RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy34
(190 letters)
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium
channel domain T1, pentameric assembly, HOST-virus
interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Length = 202
Score = 46.5 bits (110), Expect = 8e-07
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 1 LTDLCEQTIKRKQRETE--PICRVPLITSLKEEQL--LLNATAKPVVKLLINRHNNKYSY 56
L L + I+ + +T P+ V + +EE+L +++ + + + Y+Y
Sbjct: 102 LIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNY 161
Query: 57 TSTSDDNLL 65
+ L
Sbjct: 162 GNEDQAEFL 170
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.054
Identities = 36/208 (17%), Positives = 67/208 (32%), Gaps = 76/208 (36%)
Query: 25 ITSLKEEQLL-----LNATAKPVVKL---LINRHNN------------------KYSYTS 58
I++L +EQ+ N+ ++ L+N N K S
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 59 TSDDNLLKNIELFDKLALRFSGRLLFI-----------------KDVIGSSEICCWSFFG 101
D + I F + L+FS R L + KD++ ++ SF
Sbjct: 401 GLDQS---RIP-FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN----VSFNA 452
Query: 102 HGKKIAEVCCTSIVYAT-DKKHTKVEFPEARIYEETLNIILYEA--RNPPD-QELMQATS 157
+I VY T D R+ +++ + + R P + Q +
Sbjct: 453 KDIQIP-------VYDTFDGSDL-------RVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 158 T------RGAVAGMSSYTSDEEEERSGL 179
T G +G+ T ++ +G+
Sbjct: 499 THILDFGPGGASGLGVLTH-RNKDGTGV 525
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.69
Identities = 28/190 (14%), Positives = 56/190 (29%), Gaps = 60/190 (31%)
Query: 1 LTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKL---LINRHN--NKYS 55
+ L + ++ KQ + E +P I L L + L +++ +N +
Sbjct: 408 VNKLHKYSLVEKQPK-ESTISIPSI------YLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 56 YTSTSDDNL-----------LKNIELFDKLALRFSGRLL---FIKDVI---GSSEICCWS 98
L LKNIE +++ L F L F++ I ++ S
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-FRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 99 FFG-------HGKKIAEVC----------------CTSIVYATDKKHTKV-----EFPEA 130
+ I + + + K+T + +
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS--KYTDLLRIALMAEDE 577
Query: 131 RIYEETLNII 140
I+EE +
Sbjct: 578 AIFEEAHKQV 587
Score = 27.9 bits (61), Expect = 2.4
Identities = 3/28 (10%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 30 EEQLLLNATAKPVVKLLINRHNNKYSYT 57
+ +++N K L+ + + + +
Sbjct: 403 DVMVVVNKLHK---YSLVEKQPKESTIS 427
Score = 27.9 bits (61), Expect = 2.6
Identities = 24/167 (14%), Positives = 51/167 (30%), Gaps = 52/167 (31%)
Query: 1 LTDLCEQTIKRKQRETEPICRVPL-ITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTST 59
L L Q ++ + L I S++ E ++ L+ +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-----------LRRLLKSKPYENC---- 246
Query: 60 SDDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKI------AEVCCTS 113
LL + +V +++ W+ F KI +V T
Sbjct: 247 ----------------------LLVLLNV-QNAKA--WNAFNLSCKILLTTRFKQV--TD 279
Query: 114 IVYATDKKHTKVEFPEARIYE-ETLNIILYEARNPPDQEL-MQATST 158
+ A H ++ + E + +L + + Q+L + +T
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTT 325
>2ab5_A MRNA maturase; laglidadg endonuclease, group I intron splicing, RNA
binding, protein binding; 2.20A {Saccharomyces
cerevisiae}
Length = 269
Score = 28.5 bits (63), Expect = 1.2
Identities = 7/64 (10%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 27 SLKEEQLLLNATAK--PVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSG--RL 82
S+ ++ A + + N T+ S +++ + + ++ G +L
Sbjct: 185 SMNNNMEVMLAIKSYLKINNNIYMNEFNNSKMTTKSINDIKNVVMFINNNPIKLLGYKKL 244
Query: 83 LFIK 86
++
Sbjct: 245 QYLL 248
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 27.1 bits (60), Expect = 4.1
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 43 VKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIKDV 88
+ ++ N + NK S ++ +K +E A+RF G ++ I+D
Sbjct: 2018 ITVISNYYGNKTVLLSFLEEGFVKRLE----NAIRF-GSVVIIQDG 2058
>3qqy_A Ribosomal protein 3/homing endonuclease-like PROT fusion;
protein-DNA comlex, laglidadg family, hydrolase, DNA
binding mitochondrion, hydrolase-DNA complex; HET: DNA;
2.40A {Ophiostoma novo-ulmi subsp}
Length = 307
Score = 26.7 bits (58), Expect = 5.9
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 47 INRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK 86
N +N S T ++L I+ F+K L ++
Sbjct: 74 ANSGDNAVSLKVTRFEDLKVIIDHFEKYPLITQKLGDYML 113
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP:
c.78.2.1 c.78.2.1 PDB: 1b74_A*
Length = 254
Score = 25.9 bits (58), Expect = 7.2
Identities = 6/52 (11%), Positives = 13/52 (25%), Gaps = 6/52 (11%)
Query: 37 ATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIKDV 88
A + + + + ++ T L GR +K
Sbjct: 203 ALSLSLHNFIKDDGSSSLELFFTDLS------PNLQFLIKLILGRDYPVKLA 248
>2qoj_Z Intron-encoded DNA endonuclease I-ANII; laglidadg homing
endonuclease, hydrolase, intron homing, mitochondrion,
mRNA processing, mRNA splicing; 2.40A {Emericella
nidulans} PDB: 1p8k_Z 3eh8_A 3uvf_A
Length = 254
Score = 26.1 bits (57), Expect = 7.7
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 46 LINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSG 80
+ N TS ++ I+ ++ G
Sbjct: 191 VYLDKTNCSKLKVTSVRSVENIIKFLQNAPVKLLG 225
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP}
SCOP: b.86.1.2
Length = 158
Score = 25.6 bits (55), Expect = 8.7
Identities = 10/59 (16%), Positives = 22/59 (37%)
Query: 80 GRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKVEFPEARIYEETLN 138
G+ + IKD++ + W+ K+ + + K ++ R + T N
Sbjct: 16 GKRVSIKDLLDEKDFEIWAINEQTMKLESAKVSRVFMTGKKLVYILKTRLGRTIKATAN 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.374
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,745,228
Number of extensions: 154138
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 13
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.1 bits)