEecCCeEEEEEEEE
Confidence 467899999998875 67777666665555554444443
No 8
>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.96 E-value=6.7 Score=27.67 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=26.1
Q ss_pred eeeEeeeeeEeecccceee---eeCC---ccccchhhhheecccc
Q psy34 106 IAEVCCTSIVYATDKKHTK---VEFP---EARIYEETLNIILYEA 144 (190)
Q Consensus 106 ~aEVcCtSIvYaTeKK~TK---VEFP---EARIyEEtLNiLlyE~ 144 (190)
..|=+|-||||+++-.-.+ +=-| +|+++=+.|.-|++.+
T Consensus 83 ~~e~~~ftIvyg~~~v~l~~l~lVA~s~~~a~~W~~gL~~L~~n~ 127 (131)
T d2zkmx3 83 SFLLKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKHP 127 (131)
T ss_dssp CGGGTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHCT
T ss_pred CccccEEEEEECCCcccceEEEEEeCCHHHHHHHHHHHHHHHhhH
Confidence 4455689999988864333 4344 6777778887777643
No 9
>d1iwga5 d.225.1.1 (A:182-273) Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains {Escherichia coli [TaxId: 562]}
Probab=27.04 E-value=5.5 Score=26.20 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=30.7
Q ss_pred ecCceeeecccCchhhhhhhhhhhhhcce--ecCeEEEEEecC
Q psy34 49 RHNNKYSYTSTSDDNLLKNIELFDKLALR--FSGRLLFIKDVI 89 (190)
Q Consensus 49 R~NNKYSYTs~SDDnlLKNiELFDKLslr--F~gRvLFiKDV~ 89 (190)
+.++++.|+-..+. .++++|=|..+-++ .+|..+++|||-
T Consensus 44 ~~~~~~~~~ir~~~-~~~s~~d~~~ivI~~~~~G~~VrL~DVA 85 (92)
T d1iwga5 44 VKGQQLNASIIAQT-RLTSTEEFGKILLKVNQDGSRVLLRDVA 85 (92)
T ss_dssp CTTCCCCEECCCCC-CCCSHHHHHTCEEEEETTTEEEEHHHHE
T ss_pred ccccceEEEEEecc-eecChhhheeeEEEECCCCCEEEEeeee
Confidence 45667777754443 47899999999996 468999999984
No 10
>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=23.45 E-value=20 Score=29.51 Aligned_cols=15 Identities=40% Similarity=0.483 Sum_probs=10.9
Q ss_pred HHHHHhcCCceEEEE
Q psy34 32 QLLLNATAKPVVKLL 46 (190)
Q Consensus 32 ~~Li~~s~kPvVKL~ 46 (190)
-+|-.+|-||+|||.
T Consensus 27 ~sL~dqslKPCVkLT 41 (316)
T d2nxya1 27 ISLWDQSLKPCVKLT 41 (316)
T ss_dssp HHHHHHHCCCSEEEE
T ss_pred HHhhhcccCcccccc
Confidence 456678888888864
No 11
>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}
Probab=22.63 E-value=65 Score=19.85 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=38.7
Q ss_pred HHHHHHhcCCceEEEEEeecCceeeecccCchhhhhhhhhhhhhcceecCeEEEEE-ecCCCCcee---------EeEee
Q psy34 31 EQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK-DVIGSSEIC---------CWSFF 100 (190)
Q Consensus 31 e~~Li~~s~kPvVKL~~NR~NNKYSYTs~SDDnlLKNiELFDKLslrF~gRvLFiK-DV~g~~EIC---------~WsFy 100 (190)
.+.+|..+.|||+-..|-- . -..=.+=...|++++-.|++++.|++ |+-...++| ..-||
T Consensus 9 f~~~v~~~~~~vlv~F~a~---------w-C~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~ 78 (104)
T d1fb6a_ 9 WKEFVLESEVPVMVDFWAP---------W-CGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFF 78 (104)
T ss_dssp HHHHTTTCSSCEEEEEECT---------T-CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHcCCCcEEEEEEcC---------c-cCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEEEEE
Confidence 4567777899987765532 1 11112223567888888988888886 444433343 34455
Q ss_pred eCceeee
Q psy34 101 GHGKKIA 107 (190)
Q Consensus 101 G~grk~a 107 (190)
-.|+++.
T Consensus 79 ~~G~~v~ 85 (104)
T d1fb6a_ 79 KNGERKE 85 (104)
T ss_dssp ETTEEEE
T ss_pred EcCeEEE
Confidence 5555443
No 12
>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}
Probab=20.59 E-value=29 Score=22.04 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=23.1
Q ss_pred eeChHHHHHHHHhcCCceEEEEEeecCcee
Q psy34 25 ITSLKEEQLLLNATAKPVVKLLINRHNNKY 54 (190)
Q Consensus 25 itS~~ee~~Li~~s~kPvVKL~~NR~NNKY 54 (190)
|++.++...++++.. ..|+|.+.|.+..+
T Consensus 57 v~~~~~~~~~l~~~~-~~v~l~v~R~~~~~ 85 (88)
T d1ky9b2 57 VKNIAELRKVLDSKP-SVLALNIQRGDSTI 85 (88)
T ss_dssp CSSHHHHHHHTTTCC-SCCCEEEESSSCEE
T ss_pred cCCHHHHHHHHHhCC-CEEEEEEEECCEEE
Confidence 378889999997654 45899999988765
No 13
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.40 E-value=68 Score=22.01 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=41.8
Q ss_pred eeeeeChHHHHHHHHhc-CCceEEEEEeecCceeeecccCchhhhhhhhhhhhhcceecCeEEEE-EecCCCCcee
Q psy34 22 VPLITSLKEEQLLLNAT-AKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFI-KDVIGSSEIC 95 (190)
Q Consensus 22 vp~itS~~ee~~Li~~s-~kPvVKL~~NR~NNKYSYTs~SDDnlLKNiELFDKLslrF~gRvLFi-KDV~g~~EIC 95 (190)
+|=+.|.+|-+.+|.+. .||||-..+. .....=.+=-..|++|+-.|.|.+.|+ =|+-...+++
T Consensus 4 l~~l~s~~~~dq~i~~~~~k~vvv~F~a----------~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la 69 (137)
T d1qgva_ 4 LPHLHNGWQVDQAILSEEDRVVVIRFGH----------DWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFN 69 (137)
T ss_dssp SCBCCSHHHHHHHHHTCSSSEEEEEEEC----------TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTT
T ss_pred ccccCCHHHHHHHHHhCCCCEEEEEEEC----------CCCccchhcChHHHHHHHHhhccceEEEeeccccchhh
Confidence 57788999998888665 5676654431 122222222367899999999988887 3776544544
Done!