Query psy340
Match_columns 125
No_of_seqs 161 out of 1237
Neff 8.4
Searched_HMMs 46136
Date Sat Aug 17 00:02:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3839 MalK ABC-type sugar tr 100.0 2.7E-31 5.9E-36 200.7 11.0 109 14-124 25-134 (338)
2 COG3842 PotA ABC-type spermidi 100.0 2.7E-30 5.9E-35 196.1 10.6 108 15-124 28-137 (352)
3 COG1126 GlnQ ABC-type polar am 100.0 3.2E-30 7E-35 183.2 7.5 111 14-124 24-137 (240)
4 COG1125 OpuBA ABC-type proline 100.0 4.2E-30 9E-35 186.6 8.0 124 1-124 1-136 (309)
5 COG1116 TauB ABC-type nitrate/ 100.0 9.1E-29 2E-33 179.0 9.9 105 15-124 26-131 (248)
6 COG1135 AbcC ABC-type metal io 100.0 1.5E-28 3.3E-33 182.3 8.6 109 16-124 30-142 (339)
7 COG1136 SalX ABC-type antimicr 100.0 5.3E-28 1.1E-32 174.1 10.8 110 15-124 28-143 (226)
8 COG1120 FepC ABC-type cobalami 100.0 1.2E-28 2.7E-33 180.3 5.9 124 1-124 2-139 (258)
9 COG1131 CcmA ABC-type multidru 99.9 9.7E-28 2.1E-32 179.4 10.5 122 2-124 5-137 (293)
10 COG1118 CysA ABC-type sulfate/ 99.9 1.8E-27 3.9E-32 176.4 8.9 111 12-124 22-138 (345)
11 COG2884 FtsE Predicted ATPase 99.9 3.8E-27 8.3E-32 164.8 9.6 110 15-124 25-138 (223)
12 PRK11650 ugpC glycerol-3-phosp 99.9 6.7E-27 1.4E-31 179.0 10.7 121 2-124 4-135 (356)
13 PRK11432 fbpC ferric transport 99.9 1E-26 2.2E-31 177.7 11.2 121 2-124 7-137 (351)
14 TIGR03265 PhnT2 putative 2-ami 99.9 1.4E-26 3E-31 177.0 11.2 107 16-124 28-135 (353)
15 TIGR02314 ABC_MetN D-methionin 99.9 2.8E-26 6.2E-31 174.7 11.1 124 1-124 1-141 (343)
16 PRK13537 nodulation ABC transp 99.9 2.2E-26 4.7E-31 173.0 10.2 122 2-124 8-139 (306)
17 PRK11607 potG putrescine trans 99.9 4.4E-26 9.5E-31 175.6 11.2 107 16-124 43-150 (377)
18 PRK09452 potA putrescine/sperm 99.9 4.4E-26 9.6E-31 175.5 10.9 107 16-124 38-145 (375)
19 COG1137 YhbG ABC-type (unclass 99.9 1.3E-27 2.9E-32 168.4 2.2 119 2-120 5-136 (243)
20 TIGR01186 proV glycine betaine 99.9 6.4E-26 1.4E-30 173.9 11.4 110 15-124 16-130 (363)
21 COG3638 ABC-type phosphate/pho 99.9 2.2E-26 4.7E-31 165.5 8.2 124 1-124 3-148 (258)
22 COG1127 Ttg2A ABC-type transpo 99.9 2.9E-26 6.3E-31 165.2 8.6 109 16-124 32-146 (263)
23 PRK13536 nodulation factor exp 99.9 8.7E-26 1.9E-30 172.0 10.9 122 2-124 42-173 (340)
24 TIGR00960 3a0501s02 Type II (G 99.9 7.6E-26 1.6E-30 161.9 9.4 124 1-124 1-139 (216)
25 cd03266 ABC_NatA_sodium_export 99.9 1.2E-25 2.5E-30 161.0 10.2 123 1-124 1-137 (218)
26 COG4555 NatA ABC-type Na+ tran 99.9 4.5E-26 9.6E-31 160.9 7.3 108 16-124 26-134 (245)
27 PRK11000 maltose/maltodextrin 99.9 2.1E-25 4.5E-30 171.5 11.3 121 2-124 4-134 (369)
28 PRK11153 metN DL-methionine tr 99.9 1.9E-25 4.1E-30 170.3 10.8 124 1-124 1-141 (343)
29 TIGR03258 PhnT 2-aminoethylpho 99.9 2.8E-25 6.2E-30 170.3 11.8 108 15-124 28-138 (362)
30 cd03258 ABC_MetN_methionine_tr 99.9 2.5E-25 5.4E-30 160.9 10.4 124 1-124 1-141 (233)
31 TIGR01188 drrA daunorubicin re 99.9 2E-25 4.3E-30 167.4 10.2 110 14-124 15-125 (302)
32 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.7E-25 5.9E-30 159.1 10.5 109 16-124 28-141 (218)
33 cd03265 ABC_DrrA DrrA is the A 99.9 3.3E-25 7.1E-30 159.1 10.6 108 16-124 24-132 (220)
34 cd03261 ABC_Org_Solvent_Resist 99.9 3.6E-25 7.7E-30 160.3 10.8 110 15-124 23-137 (235)
35 COG4152 ABC-type uncharacteriz 99.9 1.6E-25 3.5E-30 162.0 8.6 106 15-124 25-131 (300)
36 TIGR02673 FtsE cell division A 99.9 3.7E-25 8.1E-30 158.0 10.5 124 1-124 1-138 (214)
37 TIGR03522 GldA_ABC_ATP gliding 99.9 3E-25 6.5E-30 166.4 10.2 108 16-124 26-134 (301)
38 TIGR01288 nodI ATP-binding ABC 99.9 3.9E-25 8.4E-30 165.9 10.5 122 2-124 5-136 (303)
39 PRK10908 cell division protein 99.9 4.2E-25 9.1E-30 158.7 10.2 124 1-124 1-138 (222)
40 cd03259 ABC_Carb_Solutes_like 99.9 7.5E-25 1.6E-29 156.4 11.4 108 15-124 23-131 (213)
41 cd03263 ABC_subfamily_A The AB 99.9 4.8E-25 1E-29 158.1 10.4 109 15-124 25-134 (220)
42 PRK10851 sulfate/thiosulfate t 99.9 7.6E-25 1.6E-29 167.5 11.4 107 16-124 26-137 (353)
43 COG1117 PstB ABC-type phosphat 99.9 3.6E-25 7.8E-30 157.4 8.6 106 10-116 25-137 (253)
44 cd03269 ABC_putative_ATPase Th 99.9 9.1E-25 2E-29 155.7 10.3 104 16-123 24-128 (210)
45 PRK11629 lolD lipoprotein tran 99.9 1.3E-24 2.8E-29 157.3 11.2 109 16-124 33-146 (233)
46 cd03301 ABC_MalK_N The N-termi 99.9 1.9E-24 4.2E-29 154.2 11.5 108 15-124 23-131 (213)
47 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.7E-24 3.8E-29 156.9 11.3 122 1-123 1-132 (236)
48 cd03295 ABC_OpuCA_Osmoprotecti 99.9 2E-24 4.3E-29 157.1 11.5 110 15-124 24-136 (242)
49 cd03293 ABC_NrtD_SsuB_transpor 99.9 2.2E-24 4.9E-29 154.8 11.5 103 16-123 28-131 (220)
50 PRK11248 tauB taurine transpor 99.9 2.3E-24 5.1E-29 158.2 11.7 119 1-124 1-129 (255)
51 COG0411 LivG ABC-type branched 99.9 2.2E-25 4.9E-30 160.8 6.0 109 16-124 28-150 (250)
52 cd03218 ABC_YhbG The ABC trans 99.9 1.9E-24 4.1E-29 156.0 10.8 109 15-123 23-133 (232)
53 cd03296 ABC_CysA_sulfate_impor 99.9 2.2E-24 4.8E-29 156.6 11.1 121 2-124 3-137 (239)
54 PRK10070 glycine betaine trans 99.9 1.9E-24 4.1E-29 167.6 11.4 110 15-124 51-165 (400)
55 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.4E-24 3E-29 158.6 9.9 107 15-124 27-140 (254)
56 cd03264 ABC_drug_resistance_li 99.9 1.7E-24 3.6E-29 154.5 9.5 106 16-123 24-130 (211)
57 cd03292 ABC_FtsE_transporter F 99.9 2.4E-24 5.1E-29 153.8 10.2 108 16-123 25-136 (214)
58 cd03294 ABC_Pro_Gly_Bertaine T 99.9 4.1E-24 8.9E-29 157.9 11.8 109 16-124 48-161 (269)
59 TIGR02211 LolD_lipo_ex lipopro 99.9 3.2E-24 6.8E-29 153.9 10.4 109 16-124 29-142 (221)
60 TIGR03608 L_ocin_972_ABC putat 99.9 3E-24 6.4E-29 152.5 10.1 109 15-123 21-134 (206)
61 TIGR01166 cbiO cobalt transpor 99.9 4E-24 8.7E-29 150.4 10.5 111 14-124 14-128 (190)
62 cd03219 ABC_Mj1267_LivG_branch 99.9 4E-24 8.6E-29 154.7 10.7 110 15-124 23-144 (236)
63 COG3840 ThiQ ABC-type thiamine 99.9 7.4E-25 1.6E-29 152.8 6.5 109 14-124 21-130 (231)
64 PRK10584 putative ABC transpor 99.9 4.5E-24 9.6E-29 153.9 10.7 109 16-124 34-147 (228)
65 PRK09493 glnQ glutamine ABC tr 99.9 2.9E-24 6.2E-29 156.0 9.7 123 1-123 1-136 (240)
66 cd03225 ABC_cobalt_CbiO_domain 99.9 2.7E-24 5.9E-29 153.3 9.5 110 15-124 24-135 (211)
67 COG4525 TauB ABC-type taurine 99.9 4.5E-24 9.7E-29 150.5 10.2 103 14-121 27-130 (259)
68 cd03262 ABC_HisP_GlnQ_permease 99.9 2.7E-24 5.8E-29 153.4 9.3 109 16-124 24-136 (213)
69 PRK09536 btuD corrinoid ABC tr 99.9 1.8E-24 3.9E-29 167.8 8.9 124 1-124 3-140 (402)
70 PRK13632 cbiO cobalt transport 99.9 3E-24 6.5E-29 158.8 9.3 123 1-123 7-142 (271)
71 COG4175 ProV ABC-type proline/ 99.9 5.9E-25 1.3E-29 163.8 5.5 109 16-124 52-165 (386)
72 COG1122 CbiO ABC-type cobalt t 99.9 4.2E-24 9.2E-29 155.3 9.9 112 13-124 25-139 (235)
73 TIGR01277 thiQ thiamine ABC tr 99.9 6.6E-24 1.4E-28 151.8 10.7 108 15-124 21-129 (213)
74 PRK13548 hmuV hemin importer A 99.9 2.8E-24 6.1E-29 157.9 9.0 123 2-124 3-135 (258)
75 PRK13640 cbiO cobalt transport 99.9 2.5E-24 5.4E-29 160.1 8.3 124 1-124 5-144 (282)
76 PRK13650 cbiO cobalt transport 99.9 3.5E-24 7.5E-29 159.1 8.9 109 16-124 31-141 (279)
77 PRK11831 putative ABC transpor 99.9 8.3E-24 1.8E-28 156.2 10.8 109 16-124 31-144 (269)
78 TIGR03415 ABC_choXWV_ATP choli 99.9 7.6E-24 1.6E-28 163.3 11.0 110 15-124 47-165 (382)
79 PRK10895 lipopolysaccharide AB 99.9 5.1E-24 1.1E-28 154.8 9.2 122 2-123 4-137 (241)
80 PRK13647 cbiO cobalt transport 99.9 6.8E-24 1.5E-28 157.2 9.7 123 2-124 5-139 (274)
81 cd03268 ABC_BcrA_bacitracin_re 99.9 8.1E-24 1.8E-28 150.6 9.6 103 16-124 24-127 (208)
82 PRK11264 putative amino-acid A 99.9 1.4E-23 3.1E-28 153.1 10.8 123 1-123 3-144 (250)
83 PRK13635 cbiO cobalt transport 99.9 7.5E-24 1.6E-28 157.4 9.5 122 2-123 6-140 (279)
84 PRK13538 cytochrome c biogenes 99.9 8.8E-24 1.9E-28 150.3 9.5 119 1-123 1-129 (204)
85 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.1E-23 2.4E-28 150.2 9.8 108 14-123 20-128 (211)
86 COG1124 DppF ABC-type dipeptid 99.9 1.1E-23 2.4E-28 152.0 9.8 122 1-124 3-142 (252)
87 cd03224 ABC_TM1139_LivF_branch 99.9 8.2E-24 1.8E-28 151.7 9.0 100 15-116 23-124 (222)
88 TIGR02315 ABC_phnC phosphonate 99.9 4.9E-24 1.1E-28 154.8 8.0 123 1-123 1-145 (243)
89 TIGR00972 3a0107s01c2 phosphat 99.9 1.5E-23 3.1E-28 153.0 10.3 114 1-115 1-131 (247)
90 PRK13637 cbiO cobalt transport 99.9 2E-23 4.4E-28 155.6 11.3 109 16-124 31-145 (287)
91 PRK13644 cbiO cobalt transport 99.9 9E-24 2E-28 156.5 9.2 124 1-124 1-137 (274)
92 TIGR03411 urea_trans_UrtD urea 99.9 1.6E-23 3.4E-28 152.2 10.2 124 1-124 2-144 (242)
93 cd03260 ABC_PstB_phosphate_tra 99.9 7.9E-24 1.7E-28 152.5 8.4 100 16-116 24-131 (227)
94 PRK10771 thiQ thiamine transpo 99.9 1.4E-23 3E-28 151.8 9.4 121 1-123 1-129 (232)
95 PRK13652 cbiO cobalt transport 99.9 1.5E-23 3.2E-28 155.6 9.6 123 2-124 4-138 (277)
96 PRK14247 phosphate ABC transpo 99.9 2.4E-23 5.2E-28 152.0 10.5 114 2-115 4-133 (250)
97 cd03256 ABC_PhnC_transporter A 99.9 1.3E-23 2.7E-28 152.4 8.9 109 15-123 24-144 (241)
98 TIGR02142 modC_ABC molybdenum 99.9 3.4E-23 7.3E-28 158.5 11.6 109 14-124 19-132 (354)
99 PRK11124 artP arginine transpo 99.9 1.4E-23 3.1E-28 152.5 9.1 108 16-123 26-141 (242)
100 PRK13638 cbiO cobalt transport 99.9 2.2E-23 4.8E-28 154.1 9.5 123 1-123 1-136 (271)
101 PRK14267 phosphate ABC transpo 99.9 3.6E-23 7.8E-28 151.3 10.3 114 2-115 5-136 (253)
102 COG0410 LivF ABC-type branched 99.9 1.3E-23 2.7E-28 150.7 7.7 80 15-94 26-106 (237)
103 cd03267 ABC_NatA_like Similar 99.9 1E-22 2.2E-27 147.9 11.9 108 16-124 45-154 (236)
104 TIGR02982 heterocyst_DevA ABC 99.9 5.3E-23 1.1E-27 147.7 10.3 109 15-123 28-141 (220)
105 PRK15112 antimicrobial peptide 99.9 4.9E-23 1.1E-27 152.0 10.3 108 16-123 37-149 (267)
106 TIGR02324 CP_lyasePhnL phospho 99.9 5.5E-23 1.2E-27 147.8 10.2 101 16-116 32-140 (224)
107 cd03257 ABC_NikE_OppD_transpor 99.9 7.4E-23 1.6E-27 147.2 10.8 108 16-123 29-145 (228)
108 PRK13540 cytochrome c biogenes 99.9 3.9E-23 8.5E-28 146.6 9.1 117 1-123 1-127 (200)
109 PRK10619 histidine/lysine/argi 99.9 5.5E-23 1.2E-27 150.8 10.2 122 2-123 6-152 (257)
110 COG3845 ABC-type uncharacteriz 99.9 1.3E-23 2.7E-28 163.5 7.1 110 15-124 27-141 (501)
111 PRK10762 D-ribose transporter 99.9 2.5E-23 5.3E-28 165.1 8.8 124 1-124 4-142 (501)
112 PRK13648 cbiO cobalt transport 99.9 4.9E-23 1.1E-27 152.1 9.7 122 2-123 8-142 (269)
113 PRK11144 modC molybdate transp 99.9 7.9E-23 1.7E-27 156.3 11.0 104 15-124 21-129 (352)
114 PRK13651 cobalt transporter AT 99.9 4.9E-23 1.1E-27 154.9 9.6 109 16-124 31-166 (305)
115 TIGR01189 ccmA heme ABC export 99.9 7.1E-23 1.5E-27 145.0 9.9 103 16-123 24-127 (198)
116 PRK10247 putative ABC transpor 99.9 4.4E-23 9.5E-28 148.8 9.0 119 2-123 8-137 (225)
117 cd03300 ABC_PotA_N PotA is an 99.9 1.8E-22 3.9E-27 146.1 12.1 107 15-123 23-130 (232)
118 cd03226 ABC_cobalt_CbiO_domain 99.9 4.5E-23 9.7E-28 146.6 8.8 103 15-124 23-127 (205)
119 PRK13639 cbiO cobalt transport 99.9 5.2E-23 1.1E-27 152.5 9.4 124 1-124 1-138 (275)
120 PRK15079 oligopeptide ABC tran 99.9 8E-23 1.7E-27 155.2 10.6 109 16-124 45-162 (331)
121 PRK11231 fecE iron-dicitrate t 99.9 2.6E-23 5.6E-28 152.3 7.7 123 1-123 2-138 (255)
122 PRK13646 cbiO cobalt transport 99.9 6.6E-23 1.4E-27 152.7 9.9 109 15-124 30-146 (286)
123 TIGR02769 nickel_nikE nickel i 99.9 9.4E-23 2E-27 150.3 10.6 108 16-123 35-150 (265)
124 PRK13634 cbiO cobalt transport 99.9 5.4E-23 1.2E-27 153.5 9.3 108 16-124 31-146 (290)
125 cd03299 ABC_ModC_like Archeal 99.9 1.6E-22 3.5E-27 146.6 11.5 107 15-123 22-129 (235)
126 PRK13642 cbiO cobalt transport 99.9 7E-23 1.5E-27 151.9 9.7 108 16-123 31-140 (277)
127 PRK13643 cbiO cobalt transport 99.9 6.8E-23 1.5E-27 152.9 9.7 108 16-124 30-145 (288)
128 PRK10575 iron-hydroxamate tran 99.9 3E-23 6.5E-28 152.9 7.5 108 16-123 35-147 (265)
129 PRK13543 cytochrome c biogenes 99.9 1.1E-22 2.5E-27 145.6 10.2 116 2-123 12-137 (214)
130 PRK13547 hmuV hemin importer A 99.9 3.2E-23 6.9E-28 153.6 7.5 123 1-123 1-145 (272)
131 PRK11300 livG leucine/isoleuci 99.9 6E-23 1.3E-27 150.2 8.8 123 2-124 6-154 (255)
132 TIGR03873 F420-0_ABC_ATP propo 99.9 5.3E-23 1.1E-27 150.8 8.5 109 15-123 24-137 (256)
133 PRK13641 cbiO cobalt transport 99.9 8E-23 1.7E-27 152.3 9.5 109 16-124 31-146 (287)
134 PRK13549 xylose transporter AT 99.9 4.5E-23 9.7E-28 163.8 8.6 124 1-124 5-144 (506)
135 COG4181 Predicted ABC-type tra 99.9 6.5E-23 1.4E-27 142.1 8.2 108 15-122 33-145 (228)
136 COG4604 CeuD ABC-type enteroch 99.9 6.7E-24 1.4E-28 149.7 3.3 124 1-124 1-136 (252)
137 TIGR01184 ntrCD nitrate transp 99.9 2.4E-22 5.2E-27 145.4 11.5 106 14-124 7-115 (230)
138 PRK10253 iron-enterobactin tra 99.9 3.5E-23 7.7E-28 152.5 7.2 123 2-124 8-144 (265)
139 cd03231 ABC_CcmA_heme_exporter 99.9 8.3E-23 1.8E-27 145.1 8.7 101 16-123 24-125 (201)
140 TIGR00968 3a0106s01 sulfate AB 99.9 2.8E-22 6E-27 145.6 11.6 106 15-122 23-129 (237)
141 TIGR03005 ectoine_ehuA ectoine 99.9 1.7E-22 3.6E-27 147.8 10.3 109 15-123 23-146 (252)
142 PRK11247 ssuB aliphatic sulfon 99.9 9.4E-23 2E-27 150.0 8.9 112 2-124 13-134 (257)
143 PRK13636 cbiO cobalt transport 99.9 1.2E-22 2.5E-27 151.2 9.6 109 16-124 30-142 (283)
144 cd03235 ABC_Metallic_Cations A 99.9 7.9E-23 1.7E-27 146.0 8.1 104 15-123 22-132 (213)
145 PRK14268 phosphate ABC transpo 99.9 1.7E-22 3.7E-27 148.3 10.0 113 2-115 13-141 (258)
146 COG4619 ABC-type uncharacteriz 99.9 7.9E-24 1.7E-28 146.2 2.6 100 14-116 25-124 (223)
147 PRK14241 phosphate transporter 99.9 2.1E-22 4.6E-27 147.7 10.4 100 16-115 28-135 (258)
148 PRK13649 cbiO cobalt transport 99.9 1.9E-22 4.2E-27 149.6 10.2 108 16-124 31-146 (280)
149 PRK13539 cytochrome c biogenes 99.9 1.3E-22 2.9E-27 144.6 8.9 109 1-116 2-119 (207)
150 PRK13633 cobalt transporter AT 99.9 2.4E-22 5.1E-27 149.3 10.2 109 16-124 34-145 (280)
151 PRK09700 D-allose transporter 99.9 9.6E-23 2.1E-27 162.0 8.5 124 1-124 5-146 (510)
152 TIGR03740 galliderm_ABC gallid 99.9 5E-22 1.1E-26 142.8 11.5 101 16-124 24-125 (223)
153 PRK13541 cytochrome c biogenes 99.9 2.6E-22 5.6E-27 141.9 9.7 114 1-123 1-123 (195)
154 PRK14250 phosphate ABC transpo 99.9 1E-22 2.2E-27 148.2 7.8 104 16-124 27-132 (241)
155 TIGR03410 urea_trans_UrtE urea 99.9 1.6E-22 3.4E-27 146.0 8.5 95 16-113 24-119 (230)
156 PRK13631 cbiO cobalt transport 99.9 1.9E-22 4.2E-27 152.5 9.4 108 16-124 50-177 (320)
157 TIGR02770 nickel_nikD nickel i 99.9 5.5E-22 1.2E-26 143.4 11.2 100 14-115 8-113 (230)
158 PRK14269 phosphate ABC transpo 99.9 2.7E-22 5.9E-27 146.3 9.6 99 16-115 26-129 (246)
159 PRK11614 livF leucine/isoleuci 99.9 1.3E-22 2.9E-27 147.0 7.8 98 16-115 29-128 (237)
160 TIGR01978 sufC FeS assembly AT 99.9 4.8E-22 1.1E-26 144.3 10.5 101 15-115 23-133 (243)
161 PRK10744 pstB phosphate transp 99.9 3.1E-22 6.6E-27 147.1 9.3 113 2-115 14-143 (260)
162 PRK14235 phosphate transporter 99.9 4E-22 8.7E-27 147.1 9.8 99 16-115 43-150 (267)
163 PRK15439 autoinducer 2 ABC tra 99.9 1.5E-22 3.3E-27 161.0 8.0 119 2-124 12-141 (510)
164 cd03297 ABC_ModC_molybdenum_tr 99.9 6.2E-22 1.3E-26 141.6 10.4 105 16-123 22-131 (214)
165 TIGR01257 rim_protein retinal- 99.9 2.9E-22 6.4E-27 176.9 9.8 122 2-124 1938-2071(2272)
166 PRK14242 phosphate transporter 99.9 6.6E-22 1.4E-26 144.6 10.0 100 15-115 29-136 (253)
167 PRK14273 phosphate ABC transpo 99.9 5.4E-22 1.2E-26 145.2 9.5 98 16-114 31-136 (254)
168 PRK09984 phosphonate/organopho 99.9 2.7E-22 6E-27 147.4 8.0 123 2-124 5-153 (262)
169 PRK11308 dppF dipeptide transp 99.9 9.3E-22 2E-26 149.2 10.9 109 16-124 39-155 (327)
170 PRK11288 araG L-arabinose tran 99.9 3.6E-22 7.8E-27 158.5 9.0 124 1-124 4-141 (501)
171 COG4559 ABC-type hemin transpo 99.9 1.1E-22 2.3E-27 144.8 5.3 109 16-124 25-136 (259)
172 PRK03695 vitamin B12-transport 99.9 4.8E-22 1E-26 145.3 8.8 107 15-123 19-126 (248)
173 cd03234 ABCG_White The White s 99.9 1.1E-21 2.5E-26 141.3 10.6 107 14-123 29-143 (226)
174 COG4148 ModC ABC-type molybdat 99.9 1.5E-22 3.3E-27 149.0 5.8 103 16-124 22-129 (352)
175 PRK14270 phosphate ABC transpo 99.9 9.5E-22 2.1E-26 143.7 9.7 113 2-115 5-134 (251)
176 PRK14262 phosphate ABC transpo 99.9 1.1E-21 2.4E-26 143.2 10.0 114 1-115 3-133 (250)
177 COG1129 MglA ABC-type sugar tr 99.9 3.7E-22 7.9E-27 157.0 7.7 109 16-124 32-146 (500)
178 PRK13645 cbiO cobalt transport 99.9 1.2E-21 2.5E-26 146.1 10.0 109 16-124 35-151 (289)
179 PRK14259 phosphate ABC transpo 99.9 7.2E-22 1.6E-26 146.0 8.7 111 2-114 14-140 (269)
180 TIGR01187 potA spermidine/putr 99.9 1.3E-21 2.7E-26 148.3 10.1 100 23-124 1-101 (325)
181 PRK14240 phosphate transporter 99.9 1.4E-21 3E-26 142.7 10.0 99 16-115 27-133 (250)
182 PRK14246 phosphate ABC transpo 99.9 1.7E-21 3.7E-26 143.2 10.4 100 16-115 34-140 (257)
183 PRK14237 phosphate transporter 99.9 1.3E-21 2.9E-26 144.4 9.8 113 2-115 21-150 (267)
184 TIGR02633 xylG D-xylose ABC tr 99.9 1E-21 2.2E-26 155.8 9.6 124 1-124 1-142 (500)
185 PRK14254 phosphate ABC transpo 99.9 1.6E-21 3.5E-26 145.3 10.1 112 2-115 40-167 (285)
186 PRK11701 phnK phosphonate C-P 99.9 1.7E-21 3.6E-26 143.0 9.8 123 2-124 7-152 (258)
187 PRK09700 D-allose transporter 99.9 7.3E-22 1.6E-26 157.0 8.5 123 2-124 266-410 (510)
188 PRK10261 glutathione transport 99.9 2.3E-21 5E-26 157.5 11.6 109 16-124 348-464 (623)
189 PRK14256 phosphate ABC transpo 99.9 2.7E-21 5.9E-26 141.4 10.9 100 16-115 28-135 (252)
190 PRK14272 phosphate ABC transpo 99.9 2.1E-21 4.6E-26 141.8 10.2 113 2-114 5-134 (252)
191 PRK14251 phosphate ABC transpo 99.9 2.2E-21 4.7E-26 141.7 9.9 99 16-115 28-134 (251)
192 PRK10982 galactose/methyl gala 99.9 1.2E-21 2.7E-26 155.1 9.2 110 15-124 21-135 (491)
193 PRK14239 phosphate transporter 99.9 2.4E-21 5.2E-26 141.5 10.0 113 2-115 6-135 (252)
194 PRK14274 phosphate ABC transpo 99.9 2E-21 4.3E-26 142.7 9.4 113 2-115 13-142 (259)
195 PRK10418 nikD nickel transport 99.9 4.5E-21 9.8E-26 140.5 11.0 111 2-116 5-129 (254)
196 TIGR01257 rim_protein retinal- 99.9 2E-21 4.4E-26 171.7 10.7 122 2-124 929-1062(2272)
197 TIGR03771 anch_rpt_ABC anchore 99.9 3.6E-21 7.8E-26 138.7 10.2 104 15-123 3-113 (223)
198 PRK14271 phosphate ABC transpo 99.9 3E-21 6.6E-26 143.2 10.0 113 2-115 22-150 (276)
199 PRK14253 phosphate ABC transpo 99.9 2.4E-21 5.3E-26 141.3 9.4 113 2-115 4-132 (249)
200 PRK11022 dppD dipeptide transp 99.9 3.6E-21 7.7E-26 145.9 10.3 101 16-116 31-142 (326)
201 PRK14261 phosphate ABC transpo 99.9 5.1E-21 1.1E-25 140.0 10.6 113 2-115 7-136 (253)
202 PRK10419 nikE nickel transport 99.9 4.2E-21 9.1E-26 141.8 10.0 100 16-115 36-141 (268)
203 PRK14248 phosphate ABC transpo 99.9 3.8E-21 8.2E-26 141.9 9.5 113 2-115 22-151 (268)
204 PRK14245 phosphate ABC transpo 99.9 4.2E-21 9E-26 140.2 9.6 114 1-115 3-133 (250)
205 PRK14260 phosphate ABC transpo 99.9 4.5E-21 9.7E-26 140.9 9.7 99 16-115 31-137 (259)
206 PRK14249 phosphate ABC transpo 99.9 6E-21 1.3E-25 139.5 10.3 113 2-115 5-134 (251)
207 PRK14263 phosphate ABC transpo 99.9 5.9E-21 1.3E-25 140.6 10.2 98 16-115 32-136 (261)
208 PRK09473 oppD oligopeptide tra 99.8 6.1E-21 1.3E-25 144.9 10.5 101 16-116 40-150 (330)
209 TIGR03269 met_CoM_red_A2 methy 99.8 2.6E-21 5.7E-26 154.1 8.9 109 16-124 24-169 (520)
210 PRK15134 microcin C ABC transp 99.8 5.1E-21 1.1E-25 152.8 10.5 108 16-124 310-426 (529)
211 PRK14258 phosphate ABC transpo 99.8 8.3E-21 1.8E-25 139.7 10.4 99 16-115 31-137 (261)
212 PRK10261 glutathione transport 99.8 1.2E-20 2.5E-25 153.4 12.2 109 16-124 40-169 (623)
213 cd03230 ABC_DR_subfamily_A Thi 99.8 3.1E-21 6.7E-26 134.1 7.4 72 16-88 24-95 (173)
214 PRK14244 phosphate ABC transpo 99.8 1.2E-20 2.6E-25 137.9 10.8 99 16-115 29-136 (251)
215 PRK14255 phosphate ABC transpo 99.8 9.4E-21 2E-25 138.4 10.2 113 1-114 5-134 (252)
216 cd03233 ABC_PDR_domain1 The pl 99.8 4.4E-21 9.6E-26 136.4 8.2 89 2-91 4-108 (202)
217 PRK14275 phosphate ABC transpo 99.8 1.2E-20 2.5E-25 140.7 10.5 99 15-114 62-168 (286)
218 TIGR02868 CydC thiol reductant 99.8 1.1E-21 2.4E-26 156.4 5.3 94 15-116 358-451 (529)
219 PF00005 ABC_tran: ABC transpo 99.8 8.6E-22 1.9E-26 131.4 3.9 90 14-116 7-96 (137)
220 PRK14238 phosphate transporter 99.8 9.6E-21 2.1E-25 140.1 9.8 112 2-114 25-153 (271)
221 TIGR03269 met_CoM_red_A2 methy 99.8 1.7E-20 3.6E-25 149.5 11.7 100 16-116 308-414 (520)
222 TIGR02323 CP_lyasePhnK phospho 99.8 1.4E-20 3.1E-25 137.5 10.2 109 16-124 27-149 (253)
223 PRK14236 phosphate transporter 99.8 1.4E-20 3E-25 139.3 10.2 99 16-115 49-155 (272)
224 cd03229 ABC_Class3 This class 99.8 3.5E-21 7.6E-26 134.4 6.6 73 16-88 24-98 (178)
225 PRK15134 microcin C ABC transp 99.8 1.5E-20 3.2E-25 150.2 11.0 109 16-124 33-157 (529)
226 PLN03211 ABC transporter G-25; 99.8 1.5E-20 3.3E-25 153.5 11.2 98 15-116 91-193 (659)
227 PRK15093 antimicrobial peptide 99.8 1.8E-20 3.9E-25 142.2 10.6 101 16-116 31-147 (330)
228 PRK10535 macrolide transporter 99.8 1.5E-20 3.3E-25 153.3 10.9 123 1-123 4-144 (648)
229 PRK10762 D-ribose transporter 99.8 1.4E-20 3.1E-25 149.4 9.8 110 15-124 275-396 (501)
230 PRK11819 putative ABC transpor 99.8 2.2E-20 4.7E-25 150.1 10.6 79 1-90 6-94 (556)
231 TIGR02633 xylG D-xylose ABC tr 99.8 9.2E-21 2E-25 150.3 8.4 109 16-124 284-404 (500)
232 cd03248 ABCC_TAP TAP, the Tran 99.8 2.1E-21 4.5E-26 139.8 4.2 74 16-90 38-111 (226)
233 cd03251 ABCC_MsbA MsbA is an e 99.8 5.6E-21 1.2E-25 138.1 6.1 75 15-90 25-99 (234)
234 CHL00131 ycf16 sulfate ABC tra 99.8 3.8E-20 8.3E-25 135.1 10.5 100 16-115 31-140 (252)
235 COG4133 CcmA ABC-type transpor 99.8 1E-20 2.2E-25 132.3 6.9 105 15-123 25-130 (209)
236 PRK14243 phosphate transporter 99.8 2.1E-20 4.6E-25 137.8 8.9 97 16-114 34-137 (264)
237 PRK13549 xylose transporter AT 99.8 2.1E-20 4.5E-25 148.6 9.5 109 16-124 286-406 (506)
238 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 5.5E-20 1.2E-24 132.7 10.8 110 3-124 24-143 (224)
239 PRK14265 phosphate ABC transpo 99.8 2.3E-20 5E-25 138.3 9.1 111 2-114 21-147 (274)
240 COG0444 DppD ABC-type dipeptid 99.8 6.5E-20 1.4E-24 137.0 11.3 106 15-120 28-146 (316)
241 PRK14252 phosphate ABC transpo 99.8 3.8E-20 8.2E-25 136.3 9.8 100 15-115 39-148 (265)
242 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 4.9E-20 1.1E-24 147.9 11.1 79 1-90 4-92 (552)
243 COG1134 TagH ABC-type polysacc 99.8 2.8E-20 6E-25 134.5 8.7 95 16-123 51-147 (249)
244 cd03215 ABC_Carb_Monos_II This 99.8 2.1E-20 4.5E-25 130.9 7.5 77 14-90 22-102 (182)
245 cd03237 ABC_RNaseL_inhibitor_d 99.8 6.7E-20 1.5E-24 134.1 10.2 96 13-124 20-116 (246)
246 PRK10790 putative multidrug tr 99.8 7.9E-21 1.7E-25 153.2 5.8 94 15-116 364-457 (592)
247 PRK15064 ABC transporter ATP-b 99.8 6.5E-20 1.4E-24 146.5 11.0 79 1-90 1-88 (530)
248 cd03245 ABCC_bacteriocin_expor 99.8 1.2E-20 2.6E-25 135.3 6.1 94 16-116 28-121 (220)
249 cd03244 ABCC_MRP_domain2 Domai 99.8 1.2E-20 2.6E-25 135.4 6.0 74 15-89 27-100 (221)
250 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 1.1E-20 2.4E-25 154.8 6.5 94 15-116 476-569 (686)
251 COG1123 ATPase components of v 99.8 7.1E-20 1.5E-24 145.1 10.8 109 16-124 315-430 (539)
252 COG4136 ABC-type uncharacteriz 99.8 1.2E-20 2.7E-25 128.6 5.4 107 15-124 25-135 (213)
253 TIGR00955 3a01204 The Eye Pigm 99.8 4.3E-20 9.3E-25 150.0 9.6 103 16-121 49-158 (617)
254 cd03213 ABCG_EPDR ABCG transpo 99.8 8.6E-20 1.9E-24 129.1 9.9 74 16-92 33-108 (194)
255 cd03246 ABCC_Protease_Secretio 99.8 1.6E-20 3.5E-25 130.5 6.1 71 16-87 26-96 (173)
256 PRK15056 manganese/iron transp 99.8 4E-20 8.7E-25 136.8 8.5 105 16-123 31-142 (272)
257 PRK11288 araG L-arabinose tran 99.8 2.3E-20 5E-25 148.2 7.7 110 15-124 276-397 (501)
258 PRK10938 putative molybdenum t 99.8 1E-20 2.3E-25 149.7 5.7 116 1-124 3-136 (490)
259 PRK14266 phosphate ABC transpo 99.8 7.1E-20 1.5E-24 133.7 9.7 99 16-115 27-133 (250)
260 PRK09544 znuC high-affinity zi 99.8 4.5E-20 9.8E-25 135.3 8.4 104 2-123 5-120 (251)
261 PRK11176 lipid transporter ATP 99.8 9.9E-21 2.1E-25 152.3 5.1 95 15-115 366-460 (582)
262 COG4598 HisP ABC-type histidin 99.8 7.4E-21 1.6E-25 133.0 3.8 107 16-122 30-151 (256)
263 PRK11174 cysteine/glutathione 99.8 1.2E-20 2.7E-25 152.0 5.6 73 16-90 374-446 (588)
264 PRK14264 phosphate ABC transpo 99.8 1.1E-19 2.3E-24 136.7 9.7 99 16-115 69-187 (305)
265 cd03254 ABCC_Glucan_exporter_l 99.8 1.5E-20 3.3E-25 135.5 4.8 75 15-90 26-100 (229)
266 TIGR02857 CydD thiol reductant 99.8 2.4E-20 5.3E-25 148.6 6.5 95 14-115 344-438 (529)
267 cd03252 ABCC_Hemolysin The ABC 99.8 2.3E-20 5E-25 135.2 5.7 75 15-90 25-99 (237)
268 KOG0061|consensus 99.8 1.3E-19 2.8E-24 147.0 10.5 108 12-122 50-164 (613)
269 PRK13546 teichoic acids export 99.8 3.3E-19 7.2E-24 131.7 11.6 95 16-123 48-143 (264)
270 cd03250 ABCC_MRP_domain1 Domai 99.8 7.3E-20 1.6E-24 130.0 7.6 62 15-90 28-89 (204)
271 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 2.1E-20 4.5E-25 135.5 4.8 74 16-90 27-100 (238)
272 cd03228 ABCC_MRP_Like The MRP 99.8 3.7E-20 8.1E-25 128.5 5.7 71 16-87 26-96 (171)
273 PRK15439 autoinducer 2 ABC tra 99.8 1.4E-19 2.9E-24 144.2 9.6 110 15-124 286-404 (510)
274 cd03232 ABC_PDR_domain2 The pl 99.8 1.8E-19 3.8E-24 127.2 9.1 73 15-91 30-104 (192)
275 COG1101 PhnK ABC-type uncharac 99.8 7.1E-20 1.5E-24 130.7 7.0 99 16-114 30-136 (263)
276 PRK09580 sufC cysteine desulfu 99.8 2.1E-19 4.5E-24 130.9 9.7 115 1-115 1-134 (248)
277 cd03369 ABCC_NFT1 Domain 2 of 99.8 3.6E-20 7.9E-25 131.8 5.6 73 16-89 32-104 (207)
278 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 1.9E-20 4E-25 153.8 4.6 94 15-115 502-595 (710)
279 cd03253 ABCC_ATM1_transporter 99.8 3.9E-20 8.5E-25 133.8 5.7 74 16-90 25-98 (236)
280 PRK11160 cysteine/glutathione 99.8 3E-20 6.4E-25 149.7 5.5 94 16-116 364-457 (574)
281 TIGR00958 3a01208 Conjugate Tr 99.8 2.8E-20 6.2E-25 153.0 5.4 94 15-115 504-597 (711)
282 PRK14257 phosphate ABC transpo 99.8 4.1E-19 9E-24 134.8 11.1 99 16-115 106-212 (329)
283 cd03289 ABCC_CFTR2 The CFTR su 99.8 4E-20 8.6E-25 137.4 5.4 94 14-116 26-119 (275)
284 cd03290 ABCC_SUR1_N The SUR do 99.8 2E-19 4.4E-24 128.9 8.4 75 15-90 24-102 (218)
285 TIGR00956 3a01205 Pleiotropic 99.8 3.2E-19 6.9E-24 155.0 11.0 103 15-121 786-895 (1394)
286 COG4674 Uncharacterized ABC-ty 99.8 4.9E-20 1.1E-24 130.0 4.7 110 15-124 28-148 (249)
287 TIGR01193 bacteriocin_ABC ABC- 99.8 3.5E-20 7.5E-25 152.2 4.5 74 16-90 498-571 (708)
288 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 2.7E-19 5.9E-24 143.6 9.5 110 2-124 323-444 (552)
289 PRK13657 cyclic beta-1,2-gluca 99.8 4.7E-20 1E-24 148.7 5.1 76 14-90 357-432 (588)
290 PRK11819 putative ABC transpor 99.8 2.7E-19 5.8E-24 143.8 9.4 110 2-124 325-446 (556)
291 cd03247 ABCC_cytochrome_bd The 99.8 3.8E-20 8.3E-25 129.1 3.9 70 16-87 26-95 (178)
292 COG2274 SunT ABC-type bacterio 99.8 8.9E-20 1.9E-24 149.5 6.5 75 15-90 496-570 (709)
293 TIGR02204 MsbA_rel ABC transpo 99.8 5.3E-20 1.1E-24 147.8 4.8 94 15-115 363-456 (576)
294 TIGR03375 type_I_sec_LssB type 99.8 5.3E-20 1.2E-24 150.9 4.9 94 15-115 488-581 (694)
295 TIGR02203 MsbA_lipidA lipid A 99.8 5.3E-20 1.1E-24 147.6 4.7 95 15-115 355-449 (571)
296 KOG0059|consensus 99.8 2.3E-19 5E-24 150.5 8.7 108 16-123 589-698 (885)
297 COG4988 CydD ABC-type transpor 99.8 1.5E-19 3.3E-24 143.2 6.8 94 16-116 345-438 (559)
298 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.8E-19 3.8E-24 128.0 6.5 74 15-88 23-99 (200)
299 PRK15064 ABC transporter ATP-b 99.8 4.8E-19 1E-23 141.5 9.0 93 16-124 343-439 (530)
300 PRK10982 galactose/methyl gala 99.8 4.4E-19 9.6E-24 140.5 8.3 123 2-124 251-392 (491)
301 COG4167 SapF ABC-type antimicr 99.8 8.1E-19 1.8E-23 123.1 8.5 103 12-114 33-138 (267)
302 COG4161 ArtP ABC-type arginine 99.8 1.7E-19 3.6E-24 124.5 5.0 107 15-121 25-139 (242)
303 PRK10789 putative multidrug tr 99.8 1.5E-19 3.3E-24 145.4 5.5 75 15-90 338-412 (569)
304 PRK10938 putative molybdenum t 99.8 3.7E-19 8E-24 140.9 7.5 123 2-124 261-402 (490)
305 COG0396 sufC Cysteine desulfur 99.8 1.2E-18 2.6E-23 125.2 9.3 108 15-122 27-142 (251)
306 COG1132 MdlB ABC-type multidru 99.8 2.7E-19 5.9E-24 143.8 6.3 75 15-90 352-426 (567)
307 cd03223 ABCD_peroxisomal_ALDP 99.8 9.3E-19 2E-23 121.1 8.0 62 16-89 25-86 (166)
308 TIGR00956 3a01205 Pleiotropic 99.8 1.3E-18 2.8E-23 151.3 10.5 100 16-116 85-196 (1394)
309 PRK13545 tagH teichoic acids e 99.8 1.6E-18 3.4E-23 137.8 10.1 97 15-124 47-144 (549)
310 cd03288 ABCC_SUR2 The SUR doma 99.8 2.8E-19 6.1E-24 131.3 5.5 74 15-89 44-117 (257)
311 COG1123 ATPase components of v 99.8 3E-18 6.4E-23 136.0 11.3 103 15-117 32-145 (539)
312 PRK15177 Vi polysaccharide exp 99.8 1.9E-18 4.1E-23 123.9 9.4 73 14-99 9-82 (213)
313 KOG0058|consensus 99.8 3E-19 6.6E-24 144.2 5.8 77 15-92 491-567 (716)
314 TIGR01846 type_I_sec_HlyB type 99.8 1.8E-19 4E-24 147.8 4.6 75 15-90 480-554 (694)
315 cd03236 ABC_RNaseL_inhibitor_d 99.8 1.5E-18 3.3E-23 127.6 8.9 103 15-123 23-139 (255)
316 PLN03140 ABC transporter G fam 99.8 1.9E-18 4E-23 150.5 10.8 76 16-94 189-267 (1470)
317 PRK11147 ABC transporter ATPas 99.8 1.5E-18 3.3E-23 141.3 9.4 110 2-124 320-441 (635)
318 KOG0057|consensus 99.8 5E-19 1.1E-23 139.5 6.1 95 14-116 374-468 (591)
319 TIGR01842 type_I_sec_PrtD type 99.8 1.2E-18 2.5E-23 139.6 7.8 73 16-89 342-414 (544)
320 PLN03140 ABC transporter G fam 99.8 3.5E-18 7.6E-23 148.9 10.5 103 15-120 903-1011(1470)
321 PRK13409 putative ATPase RIL; 99.8 4.7E-18 1E-22 137.5 10.4 92 15-124 362-454 (590)
322 TIGR01192 chvA glucan exporter 99.8 9.7E-19 2.1E-23 141.3 6.1 74 16-90 359-432 (585)
323 PLN03232 ABC transporter C fam 99.7 7.4E-19 1.6E-23 153.6 4.8 92 16-115 1260-1351(1495)
324 PRK10522 multidrug transporter 99.7 1.6E-18 3.5E-23 138.9 6.3 90 16-116 347-436 (547)
325 COG4618 ArpD ABC-type protease 99.7 1.4E-18 3.1E-23 136.1 5.3 75 14-89 358-432 (580)
326 PLN03130 ABC transporter C fam 99.7 1.3E-18 2.9E-23 152.7 5.5 93 15-115 1262-1354(1622)
327 PTZ00243 ABC transporter; Prov 99.7 2.2E-18 4.8E-23 151.0 6.8 93 16-116 1334-1426(1560)
328 COG4586 ABC-type uncharacteriz 99.7 1.9E-18 4E-23 127.0 4.9 101 15-116 47-148 (325)
329 PTZ00265 multidrug resistance 99.7 1.4E-18 3.1E-23 151.4 4.5 93 16-115 1192-1338(1466)
330 COG1119 ModF ABC-type molybden 99.7 8.8E-19 1.9E-23 126.9 2.6 122 3-124 33-172 (257)
331 cd03291 ABCC_CFTR1 The CFTR su 99.7 8.1E-18 1.8E-22 125.4 7.8 62 15-90 60-121 (282)
332 TIGR01194 cyc_pep_trnsptr cycl 99.7 3.8E-18 8.2E-23 137.1 5.9 92 15-116 365-456 (555)
333 PRK10636 putative ABC transpor 99.7 2.8E-17 6.1E-22 134.0 11.0 112 1-124 1-150 (638)
334 cd03216 ABC_Carb_Monos_I This 99.7 4.7E-18 1E-22 117.3 5.2 59 15-73 23-82 (163)
335 TIGR00957 MRP_assoc_pro multi 99.7 3.3E-18 7.2E-23 149.7 5.4 93 15-115 1309-1401(1522)
336 cd03214 ABC_Iron-Siderophores_ 99.7 1.8E-18 3.9E-23 120.9 2.7 59 15-73 22-80 (180)
337 COG4172 ABC-type uncharacteriz 99.7 2.9E-17 6.3E-22 126.3 9.4 110 14-124 309-427 (534)
338 KOG0055|consensus 99.7 4.7E-18 1E-22 143.7 5.3 75 15-90 376-450 (1228)
339 COG0488 Uup ATPase components 99.7 3.8E-17 8.2E-22 130.5 9.4 78 2-90 4-90 (530)
340 TIGR00954 3a01203 Peroxysomal 99.7 1.7E-17 3.7E-22 135.7 7.6 89 16-116 476-565 (659)
341 PRK13409 putative ATPase RIL; 99.7 1.1E-17 2.4E-22 135.3 5.9 101 15-124 96-213 (590)
342 PRK10636 putative ABC transpor 99.7 5.8E-17 1.3E-21 132.2 9.1 92 16-124 336-431 (638)
343 PTZ00265 multidrug resistance 99.7 8.6E-18 1.9E-22 146.6 4.5 75 15-90 408-483 (1466)
344 COG4778 PhnL ABC-type phosphon 99.7 2.6E-17 5.7E-22 114.2 5.4 101 16-116 35-143 (235)
345 TIGR01271 CFTR_protein cystic 99.7 2.4E-17 5.3E-22 144.1 6.5 91 16-115 1243-1333(1490)
346 PRK11147 ABC transporter ATPas 99.7 2.6E-16 5.6E-21 128.3 11.0 53 1-53 3-64 (635)
347 KOG0055|consensus 99.7 4.4E-17 9.5E-22 137.9 6.5 74 16-90 1014-1087(1228)
348 COG4987 CydC ABC-type transpor 99.7 1.8E-17 4E-22 130.5 3.1 95 15-116 361-455 (573)
349 cd03222 ABC_RNaseL_inhibitor T 99.7 1.2E-16 2.6E-21 111.9 6.2 51 14-76 21-71 (177)
350 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 1.3E-16 2.8E-21 108.1 5.9 49 14-73 22-70 (144)
351 COG4138 BtuD ABC-type cobalami 99.7 6E-17 1.3E-21 113.0 4.0 106 13-124 20-126 (248)
352 PLN03073 ABC transporter F fam 99.6 2E-15 4.4E-20 124.5 10.5 93 16-124 533-628 (718)
353 cd00267 ABC_ATPase ABC (ATP-bi 99.6 4.4E-16 9.5E-21 106.4 5.4 59 15-73 22-80 (157)
354 KOG0065|consensus 99.6 1.4E-15 3E-20 129.4 8.8 104 16-122 815-924 (1391)
355 COG4608 AppF ABC-type oligopep 99.6 1.7E-15 3.6E-20 111.3 7.4 43 16-58 37-79 (268)
356 COG4107 PhnK ABC-type phosphon 99.6 2.4E-15 5.2E-20 105.1 7.3 99 14-115 28-141 (258)
357 COG4172 ABC-type uncharacteriz 99.6 7.2E-15 1.6E-19 113.2 9.7 112 11-122 29-152 (534)
358 cd00820 PEPCK_HprK Phosphoenol 99.6 1.1E-15 2.5E-20 98.7 4.3 67 15-90 12-78 (107)
359 TIGR01271 CFTR_protein cystic 99.6 3E-15 6.4E-20 131.2 8.2 63 15-91 449-511 (1490)
360 KOG0056|consensus 99.6 5.5E-16 1.2E-20 121.8 0.9 74 16-90 562-635 (790)
361 PLN03130 ABC transporter C fam 99.6 6.5E-15 1.4E-19 129.7 7.1 62 15-90 640-702 (1622)
362 TIGR00957 MRP_assoc_pro multi 99.5 1E-14 2.2E-19 128.0 7.7 62 15-90 661-722 (1522)
363 PTZ00243 ABC transporter; Prov 99.5 1.8E-14 3.9E-19 126.7 8.6 62 15-90 683-744 (1560)
364 PLN03232 ABC transporter C fam 99.5 1.6E-14 3.4E-19 126.8 8.0 63 15-90 640-702 (1495)
365 KOG0054|consensus 99.5 2.9E-15 6.3E-20 128.8 3.1 73 15-88 1163-1235(1381)
366 COG0488 Uup ATPase components 99.5 4.2E-14 9.2E-19 113.1 9.0 92 16-124 346-440 (530)
367 COG4615 PvdE ABC-type sideroph 99.5 5.6E-15 1.2E-19 113.6 -0.1 69 13-81 344-412 (546)
368 cd03238 ABC_UvrA The excision 99.5 1.4E-13 3.1E-18 96.3 6.9 52 13-73 16-67 (176)
369 cd03278 ABC_SMC_barmotin Barmo 99.4 1.9E-13 4.1E-18 97.1 4.4 61 14-78 19-88 (197)
370 COG5265 ATM1 ABC-type transpor 99.4 8.4E-14 1.8E-18 107.6 2.3 75 15-90 286-360 (497)
371 PLN03073 ABC transporter F fam 99.4 4.7E-14 1E-18 116.5 0.9 40 16-55 201-243 (718)
372 cd03273 ABC_SMC2_euk Eukaryoti 99.4 4.8E-14 1E-18 103.2 -0.7 99 17-115 24-137 (251)
373 cd03272 ABC_SMC3_euk Eukaryoti 99.4 1E-12 2.2E-17 95.4 5.2 73 17-89 22-122 (243)
374 COG4178 ABC-type uncharacteriz 99.3 3E-12 6.5E-17 103.2 7.1 87 14-116 415-501 (604)
375 KOG0054|consensus 99.3 3.7E-12 8E-17 110.1 7.8 66 13-92 542-607 (1381)
376 cd03283 ABC_MutS-like MutS-lik 99.3 7.3E-13 1.6E-17 94.3 1.8 81 16-114 23-103 (199)
377 cd01130 VirB11-like_ATPase Typ 99.3 1.7E-11 3.7E-16 86.2 8.5 76 15-93 22-99 (186)
378 TIGR03238 dnd_assoc_3 dnd syst 99.2 2.2E-12 4.8E-17 101.6 1.7 59 14-75 28-87 (504)
379 cd03240 ABC_Rad50 The catalyti 99.2 5.7E-12 1.2E-16 89.9 2.7 70 16-89 21-99 (204)
380 TIGR02858 spore_III_AA stage I 99.2 1.1E-11 2.5E-16 92.0 1.9 67 19-86 112-179 (270)
381 PRK10078 ribose 1,5-bisphospho 99.2 6.5E-11 1.4E-15 83.1 5.4 55 18-75 2-56 (186)
382 COG1245 Predicted ATPase, RNas 99.1 1.3E-10 2.8E-15 91.1 6.8 66 11-90 360-425 (591)
383 cd03270 ABC_UvrA_I The excisio 99.1 4.5E-10 9.7E-15 81.2 9.0 25 14-38 17-42 (226)
384 KOG0064|consensus 99.1 1.6E-10 3.5E-15 91.9 7.0 66 14-91 504-569 (728)
385 PRK09825 idnK D-gluconate kina 99.1 3.3E-11 7.1E-16 84.3 2.6 70 17-91 2-71 (176)
386 KOG0060|consensus 99.1 1.5E-10 3.1E-15 92.6 5.9 94 14-116 457-551 (659)
387 KOG0927|consensus 99.1 1.4E-10 3.1E-15 92.1 5.7 94 15-124 413-510 (614)
388 cd03274 ABC_SMC4_euk Eukaryoti 99.1 1.3E-11 2.7E-16 88.7 -0.8 57 19-89 26-82 (212)
389 KOG0065|consensus 99.1 4.1E-10 8.9E-15 96.7 7.9 99 15-116 138-247 (1391)
390 PRK07196 fliI flagellum-specif 99.1 2.9E-10 6.2E-15 89.2 5.9 79 16-94 153-240 (434)
391 cd03279 ABC_sbcCD SbcCD and ot 99.0 1.8E-10 3.9E-15 82.5 3.5 58 17-76 27-86 (213)
392 cd03271 ABC_UvrA_II The excisi 99.0 8.6E-10 1.9E-14 81.6 7.2 106 13-124 16-170 (261)
393 TIGR00235 udk uridine kinase. 99.0 1.2E-10 2.5E-15 83.1 2.2 30 15-44 3-32 (207)
394 cd01854 YjeQ_engC YjeQ/EngC. 99.0 1.4E-09 3E-14 81.4 6.1 74 18-91 161-241 (287)
395 COG1129 MglA ABC-type sugar tr 99.0 3.6E-09 7.8E-14 84.1 8.5 109 16-124 283-402 (500)
396 TIGR00554 panK_bact pantothena 98.9 6.7E-10 1.4E-14 83.3 3.7 75 18-94 62-138 (290)
397 COG3845 ABC-type uncharacteriz 98.9 3.7E-09 8E-14 83.3 7.9 101 15-115 281-393 (501)
398 PRK06002 fliI flagellum-specif 98.9 6.6E-10 1.4E-14 87.4 3.6 62 15-76 162-230 (450)
399 PRK10416 signal recognition pa 98.9 5.5E-10 1.2E-14 84.7 3.0 75 16-90 112-192 (318)
400 PRK09270 nucleoside triphospha 98.9 1.1E-09 2.3E-14 79.4 4.3 73 16-93 31-107 (229)
401 PRK01889 GTPase RsgA; Reviewed 98.9 2.7E-09 5.8E-14 82.1 6.7 63 14-79 191-253 (356)
402 PRK06995 flhF flagellar biosyn 98.9 1E-09 2.2E-14 87.2 4.3 62 16-97 254-315 (484)
403 COG4170 SapD ABC-type antimicr 98.9 1.2E-09 2.6E-14 78.8 4.0 103 14-116 29-147 (330)
404 PRK00098 GTPase RsgA; Reviewed 98.9 4.2E-09 9.1E-14 79.2 7.1 74 17-90 163-243 (298)
405 PRK06315 type III secretion sy 98.9 3.1E-09 6.7E-14 83.6 5.5 99 16-115 162-277 (442)
406 TIGR02322 phosphon_PhnN phosph 98.9 5.8E-09 1.3E-13 72.4 6.2 66 18-84 1-82 (179)
407 PRK00300 gmk guanylate kinase; 98.8 3.1E-09 6.7E-14 75.2 4.0 28 16-43 3-30 (205)
408 KOG2355|consensus 98.8 1.6E-08 3.5E-13 72.6 6.2 46 13-58 35-80 (291)
409 PLN02318 phosphoribulokinase/u 98.8 7.7E-09 1.7E-13 83.8 4.7 63 19-89 66-128 (656)
410 PF13555 AAA_29: P-loop contai 98.8 9.6E-09 2.1E-13 60.1 3.6 30 17-46 22-51 (62)
411 PRK07721 fliI flagellum-specif 98.7 2.1E-08 4.5E-13 79.1 6.2 59 16-74 156-222 (438)
412 TIGR02788 VirB11 P-type DNA tr 98.7 8.1E-08 1.8E-12 72.5 9.0 73 16-91 142-215 (308)
413 KOG0066|consensus 98.7 2.1E-08 4.6E-13 79.0 5.3 82 16-115 611-694 (807)
414 PRK11545 gntK gluconate kinase 98.7 5.9E-09 1.3E-13 72.0 1.3 64 24-92 1-64 (163)
415 cd02025 PanK Pantothenate kina 98.7 1.5E-08 3.3E-13 73.1 3.0 32 20-51 1-34 (220)
416 cd03243 ABC_MutS_homologs The 98.7 1.6E-08 3.5E-13 71.8 3.0 25 16-40 27-51 (202)
417 cd03275 ABC_SMC1_euk Eukaryoti 98.7 1.6E-08 3.6E-13 73.9 3.0 34 19-52 23-56 (247)
418 cd03280 ABC_MutS2 MutS2 homolo 98.7 2.6E-08 5.5E-13 70.7 3.9 24 16-39 25-49 (200)
419 PRK08149 ATP synthase SpaL; Va 98.6 2E-08 4.4E-13 78.8 3.4 61 16-76 149-216 (428)
420 PRK07960 fliI flagellum-specif 98.6 4.8E-08 1E-12 77.1 5.1 61 16-76 173-239 (455)
421 PLN02796 D-glycerate 3-kinase 98.6 3.1E-08 6.7E-13 75.8 4.0 41 16-56 93-141 (347)
422 PRK03846 adenylylsulfate kinas 98.6 2E-08 4.2E-13 71.2 2.6 59 13-75 19-78 (198)
423 TIGR02524 dot_icm_DotB Dot/Icm 98.6 1E-07 2.2E-12 73.5 6.2 59 16-75 132-193 (358)
424 TIGR00606 rad50 rad50. This fa 98.6 8E-08 1.7E-12 84.3 5.8 38 19-56 29-71 (1311)
425 cd04155 Arl3 Arl3 subfamily. 98.6 9.1E-08 2E-12 65.4 5.0 40 16-55 12-59 (173)
426 cd02026 PRK Phosphoribulokinas 98.6 5.8E-08 1.3E-12 72.3 4.0 33 20-52 1-33 (273)
427 cd01136 ATPase_flagellum-secre 98.6 1.2E-07 2.5E-12 72.3 5.3 39 16-54 67-105 (326)
428 TIGR03263 guanyl_kin guanylate 98.5 7.7E-08 1.7E-12 66.7 3.8 26 18-43 1-26 (180)
429 TIGR02546 III_secr_ATP type II 98.5 1.3E-07 2.8E-12 74.4 5.4 66 16-81 143-214 (422)
430 cd02023 UMPK Uridine monophosp 98.5 5.1E-08 1.1E-12 68.8 2.8 23 20-42 1-23 (198)
431 TIGR00101 ureG urease accessor 98.5 3.3E-08 7.1E-13 70.4 1.7 55 20-75 3-57 (199)
432 COG2401 ABC-type ATPase fused 98.5 6.5E-08 1.4E-12 75.6 3.2 36 16-51 407-450 (593)
433 TIGR03498 FliI_clade3 flagella 98.5 1.4E-07 3E-12 74.0 5.1 39 16-54 138-176 (418)
434 PF03193 DUF258: Protein of un 98.5 1.2E-07 2.5E-12 65.6 3.9 34 17-50 34-67 (161)
435 PRK10463 hydrogenase nickel in 98.5 1.2E-07 2.6E-12 71.1 3.9 51 4-54 88-140 (290)
436 PRK07594 type III secretion sy 98.5 1.7E-07 3.6E-12 73.8 4.9 39 16-54 153-191 (433)
437 cd03276 ABC_SMC6_euk Eukaryoti 98.5 2.5E-07 5.5E-12 65.7 5.3 60 16-79 20-82 (198)
438 PRK09099 type III secretion sy 98.5 2.4E-07 5.2E-12 73.1 5.5 39 16-54 161-199 (441)
439 cd03284 ABC_MutS1 MutS1 homolo 98.5 1.2E-07 2.5E-12 68.4 3.4 58 18-89 30-88 (216)
440 cd03281 ABC_MSH5_euk MutS5 hom 98.5 1.6E-07 3.5E-12 67.5 4.1 32 19-51 30-63 (213)
441 TIGR01026 fliI_yscN ATPase Fli 98.4 3.1E-07 6.7E-12 72.5 5.3 39 16-54 161-199 (440)
442 PRK08533 flagellar accessory p 98.4 2.5E-07 5.4E-12 67.2 4.3 51 3-53 9-60 (230)
443 cd01131 PilT Pilus retraction 98.4 1.5E-06 3.3E-11 61.7 8.2 37 20-56 3-40 (198)
444 PRK05922 type III secretion sy 98.4 3.6E-07 7.8E-12 71.9 5.3 39 16-54 155-193 (434)
445 PRK05480 uridine/cytidine kina 98.4 2.4E-07 5.3E-12 65.9 4.0 26 17-42 5-30 (209)
446 PRK04863 mukB cell division pr 98.4 2.8E-07 6.1E-12 81.4 5.1 37 19-55 28-64 (1486)
447 TIGR01360 aden_kin_iso1 adenyl 98.4 1.3E-07 2.8E-12 65.7 2.3 34 18-51 3-39 (188)
448 cd04104 p47_IIGP_like p47 (47- 98.4 2.5E-07 5.4E-12 65.4 3.6 33 20-52 3-35 (197)
449 PLN03046 D-glycerate 3-kinase; 98.4 3.1E-07 6.8E-12 72.0 4.1 37 19-55 213-252 (460)
450 PRK00635 excinuclease ABC subu 98.4 3.6E-06 7.8E-11 75.4 11.1 22 15-36 618-639 (1809)
451 KOG0927|consensus 98.4 2.8E-07 6E-12 73.7 3.8 34 16-49 99-132 (614)
452 PRK14721 flhF flagellar biosyn 98.4 3E-07 6.5E-12 72.2 3.8 26 16-41 189-214 (420)
453 TIGR03497 FliI_clade2 flagella 98.4 6.1E-07 1.3E-11 70.4 5.4 40 16-55 135-174 (413)
454 cd04159 Arl10_like Arl10-like 98.4 2.5E-07 5.4E-12 61.5 2.7 21 21-41 2-22 (159)
455 TIGR03496 FliI_clade1 flagella 98.4 6.4E-07 1.4E-11 70.2 5.2 39 16-54 135-173 (411)
456 PRK09862 putative ATP-dependen 98.4 5.3E-07 1.2E-11 72.3 4.8 41 16-56 208-248 (506)
457 KOG0062|consensus 98.4 2.2E-07 4.7E-12 73.9 2.4 27 14-40 102-128 (582)
458 PRK06793 fliI flagellum-specif 98.4 7.7E-07 1.7E-11 70.1 5.4 40 16-55 154-193 (432)
459 cd03287 ABC_MSH3_euk MutS3 hom 98.3 2.7E-07 5.9E-12 66.8 2.6 36 16-51 29-65 (222)
460 TIGR00150 HI0065_YjeE ATPase, 98.3 4.5E-07 9.7E-12 60.8 3.5 39 6-44 10-48 (133)
461 COG1245 Predicted ATPase, RNas 98.3 4.3E-07 9.4E-12 71.7 3.9 34 16-49 98-131 (591)
462 cd03282 ABC_MSH4_euk MutS4 hom 98.3 3.1E-07 6.6E-12 65.7 2.8 26 16-41 27-52 (204)
463 PRK00889 adenylylsulfate kinas 98.3 4.2E-07 9.1E-12 62.9 3.2 38 16-53 2-40 (175)
464 PRK08472 fliI flagellum-specif 98.3 8.2E-07 1.8E-11 70.0 5.2 41 15-55 154-194 (434)
465 PRK10751 molybdopterin-guanine 98.3 5.4E-07 1.2E-11 63.0 3.6 35 20-54 8-45 (173)
466 smart00382 AAA ATPases associa 98.3 1.2E-06 2.7E-11 56.4 5.1 37 17-53 1-38 (148)
467 KOG0062|consensus 98.3 1E-06 2.2E-11 70.2 4.9 86 16-116 388-473 (582)
468 TIGR02168 SMC_prok_B chromosom 98.3 8.8E-07 1.9E-11 76.0 5.0 55 18-75 23-86 (1179)
469 PTZ00132 GTP-binding nuclear p 98.3 1.2E-06 2.6E-11 62.5 4.7 25 20-44 11-36 (215)
470 cd01876 YihA_EngB The YihA (En 98.3 5.1E-07 1.1E-11 60.5 2.5 28 21-48 2-31 (170)
471 cd00879 Sar1 Sar1 subfamily. 98.3 1.6E-06 3.5E-11 60.3 5.0 35 20-54 21-63 (190)
472 PLN02165 adenylate isopentenyl 98.3 1E-06 2.2E-11 67.3 4.1 43 16-58 41-87 (334)
473 PRK05541 adenylylsulfate kinas 98.2 1E-06 2.2E-11 61.0 3.6 40 16-55 5-45 (176)
474 cd00071 GMPK Guanosine monopho 98.2 1.1E-06 2.4E-11 58.9 3.5 26 20-45 1-26 (137)
475 PRK07429 phosphoribulokinase; 98.2 1.4E-06 3.1E-11 66.4 4.4 32 19-50 9-40 (327)
476 smart00053 DYNc Dynamin, GTPas 98.2 1.1E-06 2.4E-11 64.4 3.6 32 20-51 28-61 (240)
477 PRK08972 fliI flagellum-specif 98.2 1.2E-06 2.5E-11 69.1 3.9 30 16-45 160-189 (444)
478 cd03227 ABC_Class2 ABC-type Cl 98.2 1.3E-06 2.9E-11 60.0 3.7 33 17-49 20-52 (162)
479 PRK05688 fliI flagellum-specif 98.2 1.6E-06 3.5E-11 68.5 4.4 30 16-45 166-195 (451)
480 TIGR00368 Mg chelatase-related 98.2 2E-06 4.2E-11 69.0 4.8 41 16-56 209-249 (499)
481 PRK13851 type IV secretion sys 98.2 2.5E-06 5.5E-11 65.5 4.9 38 16-53 160-197 (344)
482 cd01128 rho_factor Transcripti 98.2 2.6E-06 5.5E-11 62.8 4.7 31 16-46 14-44 (249)
483 PRK14723 flhF flagellar biosyn 98.2 1.4E-06 3.1E-11 72.6 3.6 37 15-51 182-220 (767)
484 PF13207 AAA_17: AAA domain; P 98.2 1.5E-06 3.3E-11 56.3 3.0 23 20-42 1-23 (121)
485 TIGR00017 cmk cytidylate kinas 98.2 1.1E-06 2.5E-11 63.3 2.6 31 20-50 4-37 (217)
486 TIGR01420 pilT_fam pilus retra 98.2 8.3E-06 1.8E-10 62.5 7.2 40 16-55 120-160 (343)
487 TIGR00455 apsK adenylylsulfate 98.2 1.4E-06 3E-11 60.8 2.7 43 14-56 14-57 (184)
488 cd01896 DRG The developmentall 98.2 3.2E-06 7E-11 61.5 4.7 34 20-53 2-46 (233)
489 TIGR00157 ribosome small subun 98.1 2.1E-06 4.6E-11 62.9 3.6 35 17-51 119-153 (245)
490 cd01120 RecA-like_NTPases RecA 98.1 1.5E-06 3.4E-11 58.1 2.4 35 20-54 1-35 (165)
491 PF13476 AAA_23: AAA domain; P 98.1 2.3E-06 4.9E-11 59.5 3.0 26 16-42 18-43 (202)
492 PRK14738 gmk guanylate kinase; 98.1 3.3E-06 7.2E-11 60.3 3.7 26 16-41 11-36 (206)
493 PF13304 AAA_21: AAA domain; P 98.1 6.4E-07 1.4E-11 63.1 0.0 23 20-42 1-23 (303)
494 PRK06820 type III secretion sy 98.1 5.8E-06 1.3E-10 65.3 5.3 38 16-53 161-198 (440)
495 TIGR01313 therm_gnt_kin carboh 98.1 2.7E-06 5.9E-11 58.1 3.1 31 21-55 1-31 (163)
496 PF01926 MMR_HSR1: 50S ribosom 98.1 2.8E-06 6E-11 54.8 2.9 21 21-41 2-22 (116)
497 COG1162 Predicted GTPases [Gen 98.1 2.2E-06 4.7E-11 64.5 2.7 35 16-50 162-196 (301)
498 cd01888 eIF2_gamma eIF2-gamma 98.1 5.8E-06 1.2E-10 58.7 4.6 31 20-50 2-33 (203)
499 PRK12288 GTPase RsgA; Reviewed 98.1 2.6E-06 5.6E-11 65.5 2.9 33 18-50 205-237 (347)
500 cd01878 HflX HflX subfamily. 98.1 4E-06 8.7E-11 59.1 3.5 24 19-42 42-65 (204)
No 1
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.7e-31 Score=200.65 Aligned_cols=109 Identities=28% Similarity=0.390 Sum_probs=99.1
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
.+++||+++|+||||||||||||+|+|+..|++|+|.++|.++....+ ..|.|++|||++.+||+|||+||++|+...
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P--~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~ 102 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP--EKRGIAMVFQNYALYPHMTVYENIAFGLKL 102 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--hHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence 348999999999999999999999999999999999999998876443 247899999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.+.++++..+++.++++.++|++ .+|.+..|
T Consensus 103 ~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~L 134 (338)
T COG3839 103 RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQL 134 (338)
T ss_pred CCCchHHHHHHHHHHHHHcCChhHHhcCcccC
Confidence 99999999999999999999987 57777665
No 2
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=2.7e-30 Score=196.14 Aligned_cols=108 Identities=30% Similarity=0.414 Sum_probs=94.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||+++|+||||||||||||||+|+..|++|+|.++|+++...++ .+|.||+|||+..+||+|||+||++|.....
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp--~kR~ig~VFQ~YALFPHltV~~NVafGLk~~ 105 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP--EKRPIGMVFQSYALFPHMTVEENVAFGLKVR 105 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--hhcccceeecCcccCCCCcHHHHhhhhhhhc
Confidence 38999999999999999999999999999999999999999876433 3578999999999999999999999998854
Q ss_pred C-CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 G-METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ~-~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+ ...+++.+++.++++.++|++ .+|.+.+|
T Consensus 106 ~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qL 137 (352)
T COG3842 106 KKLKKAEIKARVEEALELVGLEGFADRKPHQL 137 (352)
T ss_pred CCCCHHHHHHHHHHHHHHcCchhhhhhChhhh
Confidence 4 445678899999999999976 56777665
No 3
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=3.2e-30 Score=183.25 Aligned_cols=111 Identities=24% Similarity=0.345 Sum_probs=95.3
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCC-CCCcCCCeEEEEccCcccCCCCCHHHHHHHHH-
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTK-GSGVPGKRVGYMPQEIALYGEFSIKETMMYFG- 91 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~-~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~- 91 (125)
.+.+||+++|+||||||||||||||+++..|++|+|.++|.++... .....|+++|+|||++++||++||.||+.+..
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 3489999999999999999999999999999999999999766432 12234678999999999999999999999865
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 92 WIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
...+.++++.++++.++|+++||.+ .+.++..|
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qL 137 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQL 137 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCcccc
Confidence 4567888999999999999999977 46666654
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=4.2e-30 Score=186.63 Aligned_cols=124 Identities=27% Similarity=0.377 Sum_probs=108.4
Q ss_pred Cccccchhhhhcccc---------CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 1 MKTNTNTKKKKKKKK---------KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~---------~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
|...+|.+|+=..+. ++||+++++|||||||||+|++|++++.|++|+|.++|+++........|++||||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 445566666554443 99999999999999999999999999999999999999998776555567899999
Q ss_pred ccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc---cchhhhhc
Q psy340 72 PQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS---QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~L 124 (125)
-|...+||++||.||+.+...+.+++++++++++.++|+.+||+. .+|++.+|
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eL 136 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhc
Confidence 999999999999999999999999999999999999999999963 47888766
No 5
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.1e-29 Score=179.04 Aligned_cols=105 Identities=30% Similarity=0.444 Sum_probs=93.3
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
..+|||++||||||||||||||+|+|+..|++|+|.++|..+.. +...++||||++.++|..||.||+.+.....
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~-----p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~ 100 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG-----PGPDIGYVFQEDALLPWLTVLDNVALGLELR 100 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC-----CCCCEEEEeccCcccchhhHHhhheehhhcc
Confidence 38999999999999999999999999999999999999987632 3568999999999999999999999998877
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+.+..+..+++.++++.+||.. .++++.+|
T Consensus 101 ~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qL 131 (248)
T COG1116 101 GKSKAEARERAKELLELVGLAGFEDKYPHQL 131 (248)
T ss_pred ccchHhHHHHHHHHHHHcCCcchhhcCcccc
Confidence 7777777889999999999976 46776655
No 6
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.5e-28 Score=182.25 Aligned_cols=109 Identities=26% Similarity=0.380 Sum_probs=98.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
++||++||||+||||||||+|||+++..|++|+|.++|+++...... ..|++||++||+++++...||++|++|+..
T Consensus 30 ~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLe 109 (339)
T COG1135 30 PKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLE 109 (339)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHh
Confidence 89999999999999999999999999999999999999887654322 346789999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 93 IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
..+.++.+..+++.++++.+||++ .++++..|
T Consensus 110 iag~~k~ei~~RV~elLelVgL~dk~~~yP~qL 142 (339)
T COG1135 110 LAGVPKAEIKQRVAELLELVGLSDKADRYPAQL 142 (339)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhccCchhc
Confidence 999999999999999999999987 46777665
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=5.3e-28 Score=174.06 Aligned_cols=110 Identities=22% Similarity=0.304 Sum_probs=93.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC----CcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS----GVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~----~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||+++|+|||||||||||++|.|+..|++|.|.++|.++..... ..++++||||||+.++.|.+||.||+.++
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lp 107 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELP 107 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhH
Confidence 38999999999999999999999999999999999999988765432 23457899999999999999999999998
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCc-cc-hhhhhc
Q psy340 91 GWIFGMETPEIDDRLQFLLNFLDLPS-QS-RLVKNL 124 (125)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~L~~-~~-~~~~~L 124 (125)
..+.+.+..+..+++.++++.+||.+ .. +++.+|
T Consensus 108 l~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eL 143 (226)
T COG1136 108 LLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSEL 143 (226)
T ss_pred HHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhc
Confidence 87777665566788899999999975 33 666654
No 8
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.95 E-value=1.2e-28 Score=180.35 Aligned_cols=124 Identities=26% Similarity=0.381 Sum_probs=103.0
Q ss_pred Cccccchhhhhcccc---------CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 1 MKTNTNTKKKKKKKK---------KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~---------~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
|++++|++..-.+++ ++|++++|+||||||||||||||+|+++|.+|+|.++|+++.....+...+.++||
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 356667766665554 89999999999999999999999999999999999999998877666778899999
Q ss_pred ccCcccCCCCCHHHHHHHHHH----HhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 72 PQEIALYGEFSIKETMMYFGW----IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
||.+...+.+||.|.+.+... .+....++..+.+.++|+.+++.+ .+|.+.+|
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~L 139 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDEL 139 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccccc
Confidence 999988899999999998532 223335566678999999999987 57777765
No 9
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=9.7e-28 Score=179.45 Aligned_cols=122 Identities=34% Similarity=0.606 Sum_probs=101.9
Q ss_pred ccccchhhhhc-ccc---------CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 2 KTNTNTKKKKK-KKK---------KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 2 ~~~~~~~~~~~-~~~---------~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
+.++|++|+-. ++. ++|+++||+||||||||||+|+|+|+..|++|+|.++|.++... ....++++||+
T Consensus 5 i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy~ 83 (293)
T COG1131 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGYV 83 (293)
T ss_pred eeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEEE
Confidence 34577887777 333 99999999999999999999999999999999999999887654 22345789999
Q ss_pred ccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 72 PQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+|++.+++.+||.|++.|++.+++.+.....++++++++.++|+. .++.++.|
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~l 137 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTL 137 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhc
Confidence 999999999999999999999998765556778999999999976 34545543
No 10
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.8e-27 Score=176.43 Aligned_cols=111 Identities=27% Similarity=0.397 Sum_probs=93.1
Q ss_pred ccccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCc---cCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 12 KKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG---KPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 12 ~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~---~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
+-.+++||.+||+||||||||||||+|+|+..|++|.|.++|+ |.... ....++||||||+..+|++|||.+|++
T Consensus 22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R~VGfvFQ~YALF~HmtVa~NIA 99 (345)
T COG1118 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDRKVGFVFQHYALFPHMTVADNIA 99 (345)
T ss_pred eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhcceeEEEechhhcccchHHhhhh
Confidence 3445899999999999999999999999999999999999998 54431 234578999999999999999999999
Q ss_pred HHHHHhC--CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 89 YFGWIFG--METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 89 ~~~~~~~--~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|...... .+..+++.++.++|+.+.|+. .++++..|
T Consensus 100 FGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QL 138 (345)
T COG1118 100 FGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQL 138 (345)
T ss_pred hcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhc
Confidence 9876552 235678899999999999987 46766654
No 11
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.94 E-value=3.8e-27 Score=164.84 Aligned_cols=110 Identities=26% Similarity=0.329 Sum_probs=97.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
+++||++-|+||||||||||||+|++..+|++|+|.++|.++...... ..+++||+||||..+.++.||+||++++.
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 489999999999999999999999999999999999999987653222 34789999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCCcc-chhhhhc
Q psy340 92 WIFGMETPEIDDRLQFLLNFLDLPSQ-SRLVKNL 124 (125)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~L 124 (125)
...+.+..++++++.++|+.+||.++ +.++..|
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~L 138 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQL 138 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCcccc
Confidence 99999999999999999999999774 5555544
No 12
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.7e-27 Score=179.00 Aligned_cols=121 Identities=31% Similarity=0.459 Sum_probs=98.8
Q ss_pred ccccchhhhh-cc---------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 2 KTNTNTKKKK-KK---------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 2 ~~~~~~~~~~-~~---------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
+.++|++|+- .. .+++||+++|+|||||||||||++|+|+.+|++|+|.++|.++..... .++.||||
T Consensus 4 l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v 81 (356)
T PRK11650 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP--ADRDIAMV 81 (356)
T ss_pred EEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEE
Confidence 5566776664 22 228999999999999999999999999999999999999988754322 23689999
Q ss_pred ccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 72 PQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
||++.+|+++||.||+.+....++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 135 (356)
T PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPREL 135 (356)
T ss_pred eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhC
Confidence 999999999999999999876655566666788999999999976 46666654
No 13
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1e-26 Score=177.65 Aligned_cols=121 Identities=26% Similarity=0.401 Sum_probs=99.1
Q ss_pred ccccchhhhhcc---------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKK---------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~---------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|++|+-.. .+++||+++|+|||||||||||++|+|+.+|++|+|.++|.++..... .++.+||||
T Consensus 7 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~vf 84 (351)
T PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICMVF 84 (351)
T ss_pred EEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEe
Confidence 456666665432 228999999999999999999999999999999999999988754321 246899999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+|+++||.||+.|....++.+..+..+++.++++.++|.+ .++.+.+|
T Consensus 85 Q~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~L 137 (351)
T PRK11432 85 QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQI 137 (351)
T ss_pred CCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhC
Confidence 99999999999999999877666666777889999999999976 46666554
No 14
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.94 E-value=1.4e-26 Score=177.05 Aligned_cols=107 Identities=32% Similarity=0.462 Sum_probs=91.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||+++|+|||||||||||++|+|+.+|++|+|.++|+++..... .++.+|||||++.+||++||.||+.|.....+
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~ 105 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--QKRDYGIVFQSYALFPNLTVADNIAYGLKNRG 105 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCcccCCCCcHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999987754222 24679999999999999999999999876666
Q ss_pred CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 96 METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.+..+..+++.++++.++|++ .++.+.+|
T Consensus 106 ~~~~~~~~~~~~~l~~l~L~~~~~~~~~~L 135 (353)
T TIGR03265 106 MGRAEVAERVAELLDLVGLPGSERKYPGQL 135 (353)
T ss_pred CCHHHHHHHHHHHHHHcCCCchhhCChhhC
Confidence 666777888999999999976 46666554
No 15
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.94 E-value=2.8e-26 Score=174.74 Aligned_cols=124 Identities=23% Similarity=0.299 Sum_probs=101.0
Q ss_pred Cccccchhhhhcc----c---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cC
Q psy340 1 MKTNTNTKKKKKK----K---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VP 64 (125)
Q Consensus 1 ~~~~~~~~~~~~~----~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~ 64 (125)
|+.++|++|+-.. . +++||++||+||||||||||+++|+|+.+|++|+|.++|.++...... ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5677788776531 1 399999999999999999999999999999999999999887543221 12
Q ss_pred CCeEEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 65 GKRVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 65 ~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
++.|||+||++.+++.+||.||+.++....+.+..+..+++.++++.++|.+ .++.+.+|
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~L 141 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNL 141 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 5689999999999999999999998776666666677788999999999976 46666554
No 16
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.94 E-value=2.2e-26 Score=173.03 Aligned_cols=122 Identities=29% Similarity=0.465 Sum_probs=98.1
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|+.|+-..+ +++||++||+||||||||||+++|+|+.+|++|+|.++|.++..... ..++.+||+|
T Consensus 8 i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~-~~~~~ig~v~ 86 (306)
T PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRAR-HARQRVGVVP 86 (306)
T ss_pred EEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchH-HHHhcEEEEe
Confidence 4556666654322 38999999999999999999999999999999999999988754322 2356899999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+++.+|+.||+.+....++.+..+..+++.++++.++|.. .++.+..|
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 139 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGEL 139 (306)
T ss_pred ccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhC
Confidence 99999999999999998777776666666778889999999975 45555544
No 17
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.4e-26 Score=175.61 Aligned_cols=107 Identities=25% Similarity=0.373 Sum_probs=91.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||+++|+|||||||||||++|+|+.+|++|+|.++|.++.... ..++.+|||||++.+|+++||.||+.+.....+
T Consensus 43 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~--~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~ 120 (377)
T PRK11607 43 YKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP--PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK 120 (377)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC--HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999998765422 134689999999999999999999998776555
Q ss_pred CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 96 METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.+..+..+++.++++.++|.+ .++.+.+|
T Consensus 121 ~~~~~~~~~v~~~l~~l~L~~~~~~~~~~L 150 (377)
T PRK11607 121 LPKAEIASRVNEMLGLVHMQEFAKRKPHQL 150 (377)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCChhhC
Confidence 566777788999999999975 46666554
No 18
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.93 E-value=4.4e-26 Score=175.47 Aligned_cols=107 Identities=26% Similarity=0.343 Sum_probs=91.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||+++|+|||||||||||++|+|+.+|++|+|.++|.++..... .++.+|||||++.+||++||.||+.|....++
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~ 115 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA--ENRHVNTVFQSYALFPHMTVFENVAFGLRMQK 115 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCcccCCCCCHHHHHHHHHhhcC
Confidence 8999999999999999999999999999999999999987754221 24679999999999999999999999766555
Q ss_pred CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 96 METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.+..+..+++.++++.++|++ .++.+.+|
T Consensus 116 ~~~~~~~~~~~~~l~~~~l~~~~~~~p~~L 145 (375)
T PRK09452 116 TPAAEITPRVMEALRMVQLEEFAQRKPHQL 145 (375)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 556666778899999999976 56666654
No 19
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=1.3e-27 Score=168.43 Aligned_cols=119 Identities=26% Similarity=0.360 Sum_probs=99.7
Q ss_pred ccccchhhhhcccc---------CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcC-CCeEEEE
Q psy340 2 KTNTNTKKKKKKKK---------KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVP-GKRVGYM 71 (125)
Q Consensus 2 ~~~~~~~~~~~~~~---------~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~ig~v 71 (125)
+.++|+.|.-+||. .+||++||+|||||||||.+.+++|+.+|++|.|.+++.+++..+-..+ +..|||+
T Consensus 5 L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYL 84 (243)
T COG1137 5 LVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYL 84 (243)
T ss_pred EEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccc
Confidence 67899999988876 9999999999999999999999999999999999999999876432222 3469999
Q ss_pred ccCcccCCCCCHHHHHHHHHHHhCCCh--HHHHHHHHHHHHhCCCCc-cchh
Q psy340 72 PQEIALYGEFSIKETMMYFGWIFGMET--PEIDDRLQFLLNFLDLPS-QSRL 120 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~--~~~~~~~~~~l~~~~L~~-~~~~ 120 (125)
||++..|..+||.||+.....+...+. .+.+++++++|+.|.|.+ .++.
T Consensus 85 pQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~ 136 (243)
T COG1137 85 PQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSK 136 (243)
T ss_pred cccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCc
Confidence 999999999999999998776654332 355667889999999976 3443
No 20
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.93 E-value=6.4e-26 Score=173.88 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=93.3
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcC----CCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVP----GKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~----~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||+++|+|||||||||||++|+|+.+|++|+|.++|.++........ ++.++||||++.+++++||.||+.+.
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~ 95 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLG 95 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999988765332222 56899999999999999999999987
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 91 GWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
....+....+..+++.++++.++|+. .++.+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~L 130 (363)
T TIGR01186 96 PELLGWPEQERKEKALELLKLVGLEEYEHRYPDEL 130 (363)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhC
Confidence 76666666677788999999999975 46666554
No 21
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.2e-26 Score=165.48 Aligned_cols=124 Identities=21% Similarity=0.235 Sum_probs=99.8
Q ss_pred Cccccchhhhh-ccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCCe
Q psy340 1 MKTNTNTKKKK-KKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKR 67 (125)
Q Consensus 1 ~~~~~~~~~~~-~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ 67 (125)
|+.++|++|.= +++ +++||+++||||||||||||||+|+|+..|.+|+|+++|.++...... ..+++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 35667777665 332 399999999999999999999999999999999999999887765433 23568
Q ss_pred EEEEccCcccCCCCCHHHHHHHHH--------HHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 68 VGYMPQEIALYGEFSIKETMMYFG--------WIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 68 ig~v~Q~~~~~~~~tv~e~l~~~~--------~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+||+||++++.+.++|.+|+.... .+.++...+.+.++.++|+++||.+ ..+..++|
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~L 148 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTL 148 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccC
Confidence 999999999999999999998743 3456777788889999999999965 34444443
No 22
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=2.9e-26 Score=165.21 Aligned_cols=109 Identities=25% Similarity=0.326 Sum_probs=95.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
++||+++|+||||||||||||+|.|+++|++|+|.++|.++...... ..++++|++||+..+|..+||+||+.|+.+
T Consensus 32 ~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr 111 (263)
T COG1127 32 PRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR 111 (263)
T ss_pred cCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH
Confidence 89999999999999999999999999999999999999987664332 235789999999999999999999999887
Q ss_pred Hh-CCChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 93 IF-GMETPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 93 ~~-~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
.+ ..+++.+++.+..-++.+||.. .++++++|
T Consensus 112 e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsEL 146 (263)
T COG1127 112 EHTKLPESLIRELVLMKLELVGLRGAAADLYPSEL 146 (263)
T ss_pred hhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhh
Confidence 65 4678888999999999999964 46777765
No 23
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.93 E-value=8.7e-26 Score=171.96 Aligned_cols=122 Identities=33% Similarity=0.492 Sum_probs=98.5
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|+.|+-.++ +++|+++||+||||||||||+++|+|+++|++|+|.++|.++.... ...++.+||+|
T Consensus 42 i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig~v~ 120 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGVVP 120 (340)
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEEEEe
Confidence 5567777765443 3999999999999999999999999999999999999998875432 22356899999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+++.+|+.||+.+....++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 121 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~L 173 (340)
T PRK13536 121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDL 173 (340)
T ss_pred CCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhC
Confidence 99999999999999998766666555556677888999999976 45655554
No 24
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.93 E-value=7.6e-26 Score=161.91 Aligned_cols=124 Identities=21% Similarity=0.270 Sum_probs=95.1
Q ss_pred Cccccchhhhhcc--c---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCC
Q psy340 1 MKTNTNTKKKKKK--K---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGK 66 (125)
Q Consensus 1 ~~~~~~~~~~~~~--~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~ 66 (125)
|+.++|++++-.. + +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...... ..++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 4566777665421 2 389999999999999999999999999999999999999876432111 1235
Q ss_pred eEEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 67 RVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 67 ~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.++|++|++.+++.+|+.||+.+.....+....+..+++.++++.++|++ .++.+.+|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 139 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQL 139 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 79999999999999999999988665544444455677889999999965 45555443
No 25
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.93 E-value=1.2e-25 Score=161.04 Aligned_cols=123 Identities=27% Similarity=0.413 Sum_probs=96.2
Q ss_pred Cccccchhhhhccc-------------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCe
Q psy340 1 MKTNTNTKKKKKKK-------------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR 67 (125)
Q Consensus 1 ~~~~~~~~~~~~~~-------------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 67 (125)
|+.++|++++-..+ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ....++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~ 79 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE-PAEARRR 79 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC-HHHHHhh
Confidence 45566776655332 289999999999999999999999999999999999999876432 1223467
Q ss_pred EEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 68 VGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 68 ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
++|++|++.+++.+|+.||+.+....++....+..+++.++++.++|++ .++.+.+|
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 137 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGF 137 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhc
Confidence 9999999999999999999988665555445556678889999999965 45555544
No 26
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.5e-26 Score=160.89 Aligned_cols=108 Identities=29% Similarity=0.421 Sum_probs=96.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||++||+|||||||||+||+|++++.|++|.|+++|.+....+. ..+++||+++.+..+|..+|++||+.|++.+++
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~-~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~ 104 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS-FVRRKIGVLFGERGLYARLTARENLKYFARLNG 104 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChH-HHhhhcceecCCcChhhhhhHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999988765433 346799999988899999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 96 METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+...+.+++++++.+.++|.+ .++.+..+
T Consensus 105 l~~~~~kari~~l~k~l~l~~~~~rRv~~~ 134 (245)
T COG4555 105 LSRKEIKARIAELSKRLQLLEYLDRRVGEF 134 (245)
T ss_pred hhhhHHHHHHHHHHHHhChHHHHHHHHhhh
Confidence 999999999999999999966 56665543
No 27
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.1e-25 Score=171.50 Aligned_cols=121 Identities=27% Similarity=0.385 Sum_probs=96.6
Q ss_pred ccccchhhhhcc---------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKK---------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~---------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|++|+-.. .+++||+++|+|||||||||||++|+|+.+|++|+|.++|.++..... .++.++|||
T Consensus 4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~v~ 81 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGMVF 81 (369)
T ss_pred EEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEEEe
Confidence 456666665332 238999999999999999999999999999999999999987653221 235799999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+++++||.||+.+.....+.+..+..+++.++++.++|++ .++.+.+|
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~L 134 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKAL 134 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhC
Confidence 99999999999999998766555555666778999999999975 46666554
No 28
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.9e-25 Score=170.26 Aligned_cols=124 Identities=24% Similarity=0.323 Sum_probs=98.0
Q ss_pred Cccccchhhhhc-----c--------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cC
Q psy340 1 MKTNTNTKKKKK-----K--------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VP 64 (125)
Q Consensus 1 ~~~~~~~~~~~~-----~--------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~ 64 (125)
|+.++|++|+-. + .+++||++||+||||||||||+++|+|+.+|++|+|.++|.++...... ..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 566777776543 1 1289999999999999999999999999999999999999877543211 12
Q ss_pred CCeEEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 65 GKRVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 65 ~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
++.+|||||++.+++.+||.||+.+....++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQL 141 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 4679999999999999999999998766555555566678899999999975 45555544
No 29
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.93 E-value=2.8e-25 Score=170.34 Aligned_cols=108 Identities=23% Similarity=0.342 Sum_probs=92.2
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCc--eeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNT--GEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~--G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
+++||+++|+|||||||||||++|+|+.+|++ |+|.++|.++..... .++.||||||++.+|+++||.||+.|...
T Consensus 28 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ig~vfQ~~~l~p~~tv~enl~~~l~ 105 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGLALLFQNYALFPHLKVEDNVAFGLR 105 (362)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCEEEEECCcccCCCCcHHHHHHHHHH
Confidence 38999999999999999999999999999999 999999987643221 24679999999999999999999999876
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 93 IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 106 ~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~L 138 (362)
T TIGR03258 106 AQKMPKADIAERVADALKLVGLGDAAAHLPAQL 138 (362)
T ss_pred HcCCCHHHHHHHHHHHHHhcCCCchhhCChhhC
Confidence 666666677788999999999976 46666654
No 30
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.5e-25 Score=160.85 Aligned_cols=124 Identities=27% Similarity=0.371 Sum_probs=95.3
Q ss_pred Cccccchhhhhccc-------------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cC
Q psy340 1 MKTNTNTKKKKKKK-------------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VP 64 (125)
Q Consensus 1 ~~~~~~~~~~~~~~-------------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~ 64 (125)
|+.++|++++-.++ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...... ..
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 56677777765433 299999999999999999999999999999999999999876432211 12
Q ss_pred CCeEEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 65 GKRVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 65 ~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
++.++|++|++.+++.+|+.||+.+....++....+..+.+.++++.++|++ .++.+.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQL 141 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhC
Confidence 4579999999999999999999987654444444455667889999999965 34544443
No 31
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.93 E-value=2e-25 Score=167.40 Aligned_cols=110 Identities=24% Similarity=0.413 Sum_probs=90.7
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
.+++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...++.+||++|++.+++.+||.||+.+....
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 93 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP-RKVRRSIGIVPQYASVDEDLTGRENLEMMGRL 93 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCH-HHHHhhcEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 34899999999999999999999999999999999999998764321 12245799999999999999999999987766
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
++....+..+++.++++.++|++ .++.+.+|
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 125 (302)
T TIGR01188 94 YGLPKDEAEERAEELLELFELGEAADRPVGTY 125 (302)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhCCchhhC
Confidence 66555566678899999999975 45655544
No 32
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.93 E-value=2.7e-25 Score=159.14 Aligned_cols=109 Identities=24% Similarity=0.330 Sum_probs=86.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC----cCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG----VPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~----~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
++|++++|+||||||||||+++|+|+++|++|+|.++|.++...... ..++.++|++|++.+++.+|+.||+.+..
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 107 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPL 107 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHH
Confidence 89999999999999999999999999999999999999876432211 12357999999999999999999999865
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 92 WIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
..++....+..+++.++++.++|+. .++.+.+|
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (218)
T cd03255 108 LLAGVPKKERRERAEELLERVGLGDRLNHYPSEL 141 (218)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhc
Confidence 5544444445567889999999975 35555443
No 33
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.3e-25 Score=159.11 Aligned_cols=108 Identities=26% Similarity=0.430 Sum_probs=87.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ...++.++|++|++.+++.+|+.+++.+....++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-REVRRRIGIVFQDLSVDDELTGWENLYIHARLYG 102 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh-HHHhhcEEEecCCccccccCcHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999997654321 2234579999999998999999999988665555
Q ss_pred CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 96 METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
....+..+++.++++.++|++ .++.+.+|
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 132 (220)
T cd03265 103 VPGAERRERIDELLDFVGLLEAADRLVKTY 132 (220)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhhCChhhC
Confidence 444555677899999999965 35555443
No 34
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.6e-25 Score=160.32 Aligned_cols=110 Identities=24% Similarity=0.312 Sum_probs=87.2
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC---CcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS---GVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~---~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.++|++|++.+++.+||.||+.+..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 102 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPL 102 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHH
Confidence 39999999999999999999999999999999999999987643221 123467999999999999999999998764
Q ss_pred HHh-CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 92 WIF-GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 92 ~~~-~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
..+ .....+..+++.++++.++|.+ .++.+.+|
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 137 (235)
T cd03261 103 REHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAEL 137 (235)
T ss_pred hhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhC
Confidence 433 2344555677888999999965 45555543
No 35
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1.6e-25 Score=161.96 Aligned_cols=106 Identities=32% Similarity=0.566 Sum_probs=96.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
.++|+++|++|||||||||++|+|.|++.|++|+|.|+|.++... ...+|||+|.+-.+|+.+||.|.+.|.+.+.
T Consensus 25 v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~rIGyLPEERGLy~k~tv~dql~yla~Lk 100 (300)
T COG4152 25 VPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRIGYLPEERGLYPKMTVEDQLKYLAELK 100 (300)
T ss_pred ecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhhhcccChhhhccCccCcHHHHHHHHHHhc
Confidence 399999999999999999999999999999999999999887543 3467999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+++..+..+.+..||+++++.. ..+.+.+|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~L 131 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKEL 131 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHh
Confidence 9999999999999999999965 56666655
No 36
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.92 E-value=3.7e-25 Score=158.03 Aligned_cols=124 Identities=23% Similarity=0.261 Sum_probs=95.2
Q ss_pred Cccccchhhhh-c-c--------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCCe
Q psy340 1 MKTNTNTKKKK-K-K--------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKR 67 (125)
Q Consensus 1 ~~~~~~~~~~~-~-~--------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ 67 (125)
|+.++|++++- . + .+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...... ..++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 56677777764 2 2 2299999999999999999999999999999999999999876532211 12457
Q ss_pred EEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 68 VGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 68 ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
++|++|++.+++.+|+.||+.+.....+....+..+++.++++.++|++ .++.+.+|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQL 138 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 9999999999999999999988655444444455677889999999965 34544443
No 37
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.92 E-value=3e-25 Score=166.42 Aligned_cols=108 Identities=24% Similarity=0.483 Sum_probs=90.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||++||+||||||||||+++|+|+.+|++|+|.++|.++.... ...++.+||+||++.+++.+|+.||+.+....++
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~-~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~ 104 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP-KEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG 104 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh-HHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999998765422 2234679999999999999999999998776666
Q ss_pred CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 96 METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.+..+..+++.++++.++|.+ .++.++.|
T Consensus 105 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 134 (301)
T TIGR03522 105 MKGQLLKQRVEEMIELVGLRPEQHKKIGQL 134 (301)
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCchhhC
Confidence 655666678899999999976 46666554
No 38
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.92 E-value=3.9e-25 Score=165.89 Aligned_cols=122 Identities=31% Similarity=0.465 Sum_probs=94.8
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|++|+-..+ +++|+++||+||||||||||+++|+|+.+|++|+|.++|.++.... ...++.+||++
T Consensus 5 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i~~v~ 83 (303)
T TIGR01288 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA-RLARVAIGVVP 83 (303)
T ss_pred EEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH-HHHhhcEEEEe
Confidence 4566666654332 3899999999999999999999999999999999999998764321 22346799999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+++.+|+.||+.+....++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 84 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~L 136 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALL 136 (303)
T ss_pred ccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhC
Confidence 99999999999999987655555444555667888999999975 45555544
No 39
>PRK10908 cell division protein FtsE; Provisional
Probab=99.92 E-value=4.2e-25 Score=158.74 Aligned_cols=124 Identities=23% Similarity=0.269 Sum_probs=94.2
Q ss_pred Cccccchhhhh-ccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCCe
Q psy340 1 MKTNTNTKKKK-KKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKR 67 (125)
Q Consensus 1 ~~~~~~~~~~~-~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ 67 (125)
|+.++|+.++- .++ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...... ..++.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 45667776664 222 289999999999999999999999999999999999999876432111 12467
Q ss_pred EEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 68 VGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 68 ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
++|++|++.+++.+|+.||+.+.....+....+..+.+.++++.+++.+ .++.+.+|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQL 138 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhC
Confidence 9999999988889999999988655544444555667888999999965 34544443
No 40
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.5e-25 Score=156.45 Aligned_cols=108 Identities=31% Similarity=0.458 Sum_probs=86.7
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ..++.++|++|++.+++.+|+.||+.+.....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 100 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGMVFQDYALFPHLTVAENIAFGLKLR 100 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEEEcCchhhccCCcHHHHHHhHHHHc
Confidence 3899999999999999999999999999999999999998765322 12457999999999999999999998765444
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+....+..+++.++++.++|++ .++.+.+|
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 131 (213)
T cd03259 101 GVPKAEIRARVRELLELVGLEGLLNRYPHEL 131 (213)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhcChhhC
Confidence 4444455667889999999965 35555443
No 41
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.92 E-value=4.8e-25 Score=158.06 Aligned_cols=109 Identities=29% Similarity=0.543 Sum_probs=87.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ...++.++|++|++.+++.+|+.+|+.+....+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 103 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGYCPQFDALFDELTVREHLRFYARLK 103 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEEecCcCCccccCCHHHHHHHHHHHc
Confidence 3999999999999999999999999999999999999998764321 223457999999999999999999998866555
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+.+..+..+++.++++.++|.+ .++.+.+|
T Consensus 104 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 134 (220)
T cd03263 104 GLPKSEIKEEVELLLRVLGLTDKANKRARTL 134 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHhChhhhC
Confidence 5444455667889999999965 34544443
No 42
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.92 E-value=7.6e-25 Score=167.53 Aligned_cols=107 Identities=25% Similarity=0.396 Sum_probs=88.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh-
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF- 94 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~- 94 (125)
++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.... ..++.++||||++.+|+++||.||+.+.....
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~--~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~ 103 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH--ARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLP 103 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC--HHHCCEEEEecCcccCCCCcHHHHHHhhhhhcc
Confidence 899999999999999999999999999999999999998775422 12467999999999999999999999875432
Q ss_pred ---CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 ---GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ---~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
..+..+..+++.++++.++|++ .++.+.+|
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 137 (353)
T PRK10851 104 RRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQL 137 (353)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 2344566778999999999976 46666554
No 43
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.6e-25 Score=157.45 Aligned_cols=106 Identities=27% Similarity=0.346 Sum_probs=91.2
Q ss_pred hhccccCCCcEEEEECCCCCCHHHHHHHHhCCCcCC-----ceeEEEcCccCCCCCC--CcCCCeEEEEccCcccCCCCC
Q psy340 10 KKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLN-----TGEIWVLGGKPGTKGS--GVPGKRVGYMPQEIALYGEFS 82 (125)
Q Consensus 10 ~~~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~-----~G~i~~~g~~~~~~~~--~~~~~~ig~v~Q~~~~~~~~t 82 (125)
-.+-.+++++++||||||||||||||||+..+.... +|+|.++|+++..... ...|++||+|||.|+.|| ++
T Consensus 25 ~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~S 103 (253)
T COG1117 25 DINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MS 103 (253)
T ss_pred cCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-ch
Confidence 345567999999999999999999999999987654 4999999999877532 245789999999999999 89
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc
Q psy340 83 IKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
++||+++..+.++....+..+.++..|....|.+
T Consensus 104 IydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWd 137 (253)
T COG1117 104 IYDNVAYGLRLHGIKDKELDEIVESSLKKAALWD 137 (253)
T ss_pred HHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHH
Confidence 9999999999998777788889999999888854
No 44
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=9.1e-25 Score=155.73 Aligned_cols=104 Identities=29% Similarity=0.546 Sum_probs=85.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
.+|++++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..++.++|++|++.+++.+|+.||+.+....++
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 99 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG 99 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC
Confidence 8999999999999999999999999999999999999976532 234579999999999999999999987655555
Q ss_pred CChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 96 METPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
....+..+.+.++++.++++. .++.+.+
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 128 (210)
T cd03269 100 LKKEEARRRIDEWLERLELSEYANKRVEE 128 (210)
T ss_pred CChHHHHHHHHHHHHHcCChHHHhCcHhh
Confidence 444555677889999999965 3444444
No 45
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.3e-24 Score=157.29 Aligned_cols=109 Identities=22% Similarity=0.289 Sum_probs=86.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC----cCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG----VPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~----~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...... .+++.++|++|++.+++.+|+.||+.+..
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 112 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPL 112 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999876543211 11257999999999999999999998865
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 92 WIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
...+....+..+++.++++.++|++ .++.+.+|
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 146 (233)
T PRK11629 113 LIGKKKPAEINSRALEMLAAVGLEHRANHRPSEL 146 (233)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 4444444555677889999999965 34544443
No 46
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.92 E-value=1.9e-24 Score=154.24 Aligned_cols=108 Identities=26% Similarity=0.375 Sum_probs=86.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... .++.++|++|++.+++.+|+.||+.+.....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 100 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAMVFQNYALYPHMTVYDNIAFGLKLR 100 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEEEecChhhccCCCHHHHHHHHHHhc
Confidence 38999999999999999999999999999999999999987643221 2357999999998898999999998865444
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+....+..+++.++++.+++.+ .++.+.+|
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 131 (213)
T cd03301 101 KVPKDEIDERVREVAELLQIEHLLDRKPKQL 131 (213)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHhCChhhC
Confidence 4444555677888999999965 35555443
No 47
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.92 E-value=1.7e-24 Score=156.90 Aligned_cols=122 Identities=22% Similarity=0.282 Sum_probs=93.3
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
|+.++|+.++-..+ +.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++...... ..+.++|+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGVV 79 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEEe
Confidence 45667777654322 389999999999999999999999999999999999999876432222 23579999
Q ss_pred ccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 72 PQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
+|++.+++.+|+.+|+.+....++....+..+.+.++++.++|+. .++.+.+
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 132 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRE 132 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhh
Confidence 999988889999999987655444444445667888999999965 3444444
No 48
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2e-24 Score=157.09 Aligned_cols=110 Identities=25% Similarity=0.373 Sum_probs=87.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++|++++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++.+|+.||+.+.....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 103 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL 103 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc
Confidence 38999999999999999999999999999999999999987643222223457999999999999999999998765554
Q ss_pred CCChHHHHHHHHHHHHhCCCCc---cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS---QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~L 124 (125)
+....+..+++.++++.++|+. .++.+.+|
T Consensus 104 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~L 136 (242)
T cd03295 104 KWPKEKIRERADELLALVGLDPAEFADRYPHEL 136 (242)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhC
Confidence 4444555677889999999973 34544443
No 49
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.2e-24 Score=154.77 Aligned_cols=103 Identities=29% Similarity=0.428 Sum_probs=85.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++|++++|+||||||||||+++|+|+.+|++|+|.++|.++.. .++.++|++|++.+++.+|+.||+.+....++
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 102 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALGLELQG 102 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcEEEEecccccccCCCHHHHHHHHHHHcC
Confidence 8999999999999999999999999999999999999987642 24679999999998999999999988655544
Q ss_pred CChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 96 METPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
....+..+++.++++.++|++ .++.+.+
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 131 (220)
T cd03293 103 VPKAEARERAEELLELVGLSGFENAYPHQ 131 (220)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCCccc
Confidence 444455677889999999965 3444443
No 50
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.3e-24 Score=158.23 Aligned_cols=119 Identities=24% Similarity=0.248 Sum_probs=92.9
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
|+.++|++++-..+ +++|++++|+||||||||||+++|+|+.+|++|+|.++|.++... ...++|+
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~v 75 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGVV 75 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEEE
Confidence 45667776654322 389999999999999999999999999999999999999876421 2458999
Q ss_pred ccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 72 PQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+|++.+++.+|+.||+.+.....+....+..+++.++++.++|+. .++.+.+|
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 129 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQL 129 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhC
Confidence 999998999999999987654444444555677889999999965 34554443
No 51
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=2.2e-25 Score=160.77 Aligned_cols=109 Identities=24% Similarity=0.294 Sum_probs=89.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC-cCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG-VPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
++||+++||||||||||||+|+|+|.++|++|+|.++|+++...... ..+..|+--||.+.+|++|||.||++.....+
T Consensus 28 ~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~ 107 (250)
T COG0411 28 RPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHAR 107 (250)
T ss_pred cCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhh
Confidence 89999999999999999999999999999999999999998765433 22456888999999999999999999864311
Q ss_pred ------------CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 ------------GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ------------~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.....+..+++.++|+.+||.+ .++...+|
T Consensus 108 ~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~L 150 (250)
T COG0411 108 LGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNL 150 (250)
T ss_pred hhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcC
Confidence 1124667789999999999976 46665544
No 52
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.92 E-value=1.9e-24 Score=156.04 Aligned_cols=109 Identities=26% Similarity=0.417 Sum_probs=85.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCc-CCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGV-PGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
+++||+++|+|||||||||||++|+|+.+|++|+|.++|.++....... .++.++|++|++.+++.+|+.||+.+....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 102 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEI 102 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHh
Confidence 3899999999999999999999999999999999999998764322111 235699999999999999999999876544
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
++....+..+++.++++.+++++ .++.+.+
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 133 (232)
T cd03218 103 RGLSKKEREEKLEELLEEFHITHLRKSKASS 133 (232)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 44334445567888999999965 3454444
No 53
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.2e-24 Score=156.59 Aligned_cols=121 Identities=26% Similarity=0.327 Sum_probs=91.2
Q ss_pred ccccchhhhhcc---------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKK---------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~---------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|+.++-.. .+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... .++.++|++
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v~ 80 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFVF 80 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEEe
Confidence 455666655332 238999999999999999999999999999999999999987643221 235799999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCC----ChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGM----ETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+++.+||.||+.+.....+. ...+..+++.++++.++|+. .++.+.+|
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 137 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQL 137 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhC
Confidence 999999999999999876443322 23344567888999999965 35555443
No 54
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.9e-24 Score=167.55 Aligned_cols=110 Identities=16% Similarity=0.232 Sum_probs=90.3
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC----cCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG----VPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~----~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||+++|+|||||||||||++|+|+++|++|+|.++|.++...... .+++.++||||++.+++++||.||+.+.
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~ 130 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFG 130 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHH
Confidence 489999999999999999999999999999999999999887543211 1235799999999999999999999987
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 91 GWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
....+....+..+++.++++.++|.+ .++.+.+|
T Consensus 131 ~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~L 165 (400)
T PRK10070 131 MELAGINAEERREKALDALRQVGLENYAHSYPDEL 165 (400)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccC
Confidence 66555555566678889999999975 45655554
No 55
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.4e-24 Score=158.57 Aligned_cols=107 Identities=23% Similarity=0.395 Sum_probs=85.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc--ccCCCCCHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI--ALYGEFSIKETMMYFGW 92 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~ 92 (125)
+++|++++|+||||||||||+|+|+|+++|.+|+|.++|.+..... .+.+||||||.. ......||+|.+.+...
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~---~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~ 103 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR---KRLRIGYVPQKSSVDRSFPITVKDVVLLGRY 103 (254)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc---cCCeEEEcCcccccCCCCCcCHHHHHHccCc
Confidence 4999999999999999999999999999999999999987654321 246899999965 44566799999998532
Q ss_pred ----HhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 93 ----IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 93 ----~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+.+...++.++.+.++|+.+|+.+ .+|.+.+|
T Consensus 104 ~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~L 140 (254)
T COG1121 104 GKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGEL 140 (254)
T ss_pred ccccccccccHHHHHHHHHHHHHcCchhhhCCccccc
Confidence 122234455789999999999987 57777665
No 56
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.7e-24 Score=154.47 Aligned_cols=106 Identities=28% Similarity=0.577 Sum_probs=85.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++| +++|+||||||||||+++|+|+.+|++|+|.++|.++.... ...++.++|++|++.+++.+|+.||+.+.....+
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 101 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG 101 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEecCCCcccccCCHHHHHHHHHHHhC
Confidence 789 99999999999999999999999999999999998764322 2234679999999999999999999988665554
Q ss_pred CChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 96 METPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
....+..+++.++++.++|++ .++.+.+
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 130 (211)
T cd03264 102 IPSKEVKARVDEVLELVNLGDRAKKKIGS 130 (211)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHhCchhh
Confidence 444455667888999999965 3444444
No 57
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.91 E-value=2.4e-24 Score=153.78 Aligned_cols=108 Identities=23% Similarity=0.289 Sum_probs=86.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC---CcCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS---GVPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~---~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
++|++++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.++|++|++.+++.+|+.||+.+...
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~ 104 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALE 104 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHH
Confidence 8999999999999999999999999999999999999987643211 1124579999999999999999999988655
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 93 IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
.++....+..+++.++++.++++. .++.+.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (214)
T cd03292 105 VTGVPPREIRKRVPAALELVGLSHKHRALPAE 136 (214)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHhhCChhh
Confidence 444444555667889999999965 3444443
No 58
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.1e-24 Score=157.94 Aligned_cols=109 Identities=21% Similarity=0.337 Sum_probs=86.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC----cCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG----VPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~----~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
++|++++|+||||||||||+++|+|+.+|++|+|.++|.++...... ..++.++|++|++.+++.+|+.||+.+..
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 127 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGL 127 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHH
Confidence 89999999999999999999999999999999999999876432211 12357999999999999999999998865
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 92 WIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
...+....+..+++.++++.++|++ .++.+.+|
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 161 (269)
T cd03294 128 EVQGVPRAEREERAAEALELVGLEGWEHKYPDEL 161 (269)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccC
Confidence 4444444455567888999999965 35555443
No 59
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.91 E-value=3.2e-24 Score=153.90 Aligned_cols=109 Identities=24% Similarity=0.270 Sum_probs=85.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCc----CCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGV----PGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~----~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
++|++++|+||||||||||+++|+|+.+|++|+|.++|.++....... +++.++|++|++.+++.+|+.||+.+..
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 108 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPL 108 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHH
Confidence 899999999999999999999999999999999999998764322111 1257999999998899999999998765
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 92 WIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
..+.....+..+++.++++.+++++ .++.+.+|
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 142 (221)
T TIGR02211 109 LIGKKSVKEAKERAYEMLEKVGLEHRINHRPSEL 142 (221)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 4443334444567888999999965 45555443
No 60
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.91 E-value=3e-24 Score=152.47 Aligned_cols=109 Identities=22% Similarity=0.304 Sum_probs=86.2
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC----CcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS----GVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~----~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ...++.++|++|++.+++.+|+.||+.+.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~ 100 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLG 100 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHH
Confidence 38999999999999999999999999999999999999987532111 12345799999999999999999999886
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 91 GWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
....+....+..+++.++++.+++++ .++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 134 (206)
T TIGR03608 101 LKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYE 134 (206)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhh
Confidence 54444444555677889999999964 3555444
No 61
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.91 E-value=4e-24 Score=150.39 Aligned_cols=111 Identities=22% Similarity=0.284 Sum_probs=84.1
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC--CCcCCCeEEEEccCcc-cCCCCCHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG--SGVPGKRVGYMPQEIA-LYGEFSIKETMMYF 90 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~--~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~ 90 (125)
.+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ....++.++|++|++. .+...|+.||+.+.
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~ 93 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFG 93 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHH
Confidence 35899999999999999999999999999999999999998764211 1122457999999973 23357999999876
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 91 GWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
...++....+..+++.++++.++|++ .++.+.+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 128 (190)
T TIGR01166 94 PLNLGLSEAEVERRVREALTAVGASGLRERPTHCL 128 (190)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhC
Confidence 54444444555667889999999965 45555443
No 62
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.91 E-value=4e-24 Score=154.73 Aligned_cols=110 Identities=25% Similarity=0.273 Sum_probs=85.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCc-CCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGV-PGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++....... .+..++|++|++.+++.+||.||+.+....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~ 102 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQA 102 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhh
Confidence 3899999999999999999999999999999999999998764322111 234699999999999999999999876543
Q ss_pred hCC----------ChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 94 FGM----------ETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 94 ~~~----------~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
... ...+..+.+.++++.++++. .++.+.+|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 144 (236)
T cd03219 103 RTGSGLLLARARREEREARERAEELLERVGLADLADRPAGEL 144 (236)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhC
Confidence 321 13344567889999999965 35555543
No 63
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.91 E-value=7.4e-25 Score=152.78 Aligned_cols=109 Identities=22% Similarity=0.231 Sum_probs=90.0
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
.++.||+++|+|||||||||||+.|+|+..|.+|+|.++|++.....+. .+-++++||+.++|.++||.+|+.+...-
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSmlFQEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhhhhhccccchhhhhhhhhcccCCc
Confidence 3489999999999999999999999999999999999999987654332 35699999999999999999999985421
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.-.-..+.+++++.++..+||.. .+|.+.+|
T Consensus 99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~L 130 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130 (231)
T ss_pred ccccCHHHHHHHHHHHHHhChhhHhhhCcccc
Confidence 11124566788999999999976 46777655
No 64
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.91 E-value=4.5e-24 Score=153.86 Aligned_cols=109 Identities=25% Similarity=0.347 Sum_probs=86.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC----cCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG----VPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~----~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...... .+.+.++|++|++.+++.+|+.||+.+..
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~ 113 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPA 113 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHH
Confidence 89999999999999999999999999999999999999876432211 11357999999999999999999998765
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 92 WIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
..+.....+..+++.++++.++|.+ .++.+.+|
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 147 (228)
T PRK10584 114 LLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQL 147 (228)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhC
Confidence 4444444555677889999999965 35555443
No 65
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=2.9e-24 Score=156.01 Aligned_cols=123 Identities=22% Similarity=0.297 Sum_probs=92.7
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC--CCcCCCeEE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG--SGVPGKRVG 69 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~--~~~~~~~ig 69 (125)
|+.++|++++-..+ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ....++.++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 45666776654322 2899999999999999999999999999999999999998764321 112345799
Q ss_pred EEccCcccCCCCCHHHHHHHHHH-HhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 70 YMPQEIALYGEFSIKETMMYFGW-IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 70 ~v~Q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
|++|++.+++.+||.+|+.+... .++....+..+++.++++.++|+. .++.+.+
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 136 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSE 136 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhh
Confidence 99999999999999999987532 233344455667889999999964 3454443
No 66
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.91 E-value=2.7e-24 Score=153.26 Aligned_cols=110 Identities=24% Similarity=0.275 Sum_probs=84.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcc-cCCCCCHHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA-LYGEFSIKETMMYFGWI 93 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~ 93 (125)
+++|++++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++. .++.+|+.||+.+....
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~ 103 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLEN 103 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999987643222223467999999975 36678999999876544
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.+....+..+++.++++.++|+. .++.+.+|
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 135 (211)
T cd03225 104 LGLPEEEIEERVEEALELVGLEGLRDRSPFTL 135 (211)
T ss_pred cCCCHHHHHHHHHHHHHHcCcHhhhcCCcccC
Confidence 44344455567888999999964 34544443
No 67
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.5e-24 Score=150.48 Aligned_cols=103 Identities=24% Similarity=0.330 Sum_probs=92.9
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
.+.+||+++++|||||||||||++++|+..|+.|+|.++|..+..+. ..-|+|||++.++|.+++.||++|....
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-----aergvVFQ~~~LlPWl~~~dNvafgL~l 101 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AERGVVFQNEALLPWLNVIDNVAFGLQL 101 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----ccceeEeccCccchhhHHHHHHHHHHHh
Confidence 45899999999999999999999999999999999999998877643 3459999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc-cchhh
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS-QSRLV 121 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~-~~~~~ 121 (125)
.+.++.+..+++.+.+..+||.+ .++++
T Consensus 102 ~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i 130 (259)
T COG4525 102 RGIEKAQRREIAHQMLALVGLEGAEHKYI 130 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhCcccccccce
Confidence 99999999999999999999976 34544
No 68
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.91 E-value=2.7e-24 Score=153.39 Aligned_cols=109 Identities=27% Similarity=0.362 Sum_probs=85.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCC--CCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH-
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTK--GSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW- 92 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~--~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~- 92 (125)
++|++++|+||||||||||+++|+|+.+|++|+|.++|.++... .....++.++|++|++.+++.+|+.||+.+...
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 103 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIK 103 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHH
Confidence 89999999999999999999999999999999999999876421 111234679999999999999999999987543
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 93 IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.++....+..+++.++++.++++. .++.+.+|
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 136 (213)
T cd03262 104 VKGMSKAEAEERALELLEKVGLADKADAYPAQL 136 (213)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhhCcccc
Confidence 333444455667888999999965 35554443
No 69
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.91 E-value=1.8e-24 Score=167.78 Aligned_cols=124 Identities=22% Similarity=0.264 Sum_probs=95.6
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
|+.++|+++.-.++ +++||+++|+|||||||||||++|+|+++|++|+|.++|.++........++.+|||
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v 82 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence 35667777654332 289999999999999999999999999999999999999887653323345689999
Q ss_pred ccCcccCCCCCHHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 72 PQEIALYGEFSIKETMMYFGWIF----GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+|++.+++.+||.|++.+....+ .....+..+++.++++.+++.+ .++.+.+|
T Consensus 83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~L 140 (402)
T PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSL 140 (402)
T ss_pred ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhC
Confidence 99999999999999998753221 1113445678899999999976 46666554
No 70
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3e-24 Score=158.77 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=92.6
Q ss_pred Cccccchhhhhc---c--------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEE
Q psy340 1 MKTNTNTKKKKK---K--------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVG 69 (125)
Q Consensus 1 ~~~~~~~~~~~~---~--------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig 69 (125)
|+.++|++++-. + .+.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 345667766541 1 23999999999999999999999999999999999999998764322222346799
Q ss_pred EEccCcc-cCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 70 YMPQEIA-LYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 70 ~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
|++|++. .++.+|+.||+.+..........+..+++.++++.++|.. .++.+.+
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQN 142 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCccc
Confidence 9999974 6778899999987654434444555667889999999964 3454443
No 71
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=5.9e-25 Score=163.82 Aligned_cols=109 Identities=21% Similarity=0.287 Sum_probs=99.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC----cCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG----VPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~----~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
++|||++|+|-||||||||+|||++++.|++|+|.++|.++...+.. .+++++++|||.+.++|+.||.||+.|..
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGL 131 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGL 131 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcce
Confidence 89999999999999999999999999999999999999988764432 34568999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 92 WIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
...+.++.+.++++.++++.+||+. .++++++|
T Consensus 132 ev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eL 165 (386)
T COG4175 132 EVQGVPKAEREERALEALELVGLEGYADKYPNEL 165 (386)
T ss_pred eecCCCHHHHHHHHHHHHHHcCchhhhhcCcccc
Confidence 9999999999999999999999987 57777765
No 72
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.2e-24 Score=155.31 Aligned_cols=112 Identities=24% Similarity=0.282 Sum_probs=95.1
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCC-CCCCcCCCeEEEEccCc-ccCCCCCHHHHHHHH
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT-KGSGVPGKRVGYMPQEI-ALYGEFSIKETMMYF 90 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~-~~~~~~~~~ig~v~Q~~-~~~~~~tv~e~l~~~ 90 (125)
-.+++|++++|+|+||||||||+++++|+++|++|.|.++|.+... ......++++|||||+| ..+..-||.+.++|.
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg 104 (235)
T COG1122 25 LEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG 104 (235)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhc
Confidence 3458999999999999999999999999999999999999987652 22334578999999998 345556999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 91 GWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
....+.+.+++.+++.++++.+++.+ .++.+.+|
T Consensus 105 ~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~L 139 (235)
T COG1122 105 LENLGLPREEIEERVAEALELVGLEELLDRPPFNL 139 (235)
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCchhhccCCcccc
Confidence 99999988889999999999999976 56666554
No 73
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.91 E-value=6.6e-24 Score=151.76 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=83.7
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ..++.++|++|++.+++.+|+.||+.+.....
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~ 98 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNIGLGLHPG 98 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEEeccCccCCCCcHHHHHHhHhhcc
Confidence 3899999999999999999999999999999999999998764321 23467999999999999999999998653322
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.....+..+++.++++.++|++ .++.+.+|
T Consensus 99 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 129 (213)
T TIGR01277 99 LKLNAEQQEKVVDAAQQVGIADYLDRLPEQL 129 (213)
T ss_pred CCccHHHHHHHHHHHHHcCcHHHhhCCcccC
Confidence 1112233566788999999965 45555443
No 74
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=2.8e-24 Score=157.91 Aligned_cols=123 Identities=22% Similarity=0.274 Sum_probs=90.4
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|++++-.++ +++|++++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (258)
T PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLP 82 (258)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEc
Confidence 4455665543322 3899999999999999999999999999999999999997654322222345799999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+++.+|+.||+.+..........+..+.+.++++.++|.. .++.+.+|
T Consensus 83 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 135 (258)
T PRK13548 83 QHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQL 135 (258)
T ss_pred cCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccC
Confidence 99988888999999987543222223334556788999999964 34554443
No 75
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.5e-24 Score=160.08 Aligned_cols=124 Identities=16% Similarity=0.079 Sum_probs=94.6
Q ss_pred Cccccchhhhhcc-----------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCc---eeEEEcCccCCCCCCCcCCC
Q psy340 1 MKTNTNTKKKKKK-----------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNT---GEIWVLGGKPGTKGSGVPGK 66 (125)
Q Consensus 1 ~~~~~~~~~~~~~-----------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~---G~i~~~g~~~~~~~~~~~~~ 66 (125)
|++++|++++-.. .+++||+++|+||||||||||+++|+|+.+|++ |+|.++|.++........++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 3567777775421 239999999999999999999999999999987 89999998764322222346
Q ss_pred eEEEEccCcc-cCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 67 RVGYMPQEIA-LYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 67 ~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.+||+||++. .++..||.||+.+.....+....+..+++.++++.++|+. .++.+..|
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 144 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANL 144 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 7999999974 6778899999987655555555566678899999999975 35555443
No 76
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.5e-24 Score=159.13 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=87.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc-ccCCCCCHHHHHHHHHHHh
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI-ALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~-~~~~~~tv~e~l~~~~~~~ 94 (125)
++||+++|+||||||||||+++|+|+++|++|+|.++|.++........++.++|+||++ ..++.+||.||+.+.....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~ 110 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK 110 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC
Confidence 899999999999999999999999999999999999998775422222346799999997 4677889999998865555
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+....+..+++.++++.++|++ .++.+.+|
T Consensus 111 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13650 111 GIPHEEMKERVNEALELVGMQDFKEREPARL 141 (279)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 5555666678899999999975 35554443
No 77
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.91 E-value=8.3e-24 Score=156.25 Aligned_cols=109 Identities=24% Similarity=0.309 Sum_probs=84.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
++|++++|+||||||||||+++|+|+.+|++|+|.++|.++...... ..++.++|++|++.+++.+|+.||+.+...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~ 110 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLR 110 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999876432111 124579999999999999999999987543
Q ss_pred Hh-CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 93 IF-GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 93 ~~-~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.. .....+..+++.++++.++|.+ .++.+.+|
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 144 (269)
T PRK11831 111 EHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSEL 144 (269)
T ss_pred HccCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 32 2333444567788999999975 35555443
No 78
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.91 E-value=7.6e-24 Score=163.31 Aligned_cols=110 Identities=23% Similarity=0.321 Sum_probs=88.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCc----cCCCCCCC----cCCCeEEEEccCcccCCCCCHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG----KPGTKGSG----VPGKRVGYMPQEIALYGEFSIKET 86 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~----~~~~~~~~----~~~~~ig~v~Q~~~~~~~~tv~e~ 86 (125)
+++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++...... .+++.++||||++.+++++||.||
T Consensus 47 i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eN 126 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEEN 126 (382)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHH
Confidence 3899999999999999999999999999999999999985 33221111 123579999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 87 MMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+.+.....+.+..+..+++.++++.++|+. .++.+.+|
T Consensus 127 i~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~L 165 (382)
T TIGR03415 127 VAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGEL 165 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhC
Confidence 998765555556666778899999999975 45555544
No 79
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.1e-24 Score=154.77 Aligned_cols=122 Identities=23% Similarity=0.341 Sum_probs=91.2
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEEEE
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYM 71 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig~v 71 (125)
+.++|++++-..+ +++|++++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.++|+
T Consensus 4 l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 83 (241)
T PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83 (241)
T ss_pred EEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEe
Confidence 4566666654322 28999999999999999999999999999999999999987643221 1124579999
Q ss_pred ccCcccCCCCCHHHHHHHHHHHh-CCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 72 PQEIALYGEFSIKETMMYFGWIF-GMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
+|++.+++.+|+.||+.+..... .....+...++.++++.+++.. .++.+.+
T Consensus 84 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (241)
T PRK10895 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQS 137 (241)
T ss_pred ccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhh
Confidence 99999999999999998754332 2233445567888999999965 3444443
No 80
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=6.8e-24 Score=157.18 Aligned_cols=123 Identities=19% Similarity=0.223 Sum_probs=92.6
Q ss_pred ccccchhhhhc-cc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 2 KTNTNTKKKKK-KK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 2 ~~~~~~~~~~~-~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
+.++|++++-. +. +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|+
T Consensus 5 l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 84 (274)
T PRK13647 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLV 84 (274)
T ss_pred EEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEE
Confidence 45667766542 22 289999999999999999999999999999999999999876433222234579999
Q ss_pred ccCcc-cCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 72 PQEIA-LYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
||++. .++.+||.||+.+.....+....+..+++.++++.++|.. .++.+.+|
T Consensus 85 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 139 (274)
T PRK13647 85 FQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHL 139 (274)
T ss_pred ecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhC
Confidence 99973 4556899999987654444445555677889999999965 45555544
No 81
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.90 E-value=8.1e-24 Score=150.62 Aligned_cols=103 Identities=26% Similarity=0.458 Sum_probs=82.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++|++++|+||||||||||+++|+|+.+|++|+|.++|.++... ...++.++|++|++.+++.+|+.||+.+....++
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 101 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGALIEAPGFYPNLTARENLRLLARLLG 101 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999876432 1234579999999999999999999988654443
Q ss_pred CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 96 METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
. ..+++.++++.+++++ .++.+.+|
T Consensus 102 ~----~~~~~~~~l~~~~l~~~~~~~~~~L 127 (208)
T cd03268 102 I----RKKRIDEVLDVVGLKDSAKKKVKGF 127 (208)
T ss_pred C----cHHHHHHHHHHcCCHHHHhhhHhhC
Confidence 2 1345778899999965 35555443
No 82
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.90 E-value=1.4e-23 Score=153.10 Aligned_cols=123 Identities=24% Similarity=0.248 Sum_probs=91.8
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC--------CCc
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG--------SGV 63 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~--------~~~ 63 (125)
|+.++|+.++-..+ +++|++++|+||||||||||+++|+|+.+|++|+|.++|.++.... ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 35666776654322 2899999999999999999999999999999999999998764211 012
Q ss_pred CCCeEEEEccCcccCCCCCHHHHHHHHHH-HhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 64 PGKRVGYMPQEIALYGEFSIKETMMYFGW-IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 64 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
.++.++|++|++.+++.+|+.||+.+... .......+..+++.++++.++|.. .++.+.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 144 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRR 144 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhh
Confidence 24579999999999999999999987533 223334445567888999999965 3444444
No 83
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=7.5e-24 Score=157.38 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=93.8
Q ss_pred ccccchhhhhcc-----------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEE
Q psy340 2 KTNTNTKKKKKK-----------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGY 70 (125)
Q Consensus 2 ~~~~~~~~~~~~-----------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~ 70 (125)
+.++|++++-.. .+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGM 85 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEE
Confidence 456666665421 128999999999999999999999999999999999999987754322223467999
Q ss_pred EccCc-ccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 71 MPQEI-ALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 71 v~Q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
++|++ .+++..||.||+.+.....+.+..+..+++.++++.++|+. .++.+..
T Consensus 86 ~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 140 (279)
T PRK13635 86 VFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHR 140 (279)
T ss_pred EEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCccc
Confidence 99997 46777899999987655555555566678899999999965 3454443
No 84
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=8.8e-24 Score=150.31 Aligned_cols=119 Identities=19% Similarity=0.274 Sum_probs=91.1
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
|+.++|+++.-.++ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ...++.++|+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEe
Confidence 45667776654332 3899999999999999999999999999999999999998764322 1234679999
Q ss_pred ccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 72 PQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
+|++.+++.+|+.||+.+....++. ...+++.++++.++|.. .++.+.+
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~ 129 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQ 129 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhh
Confidence 9999889999999999886544432 23456788999999964 3444444
No 85
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.1e-23 Score=150.22 Aligned_cols=108 Identities=20% Similarity=0.222 Sum_probs=83.6
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
.+.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... .++.++|++|++.+++.+|+.||+.+....
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 97 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSMLFQENNLFAHLTVEQNVGLGLSP 97 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEEecccccCCCCcHHHHHhccccc
Confidence 348999999999999999999999999999999999999987643221 235799999999999999999999875321
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
......+..+++.++++.+++.+ .++.+.+
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 128 (211)
T cd03298 98 GLKLTAEDRQAIEVALARVGLAGLEKRLPGE 128 (211)
T ss_pred ccCccHHHHHHHHHHHHHcCCHHHHhCCccc
Confidence 11112334567888999999965 3444443
No 86
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.1e-23 Score=151.98 Aligned_cols=122 Identities=21% Similarity=0.257 Sum_probs=96.1
Q ss_pred Cccccchhhhhcccc-------------CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCC-CCCcCCC
Q psy340 1 MKTNTNTKKKKKKKK-------------KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTK-GSGVPGK 66 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~-------------~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~-~~~~~~~ 66 (125)
|++++|+.+.-.++. .+||++||+|+||||||||.++|+|+.+|++|+|.++|.+.... ......+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 466777766544433 89999999999999999999999999999999999999765432 1223457
Q ss_pred eEEEEccCc--ccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 67 RVGYMPQEI--ALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 67 ~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
.+.+||||| .+.|.+||.+.+.-+....+.+.. ++++.++++.+||+. .+|++.+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eL 142 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHEL 142 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhc
Confidence 899999998 688999999999987776665444 344999999999975 36766654
No 87
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.90 E-value=8.2e-24 Score=151.74 Aligned_cols=100 Identities=23% Similarity=0.360 Sum_probs=77.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC-cCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG-VPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
+.+||++||+||||||||||+++|+|+.+|++|+|.++|.++...... ..++.++|+||++.+++.+|+.||+.+....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~ 102 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYA 102 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhh
Confidence 389999999999999999999999999999999999999876432221 1245799999999999999999999876544
Q ss_pred hCCChHHHHHHHHHHHHhC-CCCc
Q psy340 94 FGMETPEIDDRLQFLLNFL-DLPS 116 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~-~L~~ 116 (125)
+. ..+..+++.++++.+ ++++
T Consensus 103 ~~--~~~~~~~~~~~l~~~~~l~~ 124 (222)
T cd03224 103 RR--RAKRKARLERVYELFPRLKE 124 (222)
T ss_pred cC--chhHHHHHHHHHHHHHhhhh
Confidence 32 223344566677776 3543
No 88
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.90 E-value=4.9e-24 Score=154.82 Aligned_cols=123 Identities=22% Similarity=0.250 Sum_probs=90.3
Q ss_pred Cccccchhhhhc-cc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC---CcCCCe
Q psy340 1 MKTNTNTKKKKK-KK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS---GVPGKR 67 (125)
Q Consensus 1 ~~~~~~~~~~~~-~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~---~~~~~~ 67 (125)
|+.++|++++-. ++ +++|++++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 456677776543 22 29999999999999999999999999999999999999987643211 112457
Q ss_pred EEEEccCcccCCCCCHHHHHHHHHH--------HhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 68 VGYMPQEIALYGEFSIKETMMYFGW--------IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 68 ig~v~Q~~~~~~~~tv~e~l~~~~~--------~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
++|++|++.+++.+|+.||+.+... .......+..+++.++++.++|.. .++.+.+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQ 145 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCccc
Confidence 9999999999999999999976321 111122344567888999999964 3444443
No 89
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.90 E-value=1.5e-23 Score=152.97 Aligned_cols=114 Identities=25% Similarity=0.274 Sum_probs=87.5
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCC-----ceeEEEcCccCCCC--CCCcC
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLN-----TGEIWVLGGKPGTK--GSGVP 64 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~-----~G~i~~~g~~~~~~--~~~~~ 64 (125)
|+.++|+.++-..+ +++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.++... .....
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 34556666553221 2899999999999999999999999999998 99999999876431 11123
Q ss_pred CCeEEEEccCcccCCCCCHHHHHHHHHHHhC-CChHHHHHHHHHHHHhCCCC
Q psy340 65 GKRVGYMPQEIALYGEFSIKETMMYFGWIFG-METPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 65 ~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~ 115 (125)
++.++|+||++.+++ .|+.||+.+.....+ ....+..+.+.++++.++|.
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 131 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALW 131 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 467999999998888 999999987654443 23445567788899999996
No 90
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2e-23 Score=155.59 Aligned_cols=109 Identities=24% Similarity=0.319 Sum_probs=86.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC--CcCCCeEEEEccCcc-cCCCCCHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS--GVPGKRVGYMPQEIA-LYGEFSIKETMMYFGW 92 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~--~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~ 92 (125)
++||++||+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.+|||||++. .+..+||.||+.+...
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~ 110 (287)
T PRK13637 31 EDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPI 110 (287)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHH
Confidence 9999999999999999999999999999999999999987654211 123468999999873 3345799999998665
Q ss_pred HhCCChHHHHHHHHHHHHhCCCC--c-cchhhhhc
Q psy340 93 IFGMETPEIDDRLQFLLNFLDLP--S-QSRLVKNL 124 (125)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~L~--~-~~~~~~~L 124 (125)
..+....+..+++.++++.++|+ + .++.+.+|
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~L 145 (287)
T PRK13637 111 NLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFEL 145 (287)
T ss_pred HCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccC
Confidence 55666666778889999999996 3 45555544
No 91
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=9e-24 Score=156.53 Aligned_cols=124 Identities=24% Similarity=0.240 Sum_probs=94.2
Q ss_pred Cccccchhhhhc-cc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEE
Q psy340 1 MKTNTNTKKKKK-KK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVG 69 (125)
Q Consensus 1 ~~~~~~~~~~~~-~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig 69 (125)
|+.++|+.|+-. ++ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 566777777653 22 29999999999999999999999999999999999999987643211 12346799
Q ss_pred EEccCcc-cCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 70 YMPQEIA-LYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 70 ~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++|++. .+...|+.||+.+....++....+..+++.++++.++|.. .++.+.+|
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 137 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTL 137 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccC
Confidence 9999975 3666899999987655444555566677889999999965 35555443
No 92
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.90 E-value=1.6e-23 Score=152.22 Aligned_cols=124 Identities=18% Similarity=0.175 Sum_probs=91.1
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC-cCCCeEEE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG-VPGKRVGY 70 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ig~ 70 (125)
|+.++|+.++-..+ +.+||+++|+|||||||||||++|+|+.+|++|+|.++|.++...... ..++.++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 34556666554322 389999999999999999999999999999999999999765432211 12346999
Q ss_pred EccCcccCCCCCHHHHHHHHHHHh--------CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 71 MPQEIALYGEFSIKETMMYFGWIF--------GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 71 v~Q~~~~~~~~tv~e~l~~~~~~~--------~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
++|++.+++.+|+.||+.+..... .....+..+++.++++.++++. .++.+.+|
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 144 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLL 144 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhC
Confidence 999999999999999998753211 1122344567889999999965 35555443
No 93
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.90 E-value=7.9e-24 Score=152.47 Aligned_cols=100 Identities=27% Similarity=0.309 Sum_probs=80.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC-----cCCceeEEEcCccCCCCC--CCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR-----RLNTGEIWVLGGKPGTKG--SGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~-----~~~~G~i~~~g~~~~~~~--~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++||+++|+||||||||||+++|+|+. +|++|+|.++|.++.... ....++.++|++|++.++ .+||.||+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~ 102 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVA 102 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHH
Confidence 899999999999999999999999999 999999999998764322 112346799999999888 789999998
Q ss_pred HHHHHhCCCh-HHHHHHHHHHHHhCCCCc
Q psy340 89 YFGWIFGMET-PEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 89 ~~~~~~~~~~-~~~~~~~~~~l~~~~L~~ 116 (125)
+....++... .+..+++.++++.+++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 131 (227)
T cd03260 103 YGLRLHGIKLKEELDERVEEALRKAALWD 131 (227)
T ss_pred hHHHhcCCCcHHHHHHHHHHHHHHcCCCh
Confidence 7654443322 234567888999999965
No 94
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.4e-23 Score=151.83 Aligned_cols=121 Identities=19% Similarity=0.202 Sum_probs=89.1
Q ss_pred Cccccchhhhhcc-------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEcc
Q psy340 1 MKTNTNTKKKKKK-------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73 (125)
Q Consensus 1 ~~~~~~~~~~~~~-------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q 73 (125)
|+.++|+++.-.. .+.+|++++|+||||||||||+++|+|+.+|++|+|.++|.++..... ..+.++|++|
T Consensus 1 ~l~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q 78 (232)
T PRK10771 1 MLKLTDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSMLFQ 78 (232)
T ss_pred CeEEEEEEEEECCccceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEEEec
Confidence 3455566555432 238999999999999999999999999999999999999987643211 2357999999
Q ss_pred CcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 74 EIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
++.+++.+|+.||+.+.............+++.++++.++|+. .++.+.+
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 129 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQ 129 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCccc
Confidence 9999999999999986432111112334567888999999964 3554443
No 95
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.5e-23 Score=155.58 Aligned_cols=123 Identities=17% Similarity=0.257 Sum_probs=92.6
Q ss_pred ccccchhhhhc-cc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 2 KTNTNTKKKKK-KK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 2 ~~~~~~~~~~~-~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
+.++|++|+-. ++ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|+
T Consensus 4 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 83 (277)
T PRK13652 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLV 83 (277)
T ss_pred EEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEE
Confidence 56677777642 22 299999999999999999999999999999999999999876432222234679999
Q ss_pred ccCcc-cCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 72 PQEIA-LYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+|++. .+...||.||+.+.....+....+..+++.++++.++|.+ .++.+.+|
T Consensus 84 ~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (277)
T PRK13652 84 FQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHL 138 (277)
T ss_pred ecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 99973 3446799999987654444555555677889999999965 35555443
No 96
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.4e-23 Score=151.96 Aligned_cols=114 Identities=21% Similarity=0.149 Sum_probs=87.3
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCCCCCCcCCCe
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGTKGSGVPGKR 67 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~ 67 (125)
+.++|++++-..+ +++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++........++.
T Consensus 4 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRR 83 (250)
T ss_pred EEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhcc
Confidence 5566666653322 389999999999999999999999999874 69999999987643222233467
Q ss_pred EEEEccCcccCCCCCHHHHHHHHHHHhCC--ChHHHHHHHHHHHHhCCCC
Q psy340 68 VGYMPQEIALYGEFSIKETMMYFGWIFGM--ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 68 ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~L~ 115 (125)
++|++|++.+++.+|+.||+.+....... ...+..+.+.++++.++|.
T Consensus 84 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 133 (250)
T PRK14247 84 VQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLW 133 (250)
T ss_pred EEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999888999999999876443322 2344556788899999984
No 97
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.3e-23 Score=152.42 Aligned_cols=109 Identities=22% Similarity=0.284 Sum_probs=83.1
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC---CCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG---SGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~---~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
+++|++++|+||||||||||+++|+|+.+|++|+|.++|.++.... ....++.++|++|++.+++.+||.||+.+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 103 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR 103 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhh
Confidence 3999999999999999999999999999999999999998764322 1122457999999999999999999997643
Q ss_pred HH--------hCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 92 WI--------FGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 92 ~~--------~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
.. .+....+..+++.++++.++|.. .++.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (241)
T cd03256 104 LGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQ 144 (241)
T ss_pred cccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCccc
Confidence 21 11122344567888999999964 3444443
No 98
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.90 E-value=3.4e-23 Score=158.46 Aligned_cols=109 Identities=26% Similarity=0.318 Sum_probs=86.0
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC----CCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG----SGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~----~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
.+++||+++|+|||||||||||++|+|+.+|++|+|.++|.++.... ....++.++|++|++.+++++||.||+.+
T Consensus 19 ~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 98 (354)
T TIGR02142 19 TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRY 98 (354)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHH
Confidence 34899999999999999999999999999999999999998764321 11234679999999999999999999987
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 90 FGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
..... ...+..+++.++++.++|.+ .++.+.+|
T Consensus 99 ~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 132 (354)
T TIGR02142 99 GMKRA--RPSERRISFERVIELLGIGHLLGRLPGRL 132 (354)
T ss_pred Hhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhC
Confidence 54322 22344567889999999975 45655544
No 99
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.4e-23 Score=152.49 Aligned_cols=108 Identities=20% Similarity=0.294 Sum_probs=83.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCC---C---CCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTK---G---SGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~---~---~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... . ....++.++|++|++.+++.+|+.||+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~ 105 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIE 105 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999865210 0 01124579999999999999999999975
Q ss_pred H-HHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 90 F-GWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 90 ~-~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
. ....+....+..+++.++++.++++. .++.+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 141 (242)
T PRK11124 106 APCRVLGLSKDQALARAEKLLERLRLKPYADRFPLH 141 (242)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 3 33334444455667888999999965 3554443
No 100
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.2e-23 Score=154.06 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=90.5
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC--CcCCCeEE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS--GVPGKRVG 69 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~--~~~~~~ig 69 (125)
|+.++|++++-.++ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.++
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 56677777664432 29999999999999999999999999999999999999987632111 12245799
Q ss_pred EEccCccc-CCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 70 YMPQEIAL-YGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 70 ~v~Q~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
|++|++.. +...++.+|+.+.....+....+..+++.++++.+++.+ .++.+.+
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQC 136 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchh
Confidence 99999753 345679999987654444444555667888999999865 3444443
No 101
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.6e-23 Score=151.29 Aligned_cols=114 Identities=22% Similarity=0.280 Sum_probs=86.3
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCC--CCCCcCC
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGT--KGSGVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~--~~~~~~~ 65 (125)
+.++|++++-.++ +.+||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ......+
T Consensus 5 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (253)
T PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVR 84 (253)
T ss_pred EEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHh
Confidence 4566776653322 389999999999999999999999999987 49999999987642 1111234
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHHHHhCC--ChHHHHHHHHHHHHhCCCC
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGM--ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~L~ 115 (125)
+.++|++|++.+++.+|+.||+.+.....+. +..+..+++.++++.+++.
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 136 (253)
T PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALW 136 (253)
T ss_pred hceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCc
Confidence 5799999999999999999999876543332 2344456678889998873
No 102
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=150.69 Aligned_cols=80 Identities=24% Similarity=0.379 Sum_probs=70.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC-cCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG-VPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
.++||+++|+|||||||||||++|+|+.++.+|+|.|+|+|+....+. ..+..|+||||...+|+.+||+||+.+....
T Consensus 26 v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~ 105 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYA 105 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhc
Confidence 389999999999999999999999999999999999999998875433 3356799999999999999999999986544
Q ss_pred h
Q psy340 94 F 94 (125)
Q Consensus 94 ~ 94 (125)
.
T Consensus 106 ~ 106 (237)
T COG0410 106 R 106 (237)
T ss_pred c
Confidence 3
No 103
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.89 E-value=1e-22 Score=147.86 Aligned_cols=108 Identities=26% Similarity=0.415 Sum_probs=84.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc-cCcccCCCCCHHHHHHHHHHHh
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP-QEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~-Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ...++.++|++ |.+.+++.+|+.|++.+....+
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~ 123 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR-KKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY 123 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc-hhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc
Confidence 899999999999999999999999999999999999987653322 22346799998 5567788999999998765555
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+....+..+++.++++.+++++ .++.+.+|
T Consensus 124 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 154 (236)
T cd03267 124 DLPPARFKKRLDELSELLDLEELLDTPVRQL 154 (236)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhcCChhhC
Confidence 5445555667888999999965 34444443
No 104
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.89 E-value=5.3e-23 Score=147.74 Aligned_cols=109 Identities=25% Similarity=0.281 Sum_probs=86.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
+++|++++|+||||||||||+++|+|+++|++|+|.++|.++...... ..++.++|++|++.+++.+|+.||+.+..
T Consensus 28 i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~ 107 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL 107 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHH
Confidence 389999999999999999999999999999999999999876432111 12467999999999999899999998865
Q ss_pred HHhC-CChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 92 WIFG-METPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 92 ~~~~-~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
..+. ....+..+++.++++.++|.+ .++.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 141 (220)
T TIGR02982 108 ELQPNLSYQEARERARAMLEAVGLGDHLDYYPHN 141 (220)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCChhhhhcChhh
Confidence 5443 344555677899999999965 3454444
No 105
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.89 E-value=4.9e-23 Score=151.99 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=83.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcc--cCCCCCHHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA--LYGEFSIKETMMYFGWI 93 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~--~~~~~tv~e~l~~~~~~ 93 (125)
++||+++|+|||||||||||++|+|+++|++|+|.++|.++........++.++|++|++. +++.+|+.+++.+....
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 116 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRL 116 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999987643222223457999999974 56788999999875544
Q ss_pred h-CCChHHHHHHHHHHHHhCCCC-c-cchhhhh
Q psy340 94 F-GMETPEIDDRLQFLLNFLDLP-S-QSRLVKN 123 (125)
Q Consensus 94 ~-~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~ 123 (125)
. .....+..+.+.++++.++|. . .++.+.+
T Consensus 117 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 149 (267)
T PRK15112 117 NTDLEPEQREKQIIETLRQVGLLPDHASYYPHM 149 (267)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCChHHHhcCchh
Confidence 3 233445556788999999994 3 3444443
No 106
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.89 E-value=5.5e-23 Score=147.81 Aligned_cols=101 Identities=25% Similarity=0.282 Sum_probs=79.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcC--c--cCCCCCCC----cCCCeEEEEccCcccCCCCCHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG--G--KPGTKGSG----VPGKRVGYMPQEIALYGEFSIKETM 87 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g--~--~~~~~~~~----~~~~~ig~v~Q~~~~~~~~tv~e~l 87 (125)
.+||+++|+||||||||||+++|+|+++|++|+|.+++ . ++...... .+++.++|++|++.+++.+|+.|++
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 111 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVV 111 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHH
Confidence 89999999999999999999999999999999999984 2 32211111 1235699999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCCc
Q psy340 88 MYFGWIFGMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
.+.....+....+..+++.++++.+++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 140 (224)
T TIGR02324 112 AEPLLERGVPREAARARARELLARLNIPE 140 (224)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence 87544444444455667888999999964
No 107
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.89 E-value=7.4e-23 Score=147.20 Aligned_cols=108 Identities=27% Similarity=0.319 Sum_probs=80.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC---CcCCCeEEEEccCc--ccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS---GVPGKRVGYMPQEI--ALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~---~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~ 90 (125)
++||+++|+|||||||||||++|+|+.+|++|+|.++|.++..... ...++.++|++|++ .+++.+|+.+|+.+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~ 108 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEP 108 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHH
Confidence 8999999999999999999999999999999999999987654221 12346799999998 467789999999876
Q ss_pred HHHhCCCh-HHHHHH-HHHHHHhCCCC-c-cchhhhh
Q psy340 91 GWIFGMET-PEIDDR-LQFLLNFLDLP-S-QSRLVKN 123 (125)
Q Consensus 91 ~~~~~~~~-~~~~~~-~~~~l~~~~L~-~-~~~~~~~ 123 (125)
........ .+..+. +.++++.+++. . .++.+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 145 (228)
T cd03257 109 LRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHE 145 (228)
T ss_pred HHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchh
Confidence 44433222 222222 35788999984 3 3444444
No 108
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=3.9e-23 Score=146.57 Aligned_cols=117 Identities=17% Similarity=0.124 Sum_probs=88.3
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
|+.++|++++-..+ +++||+++|+||||||||||+++|+|+.+|++|+|+++|.++... ....++.++|+
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~-~~~~~~~i~~~ 79 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD-LCTYQKQLCFV 79 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC-HHHHHhheEEe
Confidence 55677777664332 289999999999999999999999999999999999999876432 11234679999
Q ss_pred ccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 72 PQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
+|++.+++.+||.+|+.+..... .. ...+.++++.+++++ .++.+..
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~ 127 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFS---PG--AVGITELCRLFSLEHLIDYPCGL 127 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcC---cc--hHHHHHHHHHcCCchhhhCChhh
Confidence 99988888999999998753221 11 246778889888864 3444433
No 109
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.89 E-value=5.5e-23 Score=150.77 Aligned_cols=122 Identities=19% Similarity=0.272 Sum_probs=91.2
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCC----------C--
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTK----------G-- 60 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~----------~-- 60 (125)
+.++|++++-..+ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... .
T Consensus 6 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 85 (257)
T PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKN 85 (257)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccch
Confidence 4556666554322 289999999999999999999999999999999999999765320 0
Q ss_pred -CCcCCCeEEEEccCcccCCCCCHHHHHHHHH-HHhCCChHHHHHHHHHHHHhCCCCcc--chhhhh
Q psy340 61 -SGVPGKRVGYMPQEIALYGEFSIKETMMYFG-WIFGMETPEIDDRLQFLLNFLDLPSQ--SRLVKN 123 (125)
Q Consensus 61 -~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~--~~~~~~ 123 (125)
....++.++|++|++.+++.+|+.||+.+.. ..+.....+..+++.++++.+++... ++.+..
T Consensus 86 ~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 152 (257)
T PRK10619 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVH 152 (257)
T ss_pred HHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCccc
Confidence 0122467999999999999999999998643 23344445556778899999999652 444443
No 110
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.89 E-value=1.3e-23 Score=163.51 Aligned_cols=110 Identities=25% Similarity=0.289 Sum_probs=90.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
+.+||++||+|+||||||||+++|.|+++|++|+|.++|+.+.-..+ +..+..||+|+|++.+++.+||.||+.+....
T Consensus 27 v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~ 106 (501)
T COG3845 27 VKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEP 106 (501)
T ss_pred ecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcc
Confidence 48999999999999999999999999999999999999987643322 23456799999999999999999999986532
Q ss_pred ---hCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 94 ---FGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 94 ---~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
......+.++++.++.+.+||+- .++.+.+|
T Consensus 107 ~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dL 141 (501)
T COG3845 107 SKGGLIDRRQARARIKELSERYGLPVDPDAKVADL 141 (501)
T ss_pred ccccccCHHHHHHHHHHHHHHhCCCCCccceeecC
Confidence 12456788899999999999974 56665554
No 111
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.89 E-value=2.5e-23 Score=165.13 Aligned_cols=124 Identities=22% Similarity=0.304 Sum_probs=93.3
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC-cCCCeEEE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG-VPGKRVGY 70 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ig~ 70 (125)
|+.++|++|.-.++ +++||++||+|||||||||||++|+|+.+|++|+|.++|.++...... ..++.++|
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 83 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 35666776654332 289999999999999999999999999999999999999876432111 12357999
Q ss_pred EccCcccCCCCCHHHHHHHHHHHh---C-CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 71 MPQEIALYGEFSIKETMMYFGWIF---G-METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 71 v~Q~~~~~~~~tv~e~l~~~~~~~---~-~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
++|++.+++.+||.||+.+....+ . ....+..+++.++++.++|.+ .++.+.+|
T Consensus 84 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 142 (501)
T PRK10762 84 IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGEL 142 (501)
T ss_pred EEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhC
Confidence 999999999999999998754321 1 223444567889999999975 46666554
No 112
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.9e-23 Score=152.09 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=91.5
Q ss_pred ccccchhhhhcc-----------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEE
Q psy340 2 KTNTNTKKKKKK-----------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGY 70 (125)
Q Consensus 2 ~~~~~~~~~~~~-----------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~ 70 (125)
+.++|+.++-.. .+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|
T Consensus 8 l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 87 (269)
T PRK13648 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGI 87 (269)
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeE
Confidence 456666665432 128999999999999999999999999999999999999987643222223467999
Q ss_pred EccCcc-cCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 71 MPQEIA-LYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 71 v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
++|++. .++..++.+|+.+.....+....+..+++.++++.+++.+ .++.+.+
T Consensus 88 v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (269)
T PRK13648 88 VFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNA 142 (269)
T ss_pred EEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCccc
Confidence 999984 6777899999987654444444555667888999999864 3444443
No 113
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.9e-23 Score=156.33 Aligned_cols=104 Identities=21% Similarity=0.329 Sum_probs=82.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC----CCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG----SGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~----~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||+++|+|||||||||||++|+|+.+|++|+|.++|.++.... ....++.++|+||++.+++++||.||+.+.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 100 (352)
T PRK11144 21 LPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYG 100 (352)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhh
Confidence 4899999999999999999999999999999999999998764311 112246799999999999999999999875
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 91 GWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.. ....+++.++++.++|++ .++.+.+|
T Consensus 101 ~~------~~~~~~~~~~l~~~gl~~~~~~~~~~L 129 (352)
T PRK11144 101 MA------KSMVAQFDKIVALLGIEPLLDRYPGSL 129 (352)
T ss_pred hh------hhhHHHHHHHHHHcCCchhhhCCcccC
Confidence 32 122456788999999975 45555544
No 114
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.9e-23 Score=154.85 Aligned_cols=109 Identities=21% Similarity=0.204 Sum_probs=85.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCC------------------------CCCcCCCeEEEE
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTK------------------------GSGVPGKRVGYM 71 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~------------------------~~~~~~~~ig~v 71 (125)
++||+++|+||||||||||+++|+|+++|++|+|.++|.+.... .....++.+|||
T Consensus 31 ~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v 110 (305)
T PRK13651 31 NQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVV 110 (305)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEE
Confidence 89999999999999999999999999999999999987654210 011234679999
Q ss_pred ccCc-ccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 72 PQEI-ALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
||++ ..+...||.||+.+.....+.+..+..+++.++++.++|+ + .++.+.+|
T Consensus 111 ~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 166 (305)
T PRK13651 111 FQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFEL 166 (305)
T ss_pred eeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhC
Confidence 9986 3344579999999876655666667778899999999995 4 45665554
No 115
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.89 E-value=7.1e-23 Score=144.98 Aligned_cols=103 Identities=22% Similarity=0.310 Sum_probs=81.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ...++.++|++|++.+++.+|+.+|+.+......
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYLGHLPGLKPELSALENLHFWAAIHG 102 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEeccCcccccCCcHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999998764322 1234679999999888888999999987654433
Q ss_pred CChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 96 METPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
. + .+++.++++.+++.+ .++.+.+
T Consensus 103 ~---~-~~~~~~~l~~~~l~~~~~~~~~~ 127 (198)
T TIGR01189 103 G---A-QRTIEDALAAVGLTGFEDLPAAQ 127 (198)
T ss_pred C---c-HHHHHHHHHHcCCHHHhcCChhh
Confidence 1 1 345778899999964 3444443
No 116
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.89 E-value=4.4e-23 Score=148.76 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=87.0
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+..+|+++.-.++ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++
T Consensus 8 i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 87 (225)
T PRK10247 8 LQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCA 87 (225)
T ss_pred EEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEe
Confidence 4456666544322 2899999999999999999999999999999999999997764322222346799999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-c-cchhhhh
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP-S-QSRLVKN 123 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~ 123 (125)
|++.+++ .|+.||+.+....+... ...+++.++++.+++. . .++.+.+
T Consensus 88 q~~~l~~-~tv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~ 137 (225)
T PRK10247 88 QTPTLFG-DTVYDNLIFPWQIRNQQ--PDPAIFLDDLERFALPDTILTKNIAE 137 (225)
T ss_pred ccccccc-ccHHHHHHhHHhhcCCC--hHHHHHHHHHHHcCCChHHhcCCccc
Confidence 9988887 49999998754443321 1235677899999995 2 3444443
No 117
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.8e-22 Score=146.11 Aligned_cols=107 Identities=28% Similarity=0.386 Sum_probs=85.7
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++|++++|+||||||||||+++|+|+.+|++|+|.++|.++..... .++.++|++|++.+++.+|+.+|+.+....+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~ 100 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTVFQNYALFPHLTVFENIAFGLRLK 100 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEEecccccCCCCcHHHHHHHHHHhc
Confidence 48999999999999999999999999999999999999987653221 2457999999999998999999998765544
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
+.......+++.++++.+++.+ .++.+.+
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 130 (232)
T cd03300 101 KLPKAEIKERVAEALDLVQLEGYANRKPSQ 130 (232)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCChhh
Confidence 4444445567788999999965 4554443
No 118
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.89 E-value=4.5e-23 Score=146.60 Aligned_cols=103 Identities=23% Similarity=0.256 Sum_probs=79.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcc-cCCCCCHHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA-LYGEFSIKETMMYFGWI 93 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~ 93 (125)
+++||+++|+|||||||||||++|+|+.+|++|+|.++|.++.. ...++.++|++|++. .+..+|+.||+.+....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~ 99 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKE 99 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEecChhhhhhhccHHHHHhhhhhh
Confidence 48999999999999999999999999999999999999977532 123457999999974 34467999999875433
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.. . ..+++.++++.++|.+ .++.+.+|
T Consensus 100 ~~--~--~~~~~~~~l~~~~l~~~~~~~~~~L 127 (205)
T cd03226 100 LD--A--GNEQAETVLKDLDLYALKERHPLSL 127 (205)
T ss_pred cC--c--cHHHHHHHHHHcCCchhcCCCchhC
Confidence 32 1 1356788999999975 45555543
No 119
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.2e-23 Score=152.49 Aligned_cols=124 Identities=19% Similarity=0.245 Sum_probs=91.5
Q ss_pred Cccccchhhhhc-cc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC--CcCCCeE
Q psy340 1 MKTNTNTKKKKK-KK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS--GVPGKRV 68 (125)
Q Consensus 1 ~~~~~~~~~~~~-~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~--~~~~~~i 68 (125)
|+.++|+.++-. ++ +.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 456677766542 21 29999999999999999999999999999999999999987632111 1234679
Q ss_pred EEEccCcc-cCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 69 GYMPQEIA-LYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 69 g~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+|++|++. .+...||.||+.+.....+....+..+++.++++.++|.. .++.+.+|
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 138 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHL 138 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhC
Confidence 99999973 3345799999987543334444555677889999999965 45555544
No 120
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.89 E-value=8e-23 Score=155.23 Aligned_cols=109 Identities=21% Similarity=0.320 Sum_probs=87.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCCeEEEEccCc--ccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKRVGYMPQEI--ALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~ 90 (125)
.+||++||+|+||||||||+++|+|+.+|++|+|.++|.++...... ..++.++||||++ .+++.+|+.+++.+.
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~ 124 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEP 124 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999887543211 1245799999997 588899999999986
Q ss_pred HHHh--CCChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 91 GWIF--GMETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 91 ~~~~--~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
...+ .....+..+++.++++.++|. + .++.+.+|
T Consensus 125 l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 125 LRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccC
Confidence 5443 345566677888999999994 2 35555543
No 121
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.6e-23 Score=152.35 Aligned_cols=123 Identities=20% Similarity=0.285 Sum_probs=89.9
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
|+.++|++++-.++ +++|++++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 35667776653322 389999999999999999999999999999999999999765432212234579999
Q ss_pred ccCcccCCCCCHHHHHHHHHH----HhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 72 PQEIALYGEFSIKETMMYFGW----IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
+|++.+++.+|+.||+.+... .++....+..+++.++++.++|+. .++.+.+
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 138 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTD 138 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCccc
Confidence 999988888999999987421 122222334566788999999964 3444443
No 122
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.6e-23 Score=152.73 Aligned_cols=109 Identities=23% Similarity=0.246 Sum_probs=85.2
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC----CcCCCeEEEEccCc--ccCCCCCHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS----GVPGKRVGYMPQEI--ALYGEFSIKETMM 88 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~----~~~~~~ig~v~Q~~--~~~~~~tv~e~l~ 88 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.||||||++ .+++ .|+.||+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~ 108 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREII 108 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHH
Confidence 38999999999999999999999999999999999999987643211 12346799999986 3444 59999998
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 89 YFGWIFGMETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
+.....+....+..+++.++++.+||. . .++.+.+|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 146 (286)
T PRK13646 109 FGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQM 146 (286)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence 865544555566677889999999996 3 34555443
No 123
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.89 E-value=9.4e-23 Score=150.28 Aligned_cols=108 Identities=21% Similarity=0.322 Sum_probs=82.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCCeEEEEccCc--ccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKRVGYMPQEI--ALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~ 90 (125)
++||+++|+|||||||||||++|+|+.+|++|+|.++|.++...... ..++.++|++|++ .+++.+|+.||+.+.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 114 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEP 114 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999876542211 1245799999997 466789999999865
Q ss_pred HHHh-CCChHHHHHHHHHHHHhCCCC-c-cchhhhh
Q psy340 91 GWIF-GMETPEIDDRLQFLLNFLDLP-S-QSRLVKN 123 (125)
Q Consensus 91 ~~~~-~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~ 123 (125)
.... .....+..+++.++++.++|. . .++.+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 150 (265)
T TIGR02769 115 LRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQ 150 (265)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhh
Confidence 4322 333344556788999999995 3 3444444
No 124
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.4e-23 Score=153.50 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=85.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCC----CCCcCCCeEEEEccCc--ccCCCCCHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTK----GSGVPGKRVGYMPQEI--ALYGEFSIKETMMY 89 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~----~~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~ 89 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... .....++.+|||||++ .++ ..||.||+.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~ 109 (290)
T PRK13634 31 PSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICF 109 (290)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHH
Confidence 99999999999999999999999999999999999999876421 1112345799999986 344 5799999998
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 90 FGWIFGMETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
.....+.+..+..+++.++++.++|+ . .++.+.+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 146 (290)
T PRK13634 110 GPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFEL 146 (290)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccC
Confidence 76555555666667889999999996 4 35555544
No 125
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.6e-22 Score=146.63 Aligned_cols=107 Identities=21% Similarity=0.362 Sum_probs=85.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... .++.++|++|++.+++.+|+.||+.+.....
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 99 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYVPQNYALFPHMTVYKNIAYGLKKR 99 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEEeecCccCCCccHHHHHHHHHHHc
Confidence 38999999999999999999999999999999999999987643221 2467999999999999999999998765444
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
+....+..+.+.++++.++|.. .++.+.+
T Consensus 100 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 129 (235)
T cd03299 100 KVDKKEIERKVLEIAEMLGIDHLLNRKPET 129 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHHhcCccc
Confidence 4444555667888999999964 3444443
No 126
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=7e-23 Score=151.94 Aligned_cols=108 Identities=16% Similarity=0.156 Sum_probs=85.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcc-cCCCCCHHHHHHHHHHHh
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA-LYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~ 94 (125)
.+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++. .++..||.||+.+.....
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~ 110 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ 110 (277)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc
Confidence 9999999999999999999999999999999999999987654222223467999999974 677789999998754444
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
+....+..+++.++++.++|.. .++.+..
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (277)
T PRK13642 111 GIPREEMIKRVDEALLAVNMLDFKTREPAR 140 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhhCCccc
Confidence 4445555677889999999965 3444433
No 127
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.8e-23 Score=152.85 Aligned_cols=108 Identities=21% Similarity=0.216 Sum_probs=85.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC----CCcCCCeEEEEccCc--ccCCCCCHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG----SGVPGKRVGYMPQEI--ALYGEFSIKETMMY 89 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~----~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~ 89 (125)
++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ....++.+|||||++ .+++ .||.||+.+
T Consensus 30 ~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~ 108 (288)
T PRK13643 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAF 108 (288)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHh
Confidence 999999999999999999999999999999999999998764211 112346799999987 4554 699999998
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 90 FGWIFGMETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
....++.+..+..+++.++++.++|. . .++.+..|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L 145 (288)
T PRK13643 109 GPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFEL 145 (288)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccC
Confidence 76555556666778889999999995 3 35555443
No 128
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3e-23 Score=152.93 Aligned_cols=108 Identities=22% Similarity=0.334 Sum_probs=82.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH-h
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI-F 94 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~-~ 94 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++.+|+.||+.+.... .
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 114 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWH 114 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCccccc
Confidence 899999999999999999999999999999999999998764322222345799999998888899999999864311 1
Q ss_pred ---CCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 95 ---GMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 95 ---~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
........+++.++++.+++++ .++.+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 147 (265)
T PRK10575 115 GALGRFGAADREKVEEAISLVGLKPLAHRLVDS 147 (265)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCHHHhcCCccc
Confidence 1112334567888999999964 3444443
No 129
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=1.1e-22 Score=145.62 Aligned_cols=116 Identities=18% Similarity=0.266 Sum_probs=88.2
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|+++.-..+ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ..++.++|++
T Consensus 12 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~~~~ 88 (214)
T PRK13543 12 LAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMAYLG 88 (214)
T ss_pred EEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceEEee
Confidence 4566776654322 299999999999999999999999999999999999999876432 1235699999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
|++.+++.+|+.||+.+....++. ...+.+.++++.++|+. .++.+.+
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQ 137 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhh
Confidence 999888889999999876544332 22345677889999864 3444443
No 130
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.89 E-value=3.2e-23 Score=153.64 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=90.4
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCC--------ceeEEEcCccCCCCCCCc
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLN--------TGEIWVLGGKPGTKGSGV 63 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~--------~G~i~~~g~~~~~~~~~~ 63 (125)
|+.++|++++..++ +.+|++++|+||||||||||+++|+|+.+|+ +|+|.++|.++.......
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 67788888765443 3999999999999999999999999999998 999999998764322222
Q ss_pred CCCeEEEEccCcccCCCCCHHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 64 PGKRVGYMPQEIALYGEFSIKETMMYFGWIF----GMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 64 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
.++.++|++|++.+++.+|+.||+.+..... .....+..+++.++++.++++. .++.+.+
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTT 145 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCccc
Confidence 2346899999987666789999998743211 1112334566788999999965 3444443
No 131
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6e-23 Score=150.16 Aligned_cols=123 Identities=20% Similarity=0.257 Sum_probs=88.8
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEEEE
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYM 71 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig~v 71 (125)
+.++|+.++-..+ +++|++++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...+..++|+
T Consensus 6 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (255)
T PRK11300 6 LSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRT 85 (255)
T ss_pred EEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEe
Confidence 4556666654332 28999999999999999999999999999999999999987654221 1123468999
Q ss_pred ccCcccCCCCCHHHHHHHHHHH----------hCC-----ChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 72 PQEIALYGEFSIKETMMYFGWI----------FGM-----ETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~----------~~~-----~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
||++.+++.+|+.||+.+.... +.. ...+..+.+.++++.++|.+ .++.+.+|
T Consensus 86 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 154 (255)
T PRK11300 86 FQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNL 154 (255)
T ss_pred ccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhC
Confidence 9999999999999999874321 110 11123456788899999965 35555443
No 132
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.89 E-value=5.3e-23 Score=150.80 Aligned_cols=109 Identities=19% Similarity=0.248 Sum_probs=82.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH-H
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW-I 93 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~-~ 93 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++.+|+.||+.+... .
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 103 (256)
T TIGR03873 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPH 103 (256)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhh
Confidence 389999999999999999999999999999999999999876542222234579999999888888999999987421 1
Q ss_pred ---hCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 94 ---FGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 94 ---~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
+.....+..+++.++++.+++.+ .++.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (256)
T TIGR03873 104 RSLWAGDSPHDAAVVDRALARTELSHLADRDMST 137 (256)
T ss_pred hhhccCCCHHHHHHHHHHHHHcCcHhhhcCCccc
Confidence 11222334457888999999964 3454443
No 133
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=8e-23 Score=152.35 Aligned_cols=109 Identities=19% Similarity=0.164 Sum_probs=84.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC----CCcCCCeEEEEccCcc-cCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG----SGVPGKRVGYMPQEIA-LYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~----~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~ 90 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ....++.++|++|++. .+..+|+.||+.+.
T Consensus 31 ~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 110 (287)
T PRK13641 31 EEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG 110 (287)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHH
Confidence 999999999999999999999999999999999999998764211 1122457999999972 23357999999876
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 91 GWIFGMETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
...+.....+..+++.++++.++|+ . .++.+.+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 146 (287)
T PRK13641 111 PKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFEL 146 (287)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccC
Confidence 5444444556667889999999996 3 35555544
No 134
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.5e-23 Score=163.82 Aligned_cols=124 Identities=27% Similarity=0.268 Sum_probs=93.6
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcC--CceeEEEcCccCCCCCCC-cCCCeE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRL--NTGEIWVLGGKPGTKGSG-VPGKRV 68 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~--~~G~i~~~g~~~~~~~~~-~~~~~i 68 (125)
|+.++|++|+-.++ +++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++...... ..++.+
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 84 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGI 84 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCe
Confidence 35667777654332 289999999999999999999999999986 899999999876432211 123569
Q ss_pred EEEccCcccCCCCCHHHHHHHHHHHh--C-CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 69 GYMPQEIALYGEFSIKETMMYFGWIF--G-METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 69 g~v~Q~~~~~~~~tv~e~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+||+|++.+++.+||.||+.+....+ + ....+..+++.++++.++++. .++.+.+|
T Consensus 85 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 144 (506)
T PRK13549 85 AIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNL 144 (506)
T ss_pred EEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhC
Confidence 99999999999999999998764322 1 233445567889999999965 46666554
No 135
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=6.5e-23 Score=142.07 Aligned_cols=108 Identities=21% Similarity=0.312 Sum_probs=91.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC----CcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS----GVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~----~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
..+||.++|||||||||||||-+++|+..|++|+|.+.|++...... ..+.+++|||||.+.+.|+||..||+..+
T Consensus 33 v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lP 112 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALP 112 (228)
T ss_pred ecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccch
Confidence 38999999999999999999999999999999999999988765332 23467899999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCc-cchhhh
Q psy340 91 GWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVK 122 (125)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~ 122 (125)
..+.+-...+....+.++|+.+||.. ...++.
T Consensus 113 leL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~ 145 (228)
T COG4181 113 LELRGESSADSRAGAKALLEAVGLGKRLTHYPA 145 (228)
T ss_pred hhhcCCccccHHHHHHHHHHHhCcccccccCcc
Confidence 88887666666778899999999965 244443
No 136
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=6.7e-24 Score=149.65 Aligned_cols=124 Identities=23% Similarity=0.287 Sum_probs=107.0
Q ss_pred Cccccchhhhhcccc---------CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 1 MKTNTNTKKKKKKKK---------KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~---------~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
|..++|.+|....+. ++|.+++|||||||||||||.+++.+++.++|+|+++|.++.....+...+.++++
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 556778888776665 99999999999999999999999999999999999999998877666677889999
Q ss_pred ccCcccCCCCCHHHHHHHHH--HHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 72 PQEIALYGEFSIKETMMYFG--WIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~--~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
-|+......+||+|.+.|.. ...+....+.+..+.++++.++|++ .+|+..+|
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~L 136 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDEL 136 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhc
Confidence 99999999999999999853 2335567788889999999999987 67887765
No 137
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.89 E-value=2.4e-22 Score=145.41 Aligned_cols=106 Identities=20% Similarity=0.248 Sum_probs=83.1
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
.+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ...+|++|++.+++.+|+.||+.+....
T Consensus 7 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 7 TIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-----PDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-----hhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999998764321 1348999999999999999999875321
Q ss_pred --hCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 94 --FGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 94 --~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
......+..+++.++++.++|++ .++.+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 115 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQL 115 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhC
Confidence 22334455667888999999965 35555443
No 138
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.5e-23 Score=152.53 Aligned_cols=123 Identities=17% Similarity=0.236 Sum_probs=89.1
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|++++-..+ +.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|+|
T Consensus 8 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 87 (265)
T PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87 (265)
T ss_pred EEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEee
Confidence 3455665554322 3899999999999999999999999999999999999998764322222345799999
Q ss_pred cCcccCCCCCHHHHHHHHHH-HhC---CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGW-IFG---METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~-~~~---~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+++.+|+.||+.+... ... .......+++.++++.++|.+ .++.+.+|
T Consensus 88 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 144 (265)
T PRK10253 88 QNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTL 144 (265)
T ss_pred ccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccC
Confidence 99998889999999986421 111 112333456788999999964 35555443
No 139
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.88 E-value=8.3e-23 Score=145.07 Aligned_cols=101 Identities=20% Similarity=0.287 Sum_probs=80.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.... ...++.++|++|++.+++.+|+.||+.+.....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~- 101 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLYLGHAPGIKTTLSVLENLRFWHADH- 101 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEEeccccccCCCcCHHHHHHhhcccc-
Confidence 899999999999999999999999999999999999997754321 233567999999998888999999998743211
Q ss_pred CChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 96 METPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
..+++.++++.++++. .++.+.+
T Consensus 102 -----~~~~~~~~l~~~~l~~~~~~~~~~ 125 (201)
T cd03231 102 -----SDEQVEEALARVGLNGFEDRPVAQ 125 (201)
T ss_pred -----cHHHHHHHHHHcCChhhhcCchhh
Confidence 2456778899999964 3444443
No 140
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.88 E-value=2.8e-22 Score=145.58 Aligned_cols=106 Identities=25% Similarity=0.395 Sum_probs=84.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ..++.++|++|++.+++..|+.||+.+....+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~--~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~ 100 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH--ARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR 100 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC--hhhcCEEEEecChhhccCCcHHHHHHhHHHhc
Confidence 4899999999999999999999999999999999999998764321 22467999999999999999999998765554
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhh
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVK 122 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~ 122 (125)
+.......+.+.++++.+++.. .++.+.
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 129 (237)
T TIGR00968 101 KHPKAKIKARVEELLELVQLEGLGDRYPN 129 (237)
T ss_pred CCCHHHHHHHHHHHHHHcCCHhHhhCChh
Confidence 4444444567788999999864 344433
No 141
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.88 E-value=1.7e-22 Score=147.79 Aligned_cols=109 Identities=21% Similarity=0.324 Sum_probs=84.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC-------------CCcCCCeEEEEccCcccCCCC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG-------------SGVPGKRVGYMPQEIALYGEF 81 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~-------------~~~~~~~ig~v~Q~~~~~~~~ 81 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ....++.++|++|++.+++.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHK 102 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCC
Confidence 3899999999999999999999999999999999999998764211 011246799999999999999
Q ss_pred CHHHHHHHHHH-HhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 82 SIKETMMYFGW-IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 82 tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
|+.||+.+... ..+....+..+.+.++++.+++++ .++.+.+
T Consensus 103 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 146 (252)
T TIGR03005 103 TVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQ 146 (252)
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhh
Confidence 99999987532 223344455567888999999965 3444443
No 142
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.88 E-value=9.4e-23 Score=150.03 Aligned_cols=112 Identities=19% Similarity=0.167 Sum_probs=85.5
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|++++-.++ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++. ..++.++|++
T Consensus 13 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~~v~ 87 (257)
T PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTRLMF 87 (257)
T ss_pred EEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceEEEe
Confidence 4556666653322 3899999999999999999999999999999999999876542 1246799999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+++.+||.||+.+.. .. ...+++.++++.++|.+ .++.+.+|
T Consensus 88 q~~~l~~~~tv~enl~~~~--~~----~~~~~~~~~l~~~gl~~~~~~~~~~L 134 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGL--KG----QWRDAALQALAAVGLADRANEWPAAL 134 (257)
T ss_pred cCccCCCCCcHHHHHHhcc--cc----hHHHHHHHHHHHcCChhHhcCChhhC
Confidence 9999899899999998742 11 12356788999999965 34544443
No 143
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.2e-22 Score=151.19 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=85.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC--CCcCCCeEEEEccCcc-cCCCCCHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG--SGVPGKRVGYMPQEIA-LYGEFSIKETMMYFGW 92 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~--~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~ 92 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ....++.+||+||++. .+...|+.||+.+...
T Consensus 30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~ 109 (283)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAV 109 (283)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHH
Confidence 899999999999999999999999999999999999998764211 1123467999999973 3445799999987655
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 93 IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
..+.+..+..+++.++++.++|.. .++.+.+|
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 142 (283)
T PRK13636 110 NLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCL 142 (283)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhhhhCCcccC
Confidence 445555666678899999999965 35555443
No 144
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.88 E-value=7.9e-23 Score=146.01 Aligned_cols=104 Identities=23% Similarity=0.343 Sum_probs=79.7
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccC--CCCCHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALY--GEFSIKETMMYFGW 92 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~--~~~tv~e~l~~~~~ 92 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++. ..++.++|++|++.++ ..+|+.||+.+...
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~ 96 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQRRSIDRDFPISVRDVVLMGLY 96 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEeccccccccCCCCcHHHHHHhccc
Confidence 3899999999999999999999999999999999999987653 1245799999998653 34799999987532
Q ss_pred HhC----CChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 93 IFG----METPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 93 ~~~----~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
... ....+..+++.++++.+++++ .++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 132 (213)
T cd03235 97 GHKGLFRRLSKADKAKVDEALERVGLSELADRQIGE 132 (213)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCCHHHHhCCccc
Confidence 211 122344567888999999964 3444444
No 145
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.7e-22 Score=148.33 Aligned_cols=113 Identities=24% Similarity=0.275 Sum_probs=85.2
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCCCC--CCcCC
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGTKG--SGVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~~~--~~~~~ 65 (125)
+.++|++++-..+ +++||++||+||||||||||+++|+|+.+| ++|+|.++|.++.... ....+
T Consensus 13 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 92 (258)
T PRK14268 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELR 92 (258)
T ss_pred EEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHh
Confidence 4456666543222 289999999999999999999999999874 7999999998764321 11234
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 115 (125)
+.++|++|++.+++ +|+.||+.+....++....+..+++.++++.+++.
T Consensus 93 ~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 141 (258)
T PRK14268 93 KNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALW 141 (258)
T ss_pred hhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 57999999998887 89999998765444444444556788899998873
No 146
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=7.9e-24 Score=146.18 Aligned_cols=100 Identities=23% Similarity=0.331 Sum_probs=86.0
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
...+||+++|+||||||||||+++++.++.|++|.++|.|+++........+++|+|+.|.|.+|+. ||+||+.|+...
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~ 103 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQI 103 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-chhhccccchHH
Confidence 3489999999999999999999999999999999999999998776555567899999999999987 999999998766
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
+.. ....+++.++++.+++++
T Consensus 104 r~r--r~dr~aa~~llar~~l~~ 124 (223)
T COG4619 104 RNR--RPDRAAALDLLARFALPD 124 (223)
T ss_pred hcc--CCChHHHHHHHHHcCCch
Confidence 542 123567788999999975
No 147
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.1e-22 Score=147.74 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=79.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCCC--CCCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGTK--GSGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~~--~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++... .....++.++|++|++.+++.+|+.||+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~ 107 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVV 107 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHH
Confidence 89999999999999999999999999864 799999999876321 11123467999999999999999999998
Q ss_pred HHHHHhCC-ChHHHHHHHHHHHHhCCCC
Q psy340 89 YFGWIFGM-ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 89 ~~~~~~~~-~~~~~~~~~~~~l~~~~L~ 115 (125)
+....++. ...+..+.+.++++.+++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 135 (258)
T PRK14241 108 AGLKLNGVRNKKDLDELVEKSLRGANLW 135 (258)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCc
Confidence 76544332 3344556778889999873
No 148
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.9e-22 Score=149.58 Aligned_cols=108 Identities=18% Similarity=0.201 Sum_probs=82.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC----CCcCCCeEEEEccCc--ccCCCCCHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG----SGVPGKRVGYMPQEI--ALYGEFSIKETMMY 89 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~----~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~ 89 (125)
++|++++|+||||||||||+++|+|+.+|++|+|.++|.++.... ....++.|+|++|++ .+++ .|+.||+.+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~ 109 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAF 109 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHH
Confidence 899999999999999999999999999999999999998764321 112345799999996 3444 699999987
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 90 FGWIFGMETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
....++....+..+++.++++.++|. . .++.+.+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 146 (280)
T PRK13649 110 GPQNFGVSQEEAEALAREKLALVGISESLFEKNPFEL 146 (280)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence 65444444455566788899999996 3 34544443
No 149
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=1.3e-22 Score=144.58 Aligned_cols=109 Identities=21% Similarity=0.285 Sum_probs=84.9
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
|+.++|++|+-.++ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... . .++.++|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--~-~~~~~~~~ 78 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDP--D-VAEACHYL 78 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcch--h-hHhhcEEe
Confidence 35667777664332 289999999999999999999999999999999999999765321 1 34679999
Q ss_pred ccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc
Q psy340 72 PQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
+|++.+++.+|+.+|+.+....++.. .+.+.++++.++|..
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~~ 119 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAP 119 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHH
Confidence 99888888999999998755443321 234778899999864
No 150
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.4e-22 Score=149.31 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=85.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEEEEccCcc-cCCCCCHHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYMPQEIA-LYGEFSIKETMMYFGWI 93 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~ 93 (125)
++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ...++.+||+||++. .+...++.+++.+....
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~ 113 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPEN 113 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhh
Confidence 8999999999999999999999999999999999999987643211 123567999999974 23346899999886555
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.+....+..+++.++++.++|+. .++.+.+|
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 145 (280)
T PRK13633 114 LGIPPEEIRERVDESLKKVGMYEYRRHAPHLL 145 (280)
T ss_pred cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 45555666778899999999965 45555443
No 151
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.6e-23 Score=161.99 Aligned_cols=124 Identities=20% Similarity=0.228 Sum_probs=93.0
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC-cCCCeEEE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG-VPGKRVGY 70 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ig~ 70 (125)
|+.++|++|.-..+ +++||++||+||||||||||+++|+|+.+|++|+|.++|.++...... ..++.++|
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 84 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI 84 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEE
Confidence 35667777654322 289999999999999999999999999999999999999876432211 12356999
Q ss_pred EccCcccCCCCCHHHHHHHHHH----HhCC---ChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 71 MPQEIALYGEFSIKETMMYFGW----IFGM---ETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 71 v~Q~~~~~~~~tv~e~l~~~~~----~~~~---~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|+|++.+++.+||.||+.+... .++. ...+..+++.++++.++|.+ .++.+.+|
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 146 (510)
T PRK09700 85 IYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANL 146 (510)
T ss_pred EeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhC
Confidence 9999999999999999986432 1121 22345677889999999975 46666554
No 152
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.88 E-value=5e-22 Score=142.82 Aligned_cols=101 Identities=32% Similarity=0.511 Sum_probs=80.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
.+||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+.++|+||++.+++.+|+.||+.+....++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~----~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~ 99 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK----DLHKIGSLIESPPLYENLTARENLKVHTTLLG 99 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc----ccccEEEEcCCCCccccCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999998765321 12579999999988999999999987654443
Q ss_pred CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 96 METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.. .+++.++++.++|++ .++.+.+|
T Consensus 100 ~~----~~~~~~~l~~~~l~~~~~~~~~~L 125 (223)
T TIGR03740 100 LP----DSRIDEVLNIVDLTNTGKKKAKQF 125 (223)
T ss_pred CC----HHHHHHHHHHcCCcHHHhhhHhhC
Confidence 22 245678889999965 35554443
No 153
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=2.6e-22 Score=141.89 Aligned_cols=114 Identities=18% Similarity=0.275 Sum_probs=85.3
Q ss_pred Cccccchhhhhcc--------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 1 MKTNTNTKKKKKK--------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 1 ~~~~~~~~~~~~~--------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
|+.++|++++-.+ .+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ..+.++|++
T Consensus 1 ~l~~~~l~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~----~~~~~~~~~ 76 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI----AKPYCTYIG 76 (195)
T ss_pred CeEEEEeeEEECCcEEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh----hhhhEEecc
Confidence 3455566555322 2389999999999999999999999999999999999999776432 124589999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
|++.+++.+|+.||+.+....+. ..+++.++++.+++++ .++.+.+
T Consensus 77 ~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~ 123 (195)
T PRK13541 77 HNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYS 123 (195)
T ss_pred CCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhh
Confidence 99888888999999987544332 1345677888888854 3444443
No 154
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1e-22 Score=148.16 Aligned_cols=104 Identities=26% Similarity=0.342 Sum_probs=79.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++ .|+.||+.+.....+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~ 105 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG 105 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC
Confidence 8999999999999999999999999999999999999987643222223467999999988776 699999886433322
Q ss_pred CChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 96 METPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
...+++.++++.++|+ + .++.+.+|
T Consensus 106 ----~~~~~~~~~l~~~~l~~~~~~~~~~~L 132 (241)
T PRK14250 106 ----EKNVDVEYYLSIVGLNKEYATRDVKNL 132 (241)
T ss_pred ----cHHHHHHHHHHHcCCCHHHhhCCcccC
Confidence 1234677889999995 3 34544443
No 155
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.88 E-value=1.6e-22 Score=145.96 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=73.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC-cCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG-VPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...... ..++.++|++|++.+++.+|+.+|+.+....+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 103 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL 103 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999876432211 12357999999999999999999998764433
Q ss_pred CCChHHHHHHHHHHHHhCC
Q psy340 95 GMETPEIDDRLQFLLNFLD 113 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~ 113 (125)
+... .+...++++.++
T Consensus 104 ~~~~---~~~~~~~l~~~~ 119 (230)
T TIGR03410 104 PRRS---RKIPDEIYELFP 119 (230)
T ss_pred Ccch---HHHHHHHHHHHH
Confidence 2221 223455565555
No 156
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.9e-22 Score=152.52 Aligned_cols=108 Identities=29% Similarity=0.312 Sum_probs=83.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCC----------------CCCcCCCeEEEEccCc--cc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTK----------------GSGVPGKRVGYMPQEI--AL 77 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~----------------~~~~~~~~ig~v~Q~~--~~ 77 (125)
++||++||+|+||||||||+++|+|+++|++|+|.++|.++... .....++.++||||++ .+
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l 129 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQL 129 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcc
Confidence 89999999999999999999999999999999999999765331 0112346799999987 45
Q ss_pred CCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 78 YGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
++ .|+.||+.+.....+.+..+..+++.++++.++|+ . .++.+.+|
T Consensus 130 ~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 177 (320)
T PRK13631 130 FK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGL 177 (320)
T ss_pred cc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence 55 59999998765444445556667888999999996 3 45554443
No 157
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.88 E-value=5.5e-22 Score=143.39 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=79.5
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcC----CceeEEEcCccCCCCCCCcCCCeEEEEccCcc--cCCCCCHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRL----NTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA--LYGEFSIKETM 87 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~----~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~--~~~~~tv~e~l 87 (125)
.+++|++++|+||||||||||+++|+|+.+| ++|+|.++|.++... ...++.++|++|++. +++.+|+.+++
T Consensus 8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~~t~~~~~ 85 (230)
T TIGR02770 8 SLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPLFTMGNHA 85 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcccCHHHHH
Confidence 4579999999999999999999999999998 899999999876432 122357999999984 56778999998
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCC
Q psy340 88 MYFGWIFGMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 115 (125)
.+.....+....+..+++.++++.++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 113 (230)
T TIGR02770 86 IETLRSLGKLSKQARALILEALEAVGLP 113 (230)
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHcCCC
Confidence 7654433333344456788999999996
No 158
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.7e-22 Score=146.27 Aligned_cols=99 Identities=27% Similarity=0.330 Sum_probs=78.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc---CCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR---LNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~---~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
.+||+++|+||||||||||+++|+|+.+ |++|+|.++|.++........++.++|+||++.+++ .|+.||+.+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~ 104 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPK 104 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHh
Confidence 8999999999999999999999999974 689999999987654322233467999999998887 699999987654
Q ss_pred HhCC--ChHHHHHHHHHHHHhCCCC
Q psy340 93 IFGM--ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 93 ~~~~--~~~~~~~~~~~~l~~~~L~ 115 (125)
.++. ......+++.++++.+++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~l~ 129 (246)
T PRK14269 105 LHGMIKNKDEEEALVVDCLQKVGLF 129 (246)
T ss_pred hcCcccChHHHHHHHHHHHHHcCCC
Confidence 4432 1234456678899999984
No 159
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.3e-22 Score=147.04 Aligned_cols=98 Identities=22% Similarity=0.440 Sum_probs=75.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC-cCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG-VPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...... ..++.++|++|++.+++.+||.+|+.+.....
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 108 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA 108 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999876432211 13457999999999999999999998753221
Q ss_pred CCChHHHHHHHHHHHHhC-CCC
Q psy340 95 GMETPEIDDRLQFLLNFL-DLP 115 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~-~L~ 115 (125)
...+..+.+.++++.+ ++.
T Consensus 109 --~~~~~~~~~~~~l~~~~~l~ 128 (237)
T PRK11614 109 --ERDQFQERIKWVYELFPRLH 128 (237)
T ss_pred --ChhHHHHHHHHHHHHHHHHH
Confidence 1223344556666666 354
No 160
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.88 E-value=4.8e-22 Score=144.26 Aligned_cols=101 Identities=19% Similarity=0.104 Sum_probs=78.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCC--cCCceeEEEcCccCCCCCCCc-CCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRR--RLNTGEIWVLGGKPGTKGSGV-PGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~--~~~~G~i~~~g~~~~~~~~~~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
+++||+++|+||||||||||+++|+|+. +|++|+|.++|.++....... .+..++|++|++.+++.+|+.+++.+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~ 102 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSAL 102 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHH
Confidence 3899999999999999999999999995 799999999998765422111 2335899999999999999999998754
Q ss_pred HHhC-------CChHHHHHHHHHHHHhCCCC
Q psy340 92 WIFG-------METPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 92 ~~~~-------~~~~~~~~~~~~~l~~~~L~ 115 (125)
.... ....+..+++.++++.++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 133 (243)
T TIGR01978 103 NARRSARGEEPLDLLDFLKLLKAKLALLGMD 133 (243)
T ss_pred HHhhcccccccccHHHHHHHHHHHHHHcCCc
Confidence 3221 12233456788899999996
No 161
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.1e-22 Score=147.12 Aligned_cols=113 Identities=25% Similarity=0.292 Sum_probs=84.7
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCceeEEEcCccCCCC--CCCcCC
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRR-----LNTGEIWVLGGKPGTK--GSGVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~-----~~~G~i~~~g~~~~~~--~~~~~~ 65 (125)
+.++|..++-..+ +++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... .....+
T Consensus 14 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~ 93 (260)
T PRK10744 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLR 93 (260)
T ss_pred EEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHh
Confidence 4456666553222 28999999999999999999999999986 5899999999876421 111234
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHHHHh-CCChHHHHHHHHHHHHhCCCC
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFGWIF-GMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~ 115 (125)
+.++|++|++.+++ +|+.+|+.+....+ +.+..+..+++.++++.+++.
T Consensus 94 ~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 143 (260)
T PRK10744 94 AKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALW 143 (260)
T ss_pred cceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 67999999988887 79999998765433 334445556788899999873
No 162
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4e-22 Score=147.14 Aligned_cols=99 Identities=28% Similarity=0.351 Sum_probs=77.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCCC--CCCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGTK--GSGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~~--~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++... .....++.++|++|++.+++. |+.||+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~ 121 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVA 121 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHH
Confidence 89999999999999999999999999874 899999999876421 111234679999999988875 9999998
Q ss_pred HHHHHhCC--ChHHHHHHHHHHHHhCCCC
Q psy340 89 YFGWIFGM--ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 89 ~~~~~~~~--~~~~~~~~~~~~l~~~~L~ 115 (125)
+....++. ...+..+++.++++.+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 150 (267)
T PRK14235 122 YGPRIHGLARSKAELDEIVETSLRKAGLW 150 (267)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHcCCc
Confidence 76543332 2334456778899999984
No 163
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.87 E-value=1.5e-22 Score=161.01 Aligned_cols=119 Identities=20% Similarity=0.212 Sum_probs=90.9
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC-cCCCeEEEE
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG-VPGKRVGYM 71 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ig~v 71 (125)
+.++|++|+...+ +++|++++|+|||||||||||++|+|+.+|++|+|.++|.++...... ..+..++|+
T Consensus 12 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 91 (510)
T PRK15439 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLV 91 (510)
T ss_pred EEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 4566776654332 289999999999999999999999999999999999999876432211 123469999
Q ss_pred ccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 72 PQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+|++.+++.+||.||+.+.... ..+..+++.++++.++|+. .++.+.+|
T Consensus 92 ~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (510)
T PRK15439 92 PQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSL 141 (510)
T ss_pred eccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhC
Confidence 9999999999999999875321 2344567888999999975 45655544
No 164
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=6.2e-22 Score=141.55 Aligned_cols=105 Identities=26% Similarity=0.358 Sum_probs=81.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC----CCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG----SGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~----~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.... ....++.++|++|++.+++.+|+.+|+.+..
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~ 100 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGL 100 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHH
Confidence 78 999999999999999999999999999999999997654211 1112457999999999999999999998754
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 92 WIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
..+ ......+++.++++.++++. .++.+.+
T Consensus 101 ~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 131 (214)
T cd03297 101 KRK--RNREDRISVDELLDLLGLDHLLNRYPAQ 131 (214)
T ss_pred hhC--CHHHHHHHHHHHHHHcCCHhHhhcCccc
Confidence 322 22334567888999999965 3444443
No 165
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.87 E-value=2.9e-22 Score=176.93 Aligned_cols=122 Identities=23% Similarity=0.316 Sum_probs=98.8
Q ss_pred ccccchhhhhcc--c---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEE
Q psy340 2 KTNTNTKKKKKK--K---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGY 70 (125)
Q Consensus 2 ~~~~~~~~~~~~--~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~ 70 (125)
+.++|+.|+-.+ + +++||++||+||||||||||+++|+|+.+|++|+|.++|.++.... ...++.|||
T Consensus 1938 L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~-~~~r~~IGy 2016 (2272)
T TIGR01257 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNI-SDVHQNMGY 2016 (2272)
T ss_pred EEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchH-HHHhhhEEE
Confidence 456777776543 1 2899999999999999999999999999999999999998874321 123467999
Q ss_pred EccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 71 MPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 71 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+||++.+++.+|++|++.+.+..++.+..+.+++++++++.++|.+ .++.+.+|
T Consensus 2017 ~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~L 2071 (2272)
T TIGR01257 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTY 2071 (2272)
T ss_pred EeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhC
Confidence 9999999999999999998877777766666778889999999965 45655544
No 166
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.6e-22 Score=144.61 Aligned_cols=100 Identities=26% Similarity=0.314 Sum_probs=77.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCceeEEEcCccCCCCC--CCcCCCeEEEEccCcccCCCCCHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRR-----LNTGEIWVLGGKPGTKG--SGVPGKRVGYMPQEIALYGEFSIKETM 87 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~-----~~~G~i~~~g~~~~~~~--~~~~~~~ig~v~Q~~~~~~~~tv~e~l 87 (125)
+++||+++|+||||||||||+++|+|+.. |++|+|.++|.++.... ....++.++|++|++.+++ .|+.||+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 107 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENV 107 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHH
Confidence 39999999999999999999999999864 58999999998764311 1122457999999998887 5999999
Q ss_pred HHHHHHhCC-ChHHHHHHHHHHHHhCCCC
Q psy340 88 MYFGWIFGM-ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 88 ~~~~~~~~~-~~~~~~~~~~~~l~~~~L~ 115 (125)
.+.....+. ......+++.++++.+++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 136 (253)
T PRK14242 108 AYGLRVNGVKDKAYLAERVERSLRHAALW 136 (253)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCc
Confidence 876544433 2334456788889998884
No 167
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=5.4e-22 Score=145.24 Aligned_cols=98 Identities=23% Similarity=0.299 Sum_probs=76.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCCC--CCCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGTK--GSGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~~--~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++... .....++.++|++|++.+++ +||.||+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~ 109 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNIS 109 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHH
Confidence 89999999999999999999999999986 489999999875421 11123467999999988775 89999998
Q ss_pred HHHHHhCC-ChHHHHHHHHHHHHhCCC
Q psy340 89 YFGWIFGM-ETPEIDDRLQFLLNFLDL 114 (125)
Q Consensus 89 ~~~~~~~~-~~~~~~~~~~~~l~~~~L 114 (125)
+.....+. ...+..+++.++++.+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~l 136 (254)
T PRK14273 110 YGPKIHGTKDKKKLDEIVEQSLKKSAL 136 (254)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 76543332 233455678888888887
No 168
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.87 E-value=2.7e-22 Score=147.44 Aligned_cols=123 Identities=24% Similarity=0.251 Sum_probs=88.9
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCC---ceeEEEcCccCCCCC-----CCcC
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLN---TGEIWVLGGKPGTKG-----SGVP 64 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~---~G~i~~~g~~~~~~~-----~~~~ 64 (125)
+.++|+.++-..+ +.+||+++|+||||||||||+++|+|+.+|+ +|+|.++|.++.... ....
T Consensus 5 l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (262)
T PRK09984 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKS 84 (262)
T ss_pred EEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHH
Confidence 4566666654322 2899999999999999999999999999876 499999998764311 0112
Q ss_pred CCeEEEEccCcccCCCCCHHHHHHHHHHH--------hCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 65 GKRVGYMPQEIALYGEFSIKETMMYFGWI--------FGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 65 ~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
++.++|+||++.+++.+|+.+|+.+.... ......+..+++.++++.++++. .++.+.+|
T Consensus 85 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 153 (262)
T PRK09984 85 RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL 153 (262)
T ss_pred HhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence 45799999999999999999999864311 11112344567889999999964 45555443
No 169
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=9.3e-22 Score=149.18 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=87.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCCeEEEEccCc--ccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKRVGYMPQEI--ALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~ 90 (125)
.+||++||+|+||||||||+++|+|+.+|++|+|.++|.++...... ..++.|+||||++ .+++.+++.+++...
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~ 118 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEP 118 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHH
Confidence 89999999999999999999999999999999999999887543211 2345799999997 588999999999876
Q ss_pred HHHh-CCChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 91 GWIF-GMETPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 91 ~~~~-~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
...+ .....+..+++.++++.++|.. .++.+.+|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~L 155 (327)
T PRK11308 119 LLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMF 155 (327)
T ss_pred HHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccC
Confidence 5543 3445566778999999999953 35555543
No 170
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.6e-22 Score=158.49 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=92.9
Q ss_pred Cccccchhhhhcc---------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEEE
Q psy340 1 MKTNTNTKKKKKK---------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGY 70 (125)
Q Consensus 1 ~~~~~~~~~~~~~---------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig~ 70 (125)
|+.++|++|.-.+ .+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.++|
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 83 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAI 83 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEE
Confidence 3456666665432 229999999999999999999999999999999999999987643211 122467999
Q ss_pred EccCcccCCCCCHHHHHHHHHH--HhC-CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 71 MPQEIALYGEFSIKETMMYFGW--IFG-METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 71 v~Q~~~~~~~~tv~e~l~~~~~--~~~-~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|+|++.+++.+||.+|+.+... .++ ....+..+++.++++.++|+. .++.+.+|
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (501)
T PRK11288 84 IYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYL 141 (501)
T ss_pred EEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhC
Confidence 9999999999999999987532 122 233455677889999999964 45555554
No 171
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.1e-22 Score=144.83 Aligned_cols=109 Identities=22% Similarity=0.256 Sum_probs=88.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||+.+|+|||||||||||+.|+|.+.|++|++.++|.+..........++-++++|+..+-..+||.|.+.+...-++
T Consensus 25 ~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~ 104 (259)
T COG4559 25 RPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR 104 (259)
T ss_pred cCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc
Confidence 89999999999999999999999999999999999999887665544455678999999988888899999998765443
Q ss_pred C--ChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 96 M--ETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 96 ~--~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
. ...+..+.++++|+..++.. ..|.+.+|
T Consensus 105 ~g~~~~e~~~i~~~ala~~d~~~la~R~y~~L 136 (259)
T COG4559 105 SGREPEEDERIAAQALAATDLSGLAGRDYRTL 136 (259)
T ss_pred cCCCchhhHHHHHHHHHHcChhhhhccchhhc
Confidence 3 22355566888999999875 35555443
No 172
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.87 E-value=4.8e-22 Score=145.34 Aligned_cols=107 Identities=19% Similarity=0.206 Sum_probs=81.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++|++++|+||||||||||+++|+|+.+ .+|+|.++|.++........++.++|++|++.+++.+|+.+|+.+....
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~- 96 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPD- 96 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCcc-
Confidence 38999999999999999999999999985 4999999998765422222235699999998888889999999875321
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
.....+..+++.++++.++|.+ .++.+.+
T Consensus 97 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 126 (248)
T PRK03695 97 KTRTEAVASALNEVAEALGLDDKLGRSVNQ 126 (248)
T ss_pred CCCcHHHHHHHHHHHHHcCCHhHhcCCccc
Confidence 2223444567889999999965 3454444
No 173
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.87 E-value=1.1e-21 Score=141.31 Aligned_cols=107 Identities=30% Similarity=0.369 Sum_probs=80.5
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCc---CCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRR---LNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~---~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
.+++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ...++.++|++|++.+++.+|+.||+.+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 105 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQFQKCVAYVRQDDILLPGLTVRETLTYT 105 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh---HHhcccEEEeCCCCccCcCCcHHHHHHHH
Confidence 348999999999999999999999999998 899999999976532 12356799999999999999999999876
Q ss_pred HHHhCC---ChHHHHHHHHH-HHHhCCCCc-cchhhhh
Q psy340 91 GWIFGM---ETPEIDDRLQF-LLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 91 ~~~~~~---~~~~~~~~~~~-~l~~~~L~~-~~~~~~~ 123 (125)
...... .......++.+ +++.++++. .++.+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (226)
T cd03234 106 AILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKG 143 (226)
T ss_pred HHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccC
Confidence 543321 11222234444 788888864 3444433
No 174
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.5e-22 Score=148.98 Aligned_cols=103 Identities=25% Similarity=0.444 Sum_probs=82.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC----cCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG----VPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~----~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
+.--++||-|+||||||||+|+|+|+.+|+.|.|.++|....+.... ..+++||||||+..+||++||+.|+.|..
T Consensus 22 p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~ 101 (352)
T COG4148 22 PARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGM 101 (352)
T ss_pred CCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhh
Confidence 33379999999999999999999999999999999999754432111 23578999999999999999999999875
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 92 WIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
... ..+...++.+.+||++ .+|++.+|
T Consensus 102 ~~~------~~~~fd~iv~lLGI~hLL~R~P~~L 129 (352)
T COG4148 102 WKS------MRAQFDQLVALLGIEHLLDRYPGTL 129 (352)
T ss_pred ccc------chHhHHHHHHHhCcHHHHhhCCCcc
Confidence 433 2345667788889977 57777665
No 175
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=9.5e-22 Score=143.71 Aligned_cols=113 Identities=28% Similarity=0.356 Sum_probs=84.6
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCCCCC--CcCC
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGTKGS--GVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~~~~--~~~~ 65 (125)
+.++|++++-..+ +++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..... ...+
T Consensus 5 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (251)
T PRK14270 5 MESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELR 84 (251)
T ss_pred EEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHH
Confidence 4566666654322 289999999999999999999999999875 79999999987643111 1224
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHHHHhCC-ChHHHHHHHHHHHHhCCCC
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGM-ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~ 115 (125)
+.++|++|++.+++ +|+.||+.+....++. ...+..+++.++++.+++.
T Consensus 85 ~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 134 (251)
T PRK14270 85 KRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALW 134 (251)
T ss_pred hheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCc
Confidence 67999999998887 8999999876544443 2334456677888898873
No 176
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.1e-21 Score=143.20 Aligned_cols=114 Identities=25% Similarity=0.254 Sum_probs=84.1
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCCCC--CCcC
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGTKG--SGVP 64 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~~~--~~~~ 64 (125)
|+.++|++++-..+ +++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.... ....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 34566666653222 299999999999999999999999999874 8999999997764311 1123
Q ss_pred CCeEEEEccCcccCCCCCHHHHHHHHHHHhCCC-hHHHHHHHHHHHHhCCCC
Q psy340 65 GKRVGYMPQEIALYGEFSIKETMMYFGWIFGME-TPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 65 ~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~ 115 (125)
++.++|++|++.+++ .|+.||+.+....++.. .....+.+.++++.+++.
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 133 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALW 133 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCC
Confidence 467999999998887 89999998765443322 233456677888888874
No 177
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.87 E-value=3.7e-22 Score=157.00 Aligned_cols=109 Identities=26% Similarity=0.370 Sum_probs=88.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEEEEccCcccCCCCCHHHHHHHHHHH-
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYMPQEIALYGEFSIKETMMYFGWI- 93 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~- 93 (125)
.+||++||+|.||||||||+|+|+|.++|++|+|.++|+.....++ .....-|+.|+|+..+.|++||.||+.+....
T Consensus 32 ~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~ 111 (500)
T COG1129 32 RPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPT 111 (500)
T ss_pred eCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccc
Confidence 8999999999999999999999999999999999999987653322 22345799999999999999999999875322
Q ss_pred --hC-CChHHHHHHHHHHHHhCCCC-ccchhhhhc
Q psy340 94 --FG-METPEIDDRLQFLLNFLDLP-SQSRLVKNL 124 (125)
Q Consensus 94 --~~-~~~~~~~~~~~~~l~~~~L~-~~~~~~~~L 124 (125)
.+ .++.++++++.++|+.+++. +.+..+.+|
T Consensus 112 ~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~L 146 (500)
T COG1129 112 RRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDL 146 (500)
T ss_pred cCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhC
Confidence 12 45788889999999999984 244555443
No 178
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-21 Score=146.10 Aligned_cols=109 Identities=22% Similarity=0.205 Sum_probs=81.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCC-----CCCcCCCeEEEEccCcc-cCCCCCHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTK-----GSGVPGKRVGYMPQEIA-LYGEFSIKETMMY 89 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~-----~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~ 89 (125)
++||++||+||||||||||+++|+|+.+|++|+|.++|.++... .....++.++|++|++. .+...|+.||+.+
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~ 114 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAF 114 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999775321 11123457999999973 2234599999987
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 90 FGWIFGMETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
.....+....+..+++.++++.++|+ . .++.+.+|
T Consensus 115 ~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~L 151 (289)
T PRK13645 115 GPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFEL 151 (289)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhC
Confidence 65443444445556788899999994 3 35555443
No 179
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.2e-22 Score=145.99 Aligned_cols=111 Identities=21% Similarity=0.220 Sum_probs=81.8
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCceeEEEcCccCCCC--CCCcCC
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRR-----LNTGEIWVLGGKPGTK--GSGVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~-----~~~G~i~~~g~~~~~~--~~~~~~ 65 (125)
+.++|++++-..+ +++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... .....+
T Consensus 14 l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~ 93 (269)
T PRK14259 14 ISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVR 93 (269)
T ss_pred EEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHh
Confidence 4456666554332 28999999999999999999999999987 6899999999875321 111234
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L 114 (125)
+.++|++|++.+++ .|+.||+.+.....+.. .+..+++.++++.+++
T Consensus 94 ~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l 140 (269)
T PRK14259 94 RRIGMVFQQPNPFP-KSIYENIAFGARINGYT-GDMDELVERSLRKAAV 140 (269)
T ss_pred hceEEEccCCccch-hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCC
Confidence 57999999998887 49999998765444332 2334566777888876
No 180
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.86 E-value=1.3e-21 Score=148.31 Aligned_cols=100 Identities=27% Similarity=0.388 Sum_probs=81.3
Q ss_pred EECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHH
Q psy340 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEID 102 (125)
Q Consensus 23 liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 102 (125)
|+|||||||||||++|+|+.+|++|+|.++|.++..... .++.++|+||++.+++++||.||+.+....++.+..+..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999987643221 246799999999999999999999987655555555556
Q ss_pred HHHHHHHHhCCCCc-cchhhhhc
Q psy340 103 DRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 103 ~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+++.++++.++|++ .++.+.+|
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~~~L 101 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKPHQL 101 (325)
T ss_pred HHHHHHHHHcCCcchhcCChhhC
Confidence 78899999999975 45555544
No 181
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.4e-21 Score=142.65 Aligned_cols=99 Identities=25% Similarity=0.340 Sum_probs=76.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCCC--CCCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGTK--GSGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~~--~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++... .....++.++|++|++.+++ +|+.+|+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~ 105 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVA 105 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHH
Confidence 89999999999999999999999998753 699999999876431 11123467999999988887 89999998
Q ss_pred HHHHHhCC-ChHHHHHHHHHHHHhCCCC
Q psy340 89 YFGWIFGM-ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 89 ~~~~~~~~-~~~~~~~~~~~~l~~~~L~ 115 (125)
+....++. ...+..+.+.++++.+++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 133 (250)
T PRK14240 106 YGPRTHGIKDKKKLDEIVEKSLKGAALW 133 (250)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCc
Confidence 76544443 2334566778888888763
No 182
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.7e-21 Score=143.22 Aligned_cols=100 Identities=25% Similarity=0.261 Sum_probs=77.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcC------ccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG------GKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g------~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
.+||+++|+||||||||||+++|+|+.+|++|+|.++| .++........+..++|++|++.+++.+|+.+|+.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~ 113 (257)
T PRK14246 34 PNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAY 113 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHH
Confidence 89999999999999999999999999999997777665 333221111234679999999999999999999987
Q ss_pred HHHHhCC-ChHHHHHHHHHHHHhCCCC
Q psy340 90 FGWIFGM-ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 90 ~~~~~~~-~~~~~~~~~~~~l~~~~L~ 115 (125)
.....+. ...+..+++.++++.+++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (257)
T PRK14246 114 PLKSHGIKEKREIKKIVEECLRKVGLW 140 (257)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 6443332 2345556788899999985
No 183
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.3e-21 Score=144.37 Aligned_cols=113 Identities=24% Similarity=0.198 Sum_probs=84.2
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCceeEEEcCccCCCC--CCCcCC
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRR-----LNTGEIWVLGGKPGTK--GSGVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~-----~~~G~i~~~g~~~~~~--~~~~~~ 65 (125)
+.++|++++-..+ +.+||++||+||||||||||+++|+|+.+ |++|+|.++|.++... .....+
T Consensus 21 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 100 (267)
T PRK14237 21 LSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMR 100 (267)
T ss_pred EEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHh
Confidence 4566666654332 28999999999999999999999999986 5899999999876421 111234
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHHHHhCC-ChHHHHHHHHHHHHhCCCC
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGM-ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~ 115 (125)
+.++|+||++.+++ .|+.||+.+.....+. ...+..+++.++++.++|.
T Consensus 101 ~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 150 (267)
T PRK14237 101 KHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALW 150 (267)
T ss_pred cceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 67999999988877 5999999876443332 2334456778889888884
No 184
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.86 E-value=1e-21 Score=155.77 Aligned_cols=124 Identities=24% Similarity=0.255 Sum_probs=91.3
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcC--CceeEEEcCccCCCCCCC-cCCCeE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRL--NTGEIWVLGGKPGTKGSG-VPGKRV 68 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~--~~G~i~~~g~~~~~~~~~-~~~~~i 68 (125)
|+.++|++++-.++ +++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++...... ..++.+
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 34566666553322 299999999999999999999999999986 799999999876432111 123579
Q ss_pred EEEccCcccCCCCCHHHHHHHHHHHh--C--CChHHHHHHHHHHHHhCCCCc-c-chhhhhc
Q psy340 69 GYMPQEIALYGEFSIKETMMYFGWIF--G--METPEIDDRLQFLLNFLDLPS-Q-SRLVKNL 124 (125)
Q Consensus 69 g~v~Q~~~~~~~~tv~e~l~~~~~~~--~--~~~~~~~~~~~~~l~~~~L~~-~-~~~~~~L 124 (125)
+||||++.+++.+||.||+.+..... . ....+..+++.++++.++|.. . ++.+.+|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 142 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDY 142 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhC
Confidence 99999998999999999998754322 1 223445567889999999964 2 4555554
No 185
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.6e-21 Score=145.27 Aligned_cols=112 Identities=23% Similarity=0.284 Sum_probs=84.4
Q ss_pred ccccchhhhhcc---------ccCCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCceeEEEcCccCCCC--CCCcCC
Q psy340 2 KTNTNTKKKKKK---------KKKKKKKYGLLGASGCGKTTLLSCIVGRRR-----LNTGEIWVLGGKPGTK--GSGVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~---------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~-----~~~G~i~~~g~~~~~~--~~~~~~ 65 (125)
+.++|++++-.. .+.+||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... .....+
T Consensus 40 l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~ 119 (285)
T PRK14254 40 IEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALR 119 (285)
T ss_pred EEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhh
Confidence 456666665432 238999999999999999999999999986 6899999999876421 111234
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 115 (125)
+.++|++|++.+++. |+.||+.+.....+.+. ...+++.++++.+++.
T Consensus 120 ~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~ 167 (285)
T PRK14254 120 RRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALW 167 (285)
T ss_pred ccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCC
Confidence 689999999888875 99999987654444332 3456788889999874
No 186
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.86 E-value=1.7e-21 Score=143.02 Aligned_cols=123 Identities=18% Similarity=0.141 Sum_probs=87.8
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCcc-----CCCCCCCc----
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK-----PGTKGSGV---- 63 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~-----~~~~~~~~---- 63 (125)
+.++|++++-..+ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ +.......
T Consensus 7 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~ 86 (258)
T PRK11701 7 LSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRL 86 (258)
T ss_pred EEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHH
Confidence 4556666543222 28999999999999999999999999999999999999986 43321111
Q ss_pred CCCeEEEEccCc--ccCCCCCHHHHHHHHHHHhCC-ChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 64 PGKRVGYMPQEI--ALYGEFSIKETMMYFGWIFGM-ETPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 64 ~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
.++.++|++|++ .+++.+++.+++.+....... ...+..+.+.++++.+++.. .++.+.+|
T Consensus 87 ~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 152 (258)
T PRK11701 87 LRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTF 152 (258)
T ss_pred hhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccC
Confidence 234699999997 367778999998764432221 23345667888999999952 34544443
No 187
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.3e-22 Score=156.97 Aligned_cols=123 Identities=20% Similarity=0.346 Sum_probs=89.4
Q ss_pred ccccchhhhhccc-------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEEEEcc
Q psy340 2 KTNTNTKKKKKKK-------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYMPQ 73 (125)
Q Consensus 2 ~~~~~~~~~~~~~-------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig~v~Q 73 (125)
+.++|+++..++- +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.++||+|
T Consensus 266 l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q 345 (510)
T PRK09700 266 FEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE 345 (510)
T ss_pred EEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccC
Confidence 4566777643222 28999999999999999999999999999999999999987643211 112357999999
Q ss_pred C---cccCCCCCHHHHHHHHHHHh--------CC-ChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 74 E---IALYGEFSIKETMMYFGWIF--------GM-ETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 74 ~---~~~~~~~tv~e~l~~~~~~~--------~~-~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
+ ..+++.+||.||+.+....+ +. ......+.+.++++.+++. + .++.+.+|
T Consensus 346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 410 (510)
T PRK09700 346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITEL 410 (510)
T ss_pred ccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccC
Confidence 8 46888999999998643211 11 1223345678899999995 4 56666654
No 188
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.3e-21 Score=157.47 Aligned_cols=109 Identities=20% Similarity=0.265 Sum_probs=86.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCCeEEEEccCc--ccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKRVGYMPQEI--ALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~ 90 (125)
++||++||+||||||||||+++|+|+.+|++|+|.++|.++...... ..++.|+||||++ .+++.+||.+++.+.
T Consensus 348 ~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~ 427 (623)
T PRK10261 348 WPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEP 427 (623)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999876532211 1245799999997 588999999999876
Q ss_pred HHHhCC-ChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 91 GWIFGM-ETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 91 ~~~~~~-~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
...++. ...+..+++.++++.++|+ . .++.+.+|
T Consensus 428 ~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~L 464 (623)
T PRK10261 428 LRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEF 464 (623)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccC
Confidence 544443 2345567888999999995 3 46666554
No 189
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.7e-21 Score=141.35 Aligned_cols=100 Identities=24% Similarity=0.272 Sum_probs=78.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc--C---CceeEEEcCccCCCCC--CCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR--L---NTGEIWVLGGKPGTKG--SGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~--~---~~G~i~~~g~~~~~~~--~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.++.... ....++.++|+||++.+++.+|+.||+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 107 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVI 107 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHH
Confidence 8999999999999999999999999985 3 6899999998764311 1123567999999999999999999998
Q ss_pred HHHHHhCC-ChHHHHHHHHHHHHhCCCC
Q psy340 89 YFGWIFGM-ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 89 ~~~~~~~~-~~~~~~~~~~~~l~~~~L~ 115 (125)
+.....+. ...+..+++.++++.+++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 135 (252)
T PRK14256 108 AGYKLNGRVNRSEADEIVESSLKRVALW 135 (252)
T ss_pred hHHHhcCCCCHHHHHHHHHHHHHHcCCc
Confidence 75443332 2344456678889899874
No 190
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.1e-21 Score=141.78 Aligned_cols=113 Identities=22% Similarity=0.230 Sum_probs=82.7
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCC-----ceeEEEcCccCCCC--CCCcCC
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLN-----TGEIWVLGGKPGTK--GSGVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~-----~G~i~~~g~~~~~~--~~~~~~ 65 (125)
+.++|++|+-..+ +++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++... .....+
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T PRK14272 5 LSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMR 84 (252)
T ss_pred EEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhh
Confidence 4566666654332 3899999999999999999999999998764 89999999876431 111234
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHHHHhCCC-hHHHHHHHHHHHHhCCC
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGME-TPEIDDRLQFLLNFLDL 114 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L 114 (125)
+.++|++|++.+++.+|+.||+.+.....+.. ..+..+.+.++++.+++
T Consensus 85 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l 134 (252)
T PRK14272 85 RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAAL 134 (252)
T ss_pred ceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCc
Confidence 57999999999999999999998754433322 23344556666676665
No 191
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.2e-21 Score=141.75 Aligned_cols=99 Identities=29% Similarity=0.341 Sum_probs=76.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCceeEEEcCccCCCCC--CCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR-----LNTGEIWVLGGKPGTKG--SGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~-----~~~G~i~~~g~~~~~~~--~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
.+||+++|+||||||||||+++|+|+.+ |++|+|.++|.++.... ....++.++|++|++.+++ .|+.||+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~ 106 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVA 106 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHH
Confidence 8999999999999999999999999986 47999999998764311 1123457999999998876 79999998
Q ss_pred HHHHHhCCCh-HHHHHHHHHHHHhCCCC
Q psy340 89 YFGWIFGMET-PEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 89 ~~~~~~~~~~-~~~~~~~~~~l~~~~L~ 115 (125)
+.....+... ....+.+.++++.+++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 134 (251)
T PRK14251 107 YGLKIAGVKDKELIDQRVEESLKQAAIW 134 (251)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHcCCC
Confidence 7544443322 23345677888888883
No 192
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.2e-21 Score=155.06 Aligned_cols=110 Identities=23% Similarity=0.340 Sum_probs=84.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEEEEccCcccCCCCCHHHHHHHHHH-
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYMPQEIALYGEFSIKETMMYFGW- 92 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~- 92 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.++|++|++.+++.+||.||+.+...
T Consensus 21 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 100 (491)
T PRK10982 21 VRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP 100 (491)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccc
Confidence 38999999999999999999999999999999999999987643211 1124579999999988999999999987432
Q ss_pred HhC--CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 93 IFG--METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 93 ~~~--~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
..+ ....+..+++.++++.++++. .++.+.+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 135 (491)
T PRK10982 101 TKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATL 135 (491)
T ss_pred ccccccCHHHHHHHHHHHHHHcCCCCCccCchhhC
Confidence 112 123344567889999999965 45555554
No 193
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.4e-21 Score=141.50 Aligned_cols=113 Identities=23% Similarity=0.191 Sum_probs=82.9
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCC--cC---CceeEEEcCccCCCCC--CCcCC
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRR--RL---NTGEIWVLGGKPGTKG--SGVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~--~~---~~G~i~~~g~~~~~~~--~~~~~ 65 (125)
+.++|++++-..+ +++||+++|+||||||||||+++|+|+. .| ++|+|.++|.++.... ....+
T Consensus 6 l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14239 6 LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLR 85 (252)
T ss_pred EEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhh
Confidence 4566666653322 2899999999999999999999999985 36 5899999998764211 11234
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHHHHhCCC-hHHHHHHHHHHHHhCCCC
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGME-TPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~ 115 (125)
+.++|++|++.+++ +|+.||+.+.....+.. .....+++.++++.+++.
T Consensus 86 ~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 135 (252)
T PRK14239 86 KEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIW 135 (252)
T ss_pred hcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCc
Confidence 67999999998887 79999998765444432 233456677888888863
No 194
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2e-21 Score=142.69 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=83.7
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCc--C---CceeEEEcCccCCCCC--CCcCC
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRR--L---NTGEIWVLGGKPGTKG--SGVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~--~---~~G~i~~~g~~~~~~~--~~~~~ 65 (125)
+.++|.+++-..+ +++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.++.... ....+
T Consensus 13 l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 92 (259)
T PRK14274 13 YQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELR 92 (259)
T ss_pred EEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHh
Confidence 4566666653222 38999999999999999999999999986 3 5899999998764211 11224
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHHHHhCC-ChHHHHHHHHHHHHhCCCC
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGM-ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~ 115 (125)
+.++|++|++.+++. |+.||+.+....++. ...+..+++.++++.+++.
T Consensus 93 ~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 142 (259)
T PRK14274 93 KNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALW 142 (259)
T ss_pred hceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCc
Confidence 579999999988875 999999876544433 2344456678888888874
No 195
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.86 E-value=4.5e-21 Score=140.49 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=82.4
Q ss_pred ccccchhhhhcc--------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcC----CceeEEEcCccCCCCCCCcCCCeEE
Q psy340 2 KTNTNTKKKKKK--------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRL----NTGEIWVLGGKPGTKGSGVPGKRVG 69 (125)
Q Consensus 2 ~~~~~~~~~~~~--------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~----~~G~i~~~g~~~~~~~~~~~~~~ig 69 (125)
+.++|++|+-.+ .+++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++... ...++.++
T Consensus 5 l~~~~l~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~~i~ 82 (254)
T PRK10418 5 IELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGRKIA 82 (254)
T ss_pred EEEeCeEEEeccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccceEE
Confidence 455666654322 2399999999999999999999999999998 999999999876421 12235799
Q ss_pred EEccCcc--cCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc
Q psy340 70 YMPQEIA--LYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 70 ~v~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
|++|++. +.+.+++.+++.+.....+... ..+++.++++.++|..
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~ 129 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLEN 129 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCC
Confidence 9999974 4466789888876543333322 2367888999999864
No 196
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.86 E-value=2e-21 Score=171.71 Aligned_cols=122 Identities=21% Similarity=0.282 Sum_probs=98.0
Q ss_pred ccccchhhhhc--cc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEE
Q psy340 2 KTNTNTKKKKK--KK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGY 70 (125)
Q Consensus 2 ~~~~~~~~~~~--~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~ 70 (125)
+.++|+.|+-. ++ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ...++.+||
T Consensus 929 L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~-~~~r~~IG~ 1007 (2272)
T TIGR01257 929 VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNL-DAVRQSLGM 1007 (2272)
T ss_pred EEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchH-HHHhhcEEE
Confidence 34566666642 22 2999999999999999999999999999999999999998875321 123467999
Q ss_pred EccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 71 MPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 71 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
++|++.+++.+||+|++.+....++.+..+.++++.++++.++|++ .++.+.+|
T Consensus 1008 ~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~L 1062 (2272)
T TIGR01257 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDL 1062 (2272)
T ss_pred EecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhC
Confidence 9999999999999999999877776655666778899999999976 46665554
No 197
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.86 E-value=3.6e-21 Score=138.70 Aligned_cols=104 Identities=29% Similarity=0.335 Sum_probs=78.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccC--CCCCHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALY--GEFSIKETMMYFGW 92 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~--~~~tv~e~l~~~~~ 92 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .++.++|++|++.++ ..+|+.+++.+...
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-----~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK-----GWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH-----hhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 57899999999999999999999999999999999999976421 235799999998654 34789999976422
Q ss_pred H----hCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 93 I----FGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 93 ~----~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
. ......+..+++.++++.+++++ .++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 113 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE 113 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhh
Confidence 1 11122334456888999999965 3444443
No 198
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3e-21 Score=143.21 Aligned_cols=113 Identities=19% Similarity=0.108 Sum_probs=84.1
Q ss_pred ccccchhhhhcc---------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCCCC-CCcCCC
Q psy340 2 KTNTNTKKKKKK---------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGTKG-SGVPGK 66 (125)
Q Consensus 2 ~~~~~~~~~~~~---------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~~~-~~~~~~ 66 (125)
+.++|++++-.. .+++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.... ....++
T Consensus 22 l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (276)
T PRK14271 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRR 101 (276)
T ss_pred EEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhh
Confidence 455666665433 2389999999999999999999999999985 7999999997764321 112346
Q ss_pred eEEEEccCcccCCCCCHHHHHHHHHHHhC-CChHHHHHHHHHHHHhCCCC
Q psy340 67 RVGYMPQEIALYGEFSIKETMMYFGWIFG-METPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 67 ~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~ 115 (125)
.++|++|++.+++ +|+.+|+.+...... ....+..+.+.++++.+++.
T Consensus 102 ~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 150 (276)
T PRK14271 102 RVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLW 150 (276)
T ss_pred heEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC
Confidence 7999999998887 799999987543322 23344455677888888885
No 199
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.4e-21 Score=141.31 Aligned_cols=113 Identities=24% Similarity=0.225 Sum_probs=83.7
Q ss_pred ccccchhhhhcc---------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCC-CCCCcCCC
Q psy340 2 KTNTNTKKKKKK---------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGT-KGSGVPGK 66 (125)
Q Consensus 2 ~~~~~~~~~~~~---------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~-~~~~~~~~ 66 (125)
+.++|++++-.+ .+.+||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ......++
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 83 (249)
T PRK14253 4 FNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRI 83 (249)
T ss_pred EEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHh
Confidence 566777765433 2389999999999999999999999999885 59999999987632 11122346
Q ss_pred eEEEEccCcccCCCCCHHHHHHHHHHHhCCC-hHHHHHHHHHHHHhCCCC
Q psy340 67 RVGYMPQEIALYGEFSIKETMMYFGWIFGME-TPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 67 ~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~ 115 (125)
.++|++|++.+++ .|+.||+.+.....+.. .....+++.++++.+++.
T Consensus 84 ~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (249)
T PRK14253 84 KVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALW 132 (249)
T ss_pred heeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCc
Confidence 7999999998887 79999998764443322 233445677788888763
No 200
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.6e-21 Score=145.93 Aligned_cols=101 Identities=21% Similarity=0.235 Sum_probs=81.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc----CCceeEEEcCccCCCCCCC----cCCCeEEEEccCc--ccCCCCCHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR----LNTGEIWVLGGKPGTKGSG----VPGKRVGYMPQEI--ALYGEFSIKE 85 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~----~~~G~i~~~g~~~~~~~~~----~~~~~ig~v~Q~~--~~~~~~tv~e 85 (125)
++||++||+|+||||||||+++|+|+++ +++|+|.++|.++...... .+++.|+||||++ .+++.+++.+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~ 110 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGF 110 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHH
Confidence 9999999999999999999999999987 4899999999887543211 1235799999997 5789999999
Q ss_pred HHHHHHHHh-CCChHHHHHHHHHHHHhCCCCc
Q psy340 86 TMMYFGWIF-GMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 86 ~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
++....... +....+..+++.++++.++|++
T Consensus 111 ~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~ 142 (326)
T PRK11022 111 QIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD 142 (326)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC
Confidence 887655443 3445566788999999999964
No 201
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.1e-21 Score=140.02 Aligned_cols=113 Identities=25% Similarity=0.274 Sum_probs=82.7
Q ss_pred ccccchhhhhcc---------ccCCCcEEEEECCCCCCHHHHHHHHhCCCc--C---CceeEEEcCccCCCC--CCCcCC
Q psy340 2 KTNTNTKKKKKK---------KKKKKKKYGLLGASGCGKTTLLSCIVGRRR--L---NTGEIWVLGGKPGTK--GSGVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~---------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~--~---~~G~i~~~g~~~~~~--~~~~~~ 65 (125)
+.++|++++-.. .+++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.++... .....+
T Consensus 7 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (253)
T PRK14261 7 LSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALR 86 (253)
T ss_pred EEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhh
Confidence 455666655322 239999999999999999999999999875 3 489999999876432 112234
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHHHHhCCC-hHHHHHHHHHHHHhCCCC
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGME-TPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~ 115 (125)
+.++|++|++.+++. ||.||+.+....++.. ..+..+.+.++++.+++.
T Consensus 87 ~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 136 (253)
T PRK14261 87 RKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALW 136 (253)
T ss_pred ceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCc
Confidence 679999999988875 9999999865544322 234455677788888773
No 202
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.85 E-value=4.2e-21 Score=141.84 Aligned_cols=100 Identities=23% Similarity=0.273 Sum_probs=78.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCCeEEEEccCc--ccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKRVGYMPQEI--ALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~ 90 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...... ..++.++|++|++ .+++..++.+++.+.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~ 115 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREP 115 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999866432111 1245799999997 466788999998764
Q ss_pred HHH-hCCChHHHHHHHHHHHHhCCCC
Q psy340 91 GWI-FGMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 91 ~~~-~~~~~~~~~~~~~~~l~~~~L~ 115 (125)
... ......+..+++.++++.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~gl~ 141 (268)
T PRK10419 116 LRHLLSLDKAERLARASEMLRAVDLD 141 (268)
T ss_pred HHhhccCCHHHHHHHHHHHHHHcCCC
Confidence 332 2333444456788999999995
No 203
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.8e-21 Score=141.89 Aligned_cols=113 Identities=21% Similarity=0.162 Sum_probs=81.6
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCceeEEEcCccCCCCC--CCcCC
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRR-----LNTGEIWVLGGKPGTKG--SGVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~-----~~~G~i~~~g~~~~~~~--~~~~~ 65 (125)
+.++|++++-..+ +++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++.... ....+
T Consensus 22 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (268)
T PRK14248 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLR 101 (268)
T ss_pred EEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHh
Confidence 4556666543222 28999999999999999999999999864 68999999998764311 11234
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHHHHhCCC-hHHHHHHHHHHHHhCCCC
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGME-TPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~ 115 (125)
+.++|++|++.+++. |+.||+.+........ .....+.+.++++.+++.
T Consensus 102 ~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 151 (268)
T PRK14248 102 REIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALW 151 (268)
T ss_pred ccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC
Confidence 679999999988875 9999998764333322 223345567788888873
No 204
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.2e-21 Score=140.24 Aligned_cols=114 Identities=25% Similarity=0.208 Sum_probs=83.0
Q ss_pred Cccccchhhhhcc---------ccCCCcEEEEECCCCCCHHHHHHHHhCC---CcC--CceeEEEcCccCCCCC--CCcC
Q psy340 1 MKTNTNTKKKKKK---------KKKKKKKYGLLGASGCGKTTLLSCIVGR---RRL--NTGEIWVLGGKPGTKG--SGVP 64 (125)
Q Consensus 1 ~~~~~~~~~~~~~---------~~~~Ge~~~liG~nGsGKSTLL~~i~g~---~~~--~~G~i~~~g~~~~~~~--~~~~ 64 (125)
|+.++|.+++-.. .+++||+++|+||||||||||+++|+|+ .+| ++|+|.++|.++.... ....
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDEL 82 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHH
Confidence 3456666655322 2389999999999999999999999997 354 5899999998764321 1123
Q ss_pred CCeEEEEccCcccCCCCCHHHHHHHHHHHhCCC-hHHHHHHHHHHHHhCCCC
Q psy340 65 GKRVGYMPQEIALYGEFSIKETMMYFGWIFGME-TPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 65 ~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~ 115 (125)
++.++|++|++.+++ .|+.||+.+....++.. .....+.+.++++.+++.
T Consensus 83 ~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 133 (250)
T PRK14245 83 RKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALW 133 (250)
T ss_pred hhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCC
Confidence 457999999988886 59999998765444332 233456678889999884
No 205
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.5e-21 Score=140.88 Aligned_cols=99 Identities=21% Similarity=0.277 Sum_probs=76.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCCC--CCCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGTK--GSGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~~--~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++... .....+..++|++|++.+++ +|+.||+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~ 109 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVA 109 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHH
Confidence 89999999999999999999999999875 489999999876421 11123457999999998887 89999998
Q ss_pred HHHHHhC-CChHHHHHHHHHHHHhCCCC
Q psy340 89 YFGWIFG-METPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 89 ~~~~~~~-~~~~~~~~~~~~~l~~~~L~ 115 (125)
+....++ .+..+..+++.++++.+++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 137 (259)
T PRK14260 110 YGVRISAKLPQADLDEIVESALKGAALW 137 (259)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCc
Confidence 7544333 23334456677888888873
No 206
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=6e-21 Score=139.49 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=83.3
Q ss_pred ccccchhhhhcc---------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCC-----ceeEEEcCccCCCCC--CCcCC
Q psy340 2 KTNTNTKKKKKK---------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLN-----TGEIWVLGGKPGTKG--SGVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~---------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~-----~G~i~~~g~~~~~~~--~~~~~ 65 (125)
+.++|++++-.. .+.+|++++|+||||||||||+++|+|+.+|+ +|+|.++|.++.... ....+
T Consensus 5 l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 84 (251)
T PRK14249 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLR 84 (251)
T ss_pred EEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhh
Confidence 456677665432 23899999999999999999999999999987 699999998764311 11235
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHHHHhCCCh-HHHHHHHHHHHHhCCCC
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGMET-PEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~ 115 (125)
+.++|++|++.+++. |+.||+.+....++... .+..+.+.++++.+++.
T Consensus 85 ~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 134 (251)
T PRK14249 85 KRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALW 134 (251)
T ss_pred ceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCc
Confidence 679999999988875 99999987654433322 23345667777777764
No 207
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.9e-21 Score=140.63 Aligned_cols=98 Identities=24% Similarity=0.343 Sum_probs=77.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCCC--CCCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGTK--GSGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~~--~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... .....++.++|++|++.++ .+|+.||+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~ 110 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVA 110 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHH
Confidence 99999999999999999999999999976 799999999876421 1112346799999998877 589999998
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCC
Q psy340 89 YFGWIFGMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~L~ 115 (125)
+....+.. ..+..+.+.++++.+++.
T Consensus 111 ~~~~~~~~-~~~~~~~~~~~l~~~~l~ 136 (261)
T PRK14263 111 FGLRLNRY-KGDLGDRVKHALQGAALW 136 (261)
T ss_pred HHHhhcCc-hHHHHHHHHHHHHHcCCc
Confidence 76544332 234456788889999884
No 208
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.85 E-value=6.1e-21 Score=144.89 Aligned_cols=101 Identities=19% Similarity=0.270 Sum_probs=82.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCC---ceeEEEcCccCCCCCCC----cCCCeEEEEccCc--ccCCCCCHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN---TGEIWVLGGKPGTKGSG----VPGKRVGYMPQEI--ALYGEFSIKET 86 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~---~G~i~~~g~~~~~~~~~----~~~~~ig~v~Q~~--~~~~~~tv~e~ 86 (125)
++||++||+|+||||||||+++|+|+.+|. +|+|.|+|.++...... .+++.|+||||++ .+++.+++.++
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~ 119 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQ 119 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHH
Confidence 899999999999999999999999999986 99999999887543221 1235799999998 68899999999
Q ss_pred HHHHHHHh-CCChHHHHHHHHHHHHhCCCCc
Q psy340 87 MMYFGWIF-GMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 87 l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
+......+ +....+..+++.++++.++|++
T Consensus 120 i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~ 150 (330)
T PRK09473 120 LMEVLMLHKGMSKAEAFEESVRMLDAVKMPE 150 (330)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC
Confidence 98765444 3445566678899999999964
No 209
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.85 E-value=2.6e-21 Score=154.11 Aligned_cols=109 Identities=25% Similarity=0.358 Sum_probs=82.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC--cCCceeEEEcC-----------------------ccCC-------CCCC--
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR--RLNTGEIWVLG-----------------------GKPG-------TKGS-- 61 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~--~~~~G~i~~~g-----------------------~~~~-------~~~~-- 61 (125)
++|++++|+||||||||||+++|+|+. +|++|+|.+++ .++. ....
T Consensus 24 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 103 (520)
T TIGR03269 24 EEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKL 103 (520)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHH
Confidence 899999999999999999999999997 79999999972 1110 0000
Q ss_pred -CcCCCeEEEEccC-cccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 62 -GVPGKRVGYMPQE-IALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 62 -~~~~~~ig~v~Q~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
...++.++|+||+ +.+++.+|+.|++.+.....+.+..+..+++.++++.++|++ .++.+.+|
T Consensus 104 ~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 169 (520)
T TIGR03269 104 RRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDL 169 (520)
T ss_pred HHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccC
Confidence 0123569999997 578888999999988655555555556678899999999975 35555544
No 210
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.85 E-value=5.1e-21 Score=152.76 Aligned_cols=108 Identities=17% Similarity=0.243 Sum_probs=83.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCCeEEEEccCc--ccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKRVGYMPQEI--ALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~ 90 (125)
++||++||+||||||||||+++|+|+.+ ++|+|+++|.++...... ..++.++||||++ .+++.+||.||+.+.
T Consensus 310 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~ 388 (529)
T PRK15134 310 RPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEG 388 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHH
Confidence 8999999999999999999999999985 899999999876432211 1245799999997 478889999999886
Q ss_pred HHHhC--CChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 91 GWIFG--METPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 91 ~~~~~--~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
...+. .+..+..+++.++++.++|+ . .++.+.+|
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 426 (529)
T PRK15134 389 LRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEF 426 (529)
T ss_pred HHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccC
Confidence 54332 23344456788999999996 3 45655554
No 211
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8.3e-21 Score=139.67 Aligned_cols=99 Identities=25% Similarity=0.362 Sum_probs=77.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCC-----ceeEEEcCccCCCC--CCCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN-----TGEIWVLGGKPGTK--GSGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~-----~G~i~~~g~~~~~~--~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.++... .....++.++|++|++.+++ .|+.||+.
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~ 109 (261)
T PRK14258 31 YQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVA 109 (261)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHH
Confidence 899999999999999999999999999885 89999999875321 11223467999999988887 89999998
Q ss_pred HHHHHhCC-ChHHHHHHHHHHHHhCCCC
Q psy340 89 YFGWIFGM-ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 89 ~~~~~~~~-~~~~~~~~~~~~l~~~~L~ 115 (125)
+.....+. +..+..+++.++++.+++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 137 (261)
T PRK14258 110 YGVKIVGWRPKLEIDDIVESALKDADLW 137 (261)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHcCCc
Confidence 76443332 2334456678888888874
No 212
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.2e-20 Score=153.36 Aligned_cols=109 Identities=18% Similarity=0.207 Sum_probs=84.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCC----------CCC----CcCCCeEEEEccCc--ccCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT----------KGS----GVPGKRVGYMPQEI--ALYG 79 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~----------~~~----~~~~~~ig~v~Q~~--~~~~ 79 (125)
++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ... ..+++.||||+|++ .+++
T Consensus 40 ~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~ 119 (623)
T PRK10261 40 QRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNP 119 (623)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCC
Confidence 8999999999999999999999999999999999998753310 000 01234799999997 6788
Q ss_pred CCCHHHHHHHHHHHh-CCChHHHHHHHHHHHHhCCCCc----cchhhhhc
Q psy340 80 EFSIKETMMYFGWIF-GMETPEIDDRLQFLLNFLDLPS----QSRLVKNL 124 (125)
Q Consensus 80 ~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~----~~~~~~~L 124 (125)
.+||.||+.+....+ +....+..+++.++++.++|++ .++.+.+|
T Consensus 120 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 120 VFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 899999999876543 4455566788999999999953 24555443
No 213
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.1e-21 Score=134.13 Aligned_cols=72 Identities=39% Similarity=0.707 Sum_probs=63.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ...++.++|++|++.+++.+|+.||+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~~~ 95 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK 95 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEEecCCccccCCcHHHHhh
Confidence 899999999999999999999999999999999999998764322 223467999999999999999999975
No 214
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.2e-20 Score=137.90 Aligned_cols=99 Identities=23% Similarity=0.333 Sum_probs=76.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCceeEEEcCccCCCCCC--CcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR-----LNTGEIWVLGGKPGTKGS--GVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~-----~~~G~i~~~g~~~~~~~~--~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
.+||+++|+||||||||||+++|+|+.+ |++|+|.++|.++..... ...++.++|+||++.+++. |+.||+.
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~ 107 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVA 107 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHH
Confidence 8999999999999999999999999976 479999999976543211 1234679999999988876 9999998
Q ss_pred HHHHHhCC--ChHHHHHHHHHHHHhCCCC
Q psy340 89 YFGWIFGM--ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 89 ~~~~~~~~--~~~~~~~~~~~~l~~~~L~ 115 (125)
+....++. ...+..+.+.++++.+++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 136 (251)
T PRK14244 108 YGPKLHGLAKNKKKLDEIVEKSLTSVGLW 136 (251)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHcCCC
Confidence 75433332 1234455678889999985
No 215
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=9.4e-21 Score=138.44 Aligned_cols=113 Identities=23% Similarity=0.276 Sum_probs=80.9
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCc--C---CceeEEEcCccCCCCC--CCcC
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRR--L---NTGEIWVLGGKPGTKG--SGVP 64 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~--~---~~G~i~~~g~~~~~~~--~~~~ 64 (125)
|+.++|++++-..+ +.+||+++|+||||||||||+++|+|+.+ | ++|+|.++|.++.... ....
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14255 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQL 84 (252)
T ss_pred eEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHh
Confidence 34556666554322 38999999999999999999999999864 4 5899999998764211 1123
Q ss_pred CCeEEEEccCcccCCCCCHHHHHHHHHHHhCCC-hHHHHHHHHHHHHhCCC
Q psy340 65 GKRVGYMPQEIALYGEFSIKETMMYFGWIFGME-TPEIDDRLQFLLNFLDL 114 (125)
Q Consensus 65 ~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L 114 (125)
++.++|++|++.+++ .|+.+|+.+.....+.. .....+++.++++.+++
T Consensus 85 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l 134 (252)
T PRK14255 85 RKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAI 134 (252)
T ss_pred cCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC
Confidence 467999999998887 69999998765444322 22234556667777765
No 216
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.4e-21 Score=136.42 Aligned_cols=89 Identities=20% Similarity=0.189 Sum_probs=73.2
Q ss_pred ccccchhhhhccc-------------cCCCcEEEEECCCCCCHHHHHHHHhCCCc---CCceeEEEcCccCCCCCCCcCC
Q psy340 2 KTNTNTKKKKKKK-------------KKKKKKYGLLGASGCGKTTLLSCIVGRRR---LNTGEIWVLGGKPGTKGSGVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~~-------------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 65 (125)
++++|++|.-.+. +++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++.... ...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 5667777665432 29999999999999999999999999998 89999999998765422 1234
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
+.++|++|++.+++.+||.||+.+..
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~ 108 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFAL 108 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhh
Confidence 67999999998999999999998754
No 217
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-20 Score=140.70 Aligned_cols=99 Identities=23% Similarity=0.300 Sum_probs=76.2
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCceeEEEcCccCCCCC--CCcCCCeEEEEccCcccCCCCCHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRR-----LNTGEIWVLGGKPGTKG--SGVPGKRVGYMPQEIALYGEFSIKETM 87 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~-----~~~G~i~~~g~~~~~~~--~~~~~~~ig~v~Q~~~~~~~~tv~e~l 87 (125)
+.+||+++|+||||||||||+++|+|+.+ |++|+|.++|.++.... ....++.++|++|++.+++. |+.||+
T Consensus 62 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl 140 (286)
T PRK14275 62 ILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNI 140 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHH
Confidence 38999999999999999999999999854 49999999998764321 11234679999999988875 999999
Q ss_pred HHHHHHhCCC-hHHHHHHHHHHHHhCCC
Q psy340 88 MYFGWIFGME-TPEIDDRLQFLLNFLDL 114 (125)
Q Consensus 88 ~~~~~~~~~~-~~~~~~~~~~~l~~~~L 114 (125)
.+....++.. .....+++.++++.+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l 168 (286)
T PRK14275 141 AYGPRLHGINDKKQLEEIVEKSLRKAAL 168 (286)
T ss_pred HhHHHhcCCCcHHHHHHHHHHHHHHhCC
Confidence 9865444332 23345667788888887
No 218
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.84 E-value=1.1e-21 Score=156.37 Aligned_cols=94 Identities=21% Similarity=0.297 Sum_probs=76.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....++.++||+|++.+|+. |++||+.+.. .
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~--~ 433 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDT-TVRDNLRLGR--P 433 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccc-cHHHHHhccC--C
Confidence 389999999999999999999999999999999999999888765 55566789999999998876 9999999742 1
Q ss_pred CCChHHHHHHHHHHHHhCCCCc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
..+ .+++.++++..++++
T Consensus 434 ~~~----~e~i~~al~~a~l~~ 451 (529)
T TIGR02868 434 DAT----DEELWAALERVGLAD 451 (529)
T ss_pred CCC----HHHHHHHHHHcCCHH
Confidence 111 344666777776643
No 219
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.84 E-value=8.6e-22 Score=131.42 Aligned_cols=90 Identities=28% Similarity=0.494 Sum_probs=73.6
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
.+++|++++|+|+||||||||+++|+|..+|++|+|.++|.++........+..++|++|++.+++.+|+.++
T Consensus 7 ~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~------- 79 (137)
T PF00005_consen 7 EIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN------- 79 (137)
T ss_dssp EEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-------
T ss_pred EEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence 4689999999999999999999999999999999999999887652222345689999999999999999998
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
...+++.++++.+++..
T Consensus 80 ------~~~~~~~~~l~~l~~~~ 96 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED 96 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG
T ss_pred ------ccccccccccccccccc
Confidence 22344666777776643
No 220
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.6e-21 Score=140.11 Aligned_cols=112 Identities=20% Similarity=0.215 Sum_probs=80.2
Q ss_pred ccccchhhhhcc---------ccCCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCceeEEEcCccCCCC--CCCcCC
Q psy340 2 KTNTNTKKKKKK---------KKKKKKKYGLLGASGCGKTTLLSCIVGRRR-----LNTGEIWVLGGKPGTK--GSGVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~---------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~-----~~~G~i~~~g~~~~~~--~~~~~~ 65 (125)
+.++|++++-.. .+++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++... .....+
T Consensus 25 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 104 (271)
T PRK14238 25 FDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104 (271)
T ss_pred EEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHh
Confidence 456666654322 239999999999999999999999999987 6999999999876421 111234
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHHHHhCCCh-HHHHHHHHHHHHhCCC
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGMET-PEIDDRLQFLLNFLDL 114 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L 114 (125)
+.++|++|++.+++. |+.||+.+....++... ....+.+.++++.+++
T Consensus 105 ~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (271)
T PRK14238 105 TNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAI 153 (271)
T ss_pred hhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCC
Confidence 679999999988874 99999987654433322 2234455666766643
No 221
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.84 E-value=1.7e-20 Score=149.50 Aligned_cols=100 Identities=24% Similarity=0.362 Sum_probs=77.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEc-Ccc---CCCCCC---CcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVL-GGK---PGTKGS---GVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~-g~~---~~~~~~---~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++ |.+ +..... ...++.++|++|++.+++.+||.|++.
T Consensus 308 ~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~ 387 (520)
T TIGR03269 308 KEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLT 387 (520)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHH
Confidence 9999999999999999999999999999999999996 542 111110 112356999999998899999999998
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCCc
Q psy340 89 YFGWIFGMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
+.... ..+..+..+++.++++.++|+.
T Consensus 388 ~~~~~-~~~~~~~~~~~~~~l~~~~l~~ 414 (520)
T TIGR03269 388 EAIGL-ELPDELARMKAVITLKMVGFDE 414 (520)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHhCCCCC
Confidence 75432 2333334567888999999963
No 222
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.84 E-value=1.4e-20 Score=137.52 Aligned_cols=109 Identities=19% Similarity=0.217 Sum_probs=78.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCcc-----CCCCCCC----cCCCeEEEEccCcc--cCCCCCHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK-----PGTKGSG----VPGKRVGYMPQEIA--LYGEFSIK 84 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~-----~~~~~~~----~~~~~ig~v~Q~~~--~~~~~tv~ 84 (125)
++|++++|+||||||||||+++|+|+.+|++|+|.++|.+ +...... ..++.++|++|++. +++.+++.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 106 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAG 106 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHH
Confidence 8999999999999999999999999999999999999865 4321111 12356999999974 45667889
Q ss_pred HHHHHHHHHhC-CChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 85 ETMMYFGWIFG-METPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 85 e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
+++.+...... ....+..+.+.++++.+++. . .++.+.+|
T Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~L 149 (253)
T TIGR02323 107 ANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAF 149 (253)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhc
Confidence 99875432221 11223456788899999995 2 34554443
No 223
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=139.29 Aligned_cols=99 Identities=28% Similarity=0.348 Sum_probs=77.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCceeEEEcCccCCCCC--CCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR-----LNTGEIWVLGGKPGTKG--SGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~-----~~~G~i~~~g~~~~~~~--~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++.... ....++.++|++|++.+++. |+.||+.
T Consensus 49 ~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~ 127 (272)
T PRK14236 49 PKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVV 127 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHH
Confidence 8999999999999999999999999987 48999999998764311 11234679999999988886 9999998
Q ss_pred HHHHHhCCC-hHHHHHHHHHHHHhCCCC
Q psy340 89 YFGWIFGME-TPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 89 ~~~~~~~~~-~~~~~~~~~~~l~~~~L~ 115 (125)
+.....+.. .....+.+.++++.+++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 155 (272)
T PRK14236 128 YGLRLQGINNRRVLDEAVERSLRGAALW 155 (272)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHcCCC
Confidence 765444332 233345677888888874
No 224
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=3.5e-21 Score=134.40 Aligned_cols=73 Identities=30% Similarity=0.494 Sum_probs=63.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC--CCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG--SGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~--~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ....++.++|++|++.+++.+|+.|++.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~ 98 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIA 98 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHhee
Confidence 899999999999999999999999999999999999998764322 1233568999999999888999999975
No 225
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=1.5e-20 Score=150.15 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=83.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCCCCCC----cCCCeEEEEccCcc--cCCCCCHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGTKGSG----VPGKRVGYMPQEIA--LYGEFSIK 84 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~~~~~----~~~~~ig~v~Q~~~--~~~~~tv~ 84 (125)
++||++||+||||||||||+++|+|+++| ++|+|.++|.++...... .+++.+|||||++. +++.+++.
T Consensus 33 ~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~ 112 (529)
T PRK15134 33 EAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLE 112 (529)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHH
Confidence 89999999999999999999999999986 799999999876432111 12357999999974 66778999
Q ss_pred HHHHHHHHH-hCCChHHHHHHHHHHHHhCCCCc----cchhhhhc
Q psy340 85 ETMMYFGWI-FGMETPEIDDRLQFLLNFLDLPS----QSRLVKNL 124 (125)
Q Consensus 85 e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~----~~~~~~~L 124 (125)
+++.+.... .+.+..+..+++.++++.++|++ .++.+.+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 113 KQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCccc
Confidence 998764432 23445556778899999999964 24555544
No 226
>PLN03211 ABC transporter G-25; Provisional
Probab=99.84 E-value=1.5e-20 Score=153.52 Aligned_cols=98 Identities=29% Similarity=0.422 Sum_probs=81.0
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCC--ceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLN--TGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~--~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
+++||++||+|||||||||||++|+|..+|. +|+|.++|.++.. ...+.++||+|++.+++.+||+|++.+...
T Consensus 91 i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~ 166 (659)
T PLN03211 91 ASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLTVRETLVFCSL 166 (659)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCCHHHHHHHHHH
Confidence 3999999999999999999999999999885 8999999987532 123569999999999999999999998664
Q ss_pred Hh---CCChHHHHHHHHHHHHhCCCCc
Q psy340 93 IF---GMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 93 ~~---~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
.+ ....++..++++++++.+||++
T Consensus 167 ~~~~~~~~~~~~~~~v~~~l~~lgL~~ 193 (659)
T PLN03211 167 LRLPKSLTKQEKILVAESVISELGLTK 193 (659)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCChh
Confidence 43 1233455677899999999965
No 227
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.8e-20 Score=142.23 Aligned_cols=101 Identities=19% Similarity=0.145 Sum_probs=78.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc----CCceeEEEcCccCCCCCCC----cCCCeEEEEccCcc--cCCCCCHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR----LNTGEIWVLGGKPGTKGSG----VPGKRVGYMPQEIA--LYGEFSIKE 85 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~----~~~G~i~~~g~~~~~~~~~----~~~~~ig~v~Q~~~--~~~~~tv~e 85 (125)
.+||++||+|+||||||||+++|+|+.+ |++|+|.|+|+++...... .+++.|+||||++. +++.+||.+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~ 110 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGR 110 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHH
Confidence 9999999999999999999999999986 5899999999887543211 12457999999975 678899999
Q ss_pred HHHHHHHHh---C---CChHHHHHHHHHHHHhCCCCc
Q psy340 86 TMMYFGWIF---G---METPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 86 ~l~~~~~~~---~---~~~~~~~~~~~~~l~~~~L~~ 116 (125)
++......+ + ....+..+++.++++.++|.+
T Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~ 147 (330)
T PRK15093 111 QLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKD 147 (330)
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCC
Confidence 997643211 1 112344567889999999964
No 228
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.84 E-value=1.5e-20 Score=153.30 Aligned_cols=123 Identities=19% Similarity=0.203 Sum_probs=94.9
Q ss_pred Cccccchhhhhcc-------------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCc----
Q psy340 1 MKTNTNTKKKKKK-------------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGV---- 63 (125)
Q Consensus 1 ~~~~~~~~~~~~~-------------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~---- 63 (125)
|+.++|++++-.. .+++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.......
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 3556777665421 13999999999999999999999999999999999999998765432211
Q ss_pred CCCeEEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 64 PGKRVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 64 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
+++.++|++|++.+++++|+.||+.+.....+....+..+++.++++.++|.+ .++.+..
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 144 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQ 144 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCccc
Confidence 24679999999999999999999987654444445566678889999999965 3444443
No 229
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=149.37 Aligned_cols=110 Identities=17% Similarity=0.289 Sum_probs=83.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEEEEccCc---ccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYMPQEI---ALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig~v~Q~~---~~~~~~tv~e~l~~~ 90 (125)
+.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.+|||+|++ .+++.+|+.|++.+.
T Consensus 275 i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 354 (501)
T PRK10762 275 LRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLT 354 (501)
T ss_pred EcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhh
Confidence 38999999999999999999999999999999999999987643211 11235799999996 578889999999874
Q ss_pred HH--Hh---C-CChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 91 GW--IF---G-METPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 91 ~~--~~---~-~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
.. .. + ....+..+++.++++.++|. . .++.+.+|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 396 (501)
T PRK10762 355 ALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLL 396 (501)
T ss_pred hhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhC
Confidence 31 11 1 12234456788999999994 3 56666554
No 230
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.83 E-value=2.2e-20 Score=150.07 Aligned_cols=79 Identities=34% Similarity=0.406 Sum_probs=67.4
Q ss_pred Cccccchhhhhc-cc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEE
Q psy340 1 MKTNTNTKKKKK-KK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGY 70 (125)
Q Consensus 1 ~~~~~~~~~~~~-~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~ 70 (125)
|+.++|+++.-. ++ +++|++++|+|||||||||||++|+|+.+|++|+|.+++ ...+||
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~~ 74 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVGY 74 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 356777777654 22 299999999999999999999999999999999999853 146999
Q ss_pred EccCcccCCCCCHHHHHHHH
Q psy340 71 MPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 71 v~Q~~~~~~~~tv~e~l~~~ 90 (125)
|+|++.+++.+||.||+.+.
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~ 94 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEG 94 (556)
T ss_pred EecCCCCCCCCcHHHHHHHh
Confidence 99999999999999999864
No 231
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.83 E-value=9.2e-21 Score=150.33 Aligned_cols=109 Identities=11% Similarity=0.211 Sum_probs=82.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcC-CceeEEEcCccCCCCCC-CcCCCeEEEEccCc---ccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL-NTGEIWVLGGKPGTKGS-GVPGKRVGYMPQEI---ALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-~~G~i~~~g~~~~~~~~-~~~~~~ig~v~Q~~---~~~~~~tv~e~l~~~ 90 (125)
++||+++|+|||||||||||++|+|+.+| ++|+|.++|.++..... ...++.++|++|++ .+++.+||.+++.+.
T Consensus 284 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~ 363 (500)
T TIGR02633 284 RRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLS 363 (500)
T ss_pred eCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcch
Confidence 99999999999999999999999999985 89999999987643211 12245799999996 578899999999874
Q ss_pred HH--Hh---CCChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 91 GW--IF---GMETPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 91 ~~--~~---~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
.. .. .....+.++++.++++.+++.. .++.+.+|
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 404 (500)
T TIGR02633 364 VLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRL 404 (500)
T ss_pred hhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccC
Confidence 31 11 1122344567889999999953 45665554
No 232
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.83 E-value=2.1e-21 Score=139.77 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=62.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
++|++++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++ .|+.||+.+.
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~ 111 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYG 111 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccc
Confidence 8999999999999999999999999999999999999976543222223467999999988776 5999999764
No 233
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=5.6e-21 Score=138.09 Aligned_cols=75 Identities=23% Similarity=0.363 Sum_probs=63.1
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++|++++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++ .|+.||+.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~ 99 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYG 99 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhcc
Confidence 38999999999999999999999999999999999999976543221223457999999988776 6999999864
No 234
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.83 E-value=3.8e-20 Score=135.14 Aligned_cols=100 Identities=17% Similarity=0.128 Sum_probs=76.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC--CcCCceeEEEcCccCCCCCCCcCC-CeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGR--RRLNTGEIWVLGGKPGTKGSGVPG-KRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~--~~~~~G~i~~~g~~~~~~~~~~~~-~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
++||++||+||||||||||+++|+|+ .+|++|+|.++|.++......... ..++|++|++.+++.+++.+++.+...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~ 110 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYN 110 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhh
Confidence 89999999999999999999999998 579999999999876542221222 248899999999999999999876432
Q ss_pred Hh----CC---ChHHHHHHHHHHHHhCCCC
Q psy340 93 IF----GM---ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 93 ~~----~~---~~~~~~~~~~~~l~~~~L~ 115 (125)
.. .. ...+..+++.++++.+++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 140 (252)
T CHL00131 111 SKRKFQGLPELDPLEFLEIINEKLKLVGMD 140 (252)
T ss_pred hhhcccccccccHHHHHHHHHHHHHHcCCc
Confidence 11 11 1223346678889999996
No 235
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1e-20 Score=132.25 Aligned_cols=105 Identities=19% Similarity=0.264 Sum_probs=83.3
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+.+||++.|.||||||||||||+|+|+++|++|+|.|+|..+...... ..+.+-|+-..+.+-+.+|+.||+.|...++
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~-~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~ 103 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES-YHQALLYLGHQPGIKTELTALENLHFWQRFH 103 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhh-HHHHHHHhhccccccchhhHHHHHHHHHHHh
Confidence 389999999999999999999999999999999999998776543211 2356788888889999999999999988777
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
+. ...+.+.++++.+||.. .+..+.+
T Consensus 104 ~~---~~~~~i~~Al~~vgL~g~~dlp~~~ 130 (209)
T COG4133 104 GS---GNAATIWEALAQVGLAGLEDLPVGQ 130 (209)
T ss_pred CC---CchhhHHHHHHHcCcccccccchhh
Confidence 64 12345777889999865 3444443
No 236
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.1e-20 Score=137.78 Aligned_cols=97 Identities=24% Similarity=0.340 Sum_probs=72.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCceeEEEcCccCCCC--CCCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR-----LNTGEIWVLGGKPGTK--GSGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~-----~~~G~i~~~g~~~~~~--~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... .....++.++|++|++.+++ .|+.||+.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~ 112 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIA 112 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHHHH
Confidence 8999999999999999999999999975 4799999999876321 11123457999999988887 49999998
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCC
Q psy340 89 YFGWIFGMETPEIDDRLQFLLNFLDL 114 (125)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~L 114 (125)
+.....+.. .+..+++.++++.+++
T Consensus 113 ~~~~~~~~~-~~~~~~~~~~l~~~~l 137 (264)
T PRK14243 113 YGARINGYK-GDMDELVERSLRQAAL 137 (264)
T ss_pred hhhhhcCcc-hHHHHHHHHHHHHhCc
Confidence 765433221 2334556666777766
No 237
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.1e-20 Score=148.62 Aligned_cols=109 Identities=15% Similarity=0.309 Sum_probs=82.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-CCceeEEEcCccCCCCCC-CcCCCeEEEEccCc---ccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR-LNTGEIWVLGGKPGTKGS-GVPGKRVGYMPQEI---ALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~-~~~G~i~~~g~~~~~~~~-~~~~~~ig~v~Q~~---~~~~~~tv~e~l~~~ 90 (125)
++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++..... ...++.++|++|++ .+++.+|+.||+.+.
T Consensus 286 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 365 (506)
T PRK13549 286 RRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLA 365 (506)
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhh
Confidence 9999999999999999999999999998 599999999987642211 11235699999995 478889999999874
Q ss_pred HH--HhC---CChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 91 GW--IFG---METPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 91 ~~--~~~---~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
.. +.. ....+..+++.++++.+++. + .++.+.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 406 (506)
T PRK13549 366 ALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARL 406 (506)
T ss_pred hhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccC
Confidence 31 211 12334456788999999995 3 46666554
No 238
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.83 E-value=5.5e-20 Score=132.67 Aligned_cols=110 Identities=23% Similarity=0.349 Sum_probs=80.2
Q ss_pred cccchhhhhcccc---------CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEcc
Q psy340 3 TNTNTKKKKKKKK---------KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73 (125)
Q Consensus 3 ~~~~~~~~~~~~~---------~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q 73 (125)
.+++++++...+. ++||+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..+
T Consensus 24 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~------------~~~ 91 (224)
T cd03220 24 GILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL------------LGL 91 (224)
T ss_pred hhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh------------hcc
Confidence 3456666554442 9999999999999999999999999999999999999875421 111
Q ss_pred CcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 74 EIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
...+++.+||.||+.+....++....+..+++.++++.+++++ .++.+.+|
T Consensus 92 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 143 (224)
T cd03220 92 GGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTY 143 (224)
T ss_pred cccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 1234567899999988655544444555567888999999965 35554443
No 239
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.3e-20 Score=138.30 Aligned_cols=111 Identities=23% Similarity=0.233 Sum_probs=79.4
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCCC--CCCcCC
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGTK--GSGVPG 65 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~~--~~~~~~ 65 (125)
+.++|++++-.++ +++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++... .....+
T Consensus 21 l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~ 100 (274)
T PRK14265 21 FEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100 (274)
T ss_pred EEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHh
Confidence 4556666654332 299999999999999999999999999753 689999999876421 111234
Q ss_pred CeEEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q psy340 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114 (125)
Q Consensus 66 ~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L 114 (125)
+.++|+||++.+++. |+.+|+.+........ ....+.+.++++.+++
T Consensus 101 ~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l 147 (274)
T PRK14265 101 RQVGMVFQRPNPFPK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAI 147 (274)
T ss_pred hcEEEEccCCccccc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHccc
Confidence 679999999888875 9999998754333221 2223445667777776
No 240
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.83 E-value=6.5e-20 Score=137.04 Aligned_cols=106 Identities=25% Similarity=0.340 Sum_probs=88.0
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCc-C----CceeEEEcCccCCCCCC----CcCCCeEEEEccCc--ccCCCCCH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRR-L----NTGEIWVLGGKPGTKGS----GVPGKRVGYMPQEI--ALYGEFSI 83 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~-~----~~G~i~~~g~~~~~~~~----~~~~~~ig~v~Q~~--~~~~~~tv 83 (125)
+.+||++||||+|||||||+.++|+|+++ | .+|+|.|+|+++..... ..+++.|+||||++ .+.|.++|
T Consensus 28 i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~I 107 (316)
T COG0444 28 LKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTI 107 (316)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhH
Confidence 38999999999999999999999999997 3 57999999998765433 34577999999997 78899999
Q ss_pred HHHHHHHHHHhC-C-ChHHHHHHHHHHHHhCCCCccchh
Q psy340 84 KETMMYFGWIFG-M-ETPEIDDRLQFLLNFLDLPSQSRL 120 (125)
Q Consensus 84 ~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~~~L~~~~~~ 120 (125)
.+.+.-....+. . ..++..+++.++|+.++|++.++.
T Consensus 108 g~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~ 146 (316)
T COG0444 108 GDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERR 146 (316)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 999988776554 3 356778899999999999875433
No 241
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.8e-20 Score=136.35 Aligned_cols=100 Identities=26% Similarity=0.326 Sum_probs=74.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCC---C-CCCcCCCeEEEEccCcccCCCCCHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGT---K-GSGVPGKRVGYMPQEIALYGEFSIKE 85 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~---~-~~~~~~~~ig~v~Q~~~~~~~~tv~e 85 (125)
+++||+++|+||||||||||+++|+|+..| ++|+|.++|.++.. . .....++.++|++|++.+++. |+.|
T Consensus 39 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~e 117 (265)
T PRK14252 39 VHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFE 117 (265)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHH
Confidence 389999999999999999999999999874 79999999875431 1 111234579999999988875 9999
Q ss_pred HHHHHHHHhCCChH-HHHHHHHHHHHhCCCC
Q psy340 86 TMMYFGWIFGMETP-EIDDRLQFLLNFLDLP 115 (125)
Q Consensus 86 ~l~~~~~~~~~~~~-~~~~~~~~~l~~~~L~ 115 (125)
|+.+.....+.... ...+.+.++++.+++.
T Consensus 118 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 148 (265)
T PRK14252 118 NVAYGLRIRGVKRRSILEERVENALRNAALW 148 (265)
T ss_pred HHHhHHHHcCCChHHHHHHHHHHHHHHcCCc
Confidence 99876544333222 2345677778777763
No 242
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.83 E-value=4.9e-20 Score=147.89 Aligned_cols=79 Identities=33% Similarity=0.393 Sum_probs=66.7
Q ss_pred Cccccchhhhhc-cc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEE
Q psy340 1 MKTNTNTKKKKK-KK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGY 70 (125)
Q Consensus 1 ~~~~~~~~~~~~-~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~ 70 (125)
|+.++|++|+-. .+ +++|++++|+|||||||||||++|+|+.+|++|+|.+++ ...|||
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~ 72 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVGY 72 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 355667766543 22 299999999999999999999999999999999999853 246999
Q ss_pred EccCcccCCCCCHHHHHHHH
Q psy340 71 MPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 71 v~Q~~~~~~~~tv~e~l~~~ 90 (125)
|+|++.+++.+||.||+.+.
T Consensus 73 v~Q~~~~~~~~tv~e~i~~~ 92 (552)
T TIGR03719 73 LPQEPQLDPTKTVRENVEEG 92 (552)
T ss_pred EeccCCCCCCCcHHHHHHHh
Confidence 99999999999999999864
No 243
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=2.8e-20 Score=134.51 Aligned_cols=95 Identities=27% Similarity=0.469 Sum_probs=79.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccC-cccCCCCCHHHHHHHHHHHh
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQE-IALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~-~~~~~~~tv~e~l~~~~~~~ 94 (125)
++||.+||||+|||||||||++|+|.++|++|+|.++|+- +.+... ..+.|.+|.+||+.+.+.+.
T Consensus 51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v-------------~~li~lg~Gf~pelTGreNi~l~~~~~ 117 (249)
T COG1134 51 YKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV-------------APLIELGAGFDPELTGRENIYLRGLIL 117 (249)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE-------------ehhhhcccCCCcccchHHHHHHHHHHh
Confidence 8999999999999999999999999999999999997642 222222 24567899999999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
++...++.+++++..+.-.|.+ .+.++++
T Consensus 118 G~~~~ei~~~~~eIieFaELG~fi~~Pvkt 147 (249)
T COG1134 118 GLTRKEIDEKVDEIIEFAELGDFIDQPVKT 147 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhCchhh
Confidence 9999999999999998888865 4555544
No 244
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.82 E-value=2.1e-20 Score=130.92 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=64.4
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEEEEccCc---ccCCCCCHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYMPQEI---ALYGEFSIKETMMY 89 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig~v~Q~~---~~~~~~tv~e~l~~ 89 (125)
.+++|++++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.++|++|++ .+++.+|+.||+.+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~ 101 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL 101 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHH
Confidence 348999999999999999999999999999999999999987654321 12345799999985 57888999999976
Q ss_pred H
Q psy340 90 F 90 (125)
Q Consensus 90 ~ 90 (125)
.
T Consensus 102 ~ 102 (182)
T cd03215 102 S 102 (182)
T ss_pred H
Confidence 4
No 245
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.82 E-value=6.7e-20 Score=134.14 Aligned_cols=96 Identities=23% Similarity=0.251 Sum_probs=73.8
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
..+.+||+++|+||||||||||+++|+|+.+|++|+|.++|. .++|++|++..++.+||.|++.+...
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q~~~~~~~~tv~e~l~~~~~ 87 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQYIKADYEGTVRDLLSSITK 87 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecccccCCCCCCHHHHHHHHhh
Confidence 345789999999999999999999999999999999998752 68999999887788999999876432
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 93 IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.... . ...+.++++.++|+. .++.+.+|
T Consensus 88 ~~~~-~---~~~~~~~l~~l~l~~~~~~~~~~L 116 (246)
T cd03237 88 DFYT-H---PYFKTEIAKPLQIEQILDREVPEL 116 (246)
T ss_pred hccc-c---HHHHHHHHHHcCCHHHhhCChhhC
Confidence 2211 1 123567888888864 34544443
No 246
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.82 E-value=7.9e-21 Score=153.24 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=77.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||+++|+|+||||||||+++|+|+++|++|+|.++|.++........++.|+||+|++.+|+. |+++|+.+..
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~--- 439 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR--- 439 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC---
Confidence 489999999999999999999999999999999999999987665444556889999999999987 9999999852
Q ss_pred CCChHHHHHHHHHHHHhCCCCc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
..+ .+++.++++.+++.+
T Consensus 440 ~~~----d~~i~~a~~~~gl~~ 457 (592)
T PRK10790 440 DIS----EEQVWQALETVQLAE 457 (592)
T ss_pred CCC----HHHHHHHHHHcCcHH
Confidence 222 234666777777653
No 247
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.5e-20 Score=146.45 Aligned_cols=79 Identities=27% Similarity=0.477 Sum_probs=67.4
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
|++++|++|.-..+ +++||+++|+|||||||||||++|+|+.+|++|+|.+++. ..++|+
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~ 69 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKL 69 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEE
Confidence 56677777654332 2999999999999999999999999999999999999751 359999
Q ss_pred ccCcccCCCCCHHHHHHHH
Q psy340 72 PQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~ 90 (125)
+|++.+++.+||.|++.+.
T Consensus 70 ~q~~~~~~~~tv~e~l~~~ 88 (530)
T PRK15064 70 RQDQFAFEEFTVLDTVIMG 88 (530)
T ss_pred eccCCcCCCCcHHHHHHHh
Confidence 9999889999999999864
No 248
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.82 E-value=1.2e-20 Score=135.28 Aligned_cols=94 Identities=19% Similarity=0.383 Sum_probs=70.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++|++++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++ .|+.|++.+....
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-- 104 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-- 104 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC--
Confidence 8999999999999999999999999999999999999976543211122457999999998776 6999998763211
Q ss_pred CChHHHHHHHHHHHHhCCCCc
Q psy340 96 METPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~ 116 (125)
. . .+.+.++++.+++.+
T Consensus 105 ~-~---~~~~~~~l~~~~l~~ 121 (220)
T cd03245 105 A-D---DERILRAAELAGVTD 121 (220)
T ss_pred C-C---HHHHHHHHHHcCcHH
Confidence 1 1 223455666666643
No 249
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.82 E-value=1.2e-20 Score=135.36 Aligned_cols=74 Identities=26% Similarity=0.398 Sum_probs=62.7
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
+++|++++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++ .|+.||+.+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~ 100 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDP 100 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCc
Confidence 38999999999999999999999999999999999999987643222233567999999988765 599999864
No 250
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.82 E-value=1.1e-20 Score=154.75 Aligned_cols=94 Identities=20% Similarity=0.197 Sum_probs=77.0
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||.+||+||||||||||+++|+|+++|++|+|.++|.++........++.||||+|++.+|+. |++||+.+...
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~-- 552 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP-- 552 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC--
Confidence 389999999999999999999999999999999999999988765444556889999999998875 99999987421
Q ss_pred CCChHHHHHHHHHHHHhCCCCc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
.+ .+++.++++..++.+
T Consensus 553 -~~----~e~i~~al~~a~l~~ 569 (686)
T TIGR03797 553 -LT----LDEAWEAARMAGLAE 569 (686)
T ss_pred -CC----HHHHHHHHHHcCcHH
Confidence 22 234566677777653
No 251
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.82 E-value=7.1e-20 Score=145.10 Aligned_cols=109 Identities=25% Similarity=0.330 Sum_probs=87.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC--CCcCCCeEEEEccCc--ccCCCCCHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG--SGVPGKRVGYMPQEI--ALYGEFSIKETMMYFG 91 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~--~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~ 91 (125)
.+||++||||+||||||||.|+|+|+.+|++|.|.++|.+..... ....++.+-+|||+| .+.|.+||.+.+..+.
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL 394 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL 394 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHH
Confidence 899999999999999999999999999999999999998721111 112345788888886 7899999999999887
Q ss_pred HHhCCC-hHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 92 WIFGME-TPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 92 ~~~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
..+... ..+.++++.++++.++|+. .+|++.+|
T Consensus 395 ~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~el 430 (539)
T COG1123 395 RIHGGGSGAERRARVAELLELVGLPPEFLDRYPHEL 430 (539)
T ss_pred hhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhc
Confidence 766533 4566678999999999975 36666554
No 252
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=1.2e-20 Score=128.55 Aligned_cols=107 Identities=22% Similarity=0.335 Sum_probs=84.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCC---ceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLN---TGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
+.+||++.|+|||||||||||..+.|.+.++ +|++.++++++...+. .++++|++||++-+||+++|.+|+.|..
T Consensus 25 ia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa--~qRq~GiLFQD~lLFphlsVg~Nl~fAl 102 (213)
T COG4136 25 IAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA--AQRQIGILFQDALLFPHLSVGQNLLFAL 102 (213)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch--hhhheeeeecccccccccccccceEEec
Confidence 3899999999999999999999999987654 8999999987655332 2478999999999999999999999854
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 92 WIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
... ...+..+..+..++++.+|.. .++.+.+|
T Consensus 103 p~~-~KG~aRr~~a~aAL~~~gL~g~f~~dP~tl 135 (213)
T COG4136 103 PAT-LKGNARRNAANAALERSGLDGAFHQDPATL 135 (213)
T ss_pred Ccc-cccHHHHhhHHHHHHHhccchhhhcChhhc
Confidence 221 223455667788999999976 46666554
No 253
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.82 E-value=4.3e-20 Score=149.95 Aligned_cols=103 Identities=20% Similarity=0.306 Sum_probs=84.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCC---ceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN---TGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
++||+++|+|||||||||||++|+|..++. +|+|.++|.++.. ...++.+|||+|++.+++.+||+||+.+.+.
T Consensus 49 ~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~---~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~ 125 (617)
T TIGR00955 49 KPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA---KEMRAISAYVQQDDLFIPTLTVREHLMFQAH 125 (617)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH---HHHhhhceeeccccccCccCcHHHHHHHHHh
Confidence 999999999999999999999999998774 7999999987542 1235679999999999999999999999776
Q ss_pred HhC---CChHHHHHHHHHHHHhCCCCc-cchhh
Q psy340 93 IFG---METPEIDDRLQFLLNFLDLPS-QSRLV 121 (125)
Q Consensus 93 ~~~---~~~~~~~~~~~~~l~~~~L~~-~~~~~ 121 (125)
.+. ...++..++++++++.++|.+ .+..+
T Consensus 126 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v 158 (617)
T TIGR00955 126 LRMPRRVTKKEKRERVDEVLQALGLRKCANTRI 158 (617)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHcCchhcCcCcc
Confidence 542 234566678999999999965 34444
No 254
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.82 E-value=8.6e-20 Score=129.06 Aligned_cols=74 Identities=32% Similarity=0.537 Sum_probs=65.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC--cCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR--RLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
++||+++|+||||||||||+++|+|+. +|++|+|.++|+++... ..++.++|++|++.+++.+|+.||+.+...
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~---~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~ 108 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR---SFRKIIGYVPQDDILHPTLTVRETLMFAAK 108 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH---hhhheEEEccCcccCCCCCcHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999876431 234679999999999999999999987543
No 255
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.82 E-value=1.6e-20 Score=130.50 Aligned_cols=71 Identities=31% Similarity=0.534 Sum_probs=60.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETM 87 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l 87 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++. |+.||+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l 96 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI 96 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHC
Confidence 89999999999999999999999999999999999999876443222234679999999987774 999996
No 256
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4e-20 Score=136.81 Aligned_cols=105 Identities=21% Similarity=0.308 Sum_probs=75.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccC--CCCCHHHHHHHHHH-
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALY--GEFSIKETMMYFGW- 92 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~--~~~tv~e~l~~~~~- 92 (125)
++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+..++|++|++.++ ...++.+++.+...
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~ 107 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA---LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYG 107 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHh---hccceEEEeccccccccCCCcchhhheeccccc
Confidence 89999999999999999999999999999999999999775321 1234699999997542 23467787764311
Q ss_pred ---HhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 93 ---IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 93 ---~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
..........+++.++++.++|.+ .++.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 142 (272)
T PRK15056 108 HMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGE 142 (272)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCChhHhcCCccc
Confidence 111122334556788899999964 3454444
No 257
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.3e-20 Score=148.19 Aligned_cols=110 Identities=15% Similarity=0.305 Sum_probs=82.3
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC-CCcCCCeEEEEccCc---ccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG-SGVPGKRVGYMPQEI---ALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~-~~~~~~~ig~v~Q~~---~~~~~~tv~e~l~~~ 90 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.... ....++.++|++|++ .+++.+|+.|++.+.
T Consensus 276 i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~ 355 (501)
T PRK11288 276 VRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINIS 355 (501)
T ss_pred EeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccc
Confidence 4899999999999999999999999999999999999997764221 112245799999996 388899999998864
Q ss_pred HHHh----C--CChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 91 GWIF----G--METPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 91 ~~~~----~--~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
.... + ....+..+.+.++++.+++. + .++.+.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 397 (501)
T PRK11288 356 ARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNL 397 (501)
T ss_pred cchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccC
Confidence 3211 1 11223345678899999993 3 46666554
No 258
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.82 E-value=1e-20 Score=149.68 Aligned_cols=116 Identities=16% Similarity=0.065 Sum_probs=82.6
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
|+.++|++|+-.++ +++|++++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 36677777765332 299999999999999999999999999999999999988665322111123469999
Q ss_pred ccCccc--C-C-----CCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 72 PQEIAL--Y-G-----EFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~~--~-~-----~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+|++.. + + .+++.+++.+. .+..+++.++++.++|++ .++.+.+|
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~L 136 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYL 136 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccC
Confidence 998643 1 1 45777766431 123456788999999965 45555544
No 259
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.1e-20 Score=133.67 Aligned_cols=99 Identities=25% Similarity=0.299 Sum_probs=76.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCceeEEEcCccCCCCC--CCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR-----LNTGEIWVLGGKPGTKG--SGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~-----~~~G~i~~~g~~~~~~~--~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
.+||+++|+||||||||||+++|+|+.. |++|+|.++|.++.... ....++.++|+||++.+++. |+.||+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~ 105 (250)
T PRK14266 27 PKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVA 105 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHH
Confidence 8999999999999999999999999864 48999999998764311 11234679999999988875 9999998
Q ss_pred HHHHHhCCC-hHHHHHHHHHHHHhCCCC
Q psy340 89 YFGWIFGME-TPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 89 ~~~~~~~~~-~~~~~~~~~~~l~~~~L~ 115 (125)
+....++.. .....+++.++++.+++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 133 (250)
T PRK14266 106 YGLRIHGEDDEDFIEERVEESLKAAALW 133 (250)
T ss_pred hHHhhcCCCCHHHHHHHHHHHHHHcCCc
Confidence 754433322 234556778888888874
No 260
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.82 E-value=4.5e-20 Score=135.31 Aligned_cols=104 Identities=22% Similarity=0.290 Sum_probs=75.8
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|+.++-..+ +++||+++|+||||||||||+++|+|+.+|++|+|.+++ +..++|++
T Consensus 5 l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~v~ 73 (251)
T PRK09544 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGYVP 73 (251)
T ss_pred EEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEEec
Confidence 4566666654322 289999999999999999999999999999999999864 23699999
Q ss_pred cCcccCCCC--CHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 73 QEIALYGEF--SIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 73 Q~~~~~~~~--tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
|++.+++.+ ++.+++.+. .+. ..+++.++++.+++.+ .++.+.+
T Consensus 74 q~~~~~~~l~~~~~~~~~~~---~~~----~~~~~~~~l~~~gl~~~~~~~~~~ 120 (251)
T PRK09544 74 QKLYLDTTLPLTVNRFLRLR---PGT----KKEDILPALKRVQAGHLIDAPMQK 120 (251)
T ss_pred cccccccccChhHHHHHhcc---ccc----cHHHHHHHHHHcCChHHHhCChhh
Confidence 998776653 666665431 111 1345677899999865 3444443
No 261
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.82 E-value=9.9e-21 Score=152.29 Aligned_cols=95 Identities=18% Similarity=0.237 Sum_probs=74.2
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||.++|+||||||||||+++|+|+++|++|+|.++|.++........++.|+||+|++.+|+. |++||+.+... .
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-~ 443 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYART-E 443 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCC-C
Confidence 389999999999999999999999999999999999999887654333445789999999988874 99999987421 1
Q ss_pred CCChHHHHHHHHHHHHhCCCC
Q psy340 95 GMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~ 115 (125)
... .+++.++++.+++.
T Consensus 444 ~~~----~~~i~~al~~~~l~ 460 (582)
T PRK11176 444 QYS----REQIEEAARMAYAM 460 (582)
T ss_pred CCC----HHHHHHHHHHhCcH
Confidence 112 23455566666654
No 262
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=7.4e-21 Score=132.97 Aligned_cols=107 Identities=21% Similarity=0.325 Sum_probs=88.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC--------C-----CcCCCeEEEEccCcccCCCCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG--------S-----GVPGKRVGYMPQEIALYGEFS 82 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~--------~-----~~~~~~ig~v~Q~~~~~~~~t 82 (125)
.+|+++.|||.|||||||+||||.-+..|..|.|.++|+++.... . ...+.++|+|||+++++.+||
T Consensus 30 ~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmt 109 (256)
T COG4598 30 NAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMT 109 (256)
T ss_pred CCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHH
Confidence 789999999999999999999999999999999999997653211 0 012346899999999999999
Q ss_pred HHHHHHHH-HHHhCCChHHHHHHHHHHHHhCCCCc-cchhhh
Q psy340 83 IKETMMYF-GWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVK 122 (125)
Q Consensus 83 v~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~ 122 (125)
|.||+.-. ....+.++.+..++++.+|+++||.+ .+.++.
T Consensus 110 vLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~ 151 (256)
T COG4598 110 VLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA 151 (256)
T ss_pred HHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc
Confidence 99998764 35567788899999999999999976 344443
No 263
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.82 E-value=1.2e-20 Score=151.98 Aligned_cols=73 Identities=21% Similarity=0.298 Sum_probs=65.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
++|+++||+||||||||||+++|+|++ |++|+|.++|.++........++.|+||+|++.+|.. |++||+.+.
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g 446 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLG 446 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcC
Confidence 899999999999999999999999999 9999999999887665444556789999999988876 999999974
No 264
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.1e-19 Score=136.65 Aligned_cols=99 Identities=27% Similarity=0.304 Sum_probs=75.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCceeEEEcCccCCCCC--CCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR-----LNTGEIWVLGGKPGTKG--SGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~-----~~~G~i~~~g~~~~~~~--~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
.+||+++|+||||||||||+++|+|+.+ |++|+|.++|.++.... ....++.++|++|++.+++ .|+.||+.
T Consensus 69 ~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~ 147 (305)
T PRK14264 69 PEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENIS 147 (305)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHH
Confidence 8999999999999999999999999985 68999999998764311 1123457999999988777 49999998
Q ss_pred HHHHHh------------CCC-hHHHHHHHHHHHHhCCCC
Q psy340 89 YFGWIF------------GME-TPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 89 ~~~~~~------------~~~-~~~~~~~~~~~l~~~~L~ 115 (125)
+..... ... .....+.+.++++.+++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 187 (305)
T PRK14264 148 YGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALW 187 (305)
T ss_pred hHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCc
Confidence 754321 111 122345678888888874
No 265
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.5e-20 Score=135.46 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=63.1
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++|++++|+|||||||||||++|+|+.+|++|+|.++|.++........++.++|++|++.+++. |+.||+.+.
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~ 100 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLG 100 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhcc
Confidence 389999999999999999999999999999999999999765432222234679999999887775 999999764
No 266
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.81 E-value=2.4e-20 Score=148.64 Aligned_cols=95 Identities=23% Similarity=0.283 Sum_probs=75.5
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
++++|++++|+||||||||||+++|+|+++|++|+|.++|.++........++.++||+|++.+|+ .|++||+.+...
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~- 421 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA-GTIAENIRLARP- 421 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccCC-
Confidence 348999999999999999999999999999999999999988765444445678999999998886 499999987421
Q ss_pred hCCChHHHHHHHHHHHHhCCCC
Q psy340 94 FGMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~ 115 (125)
..+ .+.+.++++..++.
T Consensus 422 -~~~----~~~i~~a~~~~~l~ 438 (529)
T TIGR02857 422 -DAS----DAEIRRALERAGLD 438 (529)
T ss_pred -CCC----HHHHHHHHHHcCcH
Confidence 112 23455566666664
No 267
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.81 E-value=2.3e-20 Score=135.20 Aligned_cols=75 Identities=27% Similarity=0.324 Sum_probs=62.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++ .||.||+.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~ 99 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALA 99 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhcc
Confidence 38999999999999999999999999999999999999976543222223467999999987765 6999999764
No 268
>KOG0061|consensus
Probab=99.81 E-value=1.3e-19 Score=147.04 Aligned_cols=108 Identities=26% Similarity=0.380 Sum_probs=89.2
Q ss_pred ccccCCCcEEEEECCCCCCHHHHHHHHhCCCcC---CceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 12 KKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRL---NTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 12 ~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~---~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++..++||+.||+|||||||||||++|+|-... .+|+|.+||+.... ...++..|||.|++.+++.+||+|++.
T Consensus 50 sg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~---~~~~~~s~yV~QdD~l~~~LTV~EtL~ 126 (613)
T KOG0061|consen 50 SGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS---RSFRKISGYVQQDDVLLPTLTVRETLR 126 (613)
T ss_pred EEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch---hhhhheeEEEcccccccccccHHHHHH
Confidence 344499999999999999999999999998864 68999999954322 234578999999999999999999999
Q ss_pred HHHHHhC---CChHHHHHHHHHHHHhCCCCc-cchhhh
Q psy340 89 YFGWIFG---METPEIDDRLQFLLNFLDLPS-QSRLVK 122 (125)
Q Consensus 89 ~~~~~~~---~~~~~~~~~~~~~l~~~~L~~-~~~~~~ 122 (125)
+.+.++- .+..+.+++++++++.++|.+ .+..+.
T Consensus 127 f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig 164 (613)
T KOG0061|consen 127 FSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIG 164 (613)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceec
Confidence 9887652 255788899999999999976 455543
No 269
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.81 E-value=3.3e-19 Score=131.70 Aligned_cols=95 Identities=24% Similarity=0.316 Sum_probs=74.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||+++|+||||||||||+++|+|+++|++|+|.++|. +++++|.+.+.+.+|+.+|+.+.....+
T Consensus 48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~ 114 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMG 114 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999763 3566777777788999999987554444
Q ss_pred CChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 96 METPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
....+..+.+..+++.+++.+ .++.+.+
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (264)
T PRK13546 115 FKRKEIKAMTPKIIEFSELGEFIYQPVKK 143 (264)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCCccc
Confidence 444555566777888888864 3444433
No 270
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.81 E-value=7.3e-20 Score=129.98 Aligned_cols=62 Identities=27% Similarity=0.469 Sum_probs=57.2
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++|++++|+||||||||||+++|+|+.+|++|+|.++| .|+|++|++.++ ..|+.||+.+.
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~i~~~~q~~~l~-~~t~~enl~~~ 89 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------SIAYVSQEPWIQ-NGTIRENILFG 89 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------EEEEEecCchhc-cCcHHHHhccC
Confidence 389999999999999999999999999999999999976 599999999877 56999999874
No 271
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.81 E-value=2.1e-20 Score=135.49 Aligned_cols=74 Identities=28% Similarity=0.367 Sum_probs=62.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++ .|+.|++.+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~ 100 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYG 100 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhcc
Confidence 8999999999999999999999999999999999999976543222122357999999988776 6999999764
No 272
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=3.7e-20 Score=128.46 Aligned_cols=71 Identities=30% Similarity=0.436 Sum_probs=60.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETM 87 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l 87 (125)
++|++++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++ .|+.||+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l 96 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI 96 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh
Confidence 8999999999999999999999999999999999999987643222223457999999997776 5999996
No 273
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.81 E-value=1.4e-19 Score=144.16 Aligned_cols=110 Identities=18% Similarity=0.296 Sum_probs=81.3
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC-cCCCeEEEEccCc---ccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG-VPGKRVGYMPQEI---ALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ig~v~Q~~---~~~~~~tv~e~l~~~ 90 (125)
+++|+++||+||||||||||+++|+|+.+|++|+|.++|.++...... ..+..++|++|++ .+++.+|+.+++...
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~ 365 (510)
T PRK15439 286 VRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCAL 365 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhh
Confidence 389999999999999999999999999999999999999876432111 1235699999985 478889999998643
Q ss_pred HH--H-hCCChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 91 GW--I-FGMETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 91 ~~--~-~~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
.. . ........++.+.++++.++|+ . .++.+.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 404 (510)
T PRK15439 366 THNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTL 404 (510)
T ss_pred hhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccC
Confidence 11 1 1111223345688999999996 4 46666554
No 274
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.8e-19 Score=127.22 Aligned_cols=73 Identities=30% Similarity=0.456 Sum_probs=63.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCC--cCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRR--RLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
+++||+++|+||||||||||+++|+|+. +|++|+|.++|.++. ...++.++|++|++.+++.+|+.||+.+..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 104 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVEQQDVHSPNLTVREALRFSA 104 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhhhceEEecccCccccCCcHHHHHHHHH
Confidence 3899999999999999999999999985 489999999998764 123467999999998899999999998754
No 275
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=7.1e-20 Score=130.72 Aligned_cols=99 Identities=21% Similarity=0.260 Sum_probs=78.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc--ccCCCCCHHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI--ALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~ 93 (125)
++|+|+.|+|.||||||||+++|+|.+.|++|+|.++|.++...+...+...++-|||+| ..++.+|++||+.+....
T Consensus 30 ~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~R 109 (263)
T COG1101 30 AEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESR 109 (263)
T ss_pred cCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999988765555556789999998 678999999999986533
Q ss_pred ---hCCC---hHHHHHHHHHHHHhCCC
Q psy340 94 ---FGME---TPEIDDRLQFLLNFLDL 114 (125)
Q Consensus 94 ---~~~~---~~~~~~~~~~~l~~~~L 114 (125)
+++. ....++...+.++.+++
T Consensus 110 g~~rgl~~~ln~~~~~~f~~~l~~l~l 136 (263)
T COG1101 110 GKKRGLSSALNERRRSSFRERLARLGL 136 (263)
T ss_pred CcccccchhhhHHHHHHHHHHHhhccc
Confidence 2222 12333444555666554
No 276
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.81 E-value=2.1e-19 Score=130.91 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=81.1
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCC--cCCceeEEEcCccCCCCCCC-cCCCeE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRR--RLNTGEIWVLGGKPGTKGSG-VPGKRV 68 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~--~~~~G~i~~~g~~~~~~~~~-~~~~~i 68 (125)
|+.++|+.++-..+ +.+|++++|+||||||||||+++|+|+. +|++|+|.++|.++...... ..+..+
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 45666776654322 3899999999999999999999999995 69999999999876432211 123469
Q ss_pred EEEccCcccCCCCCHHHHHHHHHHH---h-C---CChHHHHHHHHHHHHhCCCC
Q psy340 69 GYMPQEIALYGEFSIKETMMYFGWI---F-G---METPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 69 g~v~Q~~~~~~~~tv~e~l~~~~~~---~-~---~~~~~~~~~~~~~l~~~~L~ 115 (125)
+|++|++.+++.+++.+++.+.... . . ....+..+.+.++++.++++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 134 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMP 134 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCC
Confidence 9999999888887776665432111 1 1 11223356677888888884
No 277
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.81 E-value=3.6e-20 Score=131.82 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=62.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
++|++++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++ .|+.||+.+
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~ 104 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDP 104 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcc
Confidence 8999999999999999999999999999999999999987543222223467999999998776 499999965
No 278
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.81 E-value=1.9e-20 Score=153.83 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=74.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||.++|+||||||||||+++|+|+++|++|+|.++|.++........++.|+||+|++.+|.. |++||+.+.. .
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~--~ 578 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD--P 578 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC--C
Confidence 489999999999999999999999999999999999999887654444456889999999988865 9999998631 1
Q ss_pred CCChHHHHHHHHHHHHhCCCC
Q psy340 95 GMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~ 115 (125)
..+ .+++.++++..++.
T Consensus 579 ~~~----~~~i~~al~~~~l~ 595 (710)
T TIGR03796 579 TIP----DADLVRACKDAAIH 595 (710)
T ss_pred CCC----HHHHHHHHHHhCCH
Confidence 122 23455566666654
No 279
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.9e-20 Score=133.84 Aligned_cols=74 Identities=24% Similarity=0.369 Sum_probs=62.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
++|++++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++ .|+.||+.+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~ 98 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYG 98 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhc
Confidence 8999999999999999999999999999999999999987643222223457999999988775 6999999764
No 280
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.80 E-value=3e-20 Score=149.71 Aligned_cols=94 Identities=23% Similarity=0.393 Sum_probs=77.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||+++|+||||||||||+++|+|+++|++|+|.++|.++........++.|+||+|++.+|+. |++||+.+... .
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~ 440 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP--N 440 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC--c
Confidence 89999999999999999999999999999999999999887654444456789999999988875 99999987421 1
Q ss_pred CChHHHHHHHHHHHHhCCCCc
Q psy340 96 METPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~ 116 (125)
...+.+.++++.+++.+
T Consensus 441 ----~~~~~i~~al~~~~l~~ 457 (574)
T PRK11160 441 ----ASDEALIEVLQQVGLEK 457 (574)
T ss_pred ----cCHHHHHHHHHHcCCHH
Confidence 12345677788888754
No 281
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.80 E-value=2.8e-20 Score=152.98 Aligned_cols=94 Identities=18% Similarity=0.182 Sum_probs=75.3
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||+++|+||||||||||+++|+|+++|++|+|.++|.++........++.|+||+|++.+|. .|++||+.+...
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~-- 580 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGLT-- 580 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCCC--
Confidence 38999999999999999999999999999999999999988765444445678999999998887 499999987421
Q ss_pred CCChHHHHHHHHHHHHhCCCC
Q psy340 95 GMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~ 115 (125)
..+ .+++.++++..++.
T Consensus 581 ~~~----~e~i~~al~~a~l~ 597 (711)
T TIGR00958 581 DTP----DEEIMAAAKAANAH 597 (711)
T ss_pred CCC----HHHHHHHHHHcCCH
Confidence 122 23455566666664
No 282
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.1e-19 Score=134.85 Aligned_cols=99 Identities=27% Similarity=0.364 Sum_probs=75.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCceeEEEcCccCCCCC--CCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR-----LNTGEIWVLGGKPGTKG--SGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~-----~~~G~i~~~g~~~~~~~--~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
++||++||+||||||||||+++|+|+.+ |++|+|.++|.++.... ....++.++||||++.++. .|++||+.
T Consensus 106 ~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~ 184 (329)
T PRK14257 106 KRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVA 184 (329)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHH
Confidence 8999999999999999999999999985 57999999998875311 1123567999999998775 79999999
Q ss_pred HHHHHhCCChHHH-HHHHHHHHHhCCCC
Q psy340 89 YFGWIFGMETPEI-DDRLQFLLNFLDLP 115 (125)
Q Consensus 89 ~~~~~~~~~~~~~-~~~~~~~l~~~~L~ 115 (125)
+.....+....+. .+.+..+++.++|.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 212 (329)
T PRK14257 185 YGPRNNGINDRKILEKIVEKSLKSAALW 212 (329)
T ss_pred hHHHhcCCChHHHHHHHHHHHHHHcCCc
Confidence 7654433332332 34466778877763
No 283
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.80 E-value=4e-20 Score=137.36 Aligned_cols=94 Identities=23% Similarity=0.357 Sum_probs=73.5
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
.+++||+++|+||||||||||+++|+|+.+ .+|+|.++|.++........++.++|+||++.+|+. |+.+|+....
T Consensus 26 ~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~-- 101 (275)
T cd03289 26 SISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG-- 101 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc--
Confidence 348999999999999999999999999997 799999999876543222345689999999998875 9999996321
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
... .+.+.++++.++|..
T Consensus 102 -~~~----~~~~~~~l~~~gL~~ 119 (275)
T cd03289 102 -KWS----DEEIWKVAEEVGLKS 119 (275)
T ss_pred -CCC----HHHHHHHHHHcCCHH
Confidence 111 234667788888864
No 284
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.80 E-value=2e-19 Score=128.86 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=62.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC----CCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG----SGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~----~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ....++.++|++|++.++ ..|+.||+.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~ 102 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFG 102 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhc
Confidence 3899999999999999999999999999999999999987654321 112245799999999877 57999999864
No 285
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.80 E-value=3.2e-19 Score=154.97 Aligned_cols=103 Identities=23% Similarity=0.374 Sum_probs=84.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCc---CCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRR---LNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~---~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
+++||++||+|||||||||||++|+|..+ |++|+|.++|.++.. ..++.+|||+|++.+++.+||+|++.+.+
T Consensus 786 i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~----~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a 861 (1394)
T TIGR00956 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS----SFQRSIGYVQQQDLHLPTSTVRESLRFSA 861 (1394)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh----hhhcceeeecccccCCCCCCHHHHHHHHH
Confidence 39999999999999999999999999987 688999999987632 23567999999988899999999999876
Q ss_pred HHhC---CChHHHHHHHHHHHHhCCCCc-cchhh
Q psy340 92 WIFG---METPEIDDRLQFLLNFLDLPS-QSRLV 121 (125)
Q Consensus 92 ~~~~---~~~~~~~~~~~~~l~~~~L~~-~~~~~ 121 (125)
.++. .+..+..++++++++.++|.+ .++.+
T Consensus 862 ~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v 895 (1394)
T TIGR00956 862 YLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVV 895 (1394)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCee
Confidence 6542 234455678899999999965 34444
No 286
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=4.9e-20 Score=129.95 Aligned_cols=110 Identities=24% Similarity=0.312 Sum_probs=87.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcC-ccCCCCCCCc-CCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG-GKPGTKGSGV-PGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g-~~~~~~~~~~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
..+||.-+|||||||||||++.+|+|..+|+.|+++|+| .++....... .+..||--||.|..|+.+||+||+.+...
T Consensus 28 v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~ 107 (249)
T COG4674 28 VDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALN 107 (249)
T ss_pred ecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhc
Confidence 489999999999999999999999999999999999999 6665543222 24568999999999999999999987542
Q ss_pred --------HhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 93 --------IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 93 --------~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
++.....+.+++++++|+..+|.+ .++....|
T Consensus 108 ~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~L 148 (249)
T COG4674 108 RDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALL 148 (249)
T ss_pred CCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhh
Confidence 222234555779999999999976 45555443
No 287
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.80 E-value=3.5e-20 Score=152.24 Aligned_cols=74 Identities=30% Similarity=0.394 Sum_probs=66.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
++|+.+||+||||||||||+++|+|+++|++|+|.++|.++........++.||||+|++.+|+. |++||+.+.
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~ 571 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLG 571 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhcc
Confidence 89999999999999999999999999999999999999887654444456789999999998876 999999974
No 288
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.80 E-value=2.7e-19 Score=143.61 Aligned_cols=110 Identities=21% Similarity=0.225 Sum_probs=81.2
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
++++|+++.-.++ +++|++++|+|||||||||||++|+|+.+|++|+|.+++ + ..|||++
T Consensus 323 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~~v~ 391 (552)
T TIGR03719 323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLAYVD 391 (552)
T ss_pred EEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEEEEe
Confidence 4566666654332 399999999999999999999999999999999999832 1 2699999
Q ss_pred cCc-ccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 73 QEI-ALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 73 Q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
|++ .+++.+||.|++.+....++.... ...+.++++.+++.. .++.+.+|
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~L 444 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQL 444 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhC
Confidence 996 478889999999875432222211 223557899999953 35655554
No 289
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.80 E-value=4.7e-20 Score=148.72 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=66.7
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++........++.|+||+|++.+++. |++||+.+.
T Consensus 357 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~ 432 (588)
T PRK13657 357 EAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVG 432 (588)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcC
Confidence 3489999999999999999999999999999999999999887654444456789999999988865 999999874
No 290
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.80 E-value=2.7e-19 Score=143.75 Aligned_cols=110 Identities=20% Similarity=0.217 Sum_probs=81.1
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|+++.-..+ +.+||+++|+||||||||||+++|+|+.+|++|+|.+++ + ..+||++
T Consensus 325 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~~v~ 393 (556)
T PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLAYVD 393 (556)
T ss_pred EEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEEEEe
Confidence 4566666653322 399999999999999999999999999999999999832 1 2599999
Q ss_pred cCc-ccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 73 QEI-ALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 73 Q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
|++ .+++.+||.|++.+.......... ...+..+++.+++.. .++.+.+|
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~L 446 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKGGDQQKKVGVL 446 (556)
T ss_pred CchhhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCChhHhcCchhhC
Confidence 996 678899999999875432222111 123456899999953 35655554
No 291
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.79 E-value=3.8e-20 Score=129.09 Aligned_cols=70 Identities=27% Similarity=0.396 Sum_probs=59.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETM 87 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l 87 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ....++.++|++|++.+++ .|+.||+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~-~tv~~~i 95 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISVLNQRPYLFD-TTLRNNL 95 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEEEccCCeeec-ccHHHhh
Confidence 99999999999999999999999999999999999999765322 1123467999999988775 6999986
No 292
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.79 E-value=8.9e-20 Score=149.51 Aligned_cols=75 Identities=28% Similarity=0.400 Sum_probs=67.7
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||++||+|+||||||||+|+|+|++.|++|+|.+||.|...-.....|++||||+|++.+|.. |++||+.+.
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~ 570 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALG 570 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcC
Confidence 489999999999999999999999999999999999999988765555567899999999987765 999999974
No 293
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.79 E-value=5.3e-20 Score=147.84 Aligned_cols=94 Identities=20% Similarity=0.273 Sum_probs=73.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||.++|+||||||||||+++|+|+++|++|+|.++|.++........++.++|+||++.+++. |++||+.+.. .
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~--~ 439 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGR--P 439 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCC--C
Confidence 389999999999999999999999999999999999999877554333345689999999987765 9999998642 1
Q ss_pred CCChHHHHHHHHHHHHhCCCC
Q psy340 95 GMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~ 115 (125)
..+ .+++.++++.+++.
T Consensus 440 ~~~----~~~~~~~l~~~~l~ 456 (576)
T TIGR02204 440 DAT----DEEVEAAARAAHAH 456 (576)
T ss_pred CCC----HHHHHHHHHHcCcH
Confidence 111 23455566666654
No 294
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.79 E-value=5.3e-20 Score=150.87 Aligned_cols=94 Identities=18% Similarity=0.320 Sum_probs=74.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||.++|+||||||||||+++|+|+++|++|+|.++|.++........++.++||+|++.+|.. |++||+.+...
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-- 564 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-- 564 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC--
Confidence 389999999999999999999999999999999999999887654444456789999999988875 99999987421
Q ss_pred CCChHHHHHHHHHHHHhCCCC
Q psy340 95 GMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~ 115 (125)
..+ .+++.++++..++.
T Consensus 565 ~~~----~~~i~~a~~~~~l~ 581 (694)
T TIGR03375 565 YAD----DEEILRAAELAGVT 581 (694)
T ss_pred CCC----HHHHHHHHHHcChH
Confidence 122 23455556666553
No 295
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.79 E-value=5.3e-20 Score=147.63 Aligned_cols=95 Identities=19% Similarity=0.248 Sum_probs=74.7
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||+++|+|+||||||||+++|+|+++|++|+|.++|.++........++.++|++|++.+|+. |++||+.+... .
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-~ 432 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT-E 432 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC-C
Confidence 489999999999999999999999999999999999999887554433456789999999988766 99999986421 0
Q ss_pred CCChHHHHHHHHHHHHhCCCC
Q psy340 95 GMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~ 115 (125)
..+ .+++.++++.+++.
T Consensus 433 ~~~----~~~i~~~l~~~~l~ 449 (571)
T TIGR02203 433 QAD----RAEIERALAAAYAQ 449 (571)
T ss_pred CCC----HHHHHHHHHHcChH
Confidence 122 33455566666664
No 296
>KOG0059|consensus
Probab=99.79 E-value=2.3e-19 Score=150.48 Aligned_cols=108 Identities=26% Similarity=0.463 Sum_probs=94.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC-cCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG-VPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
++|||+|++|||||||||++++|+|..+|++|++++.|.++...... ...+.+||.||++.+++.+|.+|.+.++++.+
T Consensus 589 ~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr 668 (885)
T KOG0059|consen 589 PPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR 668 (885)
T ss_pred cCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999887653322 24578999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
+.+..+..+.++.+++.++|.+ .++.++.
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ 698 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRT 698 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhh
Confidence 9998888999999999999954 4544443
No 297
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.5e-19 Score=143.17 Aligned_cols=94 Identities=27% Similarity=0.324 Sum_probs=77.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++|+.++|+|+||||||||+++|+|+.+|++|+|.++|.+.........+++++||+|+|.+++. |++||+.+...
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~--- 420 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP--- 420 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC---
Confidence 89999999999999999999999999999999999999887665555567899999999998886 99999997421
Q ss_pred CChHHHHHHHHHHHHhCCCCc
Q psy340 96 METPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~ 116 (125)
+..++.+.++++..++.+
T Consensus 421 ---~~s~e~i~~al~~a~l~~ 438 (559)
T COG4988 421 ---DASDEEIIAALDQAGLLE 438 (559)
T ss_pred ---cCCHHHHHHHHHHhcHHH
Confidence 112345666777777654
No 298
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.79 E-value=1.8e-19 Score=127.96 Aligned_cols=74 Identities=22% Similarity=0.183 Sum_probs=62.0
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCC--CcCCceeEEEcCccCCCCCCCc-CCCeEEEEccCcccCCCCCHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGR--RRLNTGEIWVLGGKPGTKGSGV-PGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~--~~~~~G~i~~~g~~~~~~~~~~-~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
+.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.++....... .+..++|++|++.+++..++.+++.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~ 99 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR 99 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh
Confidence 399999999999999999999999999 4799999999998765432211 2345999999998899999988873
No 299
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4.8e-19 Score=141.48 Aligned_cols=93 Identities=24% Similarity=0.368 Sum_probs=72.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcc--cCCCCCHHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA--LYGEFSIKETMMYFGWI 93 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~--~~~~~tv~e~l~~~~~~ 93 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.+++. ..+||++|++. +++.+|+.+++.+..
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~t~~~~~~~~~-- 409 (530)
T PRK15064 343 EAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGYYAQDHAYDFENDLTLFDWMSQWR-- 409 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEEEcccccccCCCCCcHHHHHHHhc--
Confidence 899999999999999999999999999999999998652 46999999863 556789999886421
Q ss_pred hCCChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
. . ....+++.++++.+++. . .++.+.+|
T Consensus 410 -~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~~L 439 (530)
T PRK15064 410 -Q-E-GDDEQAVRGTLGRLLFSQDDIKKSVKVL 439 (530)
T ss_pred -c-C-CccHHHHHHHHHHcCCChhHhcCccccc
Confidence 1 1 11245678899999984 3 45555544
No 300
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4.4e-19 Score=140.51 Aligned_cols=123 Identities=15% Similarity=0.260 Sum_probs=85.4
Q ss_pred ccccchhhhhcc-------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEEEEcc
Q psy340 2 KTNTNTKKKKKK-------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYMPQ 73 (125)
Q Consensus 2 ~~~~~~~~~~~~-------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig~v~Q 73 (125)
+.++|++++.+. .+++||++||+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.++|++|
T Consensus 251 i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q 330 (491)
T PRK10982 251 LEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTE 330 (491)
T ss_pred EEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCC
Confidence 455666665211 239999999999999999999999999999999999999977643211 112356999999
Q ss_pred Cc---ccCCCCCHHHHHHHH-----HHHhCC-ChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 74 EI---ALYGEFSIKETMMYF-----GWIFGM-ETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 74 ~~---~~~~~~tv~e~l~~~-----~~~~~~-~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
++ .+++.+++.++..+. ...++. ......+.+.++++.+++. + .++.+.+|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 392 (491)
T PRK10982 331 ERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSL 392 (491)
T ss_pred chhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccC
Confidence 85 468888888774321 111121 2234456778899999984 3 45655544
No 301
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=8.1e-19 Score=123.14 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=83.5
Q ss_pred ccccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc--ccCCCCCHHHHHHH
Q psy340 12 KKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI--ALYGEFSIKETMMY 89 (125)
Q Consensus 12 ~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~ 89 (125)
+=.+++|+.+||||.||||||||.++|+|.++|++|+|.|+|+...-..-..+.++|-++||+| .+.|.+.+...+..
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~ 112 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDF 112 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcc
Confidence 3345999999999999999999999999999999999999998764332234557899999998 56677777777777
Q ss_pred HHHHh-CCChHHHHHHHHHHHHhCCC
Q psy340 90 FGWIF-GMETPEIDDRLQFLLNFLDL 114 (125)
Q Consensus 90 ~~~~~-~~~~~~~~~~~~~~l~~~~L 114 (125)
+.++. .+...+..+++.+.|..+||
T Consensus 113 PL~l~T~~~~~~R~~~i~~TL~~VGL 138 (267)
T COG4167 113 PLRLNTDLEPEQRRKQIFETLRMVGL 138 (267)
T ss_pred hhhhcccCChHHHHHHHHHHHHHhcc
Confidence 76654 34556667889999999998
No 302
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=1.7e-19 Score=124.49 Aligned_cols=107 Identities=22% Similarity=0.295 Sum_probs=88.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccC--CCCCC----CcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP--GTKGS----GVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~--~~~~~----~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
-++||.+.++||||||||||+|.+.-+.-|.+|+..+.|... +.... ...++.+|+|||+..++|++||.||+.
T Consensus 25 ~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enli 104 (242)
T COG4161 25 CPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLI 104 (242)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHH
Confidence 389999999999999999999999999999999999887532 22111 123578999999999999999999987
Q ss_pred H-HHHHhCCChHHHHHHHHHHHHhCCCCc-cchhh
Q psy340 89 Y-FGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLV 121 (125)
Q Consensus 89 ~-~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~ 121 (125)
- +.+..++++++...++.++++.+.|.+ .++++
T Consensus 105 eap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p 139 (242)
T COG4161 105 EAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP 139 (242)
T ss_pred hhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc
Confidence 6 456778888898999999999999976 45554
No 303
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.78 E-value=1.5e-19 Score=145.43 Aligned_cols=75 Identities=21% Similarity=0.250 Sum_probs=65.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++|++++|+||||||||||+++|+|+++|++|+|.++|.++........++.++|++|++.+++. |++||+.+.
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~ 412 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALG 412 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcC
Confidence 389999999999999999999999999999999999999877554333445789999999988875 999999864
No 304
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.78 E-value=3.7e-19 Score=140.89 Aligned_cols=123 Identities=19% Similarity=0.287 Sum_probs=81.9
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcC-CceeEEEcCccCCCCCC-CcCCCeEEE
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRL-NTGEIWVLGGKPGTKGS-GVPGKRVGY 70 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-~~G~i~~~g~~~~~~~~-~~~~~~ig~ 70 (125)
+.++|++|.-.++ +++||+++|+||||||||||+++|+|+.++ ++|+|.++|.++..... ...++.++|
T Consensus 261 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 340 (490)
T PRK10938 261 IVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGY 340 (490)
T ss_pred EEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceE
Confidence 4556666553322 289999999999999999999999998775 69999999976432111 112457999
Q ss_pred EccCcccCCC--CCHHHHHHHHHH----HhCCChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 71 MPQEIALYGE--FSIKETMMYFGW----IFGMETPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 71 v~Q~~~~~~~--~tv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
++|++.++.. .++.+++.+... .+.....+..+++.++++.++|+. .++.+.+|
T Consensus 341 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 402 (490)
T PRK10938 341 VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSL 402 (490)
T ss_pred ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhC
Confidence 9998765433 456655543211 111112333567889999999964 35555554
No 305
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.2e-18 Score=125.20 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=86.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCC--cCCceeEEEcCccCCCCCCCcC-CCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRR--RLNTGEIWVLGGKPGTKGSGVP-GKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~--~~~~G~i~~~g~~~~~~~~~~~-~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
+++||+++|+||||||||||..+|+|.- .+++|+|.|+|+++.......+ +.-|...||.|.-+|..++.+.+....
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~ 106 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAM 106 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHH
Confidence 3899999999999999999999999985 6789999999999987655444 346888999999999999999998765
Q ss_pred HHhCCC---hHHHHHHHHHHHHhCCCCc--cchhhh
Q psy340 92 WIFGME---TPEIDDRLQFLLNFLDLPS--QSRLVK 122 (125)
Q Consensus 92 ~~~~~~---~~~~~~~~~~~l~~~~L~~--~~~~~~ 122 (125)
...... ..+..+.+.++++.++++. .+|.++
T Consensus 107 n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN 142 (251)
T COG0396 107 NARRGARGILPEFIKELKEKAELLGLDEEFLERYVN 142 (251)
T ss_pred HhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC
Confidence 432111 3466788999999999975 355443
No 306
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.78 E-value=2.7e-19 Score=143.79 Aligned_cols=75 Identities=25% Similarity=0.344 Sum_probs=68.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||.+||+||||||||||++.|++++.|++|+|.+||.++........++.|+||+|++.+|. -|++||+.+.
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g 426 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALG 426 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcC
Confidence 58999999999999999999999999999999999999999877655566789999999999998 6999999985
No 307
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.78 E-value=9.3e-19 Score=121.10 Aligned_cols=62 Identities=26% Similarity=0.447 Sum_probs=56.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
.+||+++|+||||||||||+++|+|+.+|++|+|.+++. +.++|++|++.++ ..|+.||+.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~q~~~~~-~~tv~~nl~~ 86 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFLPQRPYLP-LGTLREQLIY 86 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEECCCCccc-cccHHHHhhc
Confidence 899999999999999999999999999999999998652 5799999998754 6799999975
No 308
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.77 E-value=1.3e-18 Score=151.28 Aligned_cols=100 Identities=19% Similarity=0.152 Sum_probs=79.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC----cCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR----RLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~----~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
++||+++|+|||||||||||++|+|.. .|.+|+|.++|.++.... ...++.++||+|++.+++.+||.|++.+..
T Consensus 85 ~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~ 163 (1394)
T TIGR00956 85 KPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPHLTVGETLDFAA 163 (1394)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCCCCHHHHHHHHH
Confidence 899999999999999999999999986 578999999998754321 123457999999999999999999999876
Q ss_pred HHhC-------CChHHHHHH-HHHHHHhCCCCc
Q psy340 92 WIFG-------METPEIDDR-LQFLLNFLDLPS 116 (125)
Q Consensus 92 ~~~~-------~~~~~~~~~-~~~~l~~~~L~~ 116 (125)
..+. ....+..++ ++.+++.++|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 196 (1394)
T TIGR00956 164 RCKTPQNRPDGVSREEYAKHIADVYMATYGLSH 196 (1394)
T ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc
Confidence 5431 223333333 456899999975
No 309
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.77 E-value=1.6e-18 Score=137.84 Aligned_cols=97 Identities=23% Similarity=0.375 Sum_probs=73.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++|+++||+|||||||||||++|+|+.+|++|+|.++|.+. .++ +.+.+++.+|+.|++.+.....
T Consensus 47 I~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~----------~i~---~~~~l~~~lTV~EnL~l~~~~~ 113 (549)
T PRK13545 47 VPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA----------LIA---ISSGLNGQLTGIENIELKGLMM 113 (549)
T ss_pred EeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------eEE---eccccCCCCcHHHHHHhhhhhc
Confidence 389999999999999999999999999999999999987531 122 2344567789999998755444
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+....+..+++.++++.++|.+ .++.+.+|
T Consensus 114 ~~~~~e~~e~i~elLe~lgL~~~ld~~~~~L 144 (549)
T PRK13545 114 GLTKEKIKEIIPEIIEFADIGKFIYQPVKTY 144 (549)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhhCCcccC
Confidence 4445555667788999999965 34544443
No 310
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.77 E-value=2.8e-19 Score=131.26 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=62.2
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
+++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++........++.++|++|++.+++ .|+.+|+..
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~ 117 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDP 117 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCc
Confidence 38999999999999999999999999999999999999987644322233567999999998776 499998753
No 311
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.77 E-value=3e-18 Score=135.96 Aligned_cols=103 Identities=24% Similarity=0.308 Sum_probs=86.2
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCC----ceeEEEcCccCCCCCC----CcCCCeEEEEccCc--ccCCCCCHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLN----TGEIWVLGGKPGTKGS----GVPGKRVGYMPQEI--ALYGEFSIK 84 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~----~G~i~~~g~~~~~~~~----~~~~~~ig~v~Q~~--~~~~~~tv~ 84 (125)
+.+||++||||+|||||||+.++|.|++++. +|+|.|+|.++..... ..+++.|+||||++ .+.|-+|+.
T Consensus 32 v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg 111 (539)
T COG1123 32 VEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIG 111 (539)
T ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHH
Confidence 4899999999999999999999999999877 7999999987654322 23567899999997 566779999
Q ss_pred HHHHHHHHHhC-CChHHHHHHHHHHHHhCCCCcc
Q psy340 85 ETMMYFGWIFG-METPEIDDRLQFLLNFLDLPSQ 117 (125)
Q Consensus 85 e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~ 117 (125)
+.+.-....+. ...++.++++.++|+.++|++.
T Consensus 112 ~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~ 145 (539)
T COG1123 112 DQIREALRLHGKGSRAEARKRAVELLEQVGLPDP 145 (539)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHcCCCCh
Confidence 99887666665 4578888999999999999874
No 312
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.77 E-value=1.9e-18 Score=123.91 Aligned_cols=73 Identities=19% Similarity=0.306 Sum_probs=58.1
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEE-EcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIW-VLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~-~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
.+++|++++|+||||||||||+++|+|+.+|++|+|. +++... .+.+.+.+++.+|+.||+.+...
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~enl~~~~~ 75 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEENARMMAS 75 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHHHHHHHHH
Confidence 4688999999999999999999999999999999997 655321 12245668889999999998766
Q ss_pred HhCCChH
Q psy340 93 IFGMETP 99 (125)
Q Consensus 93 ~~~~~~~ 99 (125)
.++....
T Consensus 76 ~~~~~~~ 82 (213)
T PRK15177 76 LYGLDGD 82 (213)
T ss_pred HcCCCHH
Confidence 5554433
No 313
>KOG0058|consensus
Probab=99.77 E-value=3e-19 Score=144.18 Aligned_cols=77 Identities=25% Similarity=0.305 Sum_probs=70.7
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
++|||++|||||||+||||+.+.|..++.|++|+|.+||.++.+.+....+++||+|.|+|.+|.. ||.||+.|...
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~ 567 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD 567 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC
Confidence 489999999999999999999999999999999999999999877666677899999999998886 99999998643
No 314
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.77 E-value=1.8e-19 Score=147.77 Aligned_cols=75 Identities=24% Similarity=0.340 Sum_probs=65.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||.++|+|+||||||||+++|+|+++|++|+|.++|.++........++.++||+|++.+++. |++||+.+.
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~ 554 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALC 554 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcC
Confidence 389999999999999999999999999999999999999887654434456789999999988774 999999863
No 315
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.77 E-value=1.5e-18 Score=127.64 Aligned_cols=103 Identities=21% Similarity=0.294 Sum_probs=74.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEE-----------EcCccCCCCCCCcC--CCeEEEEccCcccCCCC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIW-----------VLGGKPGTKGSGVP--GKRVGYMPQEIALYGEF 81 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~-----------~~g~~~~~~~~~~~--~~~ig~v~Q~~~~~~~~ 81 (125)
+.+||+++|+|||||||||||++|+|+.+|++|+|. ++|.++.......+ ...++|++|+..+++.
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 101 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK- 101 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-
Confidence 489999999999999999999999999999999996 66766533211111 1247899998877774
Q ss_pred CHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 82 SIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 82 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
++.+++.... ......+.+.++++.++|++ .++.+.+
T Consensus 102 ~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 139 (255)
T cd03236 102 AVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQ 139 (255)
T ss_pred HHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhh
Confidence 7788776532 12233466788999999965 3444443
No 316
>PLN03140 ABC transporter G family member; Provisional
Probab=99.77 E-value=1.9e-18 Score=150.55 Aligned_cols=76 Identities=30% Similarity=0.361 Sum_probs=67.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCC---ceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN---TGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+|++.+.+.
T Consensus 189 ~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~ 265 (1470)
T PLN03140 189 KPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVMTVKETLDFSAR 265 (1470)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcCcHHHHHHHHHH
Confidence 999999999999999999999999999998 999999998764321 24679999999999999999999999765
Q ss_pred Hh
Q psy340 93 IF 94 (125)
Q Consensus 93 ~~ 94 (125)
.+
T Consensus 266 ~~ 267 (1470)
T PLN03140 266 CQ 267 (1470)
T ss_pred hc
Confidence 44
No 317
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.77 E-value=1.5e-18 Score=141.34 Aligned_cols=110 Identities=25% Similarity=0.282 Sum_probs=80.9
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|+++.-.++ +.+|++++|+|||||||||||++|+|+.+|++|+|.+ |.+ -.|||++
T Consensus 320 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~----------~~i~y~~ 388 (635)
T PRK11147 320 FEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK----------LEVAYFD 388 (635)
T ss_pred EEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC----------cEEEEEe
Confidence 4556666653322 3999999999999999999999999999999999988 432 2699999
Q ss_pred cCc-ccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 73 QEI-ALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 73 Q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
|++ .+++.+||.|++.+........ .....+.++++.+++.. .++.+.+|
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~L 441 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKAL 441 (635)
T ss_pred CcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhC
Confidence 986 5889999999998643211111 12345778899999852 45555554
No 318
>KOG0057|consensus
Probab=99.77 E-value=5e-19 Score=139.46 Aligned_cols=95 Identities=20% Similarity=0.285 Sum_probs=78.2
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
.+++||.+||+|+|||||||+||+|.++.. ++|+|.+||++++.-.....|+.||||||+..+|.+ ||..|+.+.
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YG--- 448 (591)
T KOG0057|consen 374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYG--- 448 (591)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcC---
Confidence 459999999999999999999999999998 899999999998876555567889999999988876 999999864
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
.++. ..+++.++.++.++.+
T Consensus 449 --n~sa-s~eeV~e~~k~a~~hd 468 (591)
T KOG0057|consen 449 --NPSA-SDEEVVEACKRAGLHD 468 (591)
T ss_pred --CCCc-CHHHHHHHHHHcCcHH
Confidence 2221 1345666777777754
No 319
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.76 E-value=1.2e-18 Score=139.60 Aligned_cols=73 Identities=27% Similarity=0.505 Sum_probs=64.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
++|+.++|+||||||||||+++|+|+++|++|+|.++|.++........++.++||+|++.+++. |++||+.+
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~ 414 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIAR 414 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhc
Confidence 89999999999999999999999999999999999999877554333446789999999988876 99999985
No 320
>PLN03140 ABC transporter G family member; Provisional
Probab=99.76 E-value=3.5e-18 Score=148.85 Aligned_cols=103 Identities=20% Similarity=0.330 Sum_probs=82.1
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCc--CCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRR--LNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
+++|++++|+|||||||||||++|+|... +.+|+|.++|.+... ...++.+|||+|++.+++.+||+|++.+.+.
T Consensus 903 i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~ 979 (1470)
T PLN03140 903 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAF 979 (1470)
T ss_pred EECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCCh---HHhhhheEEEccccccCCCCcHHHHHHHHHH
Confidence 38999999999999999999999999876 368999999976432 1234579999999999999999999998765
Q ss_pred HhC---CChHHHHHHHHHHHHhCCCCc-cchh
Q psy340 93 IFG---METPEIDDRLQFLLNFLDLPS-QSRL 120 (125)
Q Consensus 93 ~~~---~~~~~~~~~~~~~l~~~~L~~-~~~~ 120 (125)
.+. .+..+..+.++++++.++|.+ .++.
T Consensus 980 lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~ 1011 (1470)
T PLN03140 980 LRLPKEVSKEEKMMFVDEVMELVELDNLKDAI 1011 (1470)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHCCChhHhCCc
Confidence 431 233455667899999999975 3444
No 321
>PRK13409 putative ATPase RIL; Provisional
Probab=99.76 E-value=4.7e-18 Score=137.49 Aligned_cols=92 Identities=21% Similarity=0.245 Sum_probs=74.1
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++ ..++|++|++.+++.+||.|++.+....+
T Consensus 362 i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~ 428 (590)
T PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPDYDGTVEDLLRSITDDL 428 (590)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEEecccccCCCCCcHHHHHHHHhhhc
Confidence 48999999999999999999999999999999999884 15899999988888999999998743222
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.. ...+.++++.++|.+ .++.+.+|
T Consensus 429 --~~---~~~~~~~L~~l~l~~~~~~~~~~L 454 (590)
T PRK13409 429 --GS---SYYKSEIIKPLQLERLLDKNVKDL 454 (590)
T ss_pred --Ch---HHHHHHHHHHCCCHHHHhCCcccC
Confidence 11 224678899999965 45655554
No 322
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.75 E-value=9.7e-19 Score=141.27 Aligned_cols=74 Identities=24% Similarity=0.300 Sum_probs=64.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.++|.++........++.++||+|++.+++ .|++||+.+.
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~ 432 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLG 432 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcC
Confidence 8999999999999999999999999999999999999987655433334578999999998876 5999999874
No 323
>PLN03232 ABC transporter C family member; Provisional
Probab=99.75 E-value=7.4e-19 Score=153.60 Aligned_cols=92 Identities=20% Similarity=0.303 Sum_probs=75.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||.+||+||||||||||+++|.|+++|++|+|.+||.++........+++|+||||++.+|+. |++||+.... .
T Consensus 1260 ~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~---~ 1335 (1495)
T PLN03232 1260 SPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS---E 1335 (1495)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC---C
Confidence 89999999999999999999999999999999999999998765444557889999999999886 9999998531 2
Q ss_pred CChHHHHHHHHHHHHhCCCC
Q psy340 96 METPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~ 115 (125)
.+ .+.+.++++..++.
T Consensus 1336 ~s----deei~~al~~a~l~ 1351 (1495)
T PLN03232 1336 HN----DADLWEALERAHIK 1351 (1495)
T ss_pred CC----HHHHHHHHHHcCCH
Confidence 22 23455666666664
No 324
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.75 E-value=1.6e-18 Score=138.92 Aligned_cols=90 Identities=21% Similarity=0.276 Sum_probs=70.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++|++++|+||||||||||+++|+|+++|++|+|.++|.++........++.++||+|++.+++. |+.+| +
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n--------~ 417 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE--------G 417 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc--------c
Confidence 89999999999999999999999999999999999999887654333446789999999887765 66665 0
Q ss_pred CChHHHHHHHHHHHHhCCCCc
Q psy340 96 METPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~ 116 (125)
.....+.+.++++.+++..
T Consensus 418 --~~~~~~~~~~~~~~~~l~~ 436 (547)
T PRK10522 418 --KPANPALVEKWLERLKMAH 436 (547)
T ss_pred --CchHHHHHHHHHHHcCCch
Confidence 1122345666777777653
No 325
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.74 E-value=1.4e-18 Score=136.07 Aligned_cols=75 Identities=27% Similarity=0.512 Sum_probs=69.1
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
++.+||.+|||||||||||||.|+|.|..+|.+|.|.+||-++.++......++|||+||+-.+|+. ||.||+.=
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaR 432 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIAR 432 (580)
T ss_pred EecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHh
Confidence 4589999999999999999999999999999999999999988777666778999999999999987 99999974
No 326
>PLN03130 ABC transporter C family member; Provisional
Probab=99.74 E-value=1.3e-18 Score=152.69 Aligned_cols=93 Identities=24% Similarity=0.333 Sum_probs=76.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||.+||+|+||||||||+++|.|++.|++|+|.+||.++........|++|+||||++.+|.. |++||+....
T Consensus 1262 I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~--- 1337 (1622)
T PLN03130 1262 ISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN--- 1337 (1622)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC---
Confidence 389999999999999999999999999999999999999998765555567889999999999876 9999997532
Q ss_pred CCChHHHHHHHHHHHHhCCCC
Q psy340 95 GMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~ 115 (125)
..+ .+.+.++++..++.
T Consensus 1338 ~~t----deei~~Al~~a~l~ 1354 (1622)
T PLN03130 1338 EHN----DADLWESLERAHLK 1354 (1622)
T ss_pred CCC----HHHHHHHHHHcCcH
Confidence 122 23455666666664
No 327
>PTZ00243 ABC transporter; Provisional
Probab=99.74 E-value=2.2e-18 Score=150.97 Aligned_cols=93 Identities=24% Similarity=0.411 Sum_probs=77.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||.+||+|++|||||||+++|.|++.|++|+|.+||.++........++.|+||||++.+|.. |+++|+... ..
T Consensus 1334 ~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~---~~ 1409 (1560)
T PTZ00243 1334 APREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF---LE 1409 (1560)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCcc---cC
Confidence 89999999999999999999999999999999999999998765544567899999999998876 999999642 12
Q ss_pred CChHHHHHHHHHHHHhCCCCc
Q psy340 96 METPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~ 116 (125)
.+ .+.+.++++.+++.+
T Consensus 1410 ~s----deeI~~Al~~a~l~~ 1426 (1560)
T PTZ00243 1410 AS----SAEVWAALELVGLRE 1426 (1560)
T ss_pred CC----HHHHHHHHHHCCChH
Confidence 22 245667777777753
No 328
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=1.9e-18 Score=127.04 Aligned_cols=101 Identities=27% Similarity=0.448 Sum_probs=83.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc-cCcccCCCCCHHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP-QEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~-Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
+++|++++++|||||||||+||+++|++.|++|.|.++|.++...... .-+++++|+ |...++..+.+.|-+......
T Consensus 47 IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~-~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~I 125 (325)
T COG4586 47 IPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREE-YLRSIGLVMGQKLQLWWDLPALDSLEVLKLI 125 (325)
T ss_pred cCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHH-HHHHHHHHhhhhheeeeechhhhhHHHHHHH
Confidence 499999999999999999999999999999999999999887653221 225677775 555666666788887777778
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
|..+.++.+++...+.+.++|+.
T Consensus 126 y~Ipd~~F~~r~~~l~eiLdl~~ 148 (325)
T COG4586 126 YEIPDDEFAERLDFLTEILDLEG 148 (325)
T ss_pred HhCCHHHHHHHHHHHHHHhcchh
Confidence 88888888999999999999974
No 329
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.74 E-value=1.4e-18 Score=151.43 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=75.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcC---------------------------------------------------
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL--------------------------------------------------- 44 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~--------------------------------------------------- 44 (125)
++|+++|||||||||||||+++|.|++.|
T Consensus 1192 ~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1271 (1466)
T PTZ00265 1192 DSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDST 1271 (1466)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999998
Q ss_pred ---CceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC
Q psy340 45 ---NTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 45 ---~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 115 (125)
++|+|.++|.++........++.|+||+|++.+|. .|++||+.+... ..+ .+.+.++++..++.
T Consensus 1272 ~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~--~at----~eeI~~A~k~A~l~ 1338 (1466)
T PTZ00265 1272 VFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE--DAT----REDVKRACKFAAID 1338 (1466)
T ss_pred cCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCCH
Confidence 69999999998876554556788999999999885 599999998521 122 23455566666654
No 330
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.73 E-value=8.8e-19 Score=126.87 Aligned_cols=122 Identities=25% Similarity=0.345 Sum_probs=91.9
Q ss_pred cccchhhhhcccc---------CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEEEEc
Q psy340 3 TNTNTKKKKKKKK---------KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYMP 72 (125)
Q Consensus 3 ~~~~~~~~~~~~~---------~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig~v~ 72 (125)
..+|.+-++++|. ++||-++|+|||||||||||++++|..+|.+|.+.+.|........ ...+++||+|.
T Consensus 33 ~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS 112 (257)
T COG1119 33 ELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVS 112 (257)
T ss_pred EecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccC
Confidence 3456666666665 9999999999999999999999999999999999999977654322 34578999998
Q ss_pred cCc--ccCCCCCHHHHHHHHH----HHhC-CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEI--ALYGEFSIKETMMYFG----WIFG-METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~--~~~~~~tv~e~l~~~~----~~~~-~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
... .+.+..+|+|.+.-.. .++. ...++..+++..+++.+++.+ .++.+.+|
T Consensus 113 ~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~L 172 (257)
T COG1119 113 SELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSL 172 (257)
T ss_pred HHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhc
Confidence 653 4456677888776422 1232 335667788999999999976 56776665
No 331
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.73 E-value=8.1e-18 Score=125.40 Aligned_cols=62 Identities=29% Similarity=0.440 Sum_probs=56.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.+++. |+.||+.+.
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i~yv~q~~~l~~~-tv~enl~~~ 121 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFSSQFSWIMPG-TIKENIIFG 121 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EEEEEeCccccccc-CHHHHhhcc
Confidence 399999999999999999999999999999999999865 38999999887775 999999863
No 332
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.73 E-value=3.8e-18 Score=137.07 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=73.1
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++|++++|+||||||||||+++|+|+++|++|+|.++|.++........++.++||+|++.+|.. |+.+|..
T Consensus 365 i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~------ 437 (555)
T TIGR01194 365 IAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG------ 437 (555)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc------
Confidence 489999999999999999999999999999999999999887654333345689999999887765 6777731
Q ss_pred CCChHHHHHHHHHHHHhCCCCc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
.....+++.++++.+++.+
T Consensus 438 ---~~~~~~~~~~~~~~~~l~~ 456 (555)
T TIGR01194 438 ---EHASLDNAQQYLQRLEIAD 456 (555)
T ss_pred ---cchhHHHHHHHHHHcCCch
Confidence 1223455777888888864
No 333
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.8e-17 Score=134.03 Aligned_cols=112 Identities=22% Similarity=0.297 Sum_probs=77.2
Q ss_pred Cccccchhhhhcccc---------CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 1 MKTNTNTKKKKKKKK---------KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~---------~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
|++++|++|.-.++. ++|+++||+|||||||||||++|+|+.+|++|+|.++|. ..++|+
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-----------~~i~~~ 69 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-----------WQLAWV 69 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEE
Confidence 577888887775543 999999999999999999999999999999999999753 247888
Q ss_pred ccCcccCCCCCHHHHHHHHH-----------------------HHh----CCChHHHHHHHHHHHHhCCCC-c-cchhhh
Q psy340 72 PQEIALYGEFSIKETMMYFG-----------------------WIF----GMETPEIDDRLQFLLNFLDLP-S-QSRLVK 122 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~-----------------------~~~----~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~ 122 (125)
+|++..+ ..++.+++.... ... .....+...++.++++.+|+. . .++.+.
T Consensus 70 ~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 148 (638)
T PRK10636 70 NQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS 148 (638)
T ss_pred ecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh
Confidence 8754322 245555443110 000 001123346788899999995 2 466665
Q ss_pred hc
Q psy340 123 NL 124 (125)
Q Consensus 123 ~L 124 (125)
+|
T Consensus 149 ~L 150 (638)
T PRK10636 149 DF 150 (638)
T ss_pred hc
Confidence 54
No 334
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.73 E-value=4.7e-18 Score=117.26 Aligned_cols=59 Identities=25% Similarity=0.391 Sum_probs=50.1
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEEEEcc
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYMPQ 73 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig~v~Q 73 (125)
+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...++.++|++|
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe
Confidence 39999999999999999999999999999999999999987654321 123457999998
No 335
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.72 E-value=3.3e-18 Score=149.72 Aligned_cols=93 Identities=20% Similarity=0.315 Sum_probs=76.3
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||.+||+|+||||||||+++|.|++.|++|+|.+||.++........|++|+||||++.+|.. |+++|+....
T Consensus 1309 I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~--- 1384 (1522)
T TIGR00957 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS--- 1384 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc---
Confidence 389999999999999999999999999999999999999998775555567889999999999986 9999997321
Q ss_pred CCChHHHHHHHHHHHHhCCCC
Q psy340 95 GMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~ 115 (125)
..+. +.+.++++..++.
T Consensus 1385 ~~sd----eei~~al~~a~l~ 1401 (1522)
T TIGR00957 1385 QYSD----EEVWWALELAHLK 1401 (1522)
T ss_pred CCCH----HHHHHHHHHcCcH
Confidence 2222 3455666666664
No 336
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.72 E-value=1.8e-18 Score=120.87 Aligned_cols=59 Identities=29% Similarity=0.525 Sum_probs=49.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEcc
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q 73 (125)
+.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++........+..++|++|
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 80 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence 48999999999999999999999999999999999999987643222222346899998
No 337
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.72 E-value=2.9e-17 Score=126.32 Aligned_cols=110 Identities=20% Similarity=0.225 Sum_probs=91.6
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC---cCCCeEEEEccCc--ccCCCCCHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKRVGYMPQEI--ALYGEFSIKETMM 88 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~---~~~~~ig~v~Q~~--~~~~~~tv~e~l~ 88 (125)
.+.+||.+||||+||||||||=.+|.++++++ |+|.|+|+++...... ..++++.+||||| .+.|.|||.+.+.
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~ 387 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIE 387 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhh
Confidence 35899999999999999999999999999876 9999999988653322 2357899999998 6889999999999
Q ss_pred HHHHHhC--CChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 89 YFGWIFG--METPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 89 ~~~~~~~--~~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
-....+. .+..+..+++.++|+.+||+. .+|++.++
T Consensus 388 EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEF 427 (534)
T COG4172 388 EGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEF 427 (534)
T ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCccc
Confidence 8777664 467788899999999999964 46766543
No 338
>KOG0055|consensus
Probab=99.72 E-value=4.7e-18 Score=143.67 Aligned_cols=75 Identities=24% Similarity=0.352 Sum_probs=68.0
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++|++++|||||||||||++.+|.+++.|++|+|.+||.++........+.+||.|+|+|.+|. .|+.||+.+.
T Consensus 376 i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G 450 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYG 450 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcC
Confidence 48999999999999999999999999999999999999999887666667789999999996665 5999999974
No 339
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.71 E-value=3.8e-17 Score=130.50 Aligned_cols=78 Identities=29% Similarity=0.396 Sum_probs=64.7
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
++++++++.-..+ +.+|+.+||||+|||||||||++|+|...|++|+|...+ ..+++|++
T Consensus 4 i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~-----------~~~v~~l~ 72 (530)
T COG0488 4 ITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK-----------GLRVGYLS 72 (530)
T ss_pred EEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC-----------CceEEEeC
Confidence 4455555554333 399999999999999999999999999999999998732 24799999
Q ss_pred cCcccCCCCCHHHHHHHH
Q psy340 73 QEIALYGEFSIKETMMYF 90 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~ 90 (125)
|++.+++..||.+.+...
T Consensus 73 Q~~~~~~~~tv~~~v~~~ 90 (530)
T COG0488 73 QEPPLDPEKTVLDYVIEG 90 (530)
T ss_pred CCCCcCCCccHHHHHHhh
Confidence 999999999999988753
No 340
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.71 E-value=1.7e-17 Score=135.70 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=69.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||+++|+||||||||||+++|+|+.+|++|+|.+++ ++.++||+|++.+++. |++||+.+......
T Consensus 476 ~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~ 543 (659)
T TIGR00954 476 PSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSED 543 (659)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCc-CHHHHHhcCCChhh
Confidence 89999999999999999999999999999999998742 3579999999988877 99999987532211
Q ss_pred CC-hHHHHHHHHHHHHhCCCCc
Q psy340 96 ME-TPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 96 ~~-~~~~~~~~~~~l~~~~L~~ 116 (125)
.. .....+++.++++.+++++
T Consensus 544 ~~~~~~~~~~i~~~l~~~~l~~ 565 (659)
T TIGR00954 544 MKRRGLSDKDLEQILDNVQLTH 565 (659)
T ss_pred hhccCCCHHHHHHHHHHcCCHH
Confidence 10 1112345677888888864
No 341
>PRK13409 putative ATPase RIL; Provisional
Probab=99.71 E-value=1.1e-17 Score=135.32 Aligned_cols=101 Identities=24% Similarity=0.239 Sum_probs=70.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEE-----------EcCccCCCCCC--CcCCCeEEEEccCcccCCC-
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIW-----------VLGGKPGTKGS--GVPGKRVGYMPQEIALYGE- 80 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~-----------~~g~~~~~~~~--~~~~~~ig~v~Q~~~~~~~- 80 (125)
+++|+++||+|||||||||||++|+|+++|++|+|. ++|.++..... ......+++.+|....++.
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~ 175 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKV 175 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhh
Confidence 489999999999999999999999999999999997 88876532110 0111245655654433332
Q ss_pred --CCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 81 --FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 81 --~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.||.|++... +..+++.++++.++|.. .++.+.+|
T Consensus 176 ~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~L 213 (590)
T PRK13409 176 FKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISEL 213 (590)
T ss_pred hcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhC
Confidence 3888887631 23456788999999965 46666554
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=5.8e-17 Score=132.18 Aligned_cols=92 Identities=24% Similarity=0.383 Sum_probs=69.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc--ccCCCCCHHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI--ALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~ 93 (125)
.+|+++||+|||||||||||++|+|+.+|++|+|.+++ ...+||++|+. .+.+..++.+++.. .
T Consensus 336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~igy~~Q~~~~~l~~~~~~~~~~~~---~ 401 (638)
T PRK10636 336 VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-----------GIKLGYFAQHQLEFLRADESPLQHLAR---L 401 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-----------CEEEEEecCcchhhCCccchHHHHHHH---h
Confidence 89999999999999999999999999999999999852 13699999974 34556677766531 1
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
. .....+.+.++++.+++.. .++.+..|
T Consensus 402 ~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~L 431 (638)
T PRK10636 402 A---PQELEQKLRDYLGGFGFQGDKVTEETRRF 431 (638)
T ss_pred C---chhhHHHHHHHHHHcCCChhHhcCchhhC
Confidence 1 1223456788999999952 45556554
No 343
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.70 E-value=8.6e-18 Score=146.59 Aligned_cols=75 Identities=27% Similarity=0.407 Sum_probs=63.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEc-CccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVL-GGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~-g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||++||+||||||||||+++|+|+++|++|+|.++ |.++........++.||||+|++.+|+. |++||+.+.
T Consensus 408 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g 483 (1466)
T PTZ00265 408 LTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYS 483 (1466)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhc
Confidence 38999999999999999999999999999999999995 5665443333345789999999998874 999999985
No 344
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=2.6e-17 Score=114.25 Aligned_cols=101 Identities=23% Similarity=0.225 Sum_probs=85.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCC----CCC----CcCCCeEEEEccCcccCCCCCHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT----KGS----GVPGKRVGYMPQEIALYGEFSIKETM 87 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~----~~~----~~~~~~ig~v~Q~~~~~~~~tv~e~l 87 (125)
..|||++|=|||||||||||+++.+.+.|++|+|.+.-...+- ..+ ..+++.||||.|.....|..+..|.+
T Consensus 35 ~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVv 114 (235)
T COG4778 35 NAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVV 114 (235)
T ss_pred cCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHH
Confidence 7899999999999999999999999999999999987433221 111 12346799999999889999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCCc
Q psy340 88 MYFGWIFGMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
+-+....+.+.+..+.++.+++.++++++
T Consensus 115 aePll~~gv~~~~a~~~a~~Ll~rLnlpe 143 (235)
T COG4778 115 AEPLLARGVPREVARAKAADLLTRLNLPE 143 (235)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCCCH
Confidence 98888888888888999999999999975
No 345
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.69 E-value=2.4e-17 Score=144.10 Aligned_cols=91 Identities=23% Similarity=0.360 Sum_probs=74.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||.+||+|+||||||||+++|.|++. .+|+|.+||.++........+++++||||++.+|+. |+++|+.... .
T Consensus 1243 ~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~---~ 1317 (1490)
T TIGR01271 1243 EGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE---Q 1317 (1490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc---C
Confidence 8999999999999999999999999986 799999999998765444557889999999999986 9999996421 1
Q ss_pred CChHHHHHHHHHHHHhCCCC
Q psy340 96 METPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~ 115 (125)
.+ .+.+.++++.++|.
T Consensus 1318 ~t----deei~~aL~~~~L~ 1333 (1490)
T TIGR01271 1318 WS----DEEIWKVAEEVGLK 1333 (1490)
T ss_pred CC----HHHHHHHHHHCCCH
Confidence 12 34566677777774
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.68 E-value=2.6e-16 Score=128.33 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=44.8
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcC
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g 53 (125)
|++++|++|.-..+ +++|+++||+|||||||||||++|+|+.+|++|+|.+++
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~ 64 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence 36677776654332 289999999999999999999999999999999999865
No 347
>KOG0055|consensus
Probab=99.68 E-value=4.4e-17 Score=137.89 Aligned_cols=74 Identities=24% Similarity=0.359 Sum_probs=69.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
++|+.+||||||||||||.+.+|-..+.|++|.|.+||.++...+....|+++|.|.|+|.+|.. |++||+.|.
T Consensus 1014 ~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG 1087 (1228)
T KOG0055|consen 1014 RAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYG 1087 (1228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhcc
Confidence 78999999999999999999999999999999999999999887777778999999999998876 999999987
No 348
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.8e-17 Score=130.50 Aligned_cols=95 Identities=21% Similarity=0.331 Sum_probs=77.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+.+||.++|+|+||||||||+..|.|.+.|++|+|.++|.++........+..++++.|.+.+|.. |+++|+.+..
T Consensus 361 l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~--- 436 (573)
T COG4987 361 LAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLAN--- 436 (573)
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcC---
Confidence 389999999999999999999999999999999999999888665444456789999999998887 8999998742
Q ss_pred CCChHHHHHHHHHHHHhCCCCc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
+. ...+.+.++++.+||++
T Consensus 437 --~~-AsDEel~~aL~qvgL~~ 455 (573)
T COG4987 437 --PD-ASDEELWAALQQVGLEK 455 (573)
T ss_pred --CC-CCHHHHHHHHHHcCHHH
Confidence 11 22345666788888864
No 349
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.67 E-value=1.2e-16 Score=111.90 Aligned_cols=51 Identities=29% Similarity=0.301 Sum_probs=45.5
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcc
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA 76 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~ 76 (125)
.+++||+++|+||||||||||+++|+|+.+|++|+|.++|. .++|++|++.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~q~~~ 71 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKPQYID 71 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEcccCC
Confidence 34899999999999999999999999999999999999763 3789998754
No 350
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.66 E-value=1.3e-16 Score=108.11 Aligned_cols=49 Identities=31% Similarity=0.502 Sum_probs=44.9
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEcc
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q 73 (125)
.+++||+++|+||||||||||+++|+|+.+|++|+|+++|. ..++|++|
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~~ 70 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYFEQ 70 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEEcc
Confidence 34999999999999999999999999999999999999762 47899998
No 351
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.66 E-value=6e-17 Score=113.00 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=84.8
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
.+...||++-+||||||||||||-.++|+. |.+|+|.++|.+..........++-+|+.|+......|.|+.++.++
T Consensus 20 ~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~-- 96 (248)
T COG4138 20 GEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH-- 96 (248)
T ss_pred cccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc--
Confidence 455889999999999999999999999998 66999999998876554444556779999988777788899988763
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 93 IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.+..+....+.++...++|.+ ..|.++.|
T Consensus 97 ---qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qL 126 (248)
T COG4138 97 ---QPDKTRTELLNDVAGALALDDKLGRSTNQL 126 (248)
T ss_pred ---CchHHHHHHHHHHHhhhcccchhhhhhhhc
Confidence 234566677888889999987 36666554
No 352
>PLN03073 ABC transporter F family; Provisional
Probab=99.63 E-value=2e-15 Score=124.52 Aligned_cols=93 Identities=16% Similarity=0.284 Sum_probs=67.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH-HHh
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG-WIF 94 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~-~~~ 94 (125)
.+|++++|+|||||||||||++|+|+.+|++|+|.+++ +..|||++|++ ++.+++.++..+.. ..+
T Consensus 533 ~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~ 599 (718)
T PLN03073 533 DLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMAVFSQHH--VDGLDLSSNPLLYMMRCF 599 (718)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEEEEeccc--cccCCcchhHHHHHHHhc
Confidence 89999999999999999999999999999999998743 24699999985 33455555543322 111
Q ss_pred CCChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
... ..+.+.++++.+++.. .++.+..|
T Consensus 600 ~~~---~~~~i~~~L~~~gl~~~~~~~~~~~L 628 (718)
T PLN03073 600 PGV---PEQKLRAHLGSFGVTGNLALQPMYTL 628 (718)
T ss_pred CCC---CHHHHHHHHHHCCCChHHhcCCcccc
Confidence 111 1356778999999963 34555443
No 353
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=4.4e-16 Score=106.44 Aligned_cols=59 Identities=34% Similarity=0.514 Sum_probs=49.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEcc
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q 73 (125)
+++|++++|+||||||||||+++|+|+++|++|+|+++|.++.........+.++|++|
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 48999999999999999999999999999999999999876543211223467999998
No 354
>KOG0065|consensus
Probab=99.62 E-value=1.4e-15 Score=129.39 Aligned_cols=104 Identities=25% Similarity=0.362 Sum_probs=85.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC--cCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR--RLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
.||..+||+|+|||||||||++|+|-. ...+|+|.++|.+..+ ...+|.+|||.|++.-.+..||+|-|.|.+.+
T Consensus 815 kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~L 891 (1391)
T KOG0065|consen 815 KPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPELTVRESLRFSAAL 891 (1391)
T ss_pred cCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcccchHHHHHHHHHH
Confidence 999999999999999999999999964 4568999999976543 23568899999998777999999999998877
Q ss_pred hC---CChHHHHHHHHHHHHhCCCCc-cchhhh
Q psy340 94 FG---METPEIDDRLQFLLNFLDLPS-QSRLVK 122 (125)
Q Consensus 94 ~~---~~~~~~~~~~~~~l~~~~L~~-~~~~~~ 122 (125)
+. .+.++..+.++++++.++|++ .+..+.
T Consensus 892 Rlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG 924 (1391)
T KOG0065|consen 892 RLPKEVSDEEKYEYVEEVIELLELKEYADALVG 924 (1391)
T ss_pred cCCCcCCHHHHHHHHHHHHHHhCchhhhhhhcc
Confidence 63 345666688999999999976 454443
No 355
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.61 E-value=1.7e-15 Score=111.32 Aligned_cols=43 Identities=40% Similarity=0.617 Sum_probs=40.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT 58 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~ 58 (125)
++||++||||+||||||||-|+|+|+.+|++|+|+|+|.++..
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~ 79 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK 79 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh
Confidence 8999999999999999999999999999999999999987543
No 356
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=2.4e-15 Score=105.08 Aligned_cols=99 Identities=26% Similarity=0.308 Sum_probs=69.4
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCcc-----CCCCCCC----cCCCeEEEEccCcc--cCCCC-
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK-----PGTKGSG----VPGKRVGYMPQEIA--LYGEF- 81 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~-----~~~~~~~----~~~~~ig~v~Q~~~--~~~~~- 81 (125)
.++|||+.+|+|+|||||||||+||++-+.|++|+|.+...+ +...... ..+...|||.|+|. +-...
T Consensus 28 ~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VS 107 (258)
T COG4107 28 DLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVS 107 (258)
T ss_pred eecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeec
Confidence 359999999999999999999999999999999999987532 2221111 12346899999973 32222
Q ss_pred ---CHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC
Q psy340 82 ---SIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 82 ---tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 115 (125)
++.|-++..... ....+++.+.+|++.+.|+
T Consensus 108 AG~NiGERlma~G~R---HYG~iR~~a~~WL~~VEI~ 141 (258)
T COG4107 108 AGGNIGERLMAIGAR---HYGNIRAEAQDWLEEVEID 141 (258)
T ss_pred cCCccchhHHhhhhh---hhhhHHHHHHHHHHhcccC
Confidence 344444332221 2345677788999999885
No 357
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.60 E-value=7.2e-15 Score=113.24 Aligned_cols=112 Identities=21% Similarity=0.298 Sum_probs=90.3
Q ss_pred hccccCCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CceeEEEcCccCCCCCC----CcCCCeEEEEccCc--ccCC
Q psy340 11 KKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGTKGS----GVPGKRVGYMPQEI--ALYG 79 (125)
Q Consensus 11 ~~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-----~~G~i~~~g~~~~~~~~----~~~~~~ig~v~Q~~--~~~~ 79 (125)
.+=.+++||.+||||+||||||-..+.|+++++. -+|+|.|+|.++..... ..+..+|+++||+| .+.|
T Consensus 29 isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNP 108 (534)
T COG4172 29 ISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNP 108 (534)
T ss_pred ceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCc
Confidence 3445699999999999999999999999999854 37899999998765332 23456899999998 6788
Q ss_pred CCCHHHHHHHHHHHh-CCChHHHHHHHHHHHHhCCCCccchhhh
Q psy340 80 EFSIKETMMYFGWIF-GMETPEIDDRLQFLLNFLDLPSQSRLVK 122 (125)
Q Consensus 80 ~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 122 (125)
-.|+...+.-....+ +....+.++++.++|+.+||++..+.++
T Consensus 109 l~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~ 152 (534)
T COG4172 109 LHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLD 152 (534)
T ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhh
Confidence 889999888766554 5677888999999999999987544443
No 358
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.59 E-value=1.1e-15 Score=98.69 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=53.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++|++++|+||||||||||++++. +|++.++|.++........++.++|++|+ ....+++||+.++
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~ti~~Ni~~~ 78 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIRLRLNIFLI 78 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhhHHhhceee
Confidence 4679999999999999999999986 88999999887654433445667888877 3345899999874
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.59 E-value=3e-15 Score=131.18 Aligned_cols=63 Identities=27% Similarity=0.453 Sum_probs=57.7
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
+++|++++|+|||||||||||++|+|+++|++|+|.++| .|+||+|++.+++. |++||+.|..
T Consensus 449 i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~-Ti~eNI~~g~ 511 (1490)
T TIGR01271 449 LEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPG-TIKDNIIFGL 511 (1490)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCc-cHHHHHHhcc
Confidence 389999999999999999999999999999999999865 49999999988875 9999999753
No 360
>KOG0056|consensus
Probab=99.56 E-value=5.5e-16 Score=121.84 Aligned_cols=74 Identities=24% Similarity=0.405 Sum_probs=64.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
.+|+.+|||||||+||||++|++..+....+|+|.+||+|+..-.....|..||+||||..+|.+ |+..|+.+.
T Consensus 562 ~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIrya 635 (790)
T KOG0056|consen 562 QPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYA 635 (790)
T ss_pred cCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeec
Confidence 89999999999999999999999999999999999999998653222356789999999888776 888888763
No 361
>PLN03130 ABC transporter C family member; Provisional
Probab=99.56 E-value=6.5e-15 Score=129.75 Aligned_cols=62 Identities=19% Similarity=0.447 Sum_probs=56.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCc-eeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNT-GEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~-G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++|+.++|+||+|||||||+++|.|.++|++ |+|.+ +..|+||+|++.++.. |++||+.+.
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~Q~p~Lfng-TIreNI~fg 702 (1622)
T PLN03130 640 VPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSWIFNA-TVRDNILFG 702 (1622)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEEcCccccCCC-CHHHHHhCC
Confidence 48999999999999999999999999999999 89975 3579999999987764 999999985
No 362
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.55 E-value=1e-14 Score=128.05 Aligned_cols=62 Identities=26% Similarity=0.509 Sum_probs=56.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++|++++|+||||||||||+++|+|+++|++|+|.++| .++||+|++.++ +.|++||+.+.
T Consensus 661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~-~~Ti~eNI~~g 722 (1522)
T TIGR00957 661 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQ-NDSLRENILFG 722 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCcccc-CCcHHHHhhcC
Confidence 389999999999999999999999999999999999864 599999998765 46999999975
No 363
>PTZ00243 ABC transporter; Provisional
Probab=99.54 E-value=1.8e-14 Score=126.72 Aligned_cols=62 Identities=26% Similarity=0.634 Sum_probs=55.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++|++++|+|||||||||||++|+|+++|++|+|.+. ..|+|++|++.++ ..|++||+.+.
T Consensus 683 i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~-~~Tv~enI~~~ 744 (1560)
T PTZ00243 683 VPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIM-NATVRGNILFF 744 (1560)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccC-CCcHHHHHHcC
Confidence 38999999999999999999999999999999999762 4699999998776 46999999974
No 364
>PLN03232 ABC transporter C family member; Provisional
Probab=99.54 E-value=1.6e-14 Score=126.79 Aligned_cols=63 Identities=22% Similarity=0.387 Sum_probs=55.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++|+.++|+||+|||||||+++|.|.++|++|.+.. .+..|+||+|++.++.. |++||+.+.
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~------------~~~~Iayv~Q~p~Lf~g-TIreNI~fg 702 (1495)
T PLN03232 640 IPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV------------IRGSVAYVPQVSWIFNA-TVRENILFG 702 (1495)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE------------ecCcEEEEcCccccccc-cHHHHhhcC
Confidence 3899999999999999999999999999999987641 24679999999988865 999999986
No 365
>KOG0054|consensus
Probab=99.54 E-value=2.9e-15 Score=128.84 Aligned_cols=73 Identities=23% Similarity=0.379 Sum_probs=67.2
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
+++||.+||||+.|||||||+.+|.++..|.+|+|.+||.|+........|++++++||+|.+|.. |++.|+.
T Consensus 1163 I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLD 1235 (1381)
T KOG0054|consen 1163 IKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLD 1235 (1381)
T ss_pred EcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccC
Confidence 489999999999999999999999999999999999999998876555667899999999999887 9999987
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.53 E-value=4.2e-14 Score=113.13 Aligned_cols=92 Identities=21% Similarity=0.254 Sum_probs=70.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc-ccCCCCCHHHHHHHHHHHh
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI-ALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~-~~~~~~tv~e~l~~~~~~~ 94 (125)
.+|+.+|||||||+||||||++|+|...|.+|+|.+. ..-.+||+.|+. .+.+..|+.|++.-...-
T Consensus 346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g-----------~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~- 413 (530)
T COG0488 346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-----------ETVKIGYFDQHRDELDPDKTVLEELSEGFPD- 413 (530)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC-----------CceEEEEEEehhhhcCccCcHHHHHHhhCcc-
Confidence 8999999999999999999999999999999999873 124799999997 555777888887753211
Q ss_pred CCChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
.....+...|..|+++. ..+.+..|
T Consensus 414 -----~~e~~~r~~L~~f~F~~~~~~~~v~~L 440 (530)
T COG0488 414 -----GDEQEVRAYLGRFGFTGEDQEKPVGVL 440 (530)
T ss_pred -----ccHHHHHHHHHHcCCChHHHhCchhhc
Confidence 11456777888888854 34445443
No 367
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.47 E-value=5.6e-15 Score=113.64 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=56.8
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCC
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~ 81 (125)
=++..||++.|+|.||||||||++.++|+.+|++|+|.+||.++........|.-++-||.|..+|+.+
T Consensus 344 l~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~l 412 (546)
T COG4615 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQL 412 (546)
T ss_pred eEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhh
Confidence 345789999999999999999999999999999999999999887655444455677777776666543
No 368
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.47 E-value=1.4e-13 Score=96.27 Aligned_cols=52 Identities=19% Similarity=0.244 Sum_probs=40.7
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEcc
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q 73 (125)
=.+++|++++|+|||||||||||++|. +++|++.+++.... ..+..++|++|
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~-----~~~~~~~~~~q 67 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPK-----FSRNKLIFIDQ 67 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccc-----cccccEEEEhH
Confidence 356899999999999999999999995 36999998765221 12345889887
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.41 E-value=1.9e-13 Score=97.09 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=46.5
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCc---------eeEEEcCccCCCCCCCcCCCeEEEEccCcccC
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNT---------GEIWVLGGKPGTKGSGVPGKRVGYMPQEIALY 78 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~---------G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~ 78 (125)
.+++| +++|+||||||||||+++|+|+.++.. |++.+.|.+.... ...+.++||||++..+
T Consensus 19 ~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~ 88 (197)
T cd03278 19 PFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR 88 (197)
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc
Confidence 34788 999999999999999999999986553 4576666654321 2246899999998654
No 370
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=8.4e-14 Score=107.62 Aligned_cols=75 Identities=24% Similarity=0.379 Sum_probs=66.0
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
.++|+.++++||||+||||+++.|..++.+++|.|.++|++++.......++.||.|||+..+|.. |...|+.+.
T Consensus 286 i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~yg 360 (497)
T COG5265 286 IPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYG 360 (497)
T ss_pred ccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhcc
Confidence 489999999999999999999999999999999999999998765444556789999999887765 788888764
No 371
>PLN03073 ABC transporter F family; Provisional
Probab=99.40 E-value=4.7e-14 Score=116.50 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=35.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC---cCCceeEEEcCcc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR---RLNTGEIWVLGGK 55 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~---~~~~G~i~~~g~~ 55 (125)
.+|+++||||||||||||||++|+|.. .|.+|+|.+.+++
T Consensus 201 ~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 201 AFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE 243 (718)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence 899999999999999999999999964 5788999766554
No 372
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.37 E-value=4.8e-14 Score=103.24 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=67.4
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCC-ceeEEEcCc-cCCCCC--CCcCCCeEEEEccCc---------ccCCCCCH
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLN-TGEIWVLGG-KPGTKG--SGVPGKRVGYMPQEI---------ALYGEFSI 83 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~-~G~i~~~g~-~~~~~~--~~~~~~~ig~v~Q~~---------~~~~~~tv 83 (125)
...+++||||||||||||+++|++++.+. .|++.+.+. +..... .......+++++|++ .+.+.++|
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 35699999999999999999999999876 468877665 321111 112335899999985 34567788
Q ss_pred HHHHHHHHHHhC-C-ChHHHHHHHHHHHHhCCCC
Q psy340 84 KETMMYFGWIFG-M-ETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 84 ~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~~~L~ 115 (125)
.+++........ . ......+++.++++.++|.
T Consensus 104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~ 137 (251)
T cd03273 104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLN 137 (251)
T ss_pred EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCC
Confidence 877754321111 1 1233457788899999985
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.35 E-value=1e-12 Score=95.42 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=49.4
Q ss_pred CCcEEEEECCCCCCHHHHHHHHh----------------CCCcCCce--------eEEEcCccCCCC---CCCcCCCeEE
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIV----------------GRRRLNTG--------EIWVLGGKPGTK---GSGVPGKRVG 69 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~----------------g~~~~~~G--------~i~~~g~~~~~~---~~~~~~~~ig 69 (125)
.|++++|+||||||||||+++|+ +++.+.+| +|.|++.+.... .....++.++
T Consensus 22 ~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig 101 (243)
T cd03272 22 SPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIG 101 (243)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEE
Confidence 48899999999999999999998 44555566 666655322111 1112345689
Q ss_pred EEccCcccCC-CCCHHHHHHH
Q psy340 70 YMPQEIALYG-EFSIKETMMY 89 (125)
Q Consensus 70 ~v~Q~~~~~~-~~tv~e~l~~ 89 (125)
+++|+..+++ ..+..|...+
T Consensus 102 ~~~~~~~l~~~~~t~~ei~~~ 122 (243)
T cd03272 102 LKKDEYFLDKKNVTKNDVMNL 122 (243)
T ss_pred CCCCEEEECCeEcCHHHHHHH
Confidence 9999887776 4566555444
No 374
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.33 E-value=3e-12 Score=103.19 Aligned_cols=87 Identities=23% Similarity=0.336 Sum_probs=68.8
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
.+++||-+-|.||||||||||+|+|+|+.+..+|.|.+- ....+-|+||.|.+... |.+|.+.++...
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-----------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~ 482 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-----------ADSALLFLPQRPYLPQG-TLREALCYPNAA 482 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC-----------CCCceEEecCCCCCCCc-cHHHHHhCCCCC
Confidence 348999999999999999999999999999999998651 12458999999876555 999999886433
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
...+ .+.+.++|.+++|++
T Consensus 483 ~~~~----d~~l~~vL~~vgL~~ 501 (604)
T COG4178 483 PDFS----DAELVAVLHKVGLGD 501 (604)
T ss_pred CCCC----hHHHHHHHHHcCcHH
Confidence 2222 345677888888865
No 375
>KOG0054|consensus
Probab=99.33 E-value=3.7e-12 Score=110.05 Aligned_cols=66 Identities=29% Similarity=0.439 Sum_probs=57.8
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
=+.++|+.+||+||-|||||+||.+|.|.++..+|++.++| .++||+|.|-++. -||+||+.|...
T Consensus 542 ~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------siaYv~Q~pWI~n-gTvreNILFG~~ 607 (1381)
T KOG0054|consen 542 FEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SVAYVPQQPWIQN-GTVRENILFGSP 607 (1381)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------eEEEeccccHhhC-CcHHHhhhcCcc
Confidence 34588999999999999999999999999999999999865 3899999986555 599999998643
No 376
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.30 E-value=7.3e-13 Score=94.28 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=55.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
..|++++|+||||||||||+++|+|... +.+.|..+.. . .+++|...+++.+++.|++.+....+
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a-------~--~~~~q~~~l~~~~~~~d~l~~~~s~~- 87 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA-------S--SFELPPVKIFTSIRVSDDLRDGISYF- 87 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec-------C--ccCcccceEEEeccchhccccccChH-
Confidence 6789999999999999999999988553 1123332211 1 36677667899999999987643221
Q ss_pred CChHHHHHHHHHHHHhCCC
Q psy340 96 METPEIDDRLQFLLNFLDL 114 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L 114 (125)
..+. .++.++++.+++
T Consensus 88 --~~e~-~~~~~iL~~~~~ 103 (199)
T cd03283 88 --YAEL-RRLKEIVEKAKK 103 (199)
T ss_pred --HHHH-HHHHHHHHhccC
Confidence 2333 567778877773
No 377
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.30 E-value=1.7e-11 Score=86.18 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=56.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc--ccCCCCCHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI--ALYGEFSIKETMMYFGW 92 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~ 92 (125)
..+|+.++|+||||||||||+++|+++++|+.|.|.+.+...... .....+++++|.. ..++..++.+.+....+
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR 98 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL---PHPNWVRLVTRPGNVEGSGEVTMADLLRSALR 98 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC---CCCCEEEEEEecCCCCCCCccCHHHHHHHHhc
Confidence 477999999999999999999999999999999999965322111 1234566666543 34667888888876554
Q ss_pred H
Q psy340 93 I 93 (125)
Q Consensus 93 ~ 93 (125)
.
T Consensus 99 ~ 99 (186)
T cd01130 99 M 99 (186)
T ss_pred c
Confidence 3
No 378
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.24 E-value=2.2e-12 Score=101.63 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=45.8
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCce-eEEEcCccCCCCCCCcCCCeEEEEccCc
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTG-EIWVLGGKPGTKGSGVPGKRVGYMPQEI 75 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~ig~v~Q~~ 75 (125)
.+++||+++|+|||||||||||+ +|+..|++| +|.++|.++..+..... ..+-+|||+.
T Consensus 28 ~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai-~~LR~VFQ~f 87 (504)
T TIGR03238 28 ELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAM-ETLDEIFDGF 87 (504)
T ss_pred eecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHH-HHHHHHHHhh
Confidence 46899999999999999999999 788888888 79999988765432211 1222888875
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.22 E-value=5.7e-12 Score=89.92 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=50.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHh----CCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc-----ccCCCCCHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIV----GRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI-----ALYGEFSIKET 86 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~----g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~-----~~~~~~tv~e~ 86 (125)
.+| +++|+|||||||||||++|. |..+|.+|.+..+...+... .....++++||++ .....+++.++
T Consensus 21 ~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~---~~~~~v~~~f~~~~~~~~~v~r~~~~~~~ 96 (204)
T cd03240 21 FSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREG---EVRAQVKLAFENANGKKYTITRSLAILEN 96 (204)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCC---CCcEEEEEEEEeCCCCEEEEEEEhhHhhc
Confidence 566 99999999999999999994 98888887765222222221 2345799999987 34455688888
Q ss_pred HHH
Q psy340 87 MMY 89 (125)
Q Consensus 87 l~~ 89 (125)
+.+
T Consensus 97 ~~~ 99 (204)
T cd03240 97 VIF 99 (204)
T ss_pred eee
Confidence 754
No 380
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.16 E-value=1.1e-11 Score=91.95 Aligned_cols=67 Identities=19% Similarity=0.162 Sum_probs=51.3
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC-CCcCCCeEEEEccCcccCCCCCHHHH
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG-SGVPGKRVGYMPQEIALYGEFSIKET 86 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~-~~~~~~~ig~v~Q~~~~~~~~tv~e~ 86 (125)
.-++|+||||||||||+++|+|++.|.+|+|.++|.++.... .......+++++|+. +.+.++|.++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDG 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-cccccccccc
Confidence 578999999999999999999999999999999998775321 112234577888864 4556666654
No 381
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.15 E-value=6.5e-11 Score=83.10 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=40.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~ 75 (125)
|++++|+||||||||||+++|++...+ .+.+.+..+...........+++++|++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999998765 4666555444332222234678888874
No 382
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.13 E-value=1.3e-10 Score=91.13 Aligned_cols=66 Identities=23% Similarity=0.334 Sum_probs=54.6
Q ss_pred hccccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 11 KKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 11 ~~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
..+.++.||+++++||||-||||++++|+|.++|++|+ . . .-+++|=||.-......||.+.+.-.
T Consensus 360 ~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~---~----------~~~vSyKPQyI~~~~~gtV~~~l~~~ 425 (591)
T COG1245 360 EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-E---E----------DLKVSYKPQYISPDYDGTVEDLLRSA 425 (591)
T ss_pred cCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-C---c----------cceEeecceeecCCCCCcHHHHHHHh
Confidence 34566899999999999999999999999999999988 1 1 23688888876666778999988753
No 383
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.13 E-value=4.5e-10 Score=81.24 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.6
Q ss_pred ccCCCcEEEEECCCCCCHHHHH-HHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLL-SCI 38 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL-~~i 38 (125)
.+++||++||+||||||||||+ .+|
T Consensus 17 ~i~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 17 DIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred ecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 4589999999999999999996 444
No 384
>KOG0064|consensus
Probab=99.12 E-value=1.6e-10 Score=91.89 Aligned_cols=66 Identities=18% Similarity=0.364 Sum_probs=53.1
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
++++|--+-|+||||||||+|+|+|.|+.|...|.... .+...+-|+||.|..- .-|.+|.+.++.
T Consensus 504 ~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~-----------P~~~~mFYIPQRPYms-~gtlRDQIIYPd 569 (728)
T KOG0064|consen 504 QIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI-----------PRPNNIFYIPQRPYMS-GGTLRDQIIYPD 569 (728)
T ss_pred EecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec-----------CCCcceEeccCCCccC-cCcccceeecCC
Confidence 45899999999999999999999999999887776654 1234699999998654 557888887753
No 385
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.11 E-value=3.3e-11 Score=84.26 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=49.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
+|++++|+|+||||||||+++|++++.+ +.++|.++.... .......|+.+|+...++..++..++.+..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~-~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 71 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAK-NIDKMSQGIPLTDEDRLPWLERLNDASYSL 71 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHh-HHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence 6999999999999999999999999877 577776653211 111123566677655556667777776543
No 386
>KOG0060|consensus
Probab=99.10 E-value=1.5e-10 Score=92.65 Aligned_cols=94 Identities=19% Similarity=0.228 Sum_probs=67.0
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
+.++|+-+-|.||||||||+|+|+++|+.+..+|.+..-. .. ....+-||||.|..... |.++.+.++...
T Consensus 457 ~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~----~~----~~~~lfflPQrPYmt~G-TLRdQvIYP~~~ 527 (659)
T KOG0060|consen 457 EVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPT----DG----GPKDLFFLPQRPYMTLG-TLRDQVIYPLKA 527 (659)
T ss_pred EecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecc----cC----CCCceEEecCCCCcccc-chhheeeccCcc
Confidence 3589999999999999999999999999998999997521 11 11468999999864444 999999987432
Q ss_pred h-CCChHHHHHHHHHHHHhCCCCc
Q psy340 94 F-GMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 94 ~-~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
. ........+++.+.|+.++|.+
T Consensus 528 ~~~~~~~~~d~~i~r~Le~v~L~h 551 (659)
T KOG0060|consen 528 EDMDSKSASDEDILRILENVQLGH 551 (659)
T ss_pred ccccccCCCHHHHHHHHHHhhhhh
Confidence 1 1111122345566666666654
No 387
>KOG0927|consensus
Probab=99.10 E-value=1.4e-10 Score=92.12 Aligned_cols=94 Identities=23% Similarity=0.249 Sum_probs=64.9
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc--ccCCCCCHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI--ALYGEFSIKETMMYFGW 92 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~ 92 (125)
+..++.+++||||||||||||++++|.+.|..|.|.-.- ...+++..|+. .+.-..++.|++.-.
T Consensus 413 id~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~-----------H~~~~~y~Qh~~e~ldl~~s~le~~~~~-- 479 (614)
T KOG0927|consen 413 IDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS-----------HNKLPRYNQHLAEQLDLDKSSLEFMMPK-- 479 (614)
T ss_pred cCcccceeEecCCCCchhhhHHHHhhccccccccccccc-----------cccchhhhhhhHhhcCcchhHHHHHHHh--
Confidence 378999999999999999999999999999999986421 12455666654 444555666665432
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 93 IFGMETPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
+. .....+.+..++.++||.. ....++.|
T Consensus 480 -~~--~~~~~e~~r~ilgrfgLtgd~q~~p~~~L 510 (614)
T KOG0927|consen 480 -FP--DEKELEEMRSILGRFGLTGDAQVVPMSQL 510 (614)
T ss_pred -cc--ccchHHHHHHHHHHhCCCccccccchhhc
Confidence 21 1233456778899999973 34444443
No 388
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.08 E-value=1.3e-11 Score=88.68 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=35.7
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
++++|+||||||||||+++|.- +.|.+... .+..++++++|...+++.+++.+++.+
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~----------~~G~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~ 82 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLF----------VFGFRASK----MRQKKLSDLIHNSAGHPNLDSCSVEVH 82 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHH----------HhccCHHH----hhhhhHHHHhcCCCCCCCCceEEEEEE
Confidence 7999999999999999999972 22222110 112345666666555555555554443
No 389
>KOG0065|consensus
Probab=99.07 E-value=4.1e-10 Score=96.68 Aligned_cols=99 Identities=27% Similarity=0.346 Sum_probs=77.7
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCc---CCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRR---LNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~---~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
.++|+.+.++||.||||||||++++|-.. ...|+|.++|.+...... ++.++|++|++.-++.|||+|-+.|.+
T Consensus 138 ~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lTVreTldFa~ 214 (1391)
T KOG0065|consen 138 IKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELTVRETLDFAA 214 (1391)
T ss_pred EcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeEEeehhhHHH
Confidence 39999999999999999999999999753 235699999987654322 578999999999999999999999987
Q ss_pred HHhC-------CChHHHH-HHHHHHHHhCCCCc
Q psy340 92 WIFG-------METPEID-DRLQFLLNFLDLPS 116 (125)
Q Consensus 92 ~~~~-------~~~~~~~-~~~~~~l~~~~L~~ 116 (125)
+... ..+.+.. +..+.+++.+||+.
T Consensus 215 rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~ 247 (1391)
T KOG0065|consen 215 RCKGPGSRYDEVSRREKLAAMTDYLLKILGLDH 247 (1391)
T ss_pred hccCCccccccccHHHHHHHHHHHHHHHhCchh
Confidence 6532 1222211 24667899999975
No 390
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=99.06 E-value=2.9e-10 Score=89.24 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=58.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCcee---EEEcCccCCCC------CCCcCCCeEEEEccCcccCCCCCHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGE---IWVLGGKPGTK------GSGVPGKRVGYMPQEIALYGEFSIKET 86 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~---i~~~g~~~~~~------~~~~~~~~ig~v~Q~~~~~~~~tv~e~ 86 (125)
.+|++++|+|+||||||||+++|+|+..++.+. |-.++.++... .....+..+++++|+...+..+++.++
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~ 232 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATEL 232 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHH
Confidence 789999999999999999999999999887643 33333332110 011223469999999999999999999
Q ss_pred HHHHHHHh
Q psy340 87 MMYFGWIF 94 (125)
Q Consensus 87 l~~~~~~~ 94 (125)
....+.++
T Consensus 233 a~~iAEyf 240 (434)
T PRK07196 233 CHAIATYY 240 (434)
T ss_pred HHHHHHHh
Confidence 88766543
No 391
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.03 E-value=1.8e-10 Score=82.51 Aligned_cols=58 Identities=17% Similarity=0.088 Sum_probs=37.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-cCCceeEEEcC-ccCCCCCCCcCCCeEEEEccCcc
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR-RLNTGEIWVLG-GKPGTKGSGVPGKRVGYMPQEIA 76 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~-~~~~G~i~~~g-~~~~~~~~~~~~~~ig~v~Q~~~ 76 (125)
+|++++|+||||||||||+++|++.+ .+..+...... .+... .......|+++||+..
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~--~~~~~~~v~~~f~~~~ 86 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFA--PGEDTAEVSFTFQLGG 86 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhc--CCCccEEEEEEEEECC
Confidence 47899999999999999999999643 34444443221 11111 1123457899998763
No 392
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.03 E-value=8.6e-10 Score=81.59 Aligned_cols=106 Identities=19% Similarity=0.138 Sum_probs=63.7
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHh--------CC--CcCCc-----------eeEEEcCccCCCCCCCcCC------
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIV--------GR--RRLNT-----------GEIWVLGGKPGTKGSGVPG------ 65 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~--------g~--~~~~~-----------G~i~~~g~~~~~~~~~~~~------ 65 (125)
=+++.|.+++|.|+||||||||++.+. +. ..|.. --|.++..++.......+.
T Consensus 16 ~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ty~~~~ 95 (261)
T cd03271 16 VDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPATYTGVF 95 (261)
T ss_pred eeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHHHHHHH
Confidence 356999999999999999999998662 11 01211 1245554444322110100
Q ss_pred --------------------CeEEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc--cchhhhh
Q psy340 66 --------------------KRVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS--QSRLVKN 123 (125)
Q Consensus 66 --------------------~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~ 123 (125)
..+.|..+....+..+|+.|++.|+..... .+++.++++.++|.+ .++.+.+
T Consensus 96 ~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~l~l~~~~~~ 169 (261)
T cd03271 96 DEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGYIKLGQPATT 169 (261)
T ss_pred HHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCchhhhcCcccc
Confidence 124455555556678999999888654431 245677899999964 3454444
Q ss_pred c
Q psy340 124 L 124 (125)
Q Consensus 124 L 124 (125)
|
T Consensus 170 L 170 (261)
T cd03271 170 L 170 (261)
T ss_pred C
Confidence 3
No 393
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.02 E-value=1.2e-10 Score=83.07 Aligned_cols=30 Identities=37% Similarity=0.351 Sum_probs=27.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRL 44 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~ 44 (125)
.++|++++|+||||||||||+++|++++++
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 367999999999999999999999999875
No 394
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.96 E-value=1.4e-09 Score=81.42 Aligned_cols=74 Identities=28% Similarity=0.307 Sum_probs=51.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEc---CccCCCCCCCcCCCeEEEEccCccc---C-CCCCHHHHHHHH
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVL---GGKPGTKGSGVPGKRVGYMPQEIAL---Y-GEFSIKETMMYF 90 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~---g~~~~~~~~~~~~~~ig~v~Q~~~~---~-~~~tv~e~l~~~ 90 (125)
+++++++|+||+|||||++.|.|...+..|++... |...+...........+++.+.|.+ . ..++..+...++
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~f 240 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEELAHYF 240 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHHHHHHh
Confidence 58999999999999999999999999999998752 3222221111111235788888865 3 467777777664
Q ss_pred H
Q psy340 91 G 91 (125)
Q Consensus 91 ~ 91 (125)
.
T Consensus 241 ~ 241 (287)
T cd01854 241 P 241 (287)
T ss_pred H
Confidence 4
No 395
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.96 E-value=3.6e-09 Score=84.05 Aligned_cols=109 Identities=18% Similarity=0.301 Sum_probs=84.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEEEEccC---cccCCCCCHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYMPQE---IALYGEFSIKETMMYFG 91 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig~v~Q~---~~~~~~~tv~e~l~~~~ 91 (125)
.+|||+||.|-=|||+|-|+++|.|..++.+|+|.++|+++....+ ...+..|+||+.| ..++..+++.+|+.+..
T Consensus 283 r~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~ 362 (500)
T COG1129 283 RAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLAS 362 (500)
T ss_pred eCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHh
Confidence 8999999999999999999999999999999999999987654332 2334579999988 37899999999998762
Q ss_pred --HHh---CCChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 92 --WIF---GMETPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 92 --~~~---~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
.+. -.......+.+.++.+.+++.. .+..+.+|
T Consensus 363 l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~L 402 (500)
T COG1129 363 LRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTL 402 (500)
T ss_pred hhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcC
Confidence 111 1334555677888999999853 34444443
No 396
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.94 E-value=6.7e-10 Score=83.27 Aligned_cols=75 Identities=8% Similarity=0.052 Sum_probs=52.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc--CCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRR--LNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
-.++||.||||||||||+++|.+++. |.+|.|.+-+.|....... .....++. |....++.+++.+.+.+...+.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~-~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQ-VLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHH-HHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 36999999999999999999999886 6788887755554322111 11235543 6666778888888877754443
No 397
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.94 E-value=3.7e-09 Score=83.27 Aligned_cols=101 Identities=21% Similarity=0.333 Sum_probs=81.7
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccC-CCCCC-CcCCCeEEEEccCc---ccCCCCCHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP-GTKGS-GVPGKRVGYMPQEI---ALYGEFSIKETMMY 89 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~-~~~~~-~~~~~~ig~v~Q~~---~~~~~~tv~e~l~~ 89 (125)
..+|||+||.|-.|-|-+-|+.+|+|+.++.+|+|.++|.++ ..... ..++..++|||++. .+.+.+++.||+.+
T Consensus 281 Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL 360 (501)
T COG3845 281 VRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVL 360 (501)
T ss_pred EecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhh
Confidence 389999999999999999999999999999999999999986 22222 22345799999985 67899999999987
Q ss_pred HHHH------hC-CChHHHHHHHHHHHHhCCCC
Q psy340 90 FGWI------FG-METPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 90 ~~~~------~~-~~~~~~~~~~~~~l~~~~L~ 115 (125)
.... ++ ....+..+.+.++++.+++-
T Consensus 361 ~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr 393 (501)
T COG3845 361 GRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR 393 (501)
T ss_pred hhccccccccccccCHHHHHHHHHHHHHHcCcc
Confidence 5321 12 34577788899999999984
No 398
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.93 E-value=6.6e-10 Score=87.43 Aligned_cols=62 Identities=21% Similarity=0.226 Sum_probs=48.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcC---ccCCCCC----CCcCCCeEEEEccCcc
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG---GKPGTKG----SGVPGKRVGYMPQEIA 76 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g---~~~~~~~----~~~~~~~ig~v~Q~~~ 76 (125)
+.+|++++|+||||||||||+++|+++..|+.|.|.+.| .++.... ...+++.|+||+|...
T Consensus 162 I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 162 LCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 588999999999999999999999999999999988754 3332211 1123468999999753
No 399
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.93 E-value=5.5e-10 Score=84.73 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=56.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC------CCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG------SGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~------~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
.+|++++|+||||+||||++..|++.+.+..++|.+.+.|..... ....+..+.+++|.....+..++.+.+..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999888889998777654321 01123458899887666666667777664
Q ss_pred H
Q psy340 90 F 90 (125)
Q Consensus 90 ~ 90 (125)
.
T Consensus 192 ~ 192 (318)
T PRK10416 192 A 192 (318)
T ss_pred H
Confidence 3
No 400
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.93 E-value=1.1e-09 Score=79.36 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=49.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCcee----EEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGE----IWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~----i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
.+..++||.||||||||||+++|++++++.+|. +.+++.... . ......+++++. ..+..+++.+...+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~---~-~~~~~~g~~~~~-~~~~~~d~~~~~~~l~ 105 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLD---N-AVLDAHGLRPRK-GAPETFDVAGLAALLR 105 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCC---H-HHHHhccccccc-CCCCCCCHHHHHHHHH
Confidence 557899999999999999999999999999998 444432111 0 111235776653 3445677777766644
Q ss_pred HH
Q psy340 92 WI 93 (125)
Q Consensus 92 ~~ 93 (125)
.+
T Consensus 106 ~l 107 (229)
T PRK09270 106 RL 107 (229)
T ss_pred HH
Confidence 43
No 401
>PRK01889 GTPase RsgA; Reviewed
Probab=98.93 E-value=2.7e-09 Score=82.09 Aligned_cols=63 Identities=25% Similarity=0.323 Sum_probs=48.8
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCC
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYG 79 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~ 79 (125)
.+.+|++++|+|+||+|||||+++|+|...+..|+|.+++..... ....+.+.+++|...+++
T Consensus 191 ~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~D 253 (356)
T PRK01889 191 WLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLID 253 (356)
T ss_pred HhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecC
Confidence 457899999999999999999999999999999999987643211 122356788887654443
No 402
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.92 E-value=1e-09 Score=87.19 Aligned_cols=62 Identities=23% Similarity=0.436 Sum_probs=47.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
..|.+++|+||||+||||++..|++.+....|. .+|++|.+++ ...++.|++.+++..++
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt---~RigA~EQLr~~AeilG 313 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS---YRIGGHEQLRIYGKILG 313 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc---cchhHHHHHHHHHHHhC
Confidence 568999999999999999999999876544432 2567777765 34678888888777665
Q ss_pred CC
Q psy340 96 ME 97 (125)
Q Consensus 96 ~~ 97 (125)
.+
T Consensus 314 Vp 315 (484)
T PRK06995 314 VP 315 (484)
T ss_pred CC
Confidence 44
No 403
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.91 E-value=1.2e-09 Score=78.78 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=70.3
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcC----CceeEEEcCccCCCCCCCc----CCCeEEEEccCc--ccCCCCCH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRL----NTGEIWVLGGKPGTKGSGV----PGKRVGYMPQEI--ALYGEFSI 83 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~----~~G~i~~~g~~~~~~~~~~----~~~~ig~v~Q~~--~~~~~~tv 83 (125)
-+.+||+.||||+||||||-..++|+|..+- +.....|++.+......+. ..+.|+++||+| -+.|..+|
T Consensus 29 tlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~i 108 (330)
T COG4170 29 TLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERV 108 (330)
T ss_pred eeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHH
Confidence 3489999999999999999999999998643 3455667776655433322 245789999998 46677667
Q ss_pred HHHHHHHH--HHh-CCC---hHHHHHHHHHHHHhCCCCc
Q psy340 84 KETMMYFG--WIF-GME---TPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 84 ~e~l~~~~--~~~-~~~---~~~~~~~~~~~l~~~~L~~ 116 (125)
...+.... +.+ +.. -...+.++-++|.++|+.+
T Consensus 109 G~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKd 147 (330)
T COG4170 109 GRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKD 147 (330)
T ss_pred HHHHHhhCccccccchHhhhhchhHHHHHHHHHHhcccc
Confidence 66655321 111 100 1223467788999999975
No 404
>PRK00098 GTPase RsgA; Reviewed
Probab=98.91 E-value=4.2e-09 Score=79.20 Aligned_cols=74 Identities=28% Similarity=0.282 Sum_probs=51.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEE---cCccCCCCCCCcCCCeEEEEccCcccC----CCCCHHHHHHH
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWV---LGGKPGTKGSGVPGKRVGYMPQEIALY----GEFSIKETMMY 89 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~ig~v~Q~~~~~----~~~tv~e~l~~ 89 (125)
+|.+++|+|+||+|||||+|+|.|...+..|+|.. .|...+...........+|+.+.|.+. ..++..+...+
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 242 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHY 242 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHH
Confidence 58899999999999999999999999999999975 233322211111112357888777655 45676665554
Q ss_pred H
Q psy340 90 F 90 (125)
Q Consensus 90 ~ 90 (125)
+
T Consensus 243 f 243 (298)
T PRK00098 243 F 243 (298)
T ss_pred H
Confidence 3
No 405
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.88 E-value=3.1e-09 Score=83.63 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=64.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-CCceeEEEcC---ccCCCCCC---CcCCCeEEEE-----ccCc--ccCCCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR-LNTGEIWVLG---GKPGTKGS---GVPGKRVGYM-----PQEI--ALYGEF 81 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~-~~~G~i~~~g---~~~~~~~~---~~~~~~ig~v-----~Q~~--~~~~~~ 81 (125)
.+|+.++|+|+||||||||+++|+++.+ .+.|.|.+.| .++..... .....+.+++ +|++ .+.+.+
T Consensus 162 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~p~~rlnp~~ 241 (442)
T PRK06315 162 ARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAY 241 (442)
T ss_pred cCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCCHHHHhhHHH
Confidence 7899999999999999999999999884 3446666644 33321100 0012334555 8876 334444
Q ss_pred CHHHHHHHHHHHhCCC---hHHHHHHHHHHHHhCCCC
Q psy340 82 SIKETMMYFGWIFGME---TPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 82 tv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~~~L~ 115 (125)
+...++-+.+.++.. ..+...++.++++.++|.
T Consensus 242 -va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 242 -VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred -HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 555555554444432 256678899999999993
No 406
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.87 E-value=5.8e-09 Score=72.43 Aligned_cols=66 Identities=20% Similarity=0.135 Sum_probs=42.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEE-----------cCccCCCCCCC-----cCCCeEEEEccCcccCCCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWV-----------LGGKPGTKGSG-----VPGKRVGYMPQEIALYGEF 81 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~-----------~g~~~~~~~~~-----~~~~~ig~v~Q~~~~~~~~ 81 (125)
|++++|+||||||||||+++|+..+.+. |.+.+ +|.+....... .....++.++|....+...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI 79 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence 6789999999999999999999987654 54444 22221111100 1123577888877666666
Q ss_pred CHH
Q psy340 82 SIK 84 (125)
Q Consensus 82 tv~ 84 (125)
++.
T Consensus 80 ~~~ 82 (179)
T TIGR02322 80 PAE 82 (179)
T ss_pred hHH
Confidence 653
No 407
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.84 E-value=3.1e-09 Score=75.21 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=26.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
++|++++|+||||||||||+++|++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
No 408
>KOG2355|consensus
Probab=98.79 E-value=1.6e-08 Score=72.63 Aligned_cols=46 Identities=33% Similarity=0.442 Sum_probs=39.7
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCC
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT 58 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~ 58 (125)
=.++.|..+-+||.|||||||||++++|-.-.-.|.|.+.|.+...
T Consensus 35 ldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFh 80 (291)
T KOG2355|consen 35 LDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFH 80 (291)
T ss_pred eccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccc
Confidence 3569999999999999999999999999766666999999877543
No 409
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.77 E-value=7.7e-09 Score=83.79 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=50.3
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
-++||.||||||||||+++|++.+ |..|.|.+||.... .+.+.+.+|++..++..++.+++..
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~~-------~~~i~~nfD~P~a~D~d~L~enL~~ 128 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYNDS-------SRIIDGNFDDPRLTDYDTLLDNIHD 128 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceecc-------hhhhCccCCChhhcchhHHHHHHHH
Confidence 499999999999999999999997 56899999876321 1235678888888877788888753
No 410
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.76 E-value=9.6e-09 Score=60.12 Aligned_cols=30 Identities=33% Similarity=0.337 Sum_probs=25.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCc
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNT 46 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~ 46 (125)
.|+++.|.||||||||||+.+|.=++-+..
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 467999999999999999999988765544
No 411
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.75 E-value=2.1e-08 Score=79.09 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=46.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccC---CC-----CCCCcCCCeEEEEccC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP---GT-----KGSGVPGKRVGYMPQE 74 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~---~~-----~~~~~~~~~ig~v~Q~ 74 (125)
.+|++++|+|+||+|||||+++|+++..++.|.|.+.|+.- .. ......++.+.|+.+.
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 88999999999999999999999999999999999865432 21 1112245678988764
No 412
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.74 E-value=8.1e-08 Score=72.53 Aligned_cols=73 Identities=16% Similarity=0.069 Sum_probs=49.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc-ccCCCCCHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI-ALYGEFSIKETMMYFG 91 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~-~~~~~~tv~e~l~~~~ 91 (125)
..|+.++|+||+|||||||+++|++.+++..+.+.+++. ...... ....+.++.+.. .-....+..+.+....
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~--~El~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDT--REIFLP-HPNYVHLFYSKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCc--cccCCC-CCCEEEEEecCCCCCcCccCHHHHHHHHh
Confidence 579999999999999999999999999999998888532 111111 123455554432 1244567777776543
No 413
>KOG0066|consensus
Probab=98.71 E-value=2.1e-08 Score=78.99 Aligned_cols=82 Identities=28% Similarity=0.424 Sum_probs=57.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc--ccCCCCCHHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI--ALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~ 93 (125)
.=...+|||||||.||||||+.|.|-+.|..|+..- ..+-+||+..|+. .+-...|..|++.- .
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK-----------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr---~ 676 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK-----------NHRLRIGWFDQHANEALNGEETPVEYLQR---K 676 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcCCCCCcchhhc-----------cceeeeechhhhhHHhhccccCHHHHHHH---h
Confidence 335679999999999999999999999999988743 2345799999885 45556667776642 3
Q ss_pred hCCChHHHHHHHHHHHHhCCCC
Q psy340 94 FGMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~ 115 (125)
+.++..+ +...|-.+||.
T Consensus 677 FNlpyq~----ARK~LG~fGL~ 694 (807)
T KOG0066|consen 677 FNLPYQE----ARKQLGTFGLA 694 (807)
T ss_pred cCCChHH----HHHHhhhhhhh
Confidence 3444333 33455556653
No 414
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.68 E-value=5.9e-09 Score=71.95 Aligned_cols=64 Identities=13% Similarity=0.063 Sum_probs=44.9
Q ss_pred ECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 24 LGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 24 iG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
+|+|||||||++++|++.+ |.+.+++..... .....+...|+.+|+....+.+++.++..+...
T Consensus 1 ~G~sGsGKSTla~~la~~l----~~~~~~~d~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 64 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP-RRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQ 64 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh----CCeEEeCccCCc-hhhhccccCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 6999999999999999987 567887743321 111223346888888666677778888776543
No 415
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.66 E-value=1.5e-08 Score=73.15 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=26.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcC--CceeEEE
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRL--NTGEIWV 51 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~--~~G~i~~ 51 (125)
++||.||||||||||.++|.+.+.+ .++.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999999864 4555554
No 416
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.66 E-value=1.6e-08 Score=71.78 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
.+|++++|+|||||||||||++|++
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 6789999999999999999999994
No 417
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.65 E-value=1.6e-08 Score=73.90 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=29.9
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEc
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVL 52 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~ 52 (125)
.+++|+|||||||||||.+|++...+..|++...
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~ 56 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSK 56 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCccccccc
Confidence 4999999999999999999999988777777544
No 418
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.65 E-value=2.6e-08 Score=70.70 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=22.2
Q ss_pred CCCc-EEEEECCCCCCHHHHHHHHh
Q psy340 16 KKKK-KYGLLGASGCGKTTLLSCIV 39 (125)
Q Consensus 16 ~~Ge-~~~liG~nGsGKSTLL~~i~ 39 (125)
.+|+ +++|+|||||||||||++|+
T Consensus 25 ~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 25 GENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred CCCceEEEEECCCCCChHHHHHHHH
Confidence 6674 89999999999999999999
No 419
>PRK08149 ATP synthase SpaL; Validated
Probab=98.64 E-value=2e-08 Score=78.77 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=47.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCc---eeEEEcCccCCCC----CCCcCCCeEEEEccCcc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNT---GEIWVLGGKPGTK----GSGVPGKRVGYMPQEIA 76 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~---G~i~~~g~~~~~~----~~~~~~~~ig~v~Q~~~ 76 (125)
.+|++++|+|+||+|||||+++|+++..++. |.|-.++.++... ......+++++|+....
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 7899999999999999999999999998886 8888888765421 11122357888876543
No 420
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.63 E-value=4.8e-08 Score=77.07 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=47.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCc---eeEEEcCccCCCC---CCCcCCCeEEEEccCcc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNT---GEIWVLGGKPGTK---GSGVPGKRVGYMPQEIA 76 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~---G~i~~~g~~~~~~---~~~~~~~~ig~v~Q~~~ 76 (125)
.+|++++|+|+||+|||||+++|+++..++. |.|-+.|.++... ......+..++|+|...
T Consensus 173 ~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 173 GRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred cCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 7899999999999999999999999999885 8888888765321 11112346788887653
No 421
>PLN02796 D-glycerate 3-kinase
Probab=98.63 E-value=3.1e-08 Score=75.76 Aligned_cols=41 Identities=24% Similarity=0.287 Sum_probs=34.1
Q ss_pred CCCcE-----EEEECCCCCCHHHHHHHHhCCCcCC---ceeEEEcCccC
Q psy340 16 KKKKK-----YGLLGASGCGKTTLLSCIVGRRRLN---TGEIWVLGGKP 56 (125)
Q Consensus 16 ~~Ge~-----~~liG~nGsGKSTLL~~i~g~~~~~---~G~i~~~g~~~ 56 (125)
.+|+. +||+|+||||||||+++|.+++.+. .|.|.++|...
T Consensus 93 ~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 93 KDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred ccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 35665 9999999999999999999998764 57888887543
No 422
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.62 E-value=2e-08 Score=71.20 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=43.3
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCC-ceeEEEcCccCCCCCCCcCCCeEEEEccCc
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLN-TGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~ 75 (125)
+..+++++++|+|+||||||||.+.|.+.+.+. .|.+.+++.++... ....++|.+|+.
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~----~~~~~~~~~~~~ 78 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG----LCSDLGFSDADR 78 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh----hhhcCCcCcccH
Confidence 334889999999999999999999999977553 46788887554321 112367777664
No 423
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.60 E-value=1e-07 Score=73.46 Aligned_cols=59 Identities=19% Similarity=0.106 Sum_probs=38.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcC--Cce-eEEEcCccCCCCCCCcCCCeEEEEccCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL--NTG-EIWVLGGKPGTKGSGVPGKRVGYMPQEI 75 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~--~~G-~i~~~g~~~~~~~~~~~~~~ig~v~Q~~ 75 (125)
+++..++|+||+||||||+|++|++.+.+ ..+ .|...+.++. ..........+++.|..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE-~~~~~~~~~~~~v~Q~~ 193 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE-FVYDEIETISASVCQSE 193 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce-Eeccccccccceeeeee
Confidence 46889999999999999999999998743 333 5544333332 21112223356777753
No 424
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=8e-08 Score=84.31 Aligned_cols=38 Identities=32% Similarity=0.517 Sum_probs=32.4
Q ss_pred cEEEEECCCCCCHHHHHHHH----hCCCcCC-ceeEEEcCccC
Q psy340 19 KKYGLLGASGCGKTTLLSCI----VGRRRLN-TGEIWVLGGKP 56 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i----~g~~~~~-~G~i~~~g~~~ 56 (125)
.+++|+|||||||||++.+| .|..+|. .|.+++++..+
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~ 71 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKV 71 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCc
Confidence 49999999999999999999 5999886 68888876443
No 425
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.58 E-value=9.1e-08 Score=65.40 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=32.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC----CcCCce----eEEEcCcc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGR----RRLNTG----EIWVLGGK 55 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~----~~~~~G----~i~~~g~~ 55 (125)
.+.-.++|+|++|||||||++.+.+. ..|+.| .+.++|..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~ 59 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFK 59 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEE
Confidence 33456999999999999999999997 457777 67766543
No 426
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.57 E-value=5.8e-08 Score=72.28 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=28.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCceeEEEc
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVL 52 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~ 52 (125)
++||+|+||||||||+++|++++++..+.+...
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~ 33 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICL 33 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEEC
Confidence 589999999999999999999998887766543
No 427
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.55 E-value=1.2e-07 Score=72.27 Aligned_cols=39 Identities=31% Similarity=0.511 Sum_probs=35.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG 54 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~ 54 (125)
.+|++++|+|+||+|||||+++|++...++.|.+..-|+
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe 105 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE 105 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence 789999999999999999999999999999888876554
No 428
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.55 E-value=7.7e-08 Score=66.70 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=24.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
|++++|+||||||||||++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999753
No 429
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.54 E-value=1.3e-07 Score=74.38 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=46.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCC---C---CCCcCCCeEEEEccCcccCCCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT---K---GSGVPGKRVGYMPQEIALYGEF 81 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~---~---~~~~~~~~ig~v~Q~~~~~~~~ 81 (125)
.+|++++|+|+||+|||||+++|++...++.|.+...|+.-.. . .........+++++....++.+
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~ 214 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSL 214 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHH
Confidence 7899999999999999999999999999999988775543211 0 0000112356677666555554
No 430
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.54 E-value=5.1e-08 Score=68.79 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
++||+||||||||||.++|.+++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 431
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.53 E-value=3.3e-08 Score=70.42 Aligned_cols=55 Identities=24% Similarity=0.267 Sum_probs=35.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~ 75 (125)
.++|+||+|||||||++.+.+.+.+..+ +.+...+........+....++++|+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~ 57 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPER 57 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCc
Confidence 6899999999999999999999877655 433333433221111123456666654
No 432
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.52 E-value=6.5e-08 Score=75.62 Aligned_cols=36 Identities=42% Similarity=0.619 Sum_probs=33.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC--------CcCCceeEEE
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGR--------RRLNTGEIWV 51 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~--------~~~~~G~i~~ 51 (125)
++|++++|+|+|||||||+|++|+|. ++|++|.|.+
T Consensus 407 kpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~v 450 (593)
T COG2401 407 KPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEV 450 (593)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceec
Confidence 89999999999999999999999995 4788898876
No 433
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.52 E-value=1.4e-07 Score=73.99 Aligned_cols=39 Identities=28% Similarity=0.468 Sum_probs=36.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG 54 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~ 54 (125)
.+|++++|+|+||+|||||+++|++...|+.|.|.+.|+
T Consensus 138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGe 176 (418)
T TIGR03498 138 CRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGE 176 (418)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEee
Confidence 889999999999999999999999999999999887775
No 434
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.51 E-value=1.2e-07 Score=65.59 Aligned_cols=34 Identities=41% Similarity=0.613 Sum_probs=25.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEE
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIW 50 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~ 50 (125)
++++++++|+||+|||||+|.|.+-.....|+|.
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is 67 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS 67 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence 4589999999999999999999998777677775
No 435
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.50 E-value=1.2e-07 Score=71.09 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=40.0
Q ss_pred ccchhhhhcccc--CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCc
Q psy340 4 NTNTKKKKKKKK--KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG 54 (125)
Q Consensus 4 ~~~~~~~~~~~~--~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~ 54 (125)
|++.+..-|+++ ..+.+++|+|++||||||||+.+.+.+....+.+.+.|.
T Consensus 88 n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD 140 (290)
T PRK10463 88 NNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGD 140 (290)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCC
Confidence 445555556666 669999999999999999999999987776666666553
No 436
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.50 E-value=1.7e-07 Score=73.79 Aligned_cols=39 Identities=23% Similarity=0.499 Sum_probs=36.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG 54 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~ 54 (125)
.+|++++|+|+||+|||||+++|+++..++.|.+.+.|+
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGe 191 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE 191 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECC
Confidence 789999999999999999999999999999998877664
No 437
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.49 E-value=2.5e-07 Score=65.71 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=35.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCc---cCCCCCCCcCCCeEEEEccCcccCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG---KPGTKGSGVPGKRVGYMPQEIALYG 79 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~---~~~~~~~~~~~~~ig~v~Q~~~~~~ 79 (125)
.+| +.+|+||||||||||+.+|.-....... ....+. +..... .....|.+++|...+++
T Consensus 20 ~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~ 82 (198)
T cd03276 20 GPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA 82 (198)
T ss_pred CCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCC--CCeEEEEEEEEcCCccC
Confidence 444 8899999999999999999754322211 011121 111111 11346888888765554
No 438
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.48 E-value=2.4e-07 Score=73.08 Aligned_cols=39 Identities=21% Similarity=0.457 Sum_probs=36.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG 54 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~ 54 (125)
.+|++++|+|+||+|||||+++|++...++.|.|.+.|+
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGe 199 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGE 199 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEcc
Confidence 789999999999999999999999999999999988774
No 439
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.48 E-value=1.2e-07 Score=68.35 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=38.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc-CCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRR-LNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
.++++|+|||||||||+|++|++..- ...|.. +. .....++++.| +++.+++.+++..
T Consensus 30 ~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~------vp-----~~~~~i~~~~~---i~~~~~~~~~ls~ 88 (216)
T cd03284 30 RQILLITGPNMAGKSTYLRQVALIALLAQIGSF------VP-----ASKAEIGVVDR---IFTRIGASDDLAG 88 (216)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHhccCCe------ec-----cccceecceee---EeccCCchhhhcc
Confidence 38999999999999999999987532 122221 11 01245677654 4567777776653
No 440
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.48 E-value=1.6e-07 Score=67.45 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=26.3
Q ss_pred cEEEEECCCCCCHHHHHHHHhC--CCcCCceeEEE
Q psy340 19 KKYGLLGASGCGKTTLLSCIVG--RRRLNTGEIWV 51 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g--~~~~~~G~i~~ 51 (125)
.+++|.||||+||||||+.|.. .+ ++.|.+..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~ 63 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVP 63 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeE
Confidence 7899999999999999999984 33 56676654
No 441
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.45 E-value=3.1e-07 Score=72.52 Aligned_cols=39 Identities=31% Similarity=0.521 Sum_probs=35.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG 54 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~ 54 (125)
.+|++++|+|+||+|||||+++|++...++.|.+...|.
T Consensus 161 ~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~ 199 (440)
T TIGR01026 161 GKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGE 199 (440)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEee
Confidence 789999999999999999999999999999887766554
No 442
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.44 E-value=2.5e-07 Score=67.23 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=41.8
Q ss_pred cccchhhhhccccCCCcEEEEECCCCCCHHHH-HHHHhCCCcCCceeEEEcC
Q psy340 3 TNTNTKKKKKKKKKKKKKYGLLGASGCGKTTL-LSCIVGRRRLNTGEIWVLG 53 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~Ge~~~liG~nGsGKSTL-L~~i~g~~~~~~G~i~~~g 53 (125)
.++++.+.-.+.+++|+++.|+|+|||||||| ++++++..++....+++..
T Consensus 9 ~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 9 SRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred EEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 35677777788899999999999999999999 6899988766555666643
No 443
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.44 E-value=1.5e-06 Score=61.68 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcC-CceeEEEcCccC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRL-NTGEIWVLGGKP 56 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~-~~G~i~~~g~~~ 56 (125)
++.|.||+||||||+++++.+.+.+ ..|.|...+.++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 6899999999999999999988764 467776655443
No 444
>PRK05922 type III secretion system ATPase; Validated
Probab=98.43 E-value=3.6e-07 Score=71.92 Aligned_cols=39 Identities=28% Similarity=0.484 Sum_probs=35.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG 54 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~ 54 (125)
.+|+.++|+|+||+|||||+++|++..+++.|.+..-|+
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGe 193 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGE 193 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCC
Confidence 789999999999999999999999999999998865553
No 445
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.43 E-value=2.4e-07 Score=65.90 Aligned_cols=26 Identities=42% Similarity=0.505 Sum_probs=24.5
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
++.+++|.|+||||||||.+.|++.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999999987
No 446
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.43 E-value=2.8e-07 Score=81.37 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=33.7
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCcc
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~ 55 (125)
.+++|+|+|||||||+|++|++++.|..|.+.|++.+
T Consensus 28 ~~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~ 64 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (1486)
T ss_pred CeEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence 4999999999999999999999999999999888653
No 447
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.42 E-value=1.3e-07 Score=65.70 Aligned_cols=34 Identities=35% Similarity=0.439 Sum_probs=29.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHh---CCCcCCceeEEE
Q psy340 18 KKKYGLLGASGCGKTTLLSCIV---GRRRLNTGEIWV 51 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~---g~~~~~~G~i~~ 51 (125)
..+++|+||+||||||+++.|+ |+..++.|++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~ 39 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLR 39 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHH
Confidence 4689999999999999999999 888787877654
No 448
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.41 E-value=2.5e-07 Score=65.41 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=28.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCceeEEEc
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVL 52 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~ 52 (125)
.++|+|+||+|||||+++|.|...+.+|.+...
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~ 35 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTG 35 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccC
Confidence 379999999999999999999887777766553
No 449
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.39 E-value=3.1e-07 Score=72.00 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=32.3
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCC---ceeEEEcCcc
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRRLN---TGEIWVLGGK 55 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~~~---~G~i~~~g~~ 55 (125)
=++||.|++|||||||++.|.+++.+. .|.|.+||..
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 689999999999999999999988665 7888888744
No 450
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.39 E-value=3.6e-06 Score=75.43 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=21.1
Q ss_pred cCCCcEEEEECCCCCCHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLS 36 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~ 36 (125)
++.||+++|.|+||||||||++
T Consensus 618 Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 618 LPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred EcCCcEEEEEcCCCCCHHHHHH
Confidence 4899999999999999999999
No 451
>KOG0927|consensus
Probab=98.39 E-value=2.8e-07 Score=73.74 Aligned_cols=34 Identities=38% Similarity=0.745 Sum_probs=30.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeE
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI 49 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i 49 (125)
..|+.+||+|+|||||||+|++|.|-..|..-.+
T Consensus 99 ~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~ 132 (614)
T KOG0927|consen 99 NRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI 132 (614)
T ss_pred cCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc
Confidence 7899999999999999999999999887754433
No 452
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.39 E-value=3e-07 Score=72.18 Aligned_cols=26 Identities=35% Similarity=0.610 Sum_probs=24.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.+|++++|+||||+||||++..|++.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999999985
No 453
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.38 E-value=6.1e-07 Score=70.36 Aligned_cols=40 Identities=30% Similarity=0.538 Sum_probs=37.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCcc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~ 55 (125)
.+|++++|+|+||+|||||+++|++...++.|.|.+.|+.
T Consensus 135 ~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger 174 (413)
T TIGR03497 135 GKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGER 174 (413)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccc
Confidence 7899999999999999999999999999999988877754
No 454
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.37 E-value=2.5e-07 Score=61.50 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q psy340 21 YGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 21 ~~liG~nGsGKSTLL~~i~g~ 41 (125)
++|+|++|||||||++.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999997
No 455
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.36 E-value=6.4e-07 Score=70.21 Aligned_cols=39 Identities=23% Similarity=0.448 Sum_probs=35.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG 54 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~ 54 (125)
.+|++++|+|+||+|||||+++|++...++.+.+...|+
T Consensus 135 ~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGe 173 (411)
T TIGR03496 135 GRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGE 173 (411)
T ss_pred ecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEec
Confidence 789999999999999999999999999998887765554
No 456
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.36 E-value=5.3e-07 Score=72.26 Aligned_cols=41 Identities=27% Similarity=0.175 Sum_probs=37.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~ 56 (125)
..|+.++|+||||+|||||+++|.|+++|.+|++.++...+
T Consensus 208 ~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 208 AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 77999999999999999999999999999999998876544
No 457
>KOG0062|consensus
Probab=98.35 E-value=2.2e-07 Score=73.92 Aligned_cols=27 Identities=41% Similarity=0.794 Sum_probs=24.8
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhC
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
++..|-.+||+|+||+|||||||+|+.
T Consensus 102 ~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 102 TLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeecccccceeCCCCCcHHHHHHHHHh
Confidence 347789999999999999999999998
No 458
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.35 E-value=7.7e-07 Score=70.09 Aligned_cols=40 Identities=30% Similarity=0.495 Sum_probs=37.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCcc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~ 55 (125)
.+|+.++|+|+||+|||||+++|++..+++.|.|.+.|+.
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer 193 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER 193 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC
Confidence 7899999999999999999999999999999999877654
No 459
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.35 E-value=2.7e-07 Score=66.82 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=31.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhC-CCcCCceeEEE
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVG-RRRLNTGEIWV 51 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g-~~~~~~G~i~~ 51 (125)
.+|++++|+||||+||||++++|++ .+.++.|...+
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 6799999999999999999999999 56778887655
No 460
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.35 E-value=4.5e-07 Score=60.82 Aligned_cols=39 Identities=26% Similarity=0.175 Sum_probs=33.9
Q ss_pred chhhhhccccCCCcEEEEECCCCCCHHHHHHHHhCCCcC
Q psy340 6 NTKKKKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRL 44 (125)
Q Consensus 6 ~~~~~~~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~ 44 (125)
++.++.-+.+++|++++|.|+.|||||||.+.++..+..
T Consensus 10 ~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 10 KFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 456667777899999999999999999999999998754
No 461
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.35 E-value=4.3e-07 Score=71.67 Aligned_cols=34 Identities=35% Similarity=0.595 Sum_probs=31.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeE
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI 49 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i 49 (125)
.+|+++||+||||-||||.+++|+|.+.|.=|+.
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNLG~~ 131 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRY 131 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC
Confidence 7899999999999999999999999998876554
No 462
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.35 E-value=3.1e-07 Score=65.71 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=23.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.+|++++|+||||+||||++++|+++
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999999854
No 463
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.33 E-value=4.2e-07 Score=62.93 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEE-EcC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIW-VLG 53 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~-~~g 53 (125)
++|++++|+|++||||||+.+.|++.+.+..+.+. +++
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 57999999999999999999999999876555665 554
No 464
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.33 E-value=8.2e-07 Score=69.96 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=36.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCcc
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~ 55 (125)
+.+|++++|+|+||+|||||+++|++...++.+.|...|+.
T Consensus 154 i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGer 194 (434)
T PRK08472 154 CGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGER 194 (434)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCcc
Confidence 37899999999999999999999999988888988877754
No 465
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.33 E-value=5.4e-07 Score=62.96 Aligned_cols=35 Identities=29% Similarity=0.200 Sum_probs=29.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCc---eeEEEcCc
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRLNT---GEIWVLGG 54 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~~~---G~i~~~g~ 54 (125)
+++|+|++|||||||++.|...+.+.. |.|...+.
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 899999999999999999999876533 88887554
No 466
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.32 E-value=1.2e-06 Score=56.45 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=29.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCc-eeEEEcC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNT-GEIWVLG 53 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~-G~i~~~g 53 (125)
.+..+.|+||+|+||||+++.|+....... +-+.++.
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~ 38 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG 38 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECC
Confidence 367899999999999999999999987654 4555543
No 467
>KOG0062|consensus
Probab=98.30 E-value=1e-06 Score=70.23 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=61.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
+.-+.++++|+||+||||+++++.+...|..|.+.+. .+.+|+|.+|+-.-+..+.|.+.-.+...+.+
T Consensus 388 e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~-----------~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG 456 (582)
T KOG0062|consen 388 ESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH-----------PRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPG 456 (582)
T ss_pred chhhhhheeccCchhHHHHHHHHhccCCcccceeeec-----------ccceecchhHhhhhHHHHHhHHHHHHHHhCCC
Confidence 4556789999999999999999999999999988763 35689999998643434444443333333334
Q ss_pred CChHHHHHHHHHHHHhCCCCc
Q psy340 96 METPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~ 116 (125)
.+ .+.++..+..|||+.
T Consensus 457 ~~----~ee~r~hl~~~Gl~g 473 (582)
T KOG0062|consen 457 KT----EEEIRRHLGSFGLSG 473 (582)
T ss_pred CC----HHHHHHHHHhcCCCc
Confidence 43 344566788889864
No 468
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.30 E-value=8.8e-07 Score=75.98 Aligned_cols=55 Identities=18% Similarity=0.420 Sum_probs=35.7
Q ss_pred CcEEEEECCCCCCHHHHHHH---HhCCCcC------CceeEEEcCccCCCCCCCcCCCeEEEEccCc
Q psy340 18 KKKYGLLGASGCGKTTLLSC---IVGRRRL------NTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~---i~g~~~~------~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~ 75 (125)
+.+++|+|||||||||||.+ ++|...+ ..+++.+.|..... ......|.++|+++
T Consensus 23 ~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~---~~~~~~v~~~~~~~ 86 (1179)
T TIGR02168 23 KGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRK---PLSLAEVELVFDNS 86 (1179)
T ss_pred CCcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccC---CCCeeEEEEEEecC
Confidence 44999999999999999955 6665442 23666666543211 11224677888753
No 469
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.28 E-value=1.2e-06 Score=62.46 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHH-HHHhCCCcC
Q psy340 20 KYGLLGASGCGKTTLL-SCIVGRRRL 44 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL-~~i~g~~~~ 44 (125)
.++|+|+||||||||+ +++.|...+
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~ 36 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEK 36 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 5899999999999999 688887643
No 470
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.28 E-value=5.1e-07 Score=60.49 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=23.4
Q ss_pred EEEECCCCCCHHHHHHHHh--CCCcCCcee
Q psy340 21 YGLLGASGCGKTTLLSCIV--GRRRLNTGE 48 (125)
Q Consensus 21 ~~liG~nGsGKSTLL~~i~--g~~~~~~G~ 48 (125)
++|+|++|||||||++.|+ +...+.++.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~ 31 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKT 31 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCC
Confidence 6899999999999999999 555555554
No 471
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.27 E-value=1.6e-06 Score=60.26 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=28.2
Q ss_pred EEEEECCCCCCHHHHHHHHhC--------CCcCCceeEEEcCc
Q psy340 20 KYGLLGASGCGKTTLLSCIVG--------RRRLNTGEIWVLGG 54 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g--------~~~~~~G~i~~~g~ 54 (125)
.++|+|++|||||||++.+.+ ...+..+.+.+++.
T Consensus 21 ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~ 63 (190)
T cd00879 21 KILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNI 63 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCE
Confidence 359999999999999999998 34556677777653
No 472
>PLN02165 adenylate isopentenyltransferase
Probab=98.26 E-value=1e-06 Score=67.28 Aligned_cols=43 Identities=30% Similarity=0.315 Sum_probs=35.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc---CCceeE-EEcCccCCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR---LNTGEI-WVLGGKPGT 58 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~---~~~G~i-~~~g~~~~~ 58 (125)
.+|.+++|+||+|||||||...|++.+. .+.+++ .+.|.++..
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgT 87 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITT 87 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCccccc
Confidence 5688999999999999999999999865 446666 467777654
No 473
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.24 E-value=1e-06 Score=61.01 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=33.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-CCceeEEEcCcc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR-LNTGEIWVLGGK 55 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~-~~~G~i~~~g~~ 55 (125)
++|.++.|.|++||||||+.+.|...+. +..|.+.+++..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 5788999999999999999999998764 456777786643
No 474
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.23 E-value=1.1e-06 Score=58.94 Aligned_cols=26 Identities=38% Similarity=0.429 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRLN 45 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~~ 45 (125)
+++|+||+|||||||++.|+...++.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 47899999999999999999987543
No 475
>PRK07429 phosphoribulokinase; Provisional
Probab=98.23 E-value=1.4e-06 Score=66.43 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=28.1
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCceeEE
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRRLNTGEIW 50 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~ 50 (125)
=++||.|+||||||||.+.|++++.+..+.+.
T Consensus 9 ~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi 40 (327)
T PRK07429 9 VLLGVAGDSGCGKTTFLRGLADLLGEELVTVI 40 (327)
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhccCceEEE
Confidence 38999999999999999999999988766543
No 476
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.23 E-value=1.1e-06 Score=64.36 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=26.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCceeEEE
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR--RRLNTGEIWV 51 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~--~~~~~G~i~~ 51 (125)
.++++|++||||||+|++|+|. .+..+|.++-
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~ 61 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 61 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCcccc
Confidence 5899999999999999999998 5555676653
No 477
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.23 E-value=1.2e-06 Score=69.15 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=28.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN 45 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~ 45 (125)
.+|++++|+|+||+|||||+++|++...++
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 789999999999999999999999987774
No 478
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.22 E-value=1.3e-06 Score=59.96 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=26.3
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCceeE
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI 49 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i 49 (125)
++.+.+|+|||||||||++++|....-...+.+
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~ 52 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSAT 52 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhh
Confidence 346999999999999999999877665554443
No 479
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.21 E-value=1.6e-06 Score=68.53 Aligned_cols=30 Identities=23% Similarity=0.497 Sum_probs=28.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN 45 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~ 45 (125)
.+|++++|+|+||+|||||+++|+++..++
T Consensus 166 ~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 166 GRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 789999999999999999999999998776
No 480
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.20 E-value=2e-06 Score=69.04 Aligned_cols=41 Identities=27% Similarity=0.213 Sum_probs=36.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~ 56 (125)
..|+.+.|+||||+|||||+++|.++++|.+|++.++...+
T Consensus 209 ~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i 249 (499)
T TIGR00368 209 AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARI 249 (499)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecccc
Confidence 56899999999999999999999999999999988876544
No 481
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=98.19 E-value=2.5e-06 Score=65.48 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=34.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g 53 (125)
..+..+.|.||.|||||||+++|++.++++.+.+.+.+
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd 197 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED 197 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence 56788999999999999999999999999888888764
No 482
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.18 E-value=2.6e-06 Score=62.77 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=28.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNT 46 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~ 46 (125)
.+|+.++|+||+|+|||||++.|.+......
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~ 44 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKNH 44 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccccc
Confidence 6899999999999999999999999886653
No 483
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.18 E-value=1.4e-06 Score=72.57 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=30.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCce--eEEE
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTG--EIWV 51 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G--~i~~ 51 (125)
+.+|++++||||||+||||++..|++.+....| .|.+
T Consensus 182 ~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~l 220 (767)
T PRK14723 182 LAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLAL 220 (767)
T ss_pred cCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEE
Confidence 346899999999999999999999998765555 4544
No 484
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.17 E-value=1.5e-06 Score=56.26 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+++|.|++||||||+.+.|+-.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998864
No 485
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.17 E-value=1.1e-06 Score=63.34 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=27.0
Q ss_pred EEEEECCCCCCHHHHHHHHh---CCCcCCceeEE
Q psy340 20 KYGLLGASGCGKTTLLSCIV---GRRRLNTGEIW 50 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~---g~~~~~~G~i~ 50 (125)
+++|.||+||||||+++.|+ |+..+++|.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~ 37 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMY 37 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCchHH
Confidence 68999999999999999999 55557888774
No 486
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.16 E-value=8.3e-06 Score=62.51 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=31.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-CCceeEEEcCcc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR-LNTGEIWVLGGK 55 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~-~~~G~i~~~g~~ 55 (125)
.++..+.|.||+||||||+++++.+.+. +..+.|...+.+
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp 160 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP 160 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence 3578999999999999999999999765 446777665443
No 487
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.15 E-value=1.4e-06 Score=60.84 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=34.1
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCc-eeEEEcCccC
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNT-GEIWVLGGKP 56 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~-G~i~~~g~~~ 56 (125)
...+|++++|.|++||||||+.+.|.+.+.... +.+.+++.++
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 447899999999999999999999999875333 2467766543
No 488
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.15 E-value=3.2e-06 Score=61.46 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=27.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCc-----------CCceeEEEcC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRR-----------LNTGEIWVLG 53 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~-----------~~~G~i~~~g 53 (125)
.++|+|++|||||||++.|+|... |..|.+.++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~ 46 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG 46 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC
Confidence 578999999999999999999753 3456665554
No 489
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.14 E-value=2.1e-06 Score=62.91 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=30.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEE
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWV 51 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~ 51 (125)
.+.+++++|+||+|||||+|.|.+......|+|.-
T Consensus 119 ~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~ 153 (245)
T TIGR00157 119 QNRISVFAGQSGVGKSSLINALDPSVKQQVNDISS 153 (245)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhhhhhccccceec
Confidence 35699999999999999999999988888888863
No 490
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.13 E-value=1.5e-06 Score=58.14 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=29.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCc
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG 54 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~ 54 (125)
++.|.||||+||||++..+++...+..+.+.+.+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 47899999999999999999988777787776543
No 491
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.11 E-value=2.3e-06 Score=59.51 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=21.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.+| +.+|+||||+||||++.+|.-.+
T Consensus 18 ~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 18 SPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp -SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 444 99999999999999999887643
No 492
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.10 E-value=3.3e-06 Score=60.26 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
..+.+++|+||||||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46889999999999999999999754
No 493
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.09 E-value=6.4e-07 Score=63.14 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=0.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+.+|+|+|||||||+|++|..+.
T Consensus 1 i~viiG~N~sGKS~il~ai~~~~ 23 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIYFLF 23 (303)
T ss_dssp -----------------------
T ss_pred CCccccccccccccccccccccc
Confidence 46899999999999999998764
No 494
>PRK06820 type III secretion system ATPase; Validated
Probab=98.09 E-value=5.8e-06 Score=65.33 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=32.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g 53 (125)
.+||.++|+|+||+|||||+++|++...++.+-+-.-|
T Consensus 161 ~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iG 198 (440)
T PRK06820 161 GEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIG 198 (440)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEc
Confidence 78999999999999999999999999988875443334
No 495
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.09 E-value=2.7e-06 Score=58.07 Aligned_cols=31 Identities=32% Similarity=0.654 Sum_probs=24.9
Q ss_pred EEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCcc
Q psy340 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55 (125)
Q Consensus 21 ~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~ 55 (125)
++|+||+||||||+.+.|.+.+ |.+.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l----~~~~v~~D~ 31 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL----GAKFIEGDD 31 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc----CCeEEeCcc
Confidence 4689999999999999999886 345566544
No 496
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.09 E-value=2.8e-06 Score=54.84 Aligned_cols=21 Identities=29% Similarity=0.729 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q psy340 21 YGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 21 ~~liG~nGsGKSTLL~~i~g~ 41 (125)
++|+|+.|+|||||++.|++.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999985
No 497
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.08 E-value=2.2e-06 Score=64.45 Aligned_cols=35 Identities=40% Similarity=0.492 Sum_probs=31.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEE
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIW 50 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~ 50 (125)
-+|.+.+++|+||.|||||+|.|.+-.....|+|.
T Consensus 162 l~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS 196 (301)
T COG1162 162 LAGKITVLLGQSGVGKSTLINALLPELNQKTGEIS 196 (301)
T ss_pred hcCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhc
Confidence 45779999999999999999999998777788885
No 498
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.07 E-value=5.8e-06 Score=58.70 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=25.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC-cCCceeEE
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR-RLNTGEIW 50 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~-~~~~G~i~ 50 (125)
.+||+|++|+|||||+++|++.. ....+++.
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~ 33 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELE 33 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEE
Confidence 47999999999999999999983 34455554
No 499
>PRK12288 GTPase RsgA; Reviewed
Probab=98.07 E-value=2.6e-06 Score=65.50 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=29.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCceeEE
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIW 50 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~ 50 (125)
+.+++|+|+||+|||||+|.|.+-.....|+|.
T Consensus 205 ~ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is 237 (347)
T PRK12288 205 GRISIFVGQSGVGKSSLINALLPEAEILVGDVS 237 (347)
T ss_pred hCCEEEECCCCCCHHHHHHHhccccceeecccc
Confidence 457999999999999999999998877777774
No 500
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.06 E-value=4e-06 Score=59.06 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=22.1
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
=.++|+|++|||||||++.+++..
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcch
Confidence 489999999999999999999964
Done!