BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy340
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVP--GKRVGYMPQEIALYGE 80
++GASGCGKTTLL C+ G + ++GEI + G +K + +P +R+GY+ QE L+
Sbjct: 35 IIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPH 94
Query: 81 FSIKETMMY 89
++ + Y
Sbjct: 95 LTVYRNIAY 103
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALYGE 80
GLLG SG GKTT+L I G R G++W+ GGK T P KR VG + Q AL+
Sbjct: 45 GLLGPSGSGKTTILRLIAGLERPTKGDVWI-GGKRVTDLP--PQKRNVGLVFQNYALFQH 101
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS 116
++ + + + + E+D R++ LL F+ L S
Sbjct: 102 MTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES 137
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFS 82
+G SGCGK+TLL I G + +G++++ G+ + + VG + Q ALY S
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITSGDLFI--GEKRMNDTPPAERGVGMVFQSYALYPHLS 91
Query: 83 IKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
+ E M + + G + I+ R+ + L L
Sbjct: 92 VAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 123
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFS 82
+G SGCGK+TLL I G + +G++++ G+ + + VG + Q ALY S
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITSGDLFI--GEKRMNDTPPAERGVGMVFQSYALYPHLS 91
Query: 83 IKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
+ E M + + G + I+ R+ + L L
Sbjct: 92 VAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 123
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFS 82
+G SGCGK+TLL I G + +G++++ G+ + + VG + Q ALY S
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITSGDLFI--GEKRMNDTPPAERGVGMVFQSYALYPHLS 91
Query: 83 IKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
+ E M + + G + I+ R+ + L L
Sbjct: 92 VAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 123
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWV---LGGKPGTKGSGVPGKR--VGYMPQEIAL 77
LLG SGCGKTT L I G G+I++ L P KG VP K V + Q AL
Sbjct: 37 LLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADP-EKGVFVPPKERDVAXVFQSYAL 95
Query: 78 YGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
Y ++ + + + + + EID R++ + L L
Sbjct: 96 YPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGL 132
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWV---LGGKPGTKGSGVPGK--RVGYMPQEIAL 77
LLG SGCGKTT L I G + G+I++ L P KG VP K + + Q AL
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADP-EKGIFVPPKDRDIAMVFQSYAL 92
Query: 78 YGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
Y ++ + + + + + EID R++ + L L
Sbjct: 93 YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL 129
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGV---PGKRVGYMPQEIAL 77
+G+LG SG GKTT + I G +TGE++ + G + +++G + Q AL
Sbjct: 34 FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93
Query: 78 YGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
Y + E + + M EI R++ + LD+
Sbjct: 94 YPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI 130
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGV---PGKRVGYMPQEIAL 77
+G+LG SG GKTT + I G +TGE++ + G + +++G + Q AL
Sbjct: 34 FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93
Query: 78 YGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
Y + E + + M EI R++ + LD+
Sbjct: 94 YPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI 130
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
Length = 240
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR--VGYMPQEIALYGE 80
LLG +G GK+ L I G + + GE+ + G + +P +R +G++PQ+ AL+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRL----NGADITPLPPERRGIGFVPQDYALFPH 84
Query: 81 FSIKETMMY 89
S+ + Y
Sbjct: 85 LSVYRNIAY 93
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGK--RVGYMPQEIALYG 79
LLG SGCGKTT L + G + +GEI+ + +P K VG + Q ALY
Sbjct: 33 ALLGPSGCGKTTTLLMLAGIYKPTSGEIYF----DDVLVNDIPPKYREVGMVFQNYALYP 88
Query: 80 EFSIKETMMY 89
++ E + +
Sbjct: 89 HMTVFENIAF 98
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 25 GASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIK 84
G +G GKTTLL I + GEI + G P TK G ++ ++P+EI + + S++
Sbjct: 42 GPNGIGKTTLLKTISTYLKPLKGEI-IYNGVPITKVKG----KIFFLPEEIIVPRKISVE 96
Query: 85 ETMMYFGWIFGMET--PEIDDRLQFLLNFLDLPSQ 117
+ + ++G++ EI D L+ + LDL +
Sbjct: 97 DYLKAVASLYGVKVNKNEIMDALES-VEVLDLKKK 130
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALYGEF 81
L+GA+G GKTT LS I G R G+I G K + V + + +P+ ++ E
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRRIFPEL 96
Query: 82 SIKETMMY--------------FGWIFGMETPEIDDRLQFL 108
++ E + WIF + P + +RL+ L
Sbjct: 97 TVYENLXXGAYNRKDKEGIKRDLEWIFSL-FPRLKERLKQL 136
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALYG 79
+ +LG +G GKT L I G ++G I +L GK T S P K + ++ Q +L+
Sbjct: 29 FVILGPTGAGKTLFLELIAGFHVPDSGRI-LLDGKDVTDLS--PEKHDIAFVYQNYSLFP 85
Query: 80 EFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPSQSRLVKN 123
++K+ + FGM +I D + L DL + L +N
Sbjct: 86 HMNVKKNLE-----FGMRMKKIKDPKRVLDTARDLKIEHLLDRN 124
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
+GL+G +G GKTT L I + ++G + V G + V K + Y+P+E Y
Sbjct: 44 FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR-KLISYLPEEAGAYRN 102
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQ 106
E + + + + EI++ ++
Sbjct: 103 MQGIEYLRFVAGFYASSSSEIEEMVE 128
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGK--RVGYMPQEIALYGE 80
LLG SGCGKTT L I G G I+ G + T +P K + + Q A++
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEEPTEGRIY-FGDRDVTY---LPPKDRNISMVFQSYAVWPH 97
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
++ E + + I EID R+++ L +
Sbjct: 98 MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI 131
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGK--RVGYMPQEIALYGE 80
LLG SGCGKTT L I G G I+ G + T +P K + + Q A++
Sbjct: 43 LLGPSGCGKTTTLRMIAGLEEPTEGRIY-FGDRDVTY---LPPKDRNISMVFQSYAVWPH 98
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
++ E + + I EID R+++ L +
Sbjct: 99 MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI 132
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT 58
YG++GASG GK+TL+ C+ R G + V G + T
Sbjct: 57 YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 94
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT 58
YG++GASG GK+TL+ C+ R G + V G + T
Sbjct: 34 YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 71
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT 58
YG++GASG GK+TL+ C+ R G + V G + T
Sbjct: 57 YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 94
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGK--RVGYMPQEIALYG 79
LLG SG GK+TLL I G + +G+I+ K T+ +P K VG + Q ALY
Sbjct: 33 ALLGPSGSGKSTLLYTIAGIYKPTSGKIY-FDEKDVTE---LPPKDRNVGLVFQNWALYP 88
Query: 80 EFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
++ + + + + EID +++ + L +
Sbjct: 89 HMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI 123
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 32.0 bits (71), Expect = 0.100, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNT-GEIWVLGGKPGTKGSGVPGKRVGYMPQEIALY 78
GLLG +G GK+TLLS + R LNT GEI + G + K G +PQ++ ++
Sbjct: 51 GLLGRTGSGKSTLLSAFL--RLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIF 106
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative
Metal-Chelate Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative
Metal-Chelate Type Abc Transporter
Length = 253
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 13/52 (25%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73
+LG +GCGK+TLL ++G R G+I V + +G++PQ
Sbjct: 35 AVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY-------------QSIGFVPQ 73
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNT--GEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYG 79
L+G SGCGK+T+++ + R +T GEI++ G + T ++ + QE L+
Sbjct: 1109 ALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF- 1165
Query: 80 EFSIKETMMY 89
+ SI E ++Y
Sbjct: 1166 DCSIAENIIY 1175
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALY 78
L+G+SGCGK+T++S ++ + G+I + G K V + QE AL+
Sbjct: 448 ALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALF 504
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 39 VGRRRLNTGEIWVLGGKPGTKG 60
G R+LN+GE W + +PGTKG
Sbjct: 26 AGGRQLNSGESWTINVEPGTKG 47
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet
Protein Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet
Protein Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray
Dose On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage
Experiment At 300 K
Length = 207
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 39 VGRRRLNTGEIWVLGGKPGTKG 60
G R+LN+GE W + +PGTKG
Sbjct: 26 AGGRQLNSGESWTINVEPGTKG 47
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 42 RRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMM-YFGWIFGMETPE 100
R + TG++ + K V G + QEI + ++S + Y+G P
Sbjct: 44 RHVKTGQLAAI------KVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPG 97
Query: 101 IDDRLQFLLNFLDLPSQSRLVKNLR 125
+DD+L ++ F S + L+KN +
Sbjct: 98 MDDQLWLVMEFCGAGSVTDLIKNTK 122
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA--LY 78
Y ++G +G GKTTLL + G GEI+ L G P + K VGY+ Q + +
Sbjct: 40 YVVVGKNGSGKTTLLKILAGLLAA-AGEIF-LDGSPAD--PFLLRKNVGYVFQNPSSQII 95
Query: 79 GEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
G +++E + + I G++ E+ R++ +L + L
Sbjct: 96 GA-TVEEDVAFSLEIMGLDESEMRKRIKKVLELVGL 130
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
++G GCGK++LLS ++ E+ + G KGS V Y+PQ+ + +
Sbjct: 35 AVVGQVGCGKSSLLSALL-------AEMDKVEGHVAIKGS------VAYVPQQAWIQND- 80
Query: 82 SIKETMMY 89
S++E +++
Sbjct: 81 SLRENILF 88
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR--VGYMPQEIALYGE 80
++G SG GK+T L C+ + GEI + G K + + R VG + Q L+
Sbjct: 34 VIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 93
Query: 81 FSI 83
++
Sbjct: 94 MTV 96
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR--VGYMPQEIALYGE 80
++G SG GK+T L C+ + GEI + G K + + R VG + Q L+
Sbjct: 55 VIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 114
Query: 81 FSI 83
++
Sbjct: 115 MTV 117
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTG 47
GL+G +G GK+T L + G+++ N G
Sbjct: 107 GLVGTNGIGKSTALKILAGKQKPNLG 132
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 29/103 (28%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFS 82
++G +G GKTTL+ + G + + G+ +P V PQ+IA +
Sbjct: 383 MMGENGTGKTTLIKLLAGALKPDEGQ-------------DIPKLNVSMKPQKIAPKFPGT 429
Query: 83 IKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPSQSRLVKNLR 125
+++ ++F I G FL+ Q+ +VK LR
Sbjct: 430 VRQ--LFFKKIRG--------------QFLNPQFQTDVVKPLR 456
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 21 YGLLGASGCGKTTLLSCI 38
YG+ G +GCGK+TL+ I
Sbjct: 464 YGICGPNGCGKSTLMRAI 481
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
++G +G GK+TL++ + G +GE++ R+ Y+ Q + E
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTH-----------ENCRIAYIKQHAFAHIES 751
Query: 82 SIKET-MMYFGWIFGM-ETPEIDDRLQFLLNFLDLPSQSRLVK 122
+ +T Y W F E E DR +N D + +++ K
Sbjct: 752 HLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFK 794
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
L+G SG GK+T+L + +++G I + G +G +PQ+ L+ +
Sbjct: 84 ALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND- 142
Query: 82 SIKETMMY 89
+I + + Y
Sbjct: 143 TIADNIRY 150
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet
Protein Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I
At 1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion
After 1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best
Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion
After 1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best
Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion
After 1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst
Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion
After 1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst
Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion
After 18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best
Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion
After 18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst
Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion
After 18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best
Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion
After 18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst
Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion
After 9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best
Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion
After 9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst
Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive
Sonicc Imaging Laser Dose
Length = 207
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 39 VGRRRLNTGEIWVLGGKPGTKG 60
G R+LN+GE W + +PGT G
Sbjct: 26 AGGRQLNSGESWTINVEPGTNG 47
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified
Thaumatin I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified
Thaumatin I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified
Thaumatin I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified
Thaumatin I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified
Thaumatin I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified
Thaumatin I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified
Thaumatin I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 39 VGRRRLNTGEIWVLGGKPGTKG 60
G R+LN+GE W + +PGT G
Sbjct: 26 AGGRQLNSGESWTINVEPGTNG 47
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified
Thaumatin I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without
Tartrate At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 39 VGRRRLNTGEIWVLGGKPGTKG 60
G R+LN+GE W + +PGT G
Sbjct: 26 AGGRQLNSGESWTINVEPGTNG 47
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 39 VGRRRLNTGEIWVLGGKPGTKG 60
G R+LN+GE W + +PGT G
Sbjct: 26 AGGRQLNSGESWTINVEPGTNG 47
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 39 VGRRRLNTGEIWVLGGKPGTKG 60
G R+LN+GE W + +PGT G
Sbjct: 26 AGGRQLNSGESWTINVEPGTNG 47
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
++G +G GK+TL++ + G +GE++ R+ Y+ Q + E
Sbjct: 697 AVIGPNGAGKSTLINVLTGELLPTSGEVYTH-----------ENCRIAYIKQHAFAHIES 745
Query: 82 SIKET-MMYFGWIFGM-ETPEIDDRLQFLLNFLDLPSQSRLVK 122
+ +T Y W F E E DR +N D + +++ K
Sbjct: 746 HLDKTPSEYIQWRFQTGEDRETXDRANRQINENDAEAXNKIFK 788
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 21 YGLLGASGCGKTTLLSCI 38
YG+ G +GCGK+TL I
Sbjct: 458 YGICGPNGCGKSTLXRAI 475
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
++G +G GK+TL++ + G +GE++ R+ Y+ Q + E
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTH-----------ENCRIAYIKQHAFAHIES 751
Query: 82 SIKET-MMYFGWIFGM-ETPEIDDRLQFLLNFLDLPSQSRLVK 122
+ +T Y W F E E DR +N D + +++ K
Sbjct: 752 HLDKTPSEYIQWRFQTGEDRETXDRANRQINENDAEAXNKIFK 794
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 21 YGLLGASGCGKTTLLSCI 38
YG+ G +GCGK+TL I
Sbjct: 464 YGICGPNGCGKSTLXRAI 481
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
++G +G GK+TLL + G + GE +LG + + M Q L F
Sbjct: 41 AIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100
Query: 82 SIKETM 87
S+ E +
Sbjct: 101 SVSEVI 106
>pdb|2IYK|A Chain A, Crystal Structure Of The Upf2-Interacting Domain Of
Nonsense Mediated Mrna Decay Factor Upf1
pdb|2IYK|B Chain B, Crystal Structure Of The Upf2-Interacting Domain Of
Nonsense Mediated Mrna Decay Factor Upf1
Length = 162
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 36 SCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95
+C+V NT + W G+ T GS + V +E+ L+ + + ET+
Sbjct: 22 ACVV---YCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV-------- 70
Query: 96 METPEIDDRLQFLLNFLDLPSQSRLV 121
+E R FLL F+ + S +V
Sbjct: 71 LECYNCGCRNVFLLGFIPAKADSVVV 96
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 26/95 (27%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRV-GYMPQEI----- 75
G+LG +G GKTT R+ GEI +GS P K++ Y PQ I
Sbjct: 298 GILGPNGIGKTTF-------ARILVGEI------TADEGSVTPEKQILSYKPQRIFPNYD 344
Query: 76 ---ALYGEFSIKETMMYFGWIFGMETPEIDDRLQF 107
Y E + K+ + W F E+ RL
Sbjct: 345 GTVQQYLENASKDALSTSSWFF----EEVTKRLNL 375
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGE 48
G+LG +G GKTT+L + G N G+
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFGD 55
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR--VGYMPQEI 75
L G +G GKTTLL+ + +G + + G PG G R +G++ +
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSL 106
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQE--IALYGE 80
L SGCGKTT+ + ++ +++ N + + + KG GK ++ +E + L
Sbjct: 32 LSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK-EGKDYYFVDREEFLRLCSN 90
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQ 106
I E FG +G+ ++D +
Sbjct: 91 GEIIEHAEVFGNFYGVPRKNLEDNVD 116
>pdb|1LZL|A Chain A, Bacterial Heroin Esterase
Length = 323
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 96 METPEIDDRLQF--LLNFLDLP 115
+E PE+DDRL+ + NF+D P
Sbjct: 186 LEIPELDDRLETVSMTNFVDTP 207
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
+G SG GK+TL++ I + +G+I + G +G ++G + Q+ L+ +
Sbjct: 371 AFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429
Query: 82 SIKETMM 88
++KE ++
Sbjct: 430 TVKENIL 436
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIW 50
++G +G GK+TL++ I G + + G ++
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVY 65
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 38 IVGRRRLNTGEIWVLGGKPGTK 59
I G RRLN G+ WV+ GTK
Sbjct: 20 IGGGRRLNRGQTWVINAPRGTK 41
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIW 50
++G +G GK+TL++ I G + + G ++
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVY 65
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIW 50
++G +G GK+TL++ I G + + G ++
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVY 65
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 36 SCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95
+C+V NT + W G+ T GS + V +E+ L+ + + ET+
Sbjct: 18 ACVV---YCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV-------- 66
Query: 96 METPEIDDRLQFLLNFLDLPSQSRLV 121
+E R FLL F+ + S +V
Sbjct: 67 LECYNCGCRNVFLLGFIPAKADSVVV 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.144 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,490,389
Number of Sequences: 62578
Number of extensions: 142584
Number of successful extensions: 493
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 75
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)