RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy34
         (190 letters)



>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima
           [TaxId: 2336]}
          Length = 210

 Score = 28.8 bits (64), Expect = 0.28
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 7/97 (7%)

Query: 49  RHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIKDVI---GSSEICCWSFFGHGKK 105
            + +        D   L+ +E + KL      + +F+ D +   G S I           
Sbjct: 94  PNASVGHIGIYRDPETLQAVEYYAKLPPLNDDKEVFLLDPMLATGVSSIKAIEILKENGA 153

Query: 106 IAEVCCTSIVYATDKKHTKVEFPEARIY----EETLN 138
                   I      +  + ++ + +IY    +E LN
Sbjct: 154 KKITLVALIAAPEGVEAVEKKYEDVKIYVAALDERLN 190


>d1mi8a_ b.86.1.2 (A:) DnaB intein {Synechocystis sp. pcc 6803
           [TaxId: 1148]}
          Length = 158

 Score = 27.5 bits (60), Expect = 0.81
 Identities = 10/63 (15%), Positives = 22/63 (34%)

Query: 80  GRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKVEFPEARIYEETLNI 139
           G+ + IKD++   +   W+      K+     + +     K    ++    R  + T N 
Sbjct: 16  GKRVSIKDLLDEKDFEIWAINEQTMKLESAKVSRVFMTGKKLVYILKTRLGRTIKATANH 75

Query: 140 ILY 142
              
Sbjct: 76  RFL 78


>d1p8kz2 d.95.2.1 (Z:126-254) DNA endonuclease I-AniI {Aspergillus
           nidulans [TaxId: 162425]}
          Length = 129

 Score = 24.1 bits (52), Expect = 8.0
 Identities = 6/57 (10%), Positives = 14/57 (24%), Gaps = 1/57 (1%)

Query: 25  ITSLKEEQLLLNATAKPVVKLLINRHNNK-YSYTSTSDDNLLKNIELFDKLALRFSG 80
           I     + L+            +            TS  ++   I+      ++  G
Sbjct: 44  IAQRDGDILISAIRKYLSFTTKVYLDKTNCSKLKVTSVRSVENIIKFLQNAPVKLLG 100


>d2uubc2 d.53.1.1 (C:107-207) Ribosomal protein S3 C-terminal domain
           {Thermus thermophilus [TaxId: 274]}
          Length = 101

 Score = 23.7 bits (51), Expect = 9.1
 Identities = 7/40 (17%), Positives = 12/40 (30%)

Query: 85  IKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTK 124
           +   IG +E     +   G+        +I Y      T 
Sbjct: 47  VSGRIGGAEQARTEWAAQGRVPLHTLRANIDYGFALARTT 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 666,297
Number of extensions: 29142
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 6
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)