Query psy340
Match_columns 125
No_of_seqs 161 out of 1237
Neff 8.4
Searched_HMMs 29240
Date Sat Aug 17 00:03:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlf_A Maltose/maltodextrin im 100.0 7.2E-29 2.5E-33 190.0 12.3 121 2-124 4-134 (381)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 2.6E-29 8.8E-34 191.3 8.4 123 2-124 5-139 (359)
3 2it1_A 362AA long hypothetical 100.0 3.7E-28 1.3E-32 185.1 13.1 121 2-124 4-134 (362)
4 1z47_A CYSA, putative ABC-tran 100.0 2.7E-28 9.2E-33 185.5 11.9 121 2-124 15-146 (355)
5 3tui_C Methionine import ATP-b 100.0 1.2E-28 4.2E-33 187.8 9.7 124 1-124 24-164 (366)
6 2pcj_A ABC transporter, lipopr 100.0 2.3E-28 7.8E-33 175.4 9.0 123 2-124 5-141 (224)
7 2yyz_A Sugar ABC transporter, 100.0 2E-28 6.8E-33 186.5 8.4 121 2-124 4-134 (359)
8 1g29_1 MALK, maltose transport 99.9 3.7E-28 1.3E-32 185.7 9.7 121 2-124 4-140 (372)
9 3tif_A Uncharacterized ABC tra 99.9 5.3E-28 1.8E-32 174.6 9.6 124 1-124 1-146 (235)
10 1vpl_A ABC transporter, ATP-bi 99.9 5.3E-28 1.8E-32 176.7 9.6 122 2-124 16-147 (256)
11 2olj_A Amino acid ABC transpor 99.9 6.1E-28 2.1E-32 177.0 9.4 124 1-124 24-160 (263)
12 1v43_A Sugar-binding transport 99.9 4.5E-28 1.6E-32 185.2 9.0 121 2-124 12-142 (372)
13 1oxx_K GLCV, glucose, ABC tran 99.9 3.7E-28 1.3E-32 184.7 8.2 123 2-124 4-141 (353)
14 3gfo_A Cobalt import ATP-bindi 99.9 5.8E-28 2E-32 178.2 6.6 123 2-124 8-144 (275)
15 3d31_A Sulfate/molybdate ABC t 99.9 1.9E-27 6.5E-32 180.4 9.2 119 1-124 1-128 (348)
16 1b0u_A Histidine permease; ABC 99.9 3.2E-27 1.1E-31 173.0 9.0 124 1-124 6-154 (262)
17 1g6h_A High-affinity branched- 99.9 2.1E-27 7.3E-32 173.4 5.4 123 2-124 8-154 (257)
18 4g1u_C Hemin import ATP-bindin 99.9 2.8E-27 9.4E-32 173.8 5.9 121 2-124 12-142 (266)
19 1sgw_A Putative ABC transporte 99.9 1.2E-26 4E-31 165.7 8.9 116 2-124 11-134 (214)
20 2onk_A Molybdate/tungstate ABC 99.9 8.6E-27 2.9E-31 168.9 7.6 119 1-124 1-127 (240)
21 1ji0_A ABC transporter; ATP bi 99.9 6.4E-27 2.2E-31 169.4 4.5 122 2-124 7-140 (240)
22 2yz2_A Putative ABC transporte 99.9 3.2E-26 1.1E-30 168.0 6.3 120 1-124 2-139 (266)
23 2ihy_A ABC transporter, ATP-bi 99.9 3E-26 1E-30 169.3 5.7 123 2-124 22-162 (279)
24 2qi9_C Vitamin B12 import ATP- 99.9 1.1E-25 3.8E-30 163.8 5.1 117 2-124 5-127 (249)
25 2d2e_A SUFC protein; ABC-ATPas 99.9 2.4E-25 8.3E-30 161.9 4.8 122 2-123 4-142 (250)
26 2nq2_C Hypothetical ABC transp 99.9 3E-24 1E-28 156.5 9.4 110 2-124 5-129 (253)
27 1mv5_A LMRA, multidrug resista 99.9 1.1E-24 3.6E-29 157.9 5.4 110 1-116 1-120 (243)
28 2pjz_A Hypothetical protein ST 99.9 4.1E-24 1.4E-28 156.7 8.3 113 1-124 1-129 (263)
29 2zu0_C Probable ATP-dependent 99.9 3.8E-24 1.3E-28 157.1 8.0 122 1-122 20-162 (267)
30 2ixe_A Antigen peptide transpo 99.9 6.3E-25 2.2E-29 161.5 3.4 121 2-124 17-157 (271)
31 2ff7_A Alpha-hemolysin translo 99.9 5.2E-24 1.8E-28 154.8 3.9 93 16-115 33-125 (247)
32 3nh6_A ATP-binding cassette SU 99.9 1.4E-23 4.9E-28 156.8 3.0 75 15-90 77-151 (306)
33 3gd7_A Fusion complex of cysti 99.9 4E-23 1.4E-27 158.7 4.3 100 15-123 44-144 (390)
34 2ghi_A Transport protein; mult 99.9 8.4E-23 2.9E-27 149.3 4.8 91 16-114 44-134 (260)
35 3b5x_A Lipid A export ATP-bind 99.8 4.7E-22 1.6E-26 159.1 5.0 95 16-116 367-461 (582)
36 2pze_A Cystic fibrosis transme 99.8 1.9E-21 6.4E-26 139.7 7.2 75 2-90 7-92 (229)
37 3b60_A Lipid A export ATP-bind 99.8 4.5E-22 1.5E-26 159.1 3.9 95 16-116 367-461 (582)
38 2yl4_A ATP-binding cassette SU 99.8 5.1E-22 1.8E-26 159.2 2.9 96 16-115 368-463 (595)
39 2cbz_A Multidrug resistance-as 99.8 4.8E-21 1.6E-25 138.3 6.0 75 2-90 4-89 (237)
40 4a82_A Cystic fibrosis transme 99.8 1.1E-21 3.7E-26 156.9 2.8 75 15-90 364-438 (578)
41 3qf4_B Uncharacterized ABC tra 99.8 1.7E-21 5.9E-26 156.3 1.7 75 15-90 378-452 (598)
42 2bbs_A Cystic fibrosis transme 99.8 2.9E-20 1E-24 137.9 6.8 73 2-88 41-120 (290)
43 3qf4_A ABC transporter, ATP-bi 99.8 4.6E-21 1.6E-25 153.6 2.1 75 15-90 366-440 (587)
44 4f4c_A Multidrug resistance pr 99.8 7.2E-20 2.5E-24 157.3 2.7 96 15-115 1102-1197(1321)
45 3bk7_A ABC transporter ATP-bin 99.8 8.9E-19 3E-23 140.9 8.2 93 15-124 379-472 (607)
46 3g5u_A MCG1178, multidrug resi 99.8 2.8E-19 9.6E-24 153.4 5.1 74 16-90 414-487 (1284)
47 4f4c_A Multidrug resistance pr 99.8 3.5E-19 1.2E-23 153.1 4.3 94 15-115 441-534 (1321)
48 3g5u_A MCG1178, multidrug resi 99.7 6E-19 2.1E-23 151.3 5.6 74 16-90 1057-1130(1284)
49 1yqt_A RNAse L inhibitor; ATP- 99.7 2E-18 7E-23 137.2 7.8 91 16-124 310-402 (538)
50 3ozx_A RNAse L inhibitor; ATP 99.7 3.4E-18 1.2E-22 135.9 6.9 95 15-124 291-386 (538)
51 1u0l_A Probable GTPase ENGC; p 99.7 3.7E-19 1.3E-23 132.2 1.2 104 16-123 167-291 (301)
52 1htw_A HI0065; nucleotide-bind 99.7 1.1E-18 3.9E-23 119.0 0.6 67 16-89 31-97 (158)
53 1znw_A Guanylate kinase, GMP k 99.7 6E-20 2.1E-24 129.3 -9.0 71 14-88 16-86 (207)
54 2yv5_A YJEQ protein; hydrolase 99.7 9.5E-18 3.3E-22 124.7 1.8 106 16-123 163-287 (302)
55 3sop_A Neuronal-specific septi 99.6 6.3E-18 2.1E-22 124.1 -1.2 69 20-91 4-72 (270)
56 1yqt_A RNAse L inhibitor; ATP- 99.6 2.2E-17 7.5E-22 131.3 0.5 102 14-124 43-159 (538)
57 3j16_B RLI1P; ribosome recycli 99.6 5.4E-16 1.8E-20 124.8 8.2 95 13-124 373-468 (608)
58 3bk7_A ABC transporter ATP-bin 99.6 2.3E-17 7.8E-22 132.8 -0.4 101 15-124 114-229 (607)
59 3b9q_A Chloroplast SRP recepto 99.6 3.4E-17 1.2E-21 121.9 -1.0 77 15-91 97-180 (302)
60 1rj9_A FTSY, signal recognitio 99.6 1.2E-16 4.2E-21 119.1 1.8 76 16-91 100-181 (304)
61 2npi_A Protein CLP1; CLP1-PCF1 99.6 6.3E-17 2.1E-21 126.6 -1.3 76 3-87 120-203 (460)
62 3ozx_A RNAse L inhibitor; ATP 99.6 1.3E-16 4.6E-21 126.8 0.5 100 16-124 23-139 (538)
63 1t9h_A YLOQ, probable GTPase E 99.6 3E-16 1E-20 117.2 1.3 101 14-116 169-287 (307)
64 2rcn_A Probable GTPase ENGC; Y 99.6 5.4E-16 1.9E-20 117.9 2.7 92 16-116 213-306 (358)
65 1s96_A Guanylate kinase, GMP k 99.6 1.1E-17 3.8E-22 119.5 -7.1 65 15-83 13-79 (219)
66 2og2_A Putative signal recogni 99.6 1.8E-16 6.2E-21 120.6 -0.8 77 15-91 154-237 (359)
67 3aez_A Pantothenate kinase; tr 99.6 2.7E-16 9.1E-21 117.6 0.0 80 15-113 87-166 (312)
68 3b85_A Phosphate starvation-in 99.6 7.8E-17 2.7E-21 114.3 -2.7 57 15-75 19-75 (208)
69 2gza_A Type IV secretion syste 99.5 1.5E-14 5.1E-19 109.9 8.4 77 14-92 171-250 (361)
70 2dpy_A FLII, flagellum-specifi 99.5 5.7E-16 2E-20 120.5 -0.7 78 15-92 154-240 (438)
71 3e70_C DPA, signal recognition 99.5 1E-15 3.5E-20 115.2 0.5 76 16-91 127-208 (328)
72 2yhs_A FTSY, cell division pro 99.5 6.5E-16 2.2E-20 121.6 -1.0 77 15-91 290-372 (503)
73 3tr0_A Guanylate kinase, GMP k 99.5 7.3E-17 2.5E-21 112.3 -6.2 68 16-87 5-72 (205)
74 3ux8_A Excinuclease ABC, A sub 99.5 6.9E-15 2.4E-19 119.2 4.2 105 15-124 41-203 (670)
75 1z6g_A Guanylate kinase; struc 99.5 1.8E-15 6.3E-20 107.4 0.6 62 15-80 20-82 (218)
76 2iw3_A Elongation factor 3A; a 99.5 1.3E-14 4.3E-19 121.7 5.5 64 15-89 696-763 (986)
77 3szr_A Interferon-induced GTP- 99.5 2.2E-15 7.6E-20 121.2 0.1 72 20-91 47-122 (608)
78 1zp6_A Hypothetical protein AT 99.5 5.9E-15 2E-19 101.7 1.2 70 15-90 6-75 (191)
79 3j16_B RLI1P; ribosome recycli 99.5 2.2E-15 7.4E-20 121.3 -1.6 35 15-49 100-134 (608)
80 2iw3_A Elongation factor 3A; a 99.5 5.5E-14 1.9E-18 117.9 5.9 89 15-124 458-549 (986)
81 1sq5_A Pantothenate kinase; P- 99.4 1.7E-14 5.7E-19 107.3 1.3 74 16-94 78-156 (308)
82 2jeo_A Uridine-cytidine kinase 99.4 3.4E-14 1.2E-18 102.2 2.7 63 14-91 21-83 (245)
83 3asz_A Uridine kinase; cytidin 99.4 6.9E-14 2.4E-18 97.8 3.5 75 16-115 4-80 (211)
84 1tq4_A IIGP1, interferon-induc 99.4 1.6E-14 5.5E-19 111.6 -0.8 60 20-89 71-130 (413)
85 4a74_A DNA repair and recombin 99.4 2.4E-15 8.4E-20 105.9 -5.2 72 11-89 18-96 (231)
86 2i3b_A HCR-ntpase, human cance 99.4 3.3E-14 1.1E-18 99.3 -0.1 54 18-75 1-54 (189)
87 2qm8_A GTPase/ATPase; G protei 99.4 4.7E-14 1.6E-18 106.3 0.2 66 14-79 51-120 (337)
88 2pt7_A CAG-ALFA; ATPase, prote 99.4 8E-13 2.7E-17 99.3 6.7 70 14-90 167-236 (330)
89 3euj_A Chromosome partition pr 99.3 3.4E-13 1.1E-17 106.0 3.1 43 15-58 27-69 (483)
90 2qag_B Septin-6, protein NEDD5 99.3 5.5E-14 1.9E-18 109.0 -1.4 72 11-90 33-106 (427)
91 1qhl_A Protein (cell division 99.3 2.5E-14 8.5E-19 102.7 -3.2 56 19-74 28-91 (227)
92 2v9p_A Replication protein E1; 99.3 1.4E-13 4.6E-18 102.7 -0.4 37 12-51 120-156 (305)
93 2eyu_A Twitching motility prot 99.3 4.1E-13 1.4E-17 98.0 2.0 55 15-73 22-77 (261)
94 1tf7_A KAIC; homohexamer, hexa 99.3 4.7E-14 1.6E-18 111.5 -4.2 62 14-76 35-98 (525)
95 1p9r_A General secretion pathw 99.3 7.5E-13 2.6E-17 102.4 2.3 75 16-90 165-258 (418)
96 2bdt_A BH3686; alpha-beta prot 99.3 2E-13 6.8E-18 94.1 -1.2 65 18-91 2-66 (189)
97 3c8u_A Fructokinase; YP_612366 99.3 1.8E-12 6.2E-17 90.9 2.7 47 10-56 14-63 (208)
98 2bbw_A Adenylate kinase 4, AK4 99.2 8.2E-14 2.8E-18 100.0 -5.1 70 17-90 26-98 (246)
99 2ewv_A Twitching motility prot 99.2 3.3E-12 1.1E-16 97.3 2.6 55 15-73 133-188 (372)
100 2ehv_A Hypothetical protein PH 99.2 5.5E-12 1.9E-16 89.6 3.5 66 9-75 21-88 (251)
101 2obl_A ESCN; ATPase, hydrolase 99.2 6.4E-12 2.2E-16 95.1 4.0 60 16-75 69-135 (347)
102 4eun_A Thermoresistant glucoki 99.2 2.2E-13 7.6E-18 95.0 -3.8 71 16-91 27-97 (200)
103 1ye8_A Protein THEP1, hypothet 99.2 1.1E-12 3.7E-17 90.7 -0.4 51 20-75 2-52 (178)
104 3ux8_A Excinuclease ABC, A sub 99.2 4E-12 1.4E-16 103.0 1.2 25 15-39 345-369 (670)
105 4e22_A Cytidylate kinase; P-lo 99.2 1.1E-12 3.8E-17 94.8 -2.3 59 16-74 25-95 (252)
106 2oap_1 GSPE-2, type II secreti 99.2 8.7E-11 3E-15 92.9 8.3 40 16-55 258-297 (511)
107 2f1r_A Molybdopterin-guanine d 99.2 6.4E-13 2.2E-17 91.5 -3.7 60 19-78 3-73 (171)
108 3a00_A Guanylate kinase, GMP k 99.1 1.2E-11 4.2E-16 85.3 2.3 30 18-47 1-30 (186)
109 4aby_A DNA repair protein RECN 99.1 4.4E-12 1.5E-16 96.9 -0.2 64 15-79 58-160 (415)
110 1lvg_A Guanylate kinase, GMP k 99.1 1.1E-11 3.9E-16 86.5 1.9 28 16-43 2-29 (198)
111 4gp7_A Metallophosphoesterase; 99.1 1.3E-11 4.3E-16 84.4 2.0 38 14-51 5-54 (171)
112 1nij_A Hypothetical protein YJ 99.1 6.3E-13 2.2E-17 99.2 -5.8 70 19-88 5-100 (318)
113 1lw7_A Transcriptional regulat 99.1 1.5E-12 5E-17 98.7 -4.1 39 14-52 164-208 (365)
114 3jvv_A Twitching mobility prot 99.1 4.4E-11 1.5E-15 90.8 3.4 70 16-89 121-191 (356)
115 2qnr_A Septin-2, protein NEDD5 99.1 6E-12 2E-16 93.4 -1.7 66 20-89 20-86 (301)
116 2qag_C Septin-7; cell cycle, c 99.1 9E-12 3.1E-16 96.4 -0.8 86 2-91 12-100 (418)
117 3lnc_A Guanylate kinase, GMP k 99.1 3.3E-11 1.1E-15 85.5 2.1 33 12-44 21-54 (231)
118 1pzn_A RAD51, DNA repair and r 99.1 4.4E-12 1.5E-16 95.9 -3.1 69 12-87 125-200 (349)
119 1in4_A RUVB, holliday junction 99.1 3.6E-12 1.2E-16 95.5 -3.7 69 19-89 52-124 (334)
120 2x8a_A Nuclear valosin-contain 99.0 3.9E-12 1.3E-16 93.2 -5.7 57 14-74 42-98 (274)
121 1kgd_A CASK, peripheral plasma 99.0 1.9E-10 6.5E-15 78.9 2.6 36 16-51 3-39 (180)
122 2j41_A Guanylate kinase; GMP, 99.0 3.9E-10 1.3E-14 78.0 4.1 33 15-47 3-35 (207)
123 3kta_A Chromosome segregation 99.0 1.5E-10 5.2E-15 79.0 1.9 34 15-49 24-57 (182)
124 1cr0_A DNA primase/helicase; R 99.0 1.6E-10 5.6E-15 84.7 2.2 42 13-54 30-72 (296)
125 3uie_A Adenylyl-sulfate kinase 98.9 8.5E-11 2.9E-15 81.8 0.1 41 16-57 23-65 (200)
126 2vf7_A UVRA2, excinuclease ABC 98.9 2.1E-10 7.1E-15 95.3 2.3 28 14-41 519-547 (842)
127 2vp4_A Deoxynucleoside kinase; 98.9 4E-10 1.4E-14 80.1 3.1 39 14-56 16-54 (230)
128 2w0m_A SSO2452; RECA, SSPF, un 98.9 2.2E-10 7.6E-15 80.2 1.5 44 12-55 17-60 (235)
129 1pui_A ENGB, probable GTP-bind 98.9 3.3E-10 1.1E-14 78.5 1.7 50 2-51 4-64 (210)
130 1rz3_A Hypothetical protein rb 98.9 3.6E-10 1.2E-14 78.8 1.8 42 14-55 18-59 (201)
131 1n0w_A DNA repair protein RAD5 98.9 1.5E-09 5.1E-14 76.7 5.0 47 9-55 15-68 (243)
132 2r6f_A Excinuclease ABC subuni 98.9 5.7E-10 2E-14 93.5 2.8 26 14-39 646-671 (972)
133 1ewq_A DNA mismatch repair pro 98.9 1.1E-10 3.8E-15 96.1 -1.6 58 18-89 576-634 (765)
134 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 2.3E-09 7.9E-14 82.3 5.1 41 13-53 15-67 (392)
135 1zu4_A FTSY; GTPase, signal re 98.8 4.5E-10 1.5E-14 84.1 0.7 76 15-90 102-187 (320)
136 1oix_A RAS-related protein RAB 98.8 1.9E-09 6.6E-14 74.1 3.7 36 20-55 31-77 (191)
137 3tau_A Guanylate kinase, GMP k 98.8 2.5E-09 8.7E-14 74.9 4.2 34 16-49 6-40 (208)
138 1e69_A Chromosome segregation 98.8 1.4E-10 4.6E-15 86.5 -2.5 26 15-41 22-47 (322)
139 1knq_A Gluconate kinase; ALFA/ 98.8 1.3E-09 4.6E-14 73.8 2.6 37 16-56 6-42 (175)
140 3ney_A 55 kDa erythrocyte memb 98.8 1.9E-09 6.3E-14 75.8 3.3 34 10-43 11-44 (197)
141 2kjq_A DNAA-related protein; s 98.8 1.5E-09 5.1E-14 72.8 2.6 40 17-57 35-76 (149)
142 1iy2_A ATP-dependent metallopr 98.8 2.9E-11 9.9E-16 88.1 -6.4 71 15-89 72-143 (278)
143 1ixz_A ATP-dependent metallopr 98.8 4.4E-11 1.5E-15 85.8 -5.9 71 15-89 48-119 (254)
144 3cr8_A Sulfate adenylyltranfer 98.8 9.7E-10 3.3E-14 87.7 1.3 43 14-56 365-409 (552)
145 2ygr_A Uvrabc system protein A 98.8 1.8E-09 6E-14 90.8 1.9 26 14-39 664-689 (993)
146 3pih_A Uvrabc system protein A 98.7 1.8E-08 6.3E-13 84.3 6.8 21 15-35 607-627 (916)
147 2www_A Methylmalonic aciduria 98.7 4.3E-09 1.5E-13 79.5 2.6 42 16-57 72-113 (349)
148 3tqc_A Pantothenate kinase; bi 98.7 4.5E-09 1.5E-13 78.8 2.4 32 20-51 94-127 (321)
149 3ec2_A DNA replication protein 98.7 2.3E-09 7.8E-14 73.1 0.3 33 15-47 35-67 (180)
150 2qt1_A Nicotinamide riboside k 98.7 2.2E-08 7.6E-13 69.5 5.3 29 15-43 18-46 (207)
151 2f9l_A RAB11B, member RAS onco 98.7 9E-09 3.1E-13 70.9 3.2 36 20-55 7-53 (199)
152 1vma_A Cell division protein F 98.7 6.4E-09 2.2E-13 77.4 2.4 42 16-57 102-143 (306)
153 2cvh_A DNA repair and recombin 98.6 2.2E-08 7.6E-13 69.6 4.3 46 7-54 9-54 (220)
154 1sxj_E Activator 1 40 kDa subu 98.6 8.1E-09 2.8E-13 76.9 1.9 53 21-75 39-92 (354)
155 1kag_A SKI, shikimate kinase I 98.6 1.2E-08 4E-13 68.8 2.4 28 17-44 3-30 (173)
156 3lda_A DNA repair protein RAD5 98.6 2.7E-08 9.3E-13 76.5 4.7 43 13-55 173-222 (400)
157 1mky_A Probable GTP-binding pr 98.6 3.7E-08 1.3E-12 76.1 5.3 37 19-55 181-229 (439)
158 1w1w_A Structural maintenance 98.6 1.6E-08 5.5E-13 77.9 3.1 32 15-46 23-54 (430)
159 2px0_A Flagellar biosynthesis 98.6 1.2E-08 4.1E-13 75.5 2.0 41 16-56 103-144 (296)
160 1odf_A YGR205W, hypothetical 3 98.6 1.1E-08 3.6E-13 75.6 1.4 60 14-90 27-86 (290)
161 1tf7_A KAIC; homohexamer, hexa 98.6 1.8E-08 6.2E-13 79.6 2.6 42 12-54 275-318 (525)
162 1udx_A The GTP-binding protein 98.5 3.2E-08 1.1E-12 76.5 3.1 28 15-42 154-181 (416)
163 1ls1_A Signal recognition part 98.5 2.5E-08 8.5E-13 73.7 2.4 41 17-57 97-137 (295)
164 3m6a_A ATP-dependent protease 98.5 2.4E-08 8.3E-13 79.3 2.4 38 17-54 107-144 (543)
165 1cke_A CK, MSSA, protein (cyti 98.5 1.1E-08 3.7E-13 71.8 -0.1 34 18-51 5-41 (227)
166 1wb9_A DNA mismatch repair pro 98.5 4.3E-08 1.5E-12 81.2 3.3 27 16-42 605-631 (800)
167 2pez_A Bifunctional 3'-phospho 98.5 2.6E-08 8.9E-13 67.7 1.7 40 16-56 3-44 (179)
168 1nlf_A Regulatory protein REPA 98.5 3.7E-08 1.3E-12 71.7 2.4 34 14-49 26-59 (279)
169 3k1j_A LON protease, ATP-depen 98.5 1.9E-07 6.7E-12 74.8 6.7 55 15-74 57-112 (604)
170 2o5v_A DNA replication and rep 98.5 6.3E-08 2.1E-12 73.5 3.4 25 15-40 24-48 (359)
171 3hr8_A Protein RECA; alpha and 98.5 1.4E-08 4.6E-13 77.2 -0.3 74 13-89 56-130 (356)
172 3thx_A DNA mismatch repair pro 98.5 9.9E-08 3.4E-12 80.1 4.7 32 16-47 660-699 (934)
173 3thx_B DNA mismatch repair pro 98.4 6.6E-08 2.2E-12 81.0 2.2 26 16-41 671-696 (918)
174 2qtf_A Protein HFLX, GTP-bindi 98.4 2E-07 6.7E-12 70.8 4.5 41 14-54 174-226 (364)
175 3qf7_A RAD50; ABC-ATPase, ATPa 98.4 1.2E-07 4.2E-12 71.8 3.3 24 15-39 21-44 (365)
176 1m7g_A Adenylylsulfate kinase; 98.4 5.2E-08 1.8E-12 68.1 1.1 43 13-55 20-64 (211)
177 2yvu_A Probable adenylyl-sulfa 98.4 1.1E-07 3.8E-12 64.9 2.6 41 13-53 8-49 (186)
178 2p67_A LAO/AO transport system 98.4 1.1E-07 3.7E-12 71.4 2.5 43 14-56 52-94 (341)
179 2o8b_B DNA mismatch repair pro 98.4 1.2E-07 4.3E-12 80.2 2.3 25 18-43 789-813 (1022)
180 2ohf_A Protein OLA1, GTP-bindi 98.3 3.9E-07 1.3E-11 70.0 4.8 42 12-53 16-68 (396)
181 1svm_A Large T antigen; AAA+ f 98.3 2.4E-07 8.2E-12 70.8 3.4 36 13-51 164-199 (377)
182 2dr3_A UPF0273 protein PH0284; 98.3 3E-07 1E-11 64.8 3.6 47 7-53 12-59 (247)
183 1jjv_A Dephospho-COA kinase; P 98.3 3.1E-07 1.1E-11 63.5 3.4 22 20-41 4-25 (206)
184 2gj8_A MNME, tRNA modification 98.3 5.9E-07 2E-11 60.5 4.7 26 17-42 3-28 (172)
185 1f2t_A RAD50 ABC-ATPase; DNA d 98.3 3.6E-07 1.2E-11 61.0 3.6 22 19-40 24-45 (149)
186 3vaa_A Shikimate kinase, SK; s 98.3 4.1E-07 1.4E-11 62.9 3.7 28 15-42 22-49 (199)
187 2qor_A Guanylate kinase; phosp 98.3 5E-07 1.7E-11 62.7 3.3 28 15-42 9-36 (204)
188 2if2_A Dephospho-COA kinase; a 98.2 5.1E-07 1.7E-11 62.3 2.6 21 20-40 3-23 (204)
189 2wjg_A FEOB, ferrous iron tran 98.2 1.2E-06 4E-11 59.1 4.2 22 20-41 9-30 (188)
190 4ad8_A DNA repair protein RECN 98.2 1.5E-07 5.2E-12 74.2 -0.5 26 15-41 58-83 (517)
191 2ffh_A Protein (FFH); SRP54, s 98.2 6.9E-07 2.4E-11 69.2 3.1 42 17-58 97-138 (425)
192 3nwj_A ATSK2; P loop, shikimat 98.2 6.5E-07 2.2E-11 64.8 2.7 25 18-42 48-72 (250)
193 4eaq_A DTMP kinase, thymidylat 98.2 1E-06 3.5E-11 62.7 3.6 37 15-52 23-59 (229)
194 2wji_A Ferrous iron transport 98.2 1.5E-06 5E-11 57.9 4.1 23 20-42 5-27 (165)
195 2dy1_A Elongation factor G; tr 98.2 9.9E-08 3.4E-12 77.5 -2.4 40 15-55 6-47 (665)
196 2zej_A Dardarin, leucine-rich 98.2 1.3E-06 4.6E-11 59.1 3.6 23 20-42 4-26 (184)
197 3qkt_A DNA double-strand break 98.1 1.2E-06 4.1E-11 65.6 3.4 21 19-39 24-44 (339)
198 3qks_A DNA double-strand break 98.1 1.4E-06 4.8E-11 60.8 3.4 21 19-39 24-44 (203)
199 2dhr_A FTSH; AAA+ protein, hex 98.1 3E-07 1E-11 72.5 -0.2 39 15-57 63-101 (499)
200 1np6_A Molybdopterin-guanine d 98.1 1.3E-06 4.5E-11 59.9 2.7 35 19-53 7-44 (174)
201 1j8m_F SRP54, signal recogniti 98.1 8.1E-07 2.8E-11 65.7 1.4 40 18-57 98-137 (297)
202 3cm0_A Adenylate kinase; ATP-b 98.1 2E-06 6.9E-11 58.3 3.1 23 17-39 3-25 (186)
203 3t61_A Gluconokinase; PSI-biol 98.0 2.2E-06 7.7E-11 59.1 2.9 25 18-42 18-42 (202)
204 3lxx_A GTPase IMAP family memb 98.0 4E-06 1.4E-10 59.3 4.1 28 20-47 31-58 (239)
205 3r20_A Cytidylate kinase; stru 98.0 1.2E-06 4.2E-11 62.8 1.2 32 18-49 9-43 (233)
206 1ega_A Protein (GTP-binding pr 98.0 3.1E-06 1.1E-10 62.4 3.4 25 18-42 8-32 (301)
207 1q3t_A Cytidylate kinase; nucl 98.0 4.5E-06 1.5E-10 59.1 3.8 25 16-40 14-38 (236)
208 3kb2_A SPBC2 prophage-derived 98.0 4E-06 1.4E-10 55.8 3.3 23 20-42 3-25 (173)
209 3t34_A Dynamin-related protein 98.0 3.8E-06 1.3E-10 63.2 3.4 30 20-49 36-67 (360)
210 2p5t_B PEZT; postsegregational 98.0 2.7E-06 9.2E-11 61.0 2.4 41 14-56 28-68 (253)
211 2ius_A DNA translocase FTSK; n 98.0 3E-06 1E-10 67.1 2.9 41 16-56 165-207 (512)
212 1qhx_A CPT, protein (chloramph 97.9 6.3E-06 2.2E-10 55.4 3.6 26 18-43 3-28 (178)
213 1kht_A Adenylate kinase; phosp 97.9 6.3E-06 2.2E-10 55.7 3.6 25 18-42 3-27 (192)
214 3kl4_A SRP54, signal recogniti 97.9 3.2E-06 1.1E-10 65.6 1.9 39 17-55 96-134 (433)
215 1y63_A LMAJ004144AAA protein; 97.9 8.5E-06 2.9E-10 55.6 3.8 27 15-41 7-33 (184)
216 3lw7_A Adenylate kinase relate 97.9 7.3E-06 2.5E-10 54.3 3.3 19 20-38 3-21 (179)
217 1f6b_A SAR1; gtpases, N-termin 97.9 1.3E-05 4.3E-10 55.1 4.5 34 20-53 27-68 (198)
218 1ex7_A Guanylate kinase; subst 97.9 7.3E-06 2.5E-10 56.8 3.1 20 21-40 4-23 (186)
219 2qag_A Septin-2, protein NEDD5 97.9 6.7E-06 2.3E-10 62.2 3.1 27 21-47 40-66 (361)
220 1sxj_C Activator 1 40 kDa subu 97.9 1.5E-06 5.3E-11 64.6 -0.5 34 15-48 41-76 (340)
221 2zr9_A Protein RECA, recombina 97.9 4.2E-06 1.4E-10 63.2 1.8 74 13-89 56-130 (349)
222 2rhm_A Putative kinase; P-loop 97.9 9.6E-06 3.3E-10 55.0 3.4 25 17-41 4-28 (193)
223 1gtv_A TMK, thymidylate kinase 97.9 1.7E-06 5.8E-11 59.8 -0.4 26 20-45 2-27 (214)
224 2ga8_A Hypothetical 39.9 kDa p 97.9 5.6E-06 1.9E-10 62.8 2.4 30 13-42 17-48 (359)
225 2jaq_A Deoxyguanosine kinase; 97.9 9.5E-06 3.2E-10 55.4 3.4 23 20-42 2-24 (205)
226 1vht_A Dephospho-COA kinase; s 97.9 1.1E-05 3.8E-10 56.2 3.7 23 18-40 4-26 (218)
227 4ag6_A VIRB4 ATPase, type IV s 97.8 5.6E-06 1.9E-10 62.8 2.3 37 17-53 34-70 (392)
228 1m2o_B GTP-binding protein SAR 97.8 1.4E-05 4.9E-10 54.4 4.1 34 20-53 25-66 (190)
229 1jal_A YCHF protein; nucleotid 97.8 1.4E-05 4.6E-10 60.8 4.3 36 18-53 2-48 (363)
230 2v54_A DTMP kinase, thymidylat 97.8 1.5E-05 5E-10 54.6 3.9 26 17-42 3-28 (204)
231 3k53_A Ferrous iron transport 97.8 1E-05 3.5E-10 58.4 3.2 24 20-43 5-28 (271)
232 3iij_A Coilin-interacting nucl 97.8 1.3E-05 4.4E-10 54.1 3.3 24 16-39 9-32 (180)
233 3trf_A Shikimate kinase, SK; a 97.8 1.5E-05 5.1E-10 53.9 3.5 23 18-40 5-27 (185)
234 1ly1_A Polynucleotide kinase; 97.8 1.5E-05 5.1E-10 53.4 3.4 22 19-40 3-24 (181)
235 2plr_A DTMP kinase, probable t 97.8 1.7E-05 5.7E-10 54.5 3.7 28 17-44 3-30 (213)
236 1via_A Shikimate kinase; struc 97.8 1.3E-05 4.3E-10 54.0 2.9 22 20-41 6-27 (175)
237 2ze6_A Isopentenyl transferase 97.8 1.5E-05 5.2E-10 57.3 3.4 23 20-42 3-25 (253)
238 3auy_A DNA double-strand break 97.8 1.4E-05 4.6E-10 60.5 3.1 21 19-39 26-46 (371)
239 1gvn_B Zeta; postsegregational 97.8 1.6E-05 5.5E-10 58.3 3.4 36 16-53 31-66 (287)
240 2c95_A Adenylate kinase 1; tra 97.8 1.8E-05 6.3E-10 53.7 3.5 24 17-40 8-31 (196)
241 1uf9_A TT1252 protein; P-loop, 97.8 1.8E-05 6.2E-10 54.1 3.5 24 18-41 8-31 (203)
242 2wwf_A Thymidilate kinase, put 97.7 1.9E-05 6.4E-10 54.4 3.4 25 17-41 9-33 (212)
243 1nn5_A Similar to deoxythymidy 97.7 2.2E-05 7.5E-10 54.1 3.5 26 16-41 7-32 (215)
244 1nks_A Adenylate kinase; therm 97.7 2E-05 6.7E-10 53.3 3.1 23 20-42 3-25 (194)
245 1tev_A UMP-CMP kinase; ploop, 97.7 2.4E-05 8.3E-10 52.9 3.5 23 18-40 3-25 (196)
246 1ypw_A Transitional endoplasmi 97.7 2E-05 6.7E-10 65.3 3.5 30 15-44 235-264 (806)
247 2r6a_A DNAB helicase, replicat 97.7 1.1E-05 3.9E-10 62.5 2.0 41 13-53 198-239 (454)
248 2z0h_A DTMP kinase, thymidylat 97.7 2.4E-05 8.1E-10 53.2 3.3 23 20-42 2-24 (197)
249 2ged_A SR-beta, signal recogni 97.7 2.2E-05 7.4E-10 53.1 2.9 25 19-43 49-73 (193)
250 3b1v_A Ferrous iron uptake tra 97.7 2.7E-05 9.4E-10 56.7 3.5 23 20-42 5-27 (272)
251 3ihw_A Centg3; RAS, centaurin, 97.7 5.4E-05 1.9E-09 51.2 4.8 34 20-53 22-64 (184)
252 1xjc_A MOBB protein homolog; s 97.7 3E-05 1E-09 52.9 3.4 25 19-43 5-29 (169)
253 1lv7_A FTSH; alpha/beta domain 97.7 2.1E-05 7.3E-10 56.0 2.7 34 20-55 47-80 (257)
254 3q72_A GTP-binding protein RAD 97.7 2.4E-05 8E-10 51.4 2.7 23 20-42 4-26 (166)
255 2nzj_A GTP-binding protein REM 97.7 3E-05 1E-09 51.2 3.3 23 20-42 6-28 (175)
256 4fcw_A Chaperone protein CLPB; 97.6 2.2E-05 7.5E-10 57.1 2.8 34 17-50 46-79 (311)
257 2erx_A GTP-binding protein DI- 97.6 3.3E-05 1.1E-09 50.7 3.3 22 20-41 5-26 (172)
258 1fzq_A ADP-ribosylation factor 97.6 2.8E-05 9.7E-10 52.4 2.9 26 17-42 15-40 (181)
259 1v5w_A DMC1, meiotic recombina 97.6 5.3E-05 1.8E-09 56.8 4.7 43 13-55 117-166 (343)
260 3q85_A GTP-binding protein REM 97.6 3.4E-05 1.2E-09 50.7 3.2 23 20-42 4-26 (169)
261 3tw8_B RAS-related protein RAB 97.6 3.2E-05 1.1E-09 51.3 3.1 23 20-42 11-33 (181)
262 3ake_A Cytidylate kinase; CMP 97.6 3.5E-05 1.2E-09 52.8 3.3 22 20-41 4-25 (208)
263 1z2a_A RAS-related protein RAB 97.6 2.7E-05 9.2E-10 51.0 2.6 22 20-41 7-28 (168)
264 2bwj_A Adenylate kinase 5; pho 97.6 3.5E-05 1.2E-09 52.4 3.3 25 17-41 11-35 (199)
265 3lxw_A GTPase IMAP family memb 97.6 3.7E-05 1.3E-09 54.9 3.5 23 20-42 23-45 (247)
266 2e87_A Hypothetical protein PH 97.6 4.7E-05 1.6E-09 57.2 4.2 27 16-42 165-191 (357)
267 1uj2_A Uridine-cytidine kinase 97.6 4.1E-05 1.4E-09 54.6 3.6 24 18-41 22-45 (252)
268 3ice_A Transcription terminati 97.6 3.4E-05 1.2E-09 59.4 3.3 27 16-42 172-198 (422)
269 3fb4_A Adenylate kinase; psych 97.6 4E-05 1.4E-09 53.1 3.3 21 20-40 2-22 (216)
270 1kao_A RAP2A; GTP-binding prot 97.6 3.2E-05 1.1E-09 50.4 2.7 22 20-41 5-26 (167)
271 1aky_A Adenylate kinase; ATP:A 97.6 4.9E-05 1.7E-09 53.0 3.7 25 17-41 3-27 (220)
272 2lkc_A Translation initiation 97.6 5.9E-05 2E-09 50.0 4.0 25 17-41 7-31 (178)
273 1wf3_A GTP-binding protein; GT 97.6 4.1E-05 1.4E-09 56.5 3.4 23 20-42 9-31 (301)
274 2pbr_A DTMP kinase, thymidylat 97.6 4.3E-05 1.5E-09 51.6 3.3 23 20-42 2-24 (195)
275 2vli_A Antibiotic resistance p 97.6 2.8E-05 9.7E-10 52.3 2.3 25 17-41 4-28 (183)
276 1u8z_A RAS-related protein RAL 97.6 3.4E-05 1.2E-09 50.4 2.6 22 20-41 6-27 (168)
277 2ce2_X GTPase HRAS; signaling 97.6 3E-05 1E-09 50.4 2.3 23 20-42 5-27 (166)
278 2dyk_A GTP-binding protein; GT 97.6 3.9E-05 1.3E-09 50.0 2.9 23 20-42 3-25 (161)
279 1svi_A GTP-binding protein YSX 97.6 3.8E-05 1.3E-09 51.8 3.0 25 18-42 23-47 (195)
280 1zd8_A GTP:AMP phosphotransfer 97.6 4.3E-05 1.5E-09 53.5 3.3 24 17-40 6-29 (227)
281 3pqc_A Probable GTP-binding pr 97.6 3.9E-05 1.3E-09 51.5 3.0 23 20-42 25-47 (195)
282 2cdn_A Adenylate kinase; phosp 97.6 5.8E-05 2E-09 51.8 3.8 25 16-40 18-42 (201)
283 1z0j_A RAB-22, RAS-related pro 97.6 3.6E-05 1.2E-09 50.5 2.7 23 20-42 8-30 (170)
284 1z08_A RAS-related protein RAB 97.6 3.7E-05 1.3E-09 50.5 2.7 22 20-41 8-29 (170)
285 3iev_A GTP-binding protein ERA 97.6 4.6E-05 1.6E-09 56.2 3.4 24 19-42 11-34 (308)
286 1ky3_A GTP-binding protein YPT 97.6 3.7E-05 1.3E-09 51.0 2.7 22 20-41 10-31 (182)
287 1wms_A RAB-9, RAB9, RAS-relate 97.6 3.8E-05 1.3E-09 50.9 2.7 22 20-41 9-30 (177)
288 1ek0_A Protein (GTP-binding pr 97.6 5.1E-05 1.7E-09 49.7 3.3 23 20-42 5-27 (170)
289 1zak_A Adenylate kinase; ATP:A 97.6 4.3E-05 1.5E-09 53.3 3.0 24 17-40 4-27 (222)
290 3dl0_A Adenylate kinase; phosp 97.5 5E-05 1.7E-09 52.6 3.3 21 20-40 2-22 (216)
291 1c1y_A RAS-related protein RAP 97.5 3.9E-05 1.3E-09 50.2 2.6 22 20-41 5-26 (167)
292 1e6c_A Shikimate kinase; phosp 97.5 4.5E-05 1.5E-09 50.8 3.0 23 19-41 3-25 (173)
293 1ukz_A Uridylate kinase; trans 97.5 6E-05 2.1E-09 51.7 3.7 24 17-40 14-37 (203)
294 1g16_A RAS-related protein SEC 97.5 3.4E-05 1.2E-09 50.6 2.3 23 20-42 5-27 (170)
295 2cxx_A Probable GTP-binding pr 97.5 5.7E-05 2E-09 50.6 3.4 23 20-42 3-25 (190)
296 3cf0_A Transitional endoplasmi 97.5 5.1E-05 1.8E-09 55.6 3.4 28 15-42 46-73 (301)
297 1qf9_A UMP/CMP kinase, protein 97.5 4.9E-05 1.7E-09 51.2 3.0 23 18-40 6-28 (194)
298 2fn4_A P23, RAS-related protei 97.5 3.8E-05 1.3E-09 50.9 2.4 22 20-41 11-32 (181)
299 2pt5_A Shikimate kinase, SK; a 97.5 6E-05 2.1E-09 50.0 3.4 22 20-41 2-23 (168)
300 1moz_A ARL1, ADP-ribosylation 97.5 3.1E-05 1.1E-09 51.7 2.0 24 17-40 17-40 (183)
301 1fnn_A CDC6P, cell division co 97.5 6.3E-05 2.2E-09 56.0 3.8 36 17-52 41-80 (389)
302 2qby_A CDC6 homolog 1, cell di 97.5 3.2E-05 1.1E-09 57.3 2.1 37 16-52 43-83 (386)
303 1zuh_A Shikimate kinase; alpha 97.5 6.5E-05 2.2E-09 50.1 3.5 22 19-40 8-29 (168)
304 2hxs_A RAB-26, RAS-related pro 97.5 5.5E-05 1.9E-09 50.2 3.1 22 20-41 8-29 (178)
305 4dsu_A GTPase KRAS, isoform 2B 97.5 4.5E-05 1.5E-09 51.0 2.7 22 20-41 6-27 (189)
306 3clv_A RAB5 protein, putative; 97.5 4.5E-05 1.5E-09 51.3 2.7 22 20-41 9-30 (208)
307 3llm_A ATP-dependent RNA helic 97.5 6.7E-05 2.3E-09 52.9 3.6 25 16-40 74-98 (235)
308 3t5d_A Septin-7; GTP-binding p 97.5 4.8E-05 1.7E-09 55.0 2.8 22 20-41 10-31 (274)
309 2oil_A CATX-8, RAS-related pro 97.5 4.8E-05 1.6E-09 51.4 2.7 22 20-41 27-48 (193)
310 3bc1_A RAS-related protein RAB 97.5 4.8E-05 1.6E-09 50.9 2.6 22 20-41 13-34 (195)
311 1r2q_A RAS-related protein RAB 97.5 4.9E-05 1.7E-09 49.8 2.6 22 20-41 8-29 (170)
312 3tlx_A Adenylate kinase 2; str 97.5 7.3E-05 2.5E-09 53.3 3.6 25 16-40 27-51 (243)
313 3t1o_A Gliding protein MGLA; G 97.5 5.2E-05 1.8E-09 51.0 2.7 24 20-43 16-39 (198)
314 1upt_A ARL1, ADP-ribosylation 97.5 5.2E-05 1.8E-09 49.9 2.6 23 19-41 8-30 (171)
315 3iby_A Ferrous iron transport 97.5 6.3E-05 2.2E-09 54.2 3.2 23 20-42 3-25 (256)
316 1r8s_A ADP-ribosylation factor 97.5 5.5E-05 1.9E-09 49.5 2.6 21 20-40 2-22 (164)
317 2iyv_A Shikimate kinase, SK; t 97.5 6.2E-05 2.1E-09 50.8 3.0 22 19-40 3-24 (184)
318 2w58_A DNAI, primosome compone 97.5 5.9E-05 2E-09 51.7 2.8 31 19-49 55-85 (202)
319 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 8.2E-05 2.8E-09 53.5 3.7 25 17-41 3-27 (260)
320 3cbq_A GTP-binding protein REM 97.5 5.8E-05 2E-09 51.6 2.7 22 20-41 25-46 (195)
321 2g6b_A RAS-related protein RAB 97.5 5.8E-05 2E-09 50.1 2.6 23 20-42 12-34 (180)
322 2xtp_A GTPase IMAP family memb 97.5 7E-05 2.4E-09 53.4 3.2 24 19-42 23-46 (260)
323 2a9k_A RAS-related protein RAL 97.5 5.9E-05 2E-09 50.2 2.6 22 20-41 20-41 (187)
324 2dby_A GTP-binding protein; GD 97.5 5.3E-05 1.8E-09 57.6 2.6 22 20-41 3-24 (368)
325 3bos_A Putative DNA replicatio 97.5 9.6E-05 3.3E-09 51.2 3.8 27 17-43 51-77 (242)
326 3con_A GTPase NRAS; structural 97.4 6.1E-05 2.1E-09 50.7 2.6 22 20-41 23-44 (190)
327 2xb4_A Adenylate kinase; ATP-b 97.4 8.1E-05 2.8E-09 52.2 3.4 21 20-40 2-22 (223)
328 1z0f_A RAB14, member RAS oncog 97.4 6.3E-05 2.2E-09 49.7 2.6 23 20-42 17-39 (179)
329 2z43_A DNA repair and recombin 97.4 8.6E-05 2.9E-09 55.1 3.6 43 13-55 102-151 (324)
330 1ksh_A ARF-like protein 2; sma 97.4 8.9E-05 3.1E-09 49.7 3.4 25 18-42 18-42 (186)
331 2y8e_A RAB-protein 6, GH09086P 97.4 7.8E-05 2.7E-09 49.3 3.0 22 20-41 16-37 (179)
332 2grj_A Dephospho-COA kinase; T 97.4 8.8E-05 3E-09 51.4 3.3 24 18-41 12-35 (192)
333 2efe_B Small GTP-binding prote 97.4 6.9E-05 2.4E-09 49.8 2.7 22 20-41 14-35 (181)
334 1nrj_B SR-beta, signal recogni 97.4 7.4E-05 2.5E-09 51.5 2.9 24 19-42 13-36 (218)
335 3cnl_A YLQF, putative uncharac 97.4 9.4E-05 3.2E-09 53.6 3.5 30 19-48 100-129 (262)
336 2bov_A RAla, RAS-related prote 97.4 6.9E-05 2.4E-09 50.9 2.6 22 20-41 16-37 (206)
337 3tkl_A RAS-related protein RAB 97.4 9.4E-05 3.2E-09 49.8 3.3 23 20-42 18-40 (196)
338 3a1s_A Iron(II) transport prot 97.4 9.7E-05 3.3E-09 53.2 3.5 23 20-42 7-29 (258)
339 1jwy_B Dynamin A GTPase domain 97.4 8.2E-05 2.8E-09 54.3 3.2 23 20-42 26-48 (315)
340 2f6r_A COA synthase, bifunctio 97.4 8E-05 2.7E-09 54.3 3.1 23 18-40 75-97 (281)
341 1zbd_A Rabphilin-3A; G protein 97.4 9.3E-05 3.2E-09 50.3 3.2 23 20-42 10-32 (203)
342 1vg8_A RAS-related protein RAB 97.4 7.5E-05 2.6E-09 50.8 2.7 23 20-42 10-32 (207)
343 2bme_A RAB4A, RAS-related prot 97.4 8.9E-05 3.1E-09 49.5 3.0 22 20-41 12-33 (186)
344 2il1_A RAB12; G-protein, GDP, 97.4 8.9E-05 3E-09 50.3 3.0 23 20-42 28-50 (192)
345 3i8s_A Ferrous iron transport 97.4 9.1E-05 3.1E-09 53.7 3.2 23 20-42 5-27 (274)
346 2gf9_A RAS-related protein RAB 97.4 7.6E-05 2.6E-09 50.3 2.6 23 20-42 24-46 (189)
347 2gf0_A GTP-binding protein DI- 97.4 6.9E-05 2.4E-09 50.6 2.4 22 20-41 10-31 (199)
348 2qu8_A Putative nucleolar GTP- 97.4 0.0001 3.6E-09 51.4 3.4 24 19-42 30-53 (228)
349 4bas_A ADP-ribosylation factor 97.4 0.00011 3.6E-09 49.7 3.3 24 19-42 18-41 (199)
350 3kkq_A RAS-related protein M-R 97.4 0.00013 4.3E-09 48.7 3.5 22 20-41 20-41 (183)
351 1mh1_A RAC1; GTP-binding, GTPa 97.4 8.4E-05 2.9E-09 49.5 2.6 22 20-41 7-28 (186)
352 3b9p_A CG5977-PA, isoform A; A 97.4 0.0001 3.5E-09 53.3 3.3 26 17-42 53-78 (297)
353 4dhe_A Probable GTP-binding pr 97.4 4.4E-05 1.5E-09 52.7 1.2 24 19-42 30-53 (223)
354 2fg5_A RAB-22B, RAS-related pr 97.4 7.6E-05 2.6E-09 50.6 2.4 23 20-42 25-47 (192)
355 2h57_A ADP-ribosylation factor 97.4 8.1E-05 2.8E-09 50.2 2.5 24 19-42 22-45 (190)
356 1a7j_A Phosphoribulokinase; tr 97.4 5.3E-05 1.8E-09 55.6 1.6 24 18-41 5-28 (290)
357 1m7b_A RND3/RHOE small GTP-bin 97.4 0.0001 3.5E-09 49.5 3.0 22 20-41 9-30 (184)
358 2o52_A RAS-related protein RAB 97.4 9.9E-05 3.4E-09 50.5 2.9 22 20-41 27-48 (200)
359 1z06_A RAS-related protein RAB 97.4 9.1E-05 3.1E-09 49.9 2.7 22 20-41 22-43 (189)
360 1zj6_A ADP-ribosylation factor 97.4 0.00011 3.9E-09 49.3 3.2 23 19-41 17-39 (187)
361 1ak2_A Adenylate kinase isoenz 97.4 0.00015 5.1E-09 51.1 3.9 26 16-41 14-39 (233)
362 2wsm_A Hydrogenase expression/ 97.4 8.7E-05 3E-09 51.3 2.6 23 19-41 31-53 (221)
363 2cjw_A GTP-binding protein GEM 97.4 0.0001 3.4E-09 50.3 2.9 21 20-40 8-28 (192)
364 3oes_A GTPase rhebl1; small GT 97.4 7.9E-05 2.7E-09 50.8 2.3 23 20-42 26-48 (201)
365 2a5j_A RAS-related protein RAB 97.4 9.4E-05 3.2E-09 50.0 2.7 22 20-41 23-44 (191)
366 2f7s_A C25KG, RAS-related prot 97.4 0.00012 4.2E-09 50.3 3.3 23 20-42 27-49 (217)
367 1e4v_A Adenylate kinase; trans 97.4 0.00011 3.8E-09 51.0 3.0 21 20-40 2-22 (214)
368 4edh_A DTMP kinase, thymidylat 97.3 0.00015 5E-09 51.0 3.6 28 17-44 5-32 (213)
369 3bwd_D RAC-like GTP-binding pr 97.3 0.0001 3.4E-09 49.0 2.6 22 20-41 10-31 (182)
370 1jbk_A CLPB protein; beta barr 97.3 0.00017 5.9E-09 47.9 3.8 26 17-42 42-67 (195)
371 3reg_A RHO-like small GTPase; 97.3 0.0001 3.5E-09 49.9 2.6 24 19-42 24-47 (194)
372 3dz8_A RAS-related protein RAB 97.3 9E-05 3.1E-09 50.1 2.3 23 20-42 25-47 (191)
373 2q3h_A RAS homolog gene family 97.3 0.00013 4.5E-09 49.5 3.2 26 16-41 18-43 (201)
374 1ypw_A Transitional endoplasmi 97.3 4.5E-06 1.5E-10 69.1 -5.0 39 15-55 508-546 (806)
375 3be4_A Adenylate kinase; malar 97.3 0.00012 4.3E-09 50.9 3.1 24 18-41 5-28 (217)
376 3llu_A RAS-related GTP-binding 97.3 0.00013 4.3E-09 49.7 3.1 23 20-42 22-44 (196)
377 3zvl_A Bifunctional polynucleo 97.3 0.00015 5.2E-09 55.7 3.8 26 16-41 256-281 (416)
378 1x3s_A RAS-related protein RAB 97.3 0.00011 3.6E-09 49.4 2.6 22 20-41 17-38 (195)
379 3t5g_A GTP-binding protein RHE 97.3 0.00013 4.4E-09 48.6 3.0 21 20-40 8-28 (181)
380 3cph_A RAS-related protein SEC 97.3 0.0001 3.6E-09 50.3 2.6 26 16-41 18-43 (213)
381 1ltq_A Polynucleotide kinase; 97.3 0.00014 4.7E-09 52.9 3.4 22 19-40 3-24 (301)
382 1zd9_A ADP-ribosylation factor 97.3 0.00011 3.7E-09 49.7 2.6 22 20-41 24-45 (188)
383 2aka_B Dynamin-1; fusion prote 97.3 0.00011 3.9E-09 53.0 2.9 23 20-42 28-50 (299)
384 2h17_A ADP-ribosylation factor 97.3 0.00011 3.8E-09 49.2 2.7 23 19-41 22-44 (181)
385 2ew1_A RAS-related protein RAB 97.3 9.3E-05 3.2E-09 51.0 2.3 22 20-41 28-49 (201)
386 2atv_A RERG, RAS-like estrogen 97.3 0.00011 3.8E-09 49.8 2.7 23 19-41 29-51 (196)
387 2bcg_Y Protein YP2, GTP-bindin 97.3 9.5E-05 3.2E-09 50.5 2.3 22 20-41 10-31 (206)
388 2p5s_A RAS and EF-hand domain 97.3 0.00011 3.9E-09 50.0 2.7 24 19-42 29-52 (199)
389 2j1l_A RHO-related GTP-binding 97.3 0.00013 4.5E-09 50.4 3.0 22 20-41 36-57 (214)
390 3umf_A Adenylate kinase; rossm 97.3 0.0002 6.9E-09 50.6 3.9 28 13-40 24-51 (217)
391 3def_A T7I23.11 protein; chlor 97.3 0.00015 5E-09 52.1 3.2 24 19-42 37-60 (262)
392 1sky_E F1-ATPase, F1-ATP synth 97.3 5.6E-05 1.9E-09 59.3 1.0 35 16-50 149-183 (473)
393 3lv8_A DTMP kinase, thymidylat 97.3 0.00016 5.5E-09 51.7 3.4 27 17-43 26-52 (236)
394 3v9p_A DTMP kinase, thymidylat 97.3 0.00014 4.7E-09 51.8 2.9 28 16-43 23-50 (227)
395 2ce7_A Cell division protein F 97.3 0.00011 3.9E-09 57.5 2.7 22 21-42 52-73 (476)
396 1l8q_A Chromosomal replication 97.3 7.9E-05 2.7E-09 54.8 1.7 26 17-42 36-61 (324)
397 2iwr_A Centaurin gamma 1; ANK 97.3 8.8E-05 3E-09 49.3 1.8 22 20-41 9-30 (178)
398 1h65_A Chloroplast outer envel 97.3 0.00016 5.4E-09 52.1 3.2 23 20-42 41-63 (270)
399 2b6h_A ADP-ribosylation factor 97.3 0.00014 4.7E-09 49.5 2.7 24 18-41 29-52 (192)
400 2fh5_B SR-beta, signal recogni 97.3 0.0002 6.7E-09 49.2 3.6 24 19-42 8-31 (214)
401 2fu5_C RAS-related protein RAB 97.3 8.6E-05 2.9E-09 49.6 1.7 23 20-42 10-32 (183)
402 2fv8_A H6, RHO-related GTP-bin 97.3 0.00012 4E-09 50.3 2.4 23 20-42 27-49 (207)
403 4dcu_A GTP-binding protein ENG 97.3 0.00012 4.2E-09 56.6 2.7 23 20-42 25-47 (456)
404 3c5c_A RAS-like protein 12; GD 97.3 0.00016 5.4E-09 48.9 2.9 22 20-41 23-44 (187)
405 4tmk_A Protein (thymidylate ki 97.3 0.0002 6.7E-09 50.4 3.4 27 17-43 2-28 (213)
406 1gwn_A RHO-related GTP-binding 97.2 0.0002 6.8E-09 49.4 3.2 23 20-42 30-52 (205)
407 3d3q_A TRNA delta(2)-isopenten 97.2 0.00019 6.5E-09 54.1 3.3 25 19-43 8-32 (340)
408 2g3y_A GTP-binding protein GEM 97.2 0.00023 7.9E-09 49.7 3.5 22 20-41 39-60 (211)
409 2h92_A Cytidylate kinase; ross 97.2 0.0002 7E-09 49.5 3.2 24 18-41 3-26 (219)
410 1puj_A YLQF, conserved hypothe 97.2 0.00033 1.1E-08 51.2 4.3 30 16-45 118-147 (282)
411 2gco_A H9, RHO-related GTP-bin 97.2 0.00021 7.1E-09 48.8 3.0 22 20-41 27-48 (201)
412 4djt_A GTP-binding nuclear pro 97.2 7.8E-05 2.7E-09 51.4 0.8 22 20-41 13-34 (218)
413 3tmk_A Thymidylate kinase; pho 97.2 0.00026 8.7E-09 50.0 3.5 33 17-50 4-36 (216)
414 2atx_A Small GTP binding prote 97.2 0.00016 5.5E-09 48.8 2.4 22 20-41 20-41 (194)
415 3ld9_A DTMP kinase, thymidylat 97.2 0.00028 9.6E-09 50.1 3.7 28 16-43 19-46 (223)
416 2ocp_A DGK, deoxyguanosine kin 97.2 0.00024 8.2E-09 50.2 3.4 25 18-42 2-26 (241)
417 2hf9_A Probable hydrogenase ni 97.2 0.00022 7.4E-09 49.4 3.0 24 18-41 38-61 (226)
418 2qmh_A HPR kinase/phosphorylas 97.2 0.00026 8.9E-09 49.7 3.3 26 16-41 32-57 (205)
419 1njg_A DNA polymerase III subu 97.2 0.00027 9.2E-09 48.5 3.3 24 19-42 46-69 (250)
420 3exa_A TRNA delta(2)-isopenten 97.2 0.00029 9.8E-09 52.7 3.6 25 18-42 3-27 (322)
421 2x77_A ADP-ribosylation factor 97.2 0.00014 4.6E-09 49.0 1.7 23 19-41 23-45 (189)
422 2p65_A Hypothetical protein PF 97.1 0.00024 8.3E-09 47.1 2.9 26 17-42 42-67 (187)
423 2yc2_C IFT27, small RAB-relate 97.1 8.5E-05 2.9E-09 50.4 0.5 22 20-41 22-43 (208)
424 3cpj_B GTP-binding protein YPT 97.1 0.00022 7.6E-09 49.5 2.7 23 20-42 15-37 (223)
425 1p5z_B DCK, deoxycytidine kina 97.1 0.00017 5.7E-09 51.7 2.1 27 16-42 22-48 (263)
426 3h4m_A Proteasome-activating n 97.1 0.00036 1.2E-08 50.1 3.9 27 16-42 49-75 (285)
427 3bh0_A DNAB-like replicative h 97.1 0.00036 1.2E-08 51.6 3.9 29 13-41 63-91 (315)
428 2zts_A Putative uncharacterize 97.1 0.00047 1.6E-08 48.2 4.3 34 6-39 18-51 (251)
429 3a8t_A Adenylate isopentenyltr 97.1 0.00034 1.2E-08 52.7 3.7 26 17-42 39-64 (339)
430 2hup_A RAS-related protein RAB 97.1 0.00021 7.1E-09 48.9 2.4 22 20-41 31-52 (201)
431 4hlc_A DTMP kinase, thymidylat 97.1 0.00034 1.2E-08 48.9 3.5 26 18-43 2-27 (205)
432 3crm_A TRNA delta(2)-isopenten 97.1 0.0003 1E-08 52.6 3.4 24 19-42 6-29 (323)
433 3q3j_B RHO-related GTP-binding 97.1 0.00024 8.3E-09 49.1 2.6 26 16-41 25-50 (214)
434 4gzl_A RAS-related C3 botulinu 97.1 0.00026 9E-09 48.5 2.6 22 19-40 31-52 (204)
435 2i1q_A DNA repair and recombin 97.1 0.00033 1.1E-08 51.6 3.3 28 13-40 93-120 (322)
436 2j0v_A RAC-like GTP-binding pr 97.0 0.00037 1.3E-08 47.7 3.0 22 20-41 11-32 (212)
437 1ko7_A HPR kinase/phosphatase; 97.0 0.00046 1.6E-08 51.4 3.7 24 17-40 143-166 (314)
438 3dm5_A SRP54, signal recogniti 97.0 0.00035 1.2E-08 54.4 3.1 35 17-51 99-133 (443)
439 2z4s_A Chromosomal replication 97.0 0.00028 9.5E-09 54.5 2.6 25 18-42 130-154 (440)
440 3sr0_A Adenylate kinase; phosp 97.0 0.00044 1.5E-08 48.4 3.3 22 20-41 2-23 (206)
441 1u94_A RECA protein, recombina 97.0 0.00025 8.6E-09 53.6 2.0 41 13-53 58-99 (356)
442 3geh_A MNME, tRNA modification 97.0 0.0002 6.8E-09 55.9 1.4 28 14-41 220-247 (462)
443 2v3c_C SRP54, signal recogniti 97.0 0.00017 5.9E-09 55.8 1.1 35 19-53 100-134 (432)
444 2hjg_A GTP-binding protein ENG 97.0 0.00038 1.3E-08 53.6 2.8 23 20-42 5-27 (436)
445 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.00066 2.3E-08 47.9 3.9 25 17-41 38-62 (262)
446 1wxq_A GTP-binding protein; st 97.0 0.00046 1.6E-08 52.8 3.2 23 20-42 2-24 (397)
447 3foz_A TRNA delta(2)-isopenten 96.9 0.00063 2.2E-08 50.7 3.7 25 18-42 10-34 (316)
448 2x2e_A Dynamin-1; nitration, h 96.9 0.00032 1.1E-08 52.5 2.1 23 20-42 33-55 (353)
449 1sxj_D Activator 1 41 kDa subu 96.9 0.00066 2.3E-08 49.9 3.8 22 21-42 61-82 (353)
450 2orw_A Thymidine kinase; TMTK, 96.9 0.00063 2.2E-08 46.6 3.4 22 17-38 2-24 (184)
451 4a1f_A DNAB helicase, replicat 96.9 0.00039 1.3E-08 52.2 2.4 38 14-51 42-79 (338)
452 2v1u_A Cell division control p 96.9 0.0005 1.7E-08 50.9 2.9 27 16-42 42-68 (387)
453 3r7w_A Gtpase1, GTP-binding pr 96.9 0.00077 2.6E-08 49.5 3.9 23 19-41 4-26 (307)
454 3p32_A Probable GTPase RV1496/ 96.9 0.00055 1.9E-08 51.4 3.1 26 17-42 78-103 (355)
455 3eph_A TRNA isopentenyltransfe 96.9 0.00059 2E-08 52.6 3.3 24 19-42 3-26 (409)
456 3tqf_A HPR(Ser) kinase; transf 96.9 0.00066 2.3E-08 46.7 3.1 24 17-40 15-38 (181)
457 2chg_A Replication factor C sm 96.9 0.00065 2.2E-08 46.0 3.1 22 20-41 40-61 (226)
458 3th5_A RAS-related C3 botulinu 95.9 0.00017 5.8E-09 49.2 0.0 22 20-41 32-53 (204)
459 3l0i_B RAS-related protein RAB 96.8 9.3E-05 3.2E-09 50.4 -1.4 23 20-42 35-57 (199)
460 3n70_A Transport activator; si 96.8 0.00095 3.2E-08 43.6 3.5 32 16-47 22-53 (145)
461 2qpt_A EH domain-containing pr 96.8 0.00059 2E-08 54.3 2.9 24 19-42 66-89 (550)
462 2xau_A PRE-mRNA-splicing facto 96.8 0.00052 1.8E-08 56.7 2.6 30 16-45 107-136 (773)
463 2q6t_A DNAB replication FORK h 96.8 0.00083 2.8E-08 51.8 3.6 31 13-43 195-225 (444)
464 3gee_A MNME, tRNA modification 96.8 0.00032 1.1E-08 55.0 1.2 28 14-41 229-256 (476)
465 3gj0_A GTP-binding nuclear pro 96.8 0.0004 1.4E-08 48.0 1.6 21 20-40 17-38 (221)
466 3ec1_A YQEH GTPase; atnos1, at 96.8 0.00066 2.2E-08 51.4 2.8 25 17-41 161-185 (369)
467 1f5n_A Interferon-induced guan 96.8 0.00066 2.3E-08 54.6 2.9 26 17-42 37-62 (592)
468 3sjy_A Translation initiation 96.8 0.00092 3.1E-08 50.9 3.5 24 19-42 9-32 (403)
469 2j69_A Bacterial dynamin-like 96.8 0.00063 2.1E-08 55.5 2.7 27 16-42 67-93 (695)
470 2r62_A Cell division protease 96.8 0.00034 1.2E-08 49.8 1.0 20 21-40 47-66 (268)
471 3syl_A Protein CBBX; photosynt 96.7 0.0011 3.6E-08 48.1 3.6 27 16-42 65-91 (309)
472 1lnz_A SPO0B-associated GTP-bi 96.7 0.00055 1.9E-08 51.4 1.9 22 20-41 160-181 (342)
473 2vf7_A UVRA2, excinuclease ABC 96.7 0.00073 2.5E-08 56.4 2.7 22 14-35 32-53 (842)
474 2hjg_A GTP-binding protein ENG 96.7 0.00098 3.4E-08 51.3 3.2 23 20-42 177-199 (436)
475 3h2y_A GTPase family protein; 96.7 0.00072 2.5E-08 51.2 2.3 25 17-41 159-183 (368)
476 3gmt_A Adenylate kinase; ssgci 96.7 0.0011 3.9E-08 47.2 3.1 22 19-40 9-30 (230)
477 1d2n_A N-ethylmaleimide-sensit 96.6 0.0011 3.8E-08 47.4 3.1 25 17-41 63-87 (272)
478 2qgz_A Helicase loader, putati 96.6 0.0014 4.7E-08 48.3 3.6 26 18-43 152-177 (308)
479 2qen_A Walker-type ATPase; unk 96.6 0.0014 4.8E-08 47.8 3.6 26 17-42 30-55 (350)
480 1zcb_A G alpha I/13; GTP-bindi 96.6 0.0014 4.7E-08 49.6 3.6 24 16-39 31-54 (362)
481 1mky_A Probable GTP-binding pr 96.6 0.0013 4.4E-08 50.6 3.5 23 20-42 3-25 (439)
482 1ofh_A ATP-dependent HSL prote 96.6 0.0014 4.6E-08 47.3 3.4 26 17-42 49-74 (310)
483 1x6v_B Bifunctional 3'-phospho 96.6 0.0015 5.1E-08 52.9 3.9 26 17-42 51-76 (630)
484 3hws_A ATP-dependent CLP prote 96.6 0.0014 4.6E-08 49.0 3.4 26 17-42 50-75 (363)
485 2qby_B CDC6 homolog 3, cell di 96.6 0.0014 4.9E-08 48.6 3.6 25 18-42 45-69 (384)
486 1g8f_A Sulfate adenylyltransfe 96.6 0.0013 4.4E-08 52.0 3.4 30 15-44 392-421 (511)
487 3uk6_A RUVB-like 2; hexameric 96.6 0.0014 4.7E-08 48.6 3.4 28 16-43 68-95 (368)
488 1m8p_A Sulfate adenylyltransfe 96.6 0.0015 5.1E-08 52.3 3.7 28 16-43 394-421 (573)
489 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.0017 5.7E-08 48.1 3.8 27 16-42 43-69 (322)
490 4a9a_A Ribosome-interacting GT 96.6 0.0013 4.5E-08 50.1 3.2 23 20-42 74-96 (376)
491 3d8b_A Fidgetin-like protein 1 96.6 0.0018 6.3E-08 48.4 3.8 26 17-42 116-141 (357)
492 3dpu_A RAB family protein; roc 96.6 0.0015 5E-08 51.5 3.5 25 18-42 41-65 (535)
493 3t15_A Ribulose bisphosphate c 96.5 0.0018 6.2E-08 47.2 3.5 23 19-41 37-59 (293)
494 3o47_A ADP-ribosylation factor 96.5 0.0011 3.9E-08 49.2 2.4 23 20-42 167-189 (329)
495 3eie_A Vacuolar protein sortin 96.5 0.002 6.7E-08 47.5 3.7 25 17-41 50-74 (322)
496 3pvs_A Replication-associated 96.5 0.0014 4.9E-08 50.8 3.0 23 20-42 52-74 (447)
497 3pfi_A Holliday junction ATP-d 96.5 0.0016 5.5E-08 47.8 3.1 23 19-41 56-78 (338)
498 2j37_W Signal recognition part 96.5 0.0018 6.1E-08 51.1 3.4 23 17-39 100-122 (504)
499 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0015 5E-08 49.1 2.8 29 13-41 118-146 (331)
500 2bjv_A PSP operon transcriptio 96.5 0.0027 9.3E-08 45.1 4.1 28 17-44 28-55 (265)
No 1
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.96 E-value=7.2e-29 Score=189.99 Aligned_cols=121 Identities=26% Similarity=0.361 Sum_probs=102.7
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|++|.-.+. +++||+++|+||||||||||||+|+|+.+|++|+|.++|+++..... ..+.|||||
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~--~~r~ig~Vf 81 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGMVF 81 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSCEEEEC
T ss_pred EEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH--HHCCEEEEe
Confidence 5566776654433 28999999999999999999999999999999999999988765332 236799999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+||++||.||+.+....++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~L 134 (381)
T 3rlf_A 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL 134 (381)
T ss_dssp TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGS
T ss_pred cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHC
Confidence 99999999999999999888887778888899999999999976 56777665
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.96 E-value=2.6e-29 Score=191.26 Aligned_cols=123 Identities=26% Similarity=0.358 Sum_probs=100.9
Q ss_pred ccccchhhhhcccc---------CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC--CCcCCCeEEE
Q psy340 2 KTNTNTKKKKKKKK---------KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG--SGVPGKRVGY 70 (125)
Q Consensus 2 ~~~~~~~~~~~~~~---------~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~--~~~~~~~ig~ 70 (125)
+.++|++|.-.++. ++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.... ....++.|||
T Consensus 5 l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~ 84 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGY 84 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEE
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEE
Confidence 56777777654332 899999999999999999999999999999999999998873211 1123467999
Q ss_pred EccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 71 MPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 71 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|||++.+|+++||.||+.|....++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 85 vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~L 139 (359)
T 3fvq_A 85 LVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHEL 139 (359)
T ss_dssp ECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGS
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 9999999999999999999766666667777889999999999976 56777665
No 3
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=3.7e-28 Score=185.12 Aligned_cols=121 Identities=25% Similarity=0.279 Sum_probs=101.1
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|++|+-.++ +++||+++|+|||||||||||++|+|+.+|++|+|.++|.++..... .++.|||||
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~ 81 (362)
T 2it1_A 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP--KDRNVGLVF 81 (362)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTEEEEC
T ss_pred EEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH--hHCcEEEEe
Confidence 5677777765433 28999999999999999999999999999999999999988754322 236799999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+|+++||.||+.+....++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 134 (362)
T 2it1_A 82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQL 134 (362)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGS
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhC
Confidence 99999999999999999877666666777788999999999976 56777665
No 4
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=2.7e-28 Score=185.47 Aligned_cols=121 Identities=27% Similarity=0.406 Sum_probs=100.4
Q ss_pred ccccchhhhh-ccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 2 KTNTNTKKKK-KKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 2 ~~~~~~~~~~-~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
+.++|++|+- .++ +++||+++|+|||||||||||++|+|+.+|++|+|.++|.++.... ..++.||||
T Consensus 15 l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~--~~~r~ig~v 92 (355)
T 1z47_A 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP--PQKRNVGLV 92 (355)
T ss_dssp EEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC--GGGSSEEEE
T ss_pred EEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC--hhhCcEEEE
Confidence 4566777665 332 2899999999999999999999999999999999999998875422 224679999
Q ss_pred ccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 72 PQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
||++.+|+++||.||+.|....++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 93 ~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~L 146 (355)
T 1z47_A 93 FQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHEL 146 (355)
T ss_dssp CGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccC
Confidence 999999999999999999877766666777788999999999976 46777665
No 5
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.95 E-value=1.2e-28 Score=187.82 Aligned_cols=124 Identities=23% Similarity=0.310 Sum_probs=102.4
Q ss_pred Cccccchhhhhcc-------------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCc---C
Q psy340 1 MKTNTNTKKKKKK-------------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGV---P 64 (125)
Q Consensus 1 ~~~~~~~~~~~~~-------------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~---~ 64 (125)
|+.++|++|.-.. .+++||++||+||||||||||+++|+|+.+|++|+|.++|.++....... .
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4566777765431 12999999999999999999999999999999999999999876533211 2
Q ss_pred CCeEEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 65 GKRVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 65 ~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
++.||||||++.+++.+||.||+.+....++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~L 164 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL 164 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTS
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 4679999999999999999999999887777777888889999999999976 46666654
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.95 E-value=2.3e-28 Score=175.39 Aligned_cols=123 Identities=25% Similarity=0.269 Sum_probs=97.4
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCc----CCCeE
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGV----PGKRV 68 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~----~~~~i 68 (125)
+.++|++|.-.++ +++||+++|+||||||||||+++|+|+.+|++|+|.++|.++....... +++.+
T Consensus 5 l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 84 (224)
T 2pcj_A 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKL 84 (224)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHE
T ss_pred EEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcE
Confidence 5667777654332 3899999999999999999999999999999999999998765422110 12569
Q ss_pred EEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 69 GYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 69 g~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+||||++.+++.+||.||+.+....++.+..+..+++.++++.++|.+ .++.+.+|
T Consensus 85 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (224)
T 2pcj_A 85 GFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYEL 141 (224)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGS
T ss_pred EEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 999999999999999999998766655555566678899999999976 46666654
No 7
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=2e-28 Score=186.47 Aligned_cols=121 Identities=26% Similarity=0.276 Sum_probs=98.0
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|++|+-.++ +++||+++|+|||||||||||++|+|+.+|++|+|.++|.++..... .++.+||||
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~ 81 (359)
T 2yyz_A 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP--KYREVGMVF 81 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTEEEEC
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh--hhCcEEEEe
Confidence 5667777665433 28999999999999999999999999999999999999988754322 236799999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+|+++||.||+.|....++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 134 (359)
T 2yyz_A 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQL 134 (359)
T ss_dssp SSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 99999999999999998755444444555678999999999976 46777665
No 8
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.95 E-value=3.7e-28 Score=185.74 Aligned_cols=121 Identities=24% Similarity=0.294 Sum_probs=100.0
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCC------CCCCcCCC
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT------KGSGVPGK 66 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~------~~~~~~~~ 66 (125)
+.++|++|+-.++ +++||+++|+|||||||||||++|+|+.+|++|+|.++|.++.. .. ..++
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~--~~~r 81 (372)
T 1g29_1 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP--PKDR 81 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC--GGGS
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCC--HhHC
Confidence 5667777665432 28999999999999999999999999999999999999987643 11 1246
Q ss_pred eEEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 67 RVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 67 ~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.||||||++.+|+++||.||+.|....++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 82 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 140 (372)
T 1g29_1 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPREL 140 (372)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGS
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccC
Confidence 79999999999999999999999877766666777788999999999976 46766665
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.95 E-value=5.3e-28 Score=174.61 Aligned_cols=124 Identities=21% Similarity=0.219 Sum_probs=97.5
Q ss_pred Cccccchhhhhcc-------------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCc----
Q psy340 1 MKTNTNTKKKKKK-------------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGV---- 63 (125)
Q Consensus 1 ~~~~~~~~~~~~~-------------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~---- 63 (125)
|+.++|++|.-.. .+++||++||+||||||||||+++|+|+.+|++|+|.++|.++.......
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 4566777765431 23999999999999999999999999999999999999998875432211
Q ss_pred CCCeEEEEccCcccCCCCCHHHHHHHHHHHh---CCChHHHHHHHHHHHHhCCCCc-c-chhhhhc
Q psy340 64 PGKRVGYMPQEIALYGEFSIKETMMYFGWIF---GMETPEIDDRLQFLLNFLDLPS-Q-SRLVKNL 124 (125)
Q Consensus 64 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~-~-~~~~~~L 124 (125)
+++.+|||||++.+++.+||.||+.+..... .....+..+++.++++.++|.+ . ++.+.+|
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 146 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQL 146 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGS
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhC
Confidence 1236999999999999999999999876543 3445666788999999999975 3 6666654
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=5.3e-28 Score=176.73 Aligned_cols=122 Identities=21% Similarity=0.318 Sum_probs=97.8
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|++|+-.++ +++||+++|+|||||||||||++|+|+.+|++|+|.++|.++... ....++.+||||
T Consensus 16 l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~-~~~~~~~i~~v~ 94 (256)
T 1vpl_A 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLISYLP 94 (256)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTEEEEC
T ss_pred EEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc-HHHHhhcEEEEc
Confidence 5677777765433 389999999999999999999999999999999999999876432 112245799999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+++.+||.||+.+....++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 95 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 147 (256)
T 1vpl_A 95 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTY 147 (256)
T ss_dssp TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGC
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhC
Confidence 99999999999999998766666555555677889999999976 46666654
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.95 E-value=6.1e-28 Score=177.04 Aligned_cols=124 Identities=19% Similarity=0.241 Sum_probs=96.6
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC--CcCCCeEE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS--GVPGKRVG 69 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~--~~~~~~ig 69 (125)
|+.++|++|.-.++ +++||+++|+|||||||||||++|+|+++|++|+|.++|.++..... ...++.+|
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 35677777665433 39999999999999999999999999999999999999987641111 11235699
Q ss_pred EEccCcccCCCCCHHHHHHHHH-HHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 70 YMPQEIALYGEFSIKETMMYFG-WIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 70 ~v~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
||||++.+++.+||.||+.+.. ..++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 160 (263)
T 2olj_A 104 MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSL 160 (263)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhC
Confidence 9999999999999999999854 4445555556678899999999975 46666554
No 12
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.95 E-value=4.5e-28 Score=185.22 Aligned_cols=121 Identities=24% Similarity=0.300 Sum_probs=92.4
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|++|+-.++ +++||+++|+|||||||||||++|+|+.+|++|+|.++|.++..... .++.|||||
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~ 89 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP--KDRNISMVF 89 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGGTEEEEE
T ss_pred EEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh--hhCcEEEEe
Confidence 5667777665433 28999999999999999999999999999999999999988754322 236799999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+|+++||.||+.|....++.+..+..+++.++++.++|.+ .++.+.+|
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 142 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQL 142 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTC
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhC
Confidence 99999999999999998755555566667788999999999976 46666655
No 13
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=3.7e-28 Score=184.65 Aligned_cols=123 Identities=27% Similarity=0.388 Sum_probs=98.8
Q ss_pred ccccchhhhhcc-c----------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC---CCcCCCe
Q psy340 2 KTNTNTKKKKKK-K----------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG---SGVPGKR 67 (125)
Q Consensus 2 ~~~~~~~~~~~~-~----------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~---~~~~~~~ 67 (125)
+.++|++|+-.+ . +++||+++|+|||||||||||++|+|+.+|++|+|.++|.++.... ....++.
T Consensus 4 l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ 83 (353)
T 1oxx_K 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRK 83 (353)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSC
T ss_pred EEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCC
Confidence 566777665432 2 3899999999999999999999999999999999999998764310 1122467
Q ss_pred EEEEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 68 VGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 68 ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+|||||++.+++++||.||+.+....++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 84 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~L 141 (353)
T 1oxx_K 84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPREL 141 (353)
T ss_dssp EEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 9999999999999999999998765555566667788999999999976 46766665
No 14
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.94 E-value=5.8e-28 Score=178.18 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=97.4
Q ss_pred ccccchhhhhcc-c---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC--CCcCCCeEE
Q psy340 2 KTNTNTKKKKKK-K---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG--SGVPGKRVG 69 (125)
Q Consensus 2 ~~~~~~~~~~~~-~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~--~~~~~~~ig 69 (125)
+.++|++|+-.+ . +++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ....++.||
T Consensus 8 l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig 87 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG 87 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEE
T ss_pred EEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEE
Confidence 456777776532 2 2899999999999999999999999999999999999998874210 111245799
Q ss_pred EEccCcc-cCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 70 YMPQEIA-LYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 70 ~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
||||++. .+..+||.||+.+....++.+..+..+++.++++.++|++ .++.+.+|
T Consensus 88 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 144 (275)
T 3gfo_A 88 IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCL 144 (275)
T ss_dssp EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccC
Confidence 9999973 4457899999999877666777777889999999999976 46666654
No 15
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.94 E-value=1.9e-27 Score=180.45 Aligned_cols=119 Identities=20% Similarity=0.272 Sum_probs=96.1
Q ss_pred Cccccchhhhhcc--------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 1 MKTNTNTKKKKKK--------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 1 ~~~~~~~~~~~~~--------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
|+.++|++|+-.+ .+++||+++|+|||||||||||++|+|+.+|++|+|.++|.++.... ..++.|||||
T Consensus 1 ml~~~~l~~~y~~~~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~--~~~r~ig~v~ 78 (348)
T 3d31_A 1 MIEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS--PEKHDIAFVY 78 (348)
T ss_dssp CEEEEEEEEECSSCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC--HHHHTCEEEC
T ss_pred CEEEEEEEEEECCEEEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc--hhhCcEEEEe
Confidence 4566677665533 13899999999999999999999999999999999999998875421 1235799999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+|+++||.||+.+....++.+.. +++.++++.++|++ .++.+.+|
T Consensus 79 Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~L 128 (348)
T 3d31_A 79 QNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTL 128 (348)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGS
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhC
Confidence 999999999999999997766554433 67889999999976 56777665
No 16
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.94 E-value=3.2e-27 Score=172.99 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=96.1
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCC----------CCC
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT----------KGS 61 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~----------~~~ 61 (125)
|+.++|++|.-.++ +++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ...
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 35677777655433 39999999999999999999999999999999999999987641 100
Q ss_pred ---CcCCCeEEEEccCcccCCCCCHHHHHHHHH-HHhCCChHHHHHHHHHHHHhCCCCc--cchhhhhc
Q psy340 62 ---GVPGKRVGYMPQEIALYGEFSIKETMMYFG-WIFGMETPEIDDRLQFLLNFLDLPS--QSRLVKNL 124 (125)
Q Consensus 62 ---~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~L 124 (125)
...++.+|||||++.+++.+||.||+.+.. ..++.+..+..+++.++++.++|.+ .++.+.+|
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L 154 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 154 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGS
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccC
Confidence 012357999999999999999999999854 4445555556678899999999975 35666554
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.94 E-value=2.1e-27 Score=173.41 Aligned_cols=123 Identities=19% Similarity=0.182 Sum_probs=94.0
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC-cCCCeEEEE
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG-VPGKRVGYM 71 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ig~v 71 (125)
+.++|++|.-.++ +++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... ..++.++||
T Consensus 8 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRT 87 (257)
T ss_dssp EEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred EEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 4566776654332 389999999999999999999999999999999999999876532111 113469999
Q ss_pred ccCcccCCCCCHHHHHHHHHHH--hC-----------CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 72 PQEIALYGEFSIKETMMYFGWI--FG-----------METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~--~~-----------~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
||++.+++.+||.||+.+.... .+ ....+..+++.++++.++|++ .++.+.+|
T Consensus 88 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 154 (257)
T 1g6h_A 88 FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL 154 (257)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred ccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhC
Confidence 9999999999999999875432 12 223455678899999999975 46666654
No 18
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.94 E-value=2.8e-27 Score=173.76 Aligned_cols=121 Identities=19% Similarity=0.190 Sum_probs=94.6
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~ 72 (125)
+.++|+++.-.++ +++||++||+||||||||||+++|+|+++|++|+|.++|.++........++.++|++
T Consensus 12 l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~ 91 (266)
T 4g1u_C 12 LEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMR 91 (266)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred EEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEe
Confidence 4566666654433 2999999999999999999999999999999999999998876533222345699999
Q ss_pred cCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|++.+++.+||.||+.+....+ ...+..+++.++++.++|.+ .++.+.+|
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 142 (266)
T 4g1u_C 92 QYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVL 142 (266)
T ss_dssp SCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGC
T ss_pred cCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccC
Confidence 9998888999999999864433 23344677889999999976 46666554
No 19
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.94 E-value=1.2e-26 Score=165.73 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=90.1
Q ss_pred ccccchhhhhcc--------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEcc
Q psy340 2 KTNTNTKKKKKK--------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73 (125)
Q Consensus 2 ~~~~~~~~~~~~--------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q 73 (125)
+.++|++++-.+ .+++||+++|+|||||||||||++|+|+.+|++|+|.++|.++. ..++.++||||
T Consensus 11 l~~~~ls~~y~~~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v~q 85 (214)
T 1sgw_A 11 LEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPE 85 (214)
T ss_dssp EEEEEEEEESSSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEECS
T ss_pred EEEEEEEEEeCCeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEEeC
Confidence 455666655432 23899999999999999999999999999999999999998764 13467999999
Q ss_pred CcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCccchhhhhc
Q psy340 74 EIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPSQSRLVKNL 124 (125)
Q Consensus 74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~L 124 (125)
++.+++.+||.||+.+....++. ..+ .+++.++++.++|+..++.+.+|
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~~~~~~~L 134 (214)
T 1sgw_A 86 EIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDLKKKLGEL 134 (214)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCTTSBGGGS
T ss_pred CCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcCCCChhhC
Confidence 99999999999999987655442 222 46788899999996434444443
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.93 E-value=8.6e-27 Score=168.90 Aligned_cols=119 Identities=23% Similarity=0.317 Sum_probs=92.5
Q ss_pred Cccccchhhhhccc-------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEcc
Q psy340 1 MKTNTNTKKKKKKK-------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73 (125)
Q Consensus 1 ~~~~~~~~~~~~~~-------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q 73 (125)
|+.++|++|+-.+. +++ |+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ..++.+|||||
T Consensus 1 ml~~~~l~~~y~~~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q 77 (240)
T 2onk_A 1 MFLKVRAEKRLGNFRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQ 77 (240)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCS
T ss_pred CEEEEEEEEEeCCEEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEEcC
Confidence 45667777654332 388 999999999999999999999999999999999998765421 23467999999
Q ss_pred CcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 74 EIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
++.+++.+||.||+.+....++ .....+++.++++.++|.+ .++.+.+|
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~L 127 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKPARL 127 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSC--HHHHHHHHHHHHHTTTCTTTTTCCGGGS
T ss_pred CCccCCCCcHHHHHHHHHHHcC--CchHHHHHHHHHHHcCCHHHhcCChhhC
Confidence 9999999999999987543222 1222567889999999976 46666654
No 21
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=6.4e-27 Score=169.37 Aligned_cols=122 Identities=21% Similarity=0.300 Sum_probs=91.4
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC-cCCCeEEEE
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG-VPGKRVGYM 71 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ig~v 71 (125)
+.++|++|+-.++ +++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... ..++.+|||
T Consensus 7 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 86 (240)
T 1ji0_A 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEE
Confidence 5567777665433 389999999999999999999999999999999999999876532211 113459999
Q ss_pred ccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC-CCc-cchhhhhc
Q psy340 72 PQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLD-LPS-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-L~~-~~~~~~~L 124 (125)
||++.+++.+||.||+.+... ......+..+++.++++.++ +.+ .++.+.+|
T Consensus 87 ~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~L 140 (240)
T 1ji0_A 87 PEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTL 140 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSS
T ss_pred ecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhC
Confidence 999999999999999987531 22233455667888899994 754 34545443
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.93 E-value=3.2e-26 Score=167.98 Aligned_cols=120 Identities=16% Similarity=0.133 Sum_probs=91.9
Q ss_pred Cccccchhhhhc--c------------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCC
Q psy340 1 MKTNTNTKKKKK--K------------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGK 66 (125)
Q Consensus 1 ~~~~~~~~~~~~--~------------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 66 (125)
|+.++|++|+-. + .+++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ..++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence 456777776643 2 1389999999999999999999999999999999999999876421 2346
Q ss_pred eEEEEccCc-ccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC--c-cchhhhhc
Q psy340 67 RVGYMPQEI-ALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP--S-QSRLVKNL 124 (125)
Q Consensus 67 ~ig~v~Q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~-~~~~~~~L 124 (125)
.+|||+|++ ..++.+||.||+.+....+ .+..+..+++.++++.++|+ + .++.+.+|
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~L 139 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFL 139 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGS
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhC
Confidence 799999996 5677899999999854322 22333356788899999998 6 46666554
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.92 E-value=3e-26 Score=169.26 Aligned_cols=123 Identities=19% Similarity=0.312 Sum_probs=89.7
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCC--CCCCCcCCCeEEE
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPG--TKGSGVPGKRVGY 70 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~--~~~~~~~~~~ig~ 70 (125)
+.++|++|.-.++ +++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .......++.|||
T Consensus 22 l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~ 101 (279)
T 2ihy_A 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGF 101 (279)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEE
T ss_pred EEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEE
Confidence 5667777665433 3899999999999999999999999999999999999998764 2211122457999
Q ss_pred EccCcccC--CCCCHHHHHHHHHH----HhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 71 MPQEIALY--GEFSIKETMMYFGW----IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 71 v~Q~~~~~--~~~tv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
|||++.++ +.+||.||+.+... .++....+..+++.++++.++|.+ .++.+.+|
T Consensus 102 v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 162 (279)
T 2ihy_A 102 VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYL 162 (279)
T ss_dssp ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhC
Confidence 99997543 45699999987421 122223445677889999999975 46666654
No 24
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.92 E-value=1.1e-25 Score=163.84 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=88.3
Q ss_pred ccccchhhh-----hccccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcc
Q psy340 2 KTNTNTKKK-----KKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA 76 (125)
Q Consensus 2 ~~~~~~~~~-----~~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~ 76 (125)
+.++|+++. .+=.+++||+++|+|||||||||||++|+|+++|+ |+|.++|.++........++.++||+|++.
T Consensus 5 l~~~~l~~~~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 83 (249)
T 2qi9_C 5 MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQT 83 (249)
T ss_dssp EEEEEEEETTTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCC
T ss_pred EEEEceEEEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCc
Confidence 556677665 01123899999999999999999999999999999 999999987643221122357999999999
Q ss_pred cCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 77 LYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 77 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
+++.+||.||+.+.. ..... .+++.++++.++|++ .++.+.+|
T Consensus 84 ~~~~~tv~e~l~~~~-~~~~~----~~~~~~~l~~~~l~~~~~~~~~~L 127 (249)
T 2qi9_C 84 PPFATPVWHYLTLHQ-HDKTR----TELLNDVAGALALDDKLGRSTNQL 127 (249)
T ss_dssp CCTTCBHHHHHHTTC-SSTTC----HHHHHHHHHHTTCGGGTTSBGGGC
T ss_pred cCCCCcHHHHHHHhh-ccCCc----HHHHHHHHHHcCChhHhcCChhhC
Confidence 899999999998742 11111 566888999999975 45656554
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.91 E-value=2.4e-25 Score=161.91 Aligned_cols=122 Identities=20% Similarity=0.149 Sum_probs=91.3
Q ss_pred ccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCC--CcCCceeEEEcCccCCCCCCCc-CCCeEE
Q psy340 2 KTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGR--RRLNTGEIWVLGGKPGTKGSGV-PGKRVG 69 (125)
Q Consensus 2 ~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~--~~~~~G~i~~~g~~~~~~~~~~-~~~~ig 69 (125)
+.++|+++.-.++ +++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++....... .+..++
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 83 (250)
T 2d2e_A 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLF 83 (250)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBC
T ss_pred EEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEE
Confidence 5667777665432 389999999999999999999999998 7899999999998765422111 123589
Q ss_pred EEccCcccCCCCCHHHHHHHHHH-HhC--CChHHHHHHHHHHHHhCCCC-c-cchhhhh
Q psy340 70 YMPQEIALYGEFSIKETMMYFGW-IFG--METPEIDDRLQFLLNFLDLP-S-QSRLVKN 123 (125)
Q Consensus 70 ~v~Q~~~~~~~~tv~e~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~ 123 (125)
||+|++.+++.+||.||+.+... ..+ ....+..+++.++++.++|+ + .++.+.+
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 142 (250)
T 2d2e_A 84 LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNE 142 (250)
T ss_dssp CCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTC
T ss_pred EeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 99999999999999999987643 222 22344457788999999994 4 4555554
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.91 E-value=3e-24 Score=156.52 Aligned_cols=110 Identities=23% Similarity=0.293 Sum_probs=86.6
Q ss_pred ccccchhhhhc-cc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEE
Q psy340 2 KTNTNTKKKKK-KK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM 71 (125)
Q Consensus 2 ~~~~~~~~~~~-~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v 71 (125)
+.++|+++.-. ++ +++||+++|+||||||||||+++|+|+++|++|+|.+ ++.++||
T Consensus 5 l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------~~~i~~v 71 (253)
T 2nq2_C 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQSIGFV 71 (253)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------CSCEEEE
T ss_pred EEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------eccEEEE
Confidence 56677776653 32 3899999999999999999999999999999999982 3579999
Q ss_pred ccCcccCCCCCHHHHHHHHHHHh-C---CChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 72 PQEIALYGEFSIKETMMYFGWIF-G---METPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 72 ~Q~~~~~~~~tv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
||++.+++.+||.||+.+....+ + ....+..+++.++++.++|.+ .++.+.+|
T Consensus 72 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 129 (253)
T 2nq2_C 72 PQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSL 129 (253)
T ss_dssp CSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred cCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhC
Confidence 99999898999999998864222 1 123444677899999999976 45666554
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.90 E-value=1.1e-24 Score=157.91 Aligned_cols=110 Identities=20% Similarity=0.197 Sum_probs=83.4
Q ss_pred Cccccchhhhh-ccc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEE
Q psy340 1 MKTNTNTKKKK-KKK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGY 70 (125)
Q Consensus 1 ~~~~~~~~~~~-~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~ 70 (125)
|+.++|+++.- .++ +++||+++|+||||||||||+++|+|+++|++|+|.++|.++........++.++|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 45667777665 222 39999999999999999999999999999999999999988754333334567999
Q ss_pred EccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc
Q psy340 71 MPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 71 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
|||++.+++ .||.||+.+... .... .+++.++++.+++.+
T Consensus 81 v~q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~l~~~~l~~ 120 (243)
T 1mv5_A 81 VSQDSAIMA-GTIRENLTYGLE-GDYT----DEDLWQVLDLAFARS 120 (243)
T ss_dssp ECCSSCCCC-EEHHHHTTSCTT-SCSC----HHHHHHHHHHHTCTT
T ss_pred EcCCCcccc-ccHHHHHhhhcc-CCCC----HHHHHHHHHHhChHH
Confidence 999998887 599999987421 1111 234666777777754
No 28
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.90 E-value=4.1e-24 Score=156.68 Aligned_cols=113 Identities=23% Similarity=0.284 Sum_probs=88.5
Q ss_pred Cccccchhhhhcc----c---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCe
Q psy340 1 MKTNTNTKKKKKK----K---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR 67 (125)
Q Consensus 1 ~~~~~~~~~~~~~----~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 67 (125)
|+.++|++|+-.. + ++ ||+++|+|||||||||||++|+|+. |++|+|.++|.++... .. ++.
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~ 75 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIR 75 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTT
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhh
Confidence 4567777766543 2 38 9999999999999999999999999 9999999999876432 22 567
Q ss_pred EE-EEccCcccCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 68 VG-YMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 68 ig-~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
++ ||||++.+ .+||.||+.+....+.. ..+++.++++.++|+ + .++.+.+|
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~L 129 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELKGL----DRDLFLEMLKALKLGEEILRRKLYKL 129 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHTCC----CHHHHHHHHHHTTCCGGGGGSBGGGS
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhcch----HHHHHHHHHHHcCCChhHhcCChhhC
Confidence 99 99999876 88999999986544422 135678899999997 6 46666654
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.90 E-value=3.8e-24 Score=157.05 Aligned_cols=122 Identities=17% Similarity=0.174 Sum_probs=90.5
Q ss_pred Cccccchhhhhccc---------cCCCcEEEEECCCCCCHHHHHHHHhCC--CcCCceeEEEcCccCCCCCCCcC-CCeE
Q psy340 1 MKTNTNTKKKKKKK---------KKKKKKYGLLGASGCGKTTLLSCIVGR--RRLNTGEIWVLGGKPGTKGSGVP-GKRV 68 (125)
Q Consensus 1 ~~~~~~~~~~~~~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~--~~~~~G~i~~~g~~~~~~~~~~~-~~~i 68 (125)
|+.++|++|+-.++ +++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++........ +..+
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 99 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGI 99 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCE
Confidence 35677777665332 389999999999999999999999999 46899999999987643221111 2349
Q ss_pred EEEccCcccCCCCCHHHHHHHHHH-H---hC---CChHHHHHHHHHHHHhCCCC-c-cchhhh
Q psy340 69 GYMPQEIALYGEFSIKETMMYFGW-I---FG---METPEIDDRLQFLLNFLDLP-S-QSRLVK 122 (125)
Q Consensus 69 g~v~Q~~~~~~~~tv~e~l~~~~~-~---~~---~~~~~~~~~~~~~l~~~~L~-~-~~~~~~ 122 (125)
+||+|++.+++.+||.+++.+... . ++ ....+..+++.++++.++|+ . .++.+.
T Consensus 100 ~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 100 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp EEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT
T ss_pred EEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 999999999999999999987531 1 12 23344567888999999995 3 355543
No 30
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.90 E-value=6.3e-25 Score=161.52 Aligned_cols=121 Identities=17% Similarity=0.114 Sum_probs=84.1
Q ss_pred ccccchhhhhcc---c---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEE
Q psy340 2 KTNTNTKKKKKK---K---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVG 69 (125)
Q Consensus 2 ~~~~~~~~~~~~---~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig 69 (125)
+.++|+++.-.. + +++||+++|+|||||||||||++|+|+++|++|+|.++|.++........++.|+
T Consensus 17 l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 96 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVA 96 (271)
T ss_dssp EEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEE
T ss_pred EEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEE
Confidence 456677665432 2 3999999999999999999999999999999999999998764322112245799
Q ss_pred EEccCcccCCCCCHHHHHHHHHHHhCCChHHH-----HHHHHHHHHhC--CCCc-cchhhhhc
Q psy340 70 YMPQEIALYGEFSIKETMMYFGWIFGMETPEI-----DDRLQFLLNFL--DLPS-QSRLVKNL 124 (125)
Q Consensus 70 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~L~~-~~~~~~~L 124 (125)
||||++.+++ .||.||+.+...... ...+. ...+.++++.+ ++.. .++.+.+|
T Consensus 97 ~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~L 157 (271)
T 2ixe_A 97 AVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQL 157 (271)
T ss_dssp EECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTS
T ss_pred EEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCC
Confidence 9999998887 599999987532111 10211 12345667777 5643 34444443
No 31
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.89 E-value=5.2e-24 Score=154.76 Aligned_cols=93 Identities=22% Similarity=0.283 Sum_probs=72.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||+++|+||||||||||+++|+|+++|++|+|.++|.++........++.|+||||++.+++ .||.||+.+.. ..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~--~~ 109 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN--PG 109 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC--TT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC--CC
Confidence 8999999999999999999999999999999999999988754322222457999999998886 59999998742 11
Q ss_pred CChHHHHHHHHHHHHhCCCC
Q psy340 96 METPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~ 115 (125)
.. .+++.++++.+++.
T Consensus 110 ~~----~~~~~~~l~~~~l~ 125 (247)
T 2ff7_A 110 MS----VEKVIYAAKLAGAH 125 (247)
T ss_dssp CC----HHHHHHHHHHHTCH
T ss_pred CC----HHHHHHHHHHhChH
Confidence 11 23455566666664
No 32
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.87 E-value=1.4e-23 Score=156.75 Aligned_cols=75 Identities=23% Similarity=0.369 Sum_probs=65.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||++||+||||||||||+++|+|+++|++|+|.++|.++........++.||||||++.+|+ .||+||+.+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~ 151 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYG 151 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTT
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhh
Confidence 38999999999999999999999999999999999999998765433334567999999998885 5999999875
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.87 E-value=4e-23 Score=158.71 Aligned_cols=100 Identities=22% Similarity=0.271 Sum_probs=78.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||+++|+|||||||||||++|+|+.+ ++|+|.++|+++........++.+|||||++.+|+ +||+||+.+..
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~--- 118 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA--- 118 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC---
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc---
Confidence 38999999999999999999999999998 89999999988765332223467999999998887 69999996421
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhh
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKN 123 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~ 123 (125)
.. ..+++.++++.++|.+ .++.+..
T Consensus 119 ~~----~~~~v~~~l~~~~L~~~~~~~p~~ 144 (390)
T 3gd7_A 119 AH----SDQEIWKVADEVGLRSVIEQFPGK 144 (390)
T ss_dssp CS----CHHHHHHHHHHTTCHHHHTTSTTG
T ss_pred cc----CHHHHHHHHHHhCCHHHHhhcccc
Confidence 11 1345778899999965 3555543
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.86 E-value=8.4e-23 Score=149.34 Aligned_cols=91 Identities=20% Similarity=0.286 Sum_probs=69.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||+++|+||||||||||+++|+|+++| +|+|.++|.++........++.|+||||++.+++ .||.||+.+.. ..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~--~~ 119 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGK--LD 119 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTC--TT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccC--CC
Confidence 89999999999999999999999999987 8999999987643221123467999999998886 59999998742 11
Q ss_pred CChHHHHHHHHHHHHhCCC
Q psy340 96 METPEIDDRLQFLLNFLDL 114 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L 114 (125)
.. .+++.++++.+++
T Consensus 120 ~~----~~~~~~~l~~~~l 134 (260)
T 2ghi_A 120 AT----DEEVIKATKSAQL 134 (260)
T ss_dssp CC----HHHHHHHHHHTTC
T ss_pred CC----HHHHHHHHHHhCC
Confidence 11 2334556666665
No 35
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.85 E-value=4.7e-22 Score=159.07 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=75.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||+++|+||||||||||+++|+|+++|++|+|.++|.++........++.++||+|++.+++. |++||+.+... ..
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~ 444 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-GE 444 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC-CC
Confidence 89999999999999999999999999999999999999887543333345689999999988875 99999987421 11
Q ss_pred CChHHHHHHHHHHHHhCCCCc
Q psy340 96 METPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~ 116 (125)
.. .+++.++++.+++.+
T Consensus 445 ~~----~~~~~~~~~~~~l~~ 461 (582)
T 3b5x_A 445 YT----REQIEQAARQAHAME 461 (582)
T ss_pred CC----HHHHHHHHHHCCCHH
Confidence 11 345667777777753
No 36
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.84 E-value=1.9e-21 Score=139.74 Aligned_cols=75 Identities=24% Similarity=0.331 Sum_probs=63.9
Q ss_pred ccccchhhhhc--cc---------cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEE
Q psy340 2 KTNTNTKKKKK--KK---------KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGY 70 (125)
Q Consensus 2 ~~~~~~~~~~~--~~---------~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~ 70 (125)
+.++|++++-. ++ +++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 7 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~~ 73 (229)
T 2pze_A 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISF 73 (229)
T ss_dssp EEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEEE
T ss_pred EEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEEE
Confidence 45666666552 12 289999999999999999999999999999999999976 3899
Q ss_pred EccCcccCCCCCHHHHHHHH
Q psy340 71 MPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 71 v~Q~~~~~~~~tv~e~l~~~ 90 (125)
++|++.+++. ||.||+.+.
T Consensus 74 v~q~~~~~~~-tv~enl~~~ 92 (229)
T 2pze_A 74 CSQFSWIMPG-TIKENIIFG 92 (229)
T ss_dssp ECSSCCCCSB-CHHHHHHTT
T ss_pred EecCCcccCC-CHHHHhhcc
Confidence 9999988875 999999874
No 37
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.84 E-value=4.5e-22 Score=159.14 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=75.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||+++|+||||||||||+++|+|+++|++|+|.++|.++........++.++||+|++.+++. |++||+.+... ..
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~ 444 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART-EE 444 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT-SC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC-CC
Confidence 89999999999999999999999999999999999999887543222334579999999988875 99999987421 11
Q ss_pred CChHHHHHHHHHHHHhCCCCc
Q psy340 96 METPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~~ 116 (125)
.. .+++.++++.+++.+
T Consensus 445 ~~----~~~~~~~l~~~~l~~ 461 (582)
T 3b60_A 445 YS----REQIEEAARMAYAMD 461 (582)
T ss_dssp CC----HHHHHHHHHTTTCHH
T ss_pred CC----HHHHHHHHHHcCCHH
Confidence 12 345667788777754
No 38
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.84 E-value=5.1e-22 Score=159.17 Aligned_cols=96 Identities=22% Similarity=0.215 Sum_probs=75.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFG 95 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~ 95 (125)
++||++||+||||||||||+++|+|+++|++|+|.++|.++........++.++||+|++.+++ .||+||+.+......
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~ 446 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDPS 446 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSSTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCcc
Confidence 8999999999999999999999999999999999999988754332233467999999998887 499999987432110
Q ss_pred CChHHHHHHHHHHHHhCCCC
Q psy340 96 METPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~L~ 115 (125)
....+++.++++.+++.
T Consensus 447 ---~~~~~~~~~~~~~~~l~ 463 (595)
T 2yl4_A 447 ---SVTAEEIQRVAEVANAV 463 (595)
T ss_dssp ---TSCHHHHHHHHHHTTCH
T ss_pred ---ccCHHHHHHHHHHcCCH
Confidence 11134566777777764
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.83 E-value=4.8e-21 Score=138.29 Aligned_cols=75 Identities=24% Similarity=0.381 Sum_probs=63.9
Q ss_pred ccccchhhhhc---c--------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEE
Q psy340 2 KTNTNTKKKKK---K--------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGY 70 (125)
Q Consensus 2 ~~~~~~~~~~~---~--------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~ 70 (125)
+.++|+++.-. + .+++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~ 70 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAY 70 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEE
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEE
Confidence 56677776543 1 1389999999999999999999999999999999999976 3899
Q ss_pred EccCcccCCCCCHHHHHHHH
Q psy340 71 MPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 71 v~Q~~~~~~~~tv~e~l~~~ 90 (125)
|+|++. ++.+||.||+.+.
T Consensus 71 v~Q~~~-~~~~tv~enl~~~ 89 (237)
T 2cbz_A 71 VPQQAW-IQNDSLRENILFG 89 (237)
T ss_dssp ECSSCC-CCSEEHHHHHHTT
T ss_pred EcCCCc-CCCcCHHHHhhCc
Confidence 999986 4578999999874
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.83 E-value=1.1e-21 Score=156.91 Aligned_cols=75 Identities=24% Similarity=0.386 Sum_probs=65.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||++||+||||||||||+++|+|+++|++|+|.++|.++........++.++||+|++.+++. ||+||+.+.
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~ 438 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLG 438 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGG
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcC
Confidence 389999999999999999999999999999999999999887654333345679999999988876 999999874
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=1.7e-21 Score=156.29 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=65.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||++||+||||||||||+++|+|+++|++|+|.++|.++........++.++||+|++.+++ .||+||+.+.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~ 452 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYG 452 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcC
Confidence 38999999999999999999999999999999999999988765433334568999999998886 4999999864
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.81 E-value=2.9e-20 Score=137.90 Aligned_cols=73 Identities=26% Similarity=0.380 Sum_probs=56.5
Q ss_pred ccccchhhhhcc-------ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccC
Q psy340 2 KTNTNTKKKKKK-------KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQE 74 (125)
Q Consensus 2 ~~~~~~~~~~~~-------~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~ 74 (125)
+.++|+++..+. .+++|++++|+|||||||||||++|+|+++|++|+|.++| .++||||+
T Consensus 41 l~~~~l~~~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~ 107 (290)
T 2bbs_A 41 LSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQN 107 (290)
T ss_dssp ---------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEEEECSS
T ss_pred EEEEEEEEcCceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEEEEeCC
Confidence 445666664211 1389999999999999999999999999999999999875 48999999
Q ss_pred cccCCCCCHHHHHH
Q psy340 75 IALYGEFSIKETMM 88 (125)
Q Consensus 75 ~~~~~~~tv~e~l~ 88 (125)
+.+++. ||.||+.
T Consensus 108 ~~l~~~-tv~enl~ 120 (290)
T 2bbs_A 108 SWIMPG-TIKENII 120 (290)
T ss_dssp CCCCSS-BHHHHHH
T ss_pred CccCcc-cHHHHhh
Confidence 988875 9999997
No 43
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=4.6e-21 Score=153.60 Aligned_cols=75 Identities=25% Similarity=0.260 Sum_probs=65.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++||+++|+||||||||||+++|+|+++|++|+|.++|.++........+++++||+|++.+++. |++||+.+.
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~ 440 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWG 440 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhcc
Confidence 389999999999999999999999999999999999999987654333345689999999988865 999999864
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.77 E-value=7.2e-20 Score=157.31 Aligned_cols=96 Identities=21% Similarity=0.277 Sum_probs=78.1
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||.+|||||||||||||+++|.|++.|++|+|.+||.|+........|++|+||||+|.+|.. |++||+.+...-.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~~ 1180 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDPS 1180 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCTT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCCC
Confidence 489999999999999999999999999999999999999998775555567889999999998876 9999998642111
Q ss_pred CCChHHHHHHHHHHHHhCCCC
Q psy340 95 GMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~ 115 (125)
.. ..+++.++++..++.
T Consensus 1181 ~~----sd~ei~~Al~~a~l~ 1197 (1321)
T 4f4c_A 1181 SV----TMAQVEEAARLANIH 1197 (1321)
T ss_dssp TS----CHHHHHHHHHHTTCH
T ss_pred CC----CHHHHHHHHHHhCCh
Confidence 11 234566677777764
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.76 E-value=8.9e-19 Score=140.94 Aligned_cols=93 Identities=25% Similarity=0.248 Sum_probs=73.1
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||++||+|||||||||||++|+|+.+|++|+|.+ ...++|+||++..++.+||.+++.......
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~ 445 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK 445 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEEEecCccCCCCCcHHHHHHhhhccC
Confidence 3689999999999999999999999999999999975 136999999987778899988876531110
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
....+++.++++.++|.+ .++.+.+|
T Consensus 446 ----~~~~~~~~~~l~~~~l~~~~~~~~~~L 472 (607)
T 3bk7_A 446 ----LNSNFYKTELLKPLGIIDLYDRNVEDL 472 (607)
T ss_dssp ----HHCHHHHHHTHHHHTCTTTTTSBGGGC
T ss_pred ----CCHHHHHHHHHHHcCCchHhcCChhhC
Confidence 011356778899999965 46666655
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.76 E-value=2.8e-19 Score=153.35 Aligned_cols=74 Identities=26% Similarity=0.338 Sum_probs=65.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
++||++||+||||||||||+++|+|+++|++|+|.++|.++........++.||||+|++.+++. ||+||+.+.
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g 487 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYG 487 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcC
Confidence 89999999999999999999999999999999999999887654433445679999999988876 999999975
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.75 E-value=3.5e-19 Score=153.08 Aligned_cols=94 Identities=22% Similarity=0.298 Sum_probs=76.0
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++|+.+||+||||||||||+++|.|++.|++|+|.++|.++........+++|+||+|++.+|.. |++||+.+...
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-- 517 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-- 517 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT--
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc--
Confidence 489999999999999999999999999999999999999988765544556789999999987765 99999997521
Q ss_pred CCChHHHHHHHHHHHHhCCCC
Q psy340 95 GMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~ 115 (125)
..+ .+++.++++..+++
T Consensus 518 ~~~----~~~v~~a~~~a~l~ 534 (1321)
T 4f4c_A 518 GIT----REEMVAACKMANAE 534 (1321)
T ss_dssp TCC----HHHHHHHHHHTTCH
T ss_pred cch----HHHHHHHHHHccch
Confidence 112 34456666666653
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.75 E-value=6e-19 Score=151.30 Aligned_cols=74 Identities=27% Similarity=0.403 Sum_probs=65.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
++||++||+||||||||||+++|+|+++|++|+|.++|.++........++.++||||++.+++ .||+||+.+.
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~ 1130 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYG 1130 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhcc
Confidence 8999999999999999999999999999999999999998865443345678999999997765 6999999864
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.75 E-value=2e-18 Score=137.17 Aligned_cols=91 Identities=27% Similarity=0.285 Sum_probs=72.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH-HHh
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG-WIF 94 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~-~~~ 94 (125)
++||++||+||||||||||+++|+|+.+|++|+|.+ ...++||+|++..++.+||.+++.... ...
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~ 376 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKADYEGTVYELLSKIDASKL 376 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEEEecCCcCCCCCcHHHHHHhhhccCC
Confidence 689999999999999999999999999999999974 136999999987778899988876531 111
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
. ..+++.++++.+++.+ .++.+.+|
T Consensus 377 ~-----~~~~~~~~l~~~~l~~~~~~~~~~L 402 (538)
T 1yqt_A 377 N-----SNFYKTELLKPLGIIDLYDREVNEL 402 (538)
T ss_dssp T-----CHHHHHHTTTTTTCGGGTTSBGGGC
T ss_pred C-----HHHHHHHHHHHcCChhhhcCChhhC
Confidence 1 1346778899999965 46666654
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.73 E-value=3.4e-18 Score=135.90 Aligned_cols=95 Identities=21% Similarity=0.226 Sum_probs=73.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
+++||++||+||||||||||+++|+|+.+|++|+|.++ +..++|++|+......+||.+++.+.....
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~------------~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 358 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPE------------KQILSYKPQRIFPNYDGTVQQYLENASKDA 358 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESS------------CCCEEEECSSCCCCCSSBHHHHHHHHCSST
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC------------CeeeEeechhcccccCCCHHHHHHHhhhhc
Confidence 47899999999999999999999999999999999863 246899999977677889999988632111
Q ss_pred CCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 95 GMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.. .....+.++++.++|.+ .++.+.+|
T Consensus 359 -~~--~~~~~~~~~l~~~~l~~~~~~~~~~L 386 (538)
T 3ozx_A 359 -LS--TSSWFFEEVTKRLNLHRLLESNVNDL 386 (538)
T ss_dssp -TC--TTSHHHHHTTTTTTGGGCTTSBGGGC
T ss_pred -cc--hhHHHHHHHHHHcCCHHHhcCChhhC
Confidence 11 11245678899999965 46666655
No 51
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=3.7e-19 Score=132.22 Aligned_cols=104 Identities=21% Similarity=0.201 Sum_probs=68.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEE---cCccCCCCCCCcCCCeEEEEccCcc----------------
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWV---LGGKPGTKGSGVPGKRVGYMPQEIA---------------- 76 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~ig~v~Q~~~---------------- 76 (125)
.+|++++|+|||||||||||++|+|+..|++|+|.+ +|.++.........+.+|||+|.|.
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~ 246 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKH 246 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGG
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHH
Confidence 569999999999999999999999999999999999 7877654322222246899999874
Q ss_pred cCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-c-cchhhhh
Q psy340 77 LYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP-S-QSRLVKN 123 (125)
Q Consensus 77 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~ 123 (125)
+++++++ +|+.+.... ...+...++.++++.++|+ + .++++..
T Consensus 247 l~~~~~~-~n~~~~~~~---~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ 291 (301)
T 1u0l_A 247 YFKEFGD-KQCFFSDCN---HVDEPECGVKEAVENGEIAESRYENYVKM 291 (301)
T ss_dssp GSTTSSS-CCCSSTTCC---SSSCSSCHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHhccc-ccCcCCCCc---CCCCCCcHHHHHHHcCCCCHHHHHHHHHH
Confidence 5788888 888764211 1233346788999999996 3 3555543
No 52
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.70 E-value=1.1e-18 Score=119.02 Aligned_cols=67 Identities=22% Similarity=0.159 Sum_probs=56.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
++|++++|+||||||||||+++|+|++ |++|+|.++|.++.... ..+ .+++|++.+| .+|+.|++.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~~---~~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NIA---GKMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EET---TEEEEEEECT-TCSCTTHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cCC---Ccceeccccc-cCCcHHHHHH
Confidence 899999999999999999999999999 99999999887654211 111 2799998888 8999999865
No 53
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.67 E-value=6e-20 Score=129.29 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=48.3
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
.+++|++++|+||||||||||+++|+|+++. +.+++...........++.++|+||++..++.+++.+++.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 5689999999999999999999999999863 3343211111111112356899999987777777766653
No 54
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.67 E-value=9.5e-18 Score=124.75 Aligned_cols=106 Identities=16% Similarity=0.067 Sum_probs=71.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEE---cCccCCCCCCCcCCCeEEEEccCcccC-----CCCCHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWV---LGGKPGTKGSGVPGKRVGYMPQEIALY-----GEFSIKETM 87 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~ig~v~Q~~~~~-----~~~tv~e~l 87 (125)
.+|++++|+||||||||||+|+|+ +..|++|+|.+ +|.+..........+.+|||+|.|.+. +.+|+ +++
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l 240 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REV 240 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGG
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHH
Confidence 579999999999999999999999 99999999999 887665432111113589999998553 67888 777
Q ss_pred --HHH----H--HHhC-CChHHHHHHHHHHHHhCCCCc--cchhhhh
Q psy340 88 --MYF----G--WIFG-METPEIDDRLQFLLNFLDLPS--QSRLVKN 123 (125)
Q Consensus 88 --~~~----~--~~~~-~~~~~~~~~~~~~l~~~~L~~--~~~~~~~ 123 (125)
.|. . .+++ .+..+...++.++++.++|+. .++++..
T Consensus 241 ~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ 287 (302)
T 2yv5_A 241 RNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKI 287 (302)
T ss_dssp GGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 333 1 1333 233444567889999999974 3444443
No 55
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.65 E-value=6.3e-18 Score=124.11 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=43.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
.++|+||||||||||+++|+|+..|++|+|.++|.++... ..++.++|++|++.+++.+||.|++.+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~ 72 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGD 72 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhh
Confidence 4899999999999999999999999999999998776322 23468999999999999999999988754
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.63 E-value=2.2e-17 Score=131.26 Aligned_cols=102 Identities=20% Similarity=0.172 Sum_probs=69.5
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeE---------EEcCccCCCC--CCCcCCCeEEEEccCcccCCC--
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI---------WVLGGKPGTK--GSGVPGKRVGYMPQEIALYGE-- 80 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i---------~~~g~~~~~~--~~~~~~~~ig~v~Q~~~~~~~-- 80 (125)
.+++||++||+||||||||||+++|+|+++|++|++ .++|.++... ........+++++|....++.
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 122 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAV 122 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhh
Confidence 468999999999999999999999999999999995 2444332110 000112357899987544332
Q ss_pred -CCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 81 -FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 81 -~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.++.+++.. .. ..+++.++++.++|+. .++.+.+|
T Consensus 123 ~~~v~e~~~~----~~-----~~~~~~~~l~~lgl~~~~~~~~~~L 159 (538)
T 1yqt_A 123 KGKVIELLKK----AD-----ETGKLEEVVKALELENVLEREIQHL 159 (538)
T ss_dssp CSBHHHHHHH----HC-----SSSCHHHHHHHTTCTTTTTSBGGGC
T ss_pred hccHHHHHhh----hh-----HHHHHHHHHHHcCCChhhhCChhhC
Confidence 378887652 11 1235677899999975 46666655
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.63 E-value=5.4e-16 Score=124.81 Aligned_cols=95 Identities=21% Similarity=0.221 Sum_probs=69.0
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHH
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGW 92 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~ 92 (125)
+.+.+||++||+||||||||||+++|+|+.+|++|+. + ....++|++|+.......||.+++...
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~-------~~~~i~~~~q~~~~~~~~tv~e~~~~~-- 437 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------I-------PKLNVSMKPQKIAPKFPGTVRQLFFKK-- 437 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------C-------CSCCEEEECSSCCCCCCSBHHHHHHHH--
T ss_pred CccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------c-------cCCcEEEecccccccCCccHHHHHHHH--
Confidence 3456779999999999999999999999999999862 1 124699999998766677999987532
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 93 IFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
...... ..+.+.++++.++|.+ .++.+.+|
T Consensus 438 ~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~L 468 (608)
T 3j16_B 438 IRGQFL--NPQFQTDVVKPLRIDDIIDQEVQHL 468 (608)
T ss_dssp CSSTTT--SHHHHHHTHHHHTSTTTSSSBSSSC
T ss_pred hhcccc--cHHHHHHHHHHcCChhhhcCChhhC
Confidence 121111 1234667888888865 45665554
No 58
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.62 E-value=2.3e-17 Score=132.76 Aligned_cols=101 Identities=21% Similarity=0.178 Sum_probs=69.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeE---------EEcCccCCCCC--CCcCCCeEEEEccCcccCC---C
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI---------WVLGGKPGTKG--SGVPGKRVGYMPQEIALYG---E 80 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i---------~~~g~~~~~~~--~~~~~~~ig~v~Q~~~~~~---~ 80 (125)
+++||++||+|||||||||||++|+|+++|++|++ .++|.++.... .......+++++|....++ .
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 193 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVK 193 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhcc
Confidence 58999999999999999999999999999999995 34443321100 0011245788988753322 2
Q ss_pred CCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
.||.|++.. .. ..+++.++++.++|++ .++.+.+|
T Consensus 194 ~tv~e~l~~----~~-----~~~~~~~~L~~lgL~~~~~~~~~~L 229 (607)
T 3bk7_A 194 GKVRELLKK----VD-----EVGKFEEVVKELELENVLDRELHQL 229 (607)
T ss_dssp SBHHHHHHH----TC-----CSSCHHHHHHHTTCTTGGGSBGGGC
T ss_pred ccHHHHhhh----hH-----HHHHHHHHHHHcCCCchhCCChhhC
Confidence 389888753 11 1235677899999976 56766665
No 59
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.61 E-value=3.4e-17 Score=121.94 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=61.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-----Cc-CCCeEEEEccCcc-cCCCCCHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-----GV-PGKRVGYMPQEIA-LYGEFSIKETM 87 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-----~~-~~~~ig~v~Q~~~-~~~~~tv~e~l 87 (125)
.++|++++|+||||||||||+++|+|+++|++|+|.+.|.+...... .. .+..++|++|++. +++.+++.+++
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l 176 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 176 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHH
Confidence 46899999999999999999999999999999999999987643210 01 1236999999988 88889999999
Q ss_pred HHHH
Q psy340 88 MYFG 91 (125)
Q Consensus 88 ~~~~ 91 (125)
.+..
T Consensus 177 ~~~~ 180 (302)
T 3b9q_A 177 KRGK 180 (302)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 60
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.60 E-value=1.2e-16 Score=119.06 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=63.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCc------CCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGV------PGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~------~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++....... .+..++|++|++.++|..++.+++.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 369999999999999999999999999999999999998875432110 12358999999988888899999886
Q ss_pred HH
Q psy340 90 FG 91 (125)
Q Consensus 90 ~~ 91 (125)
..
T Consensus 180 ~~ 181 (304)
T 1rj9_A 180 MK 181 (304)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.59 E-value=6.3e-17 Score=126.58 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=60.9
Q ss_pred cccchhhh---hccccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCce-e-EEEcCccCCCCCCCcCCCeEEEEccCcc-
Q psy340 3 TNTNTKKK---KKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTG-E-IWVLGGKPGTKGSGVPGKRVGYMPQEIA- 76 (125)
Q Consensus 3 ~~~~~~~~---~~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G-~-i~~~g~~~~~~~~~~~~~~ig~v~Q~~~- 76 (125)
.++|+.|+ .+-.+++|++++|+||||||||||+|+|+|+..|++| + |.++|. .++.++|+||+..
T Consensus 120 ~~~nl~~~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~~i~~vpq~~~l 190 (460)
T 2npi_A 120 YIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQPIFTVPGCISA 190 (460)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTSCSSSCSSCCEE
T ss_pred hhhhhhehhhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccCCeeeeccchhh
Confidence 34555553 3445589999999999999999999999999999999 9 999871 2467899999874
Q ss_pred --cCCCCCHHHHH
Q psy340 77 --LYGEFSIKETM 87 (125)
Q Consensus 77 --~~~~~tv~e~l 87 (125)
.++.+++.||+
T Consensus 191 ~~~~~~~tv~eni 203 (460)
T 2npi_A 191 TPISDILDAQLPT 203 (460)
T ss_dssp EECCSCCCTTCTT
T ss_pred cccccccchhhhh
Confidence 34567888887
No 62
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.58 E-value=1.3e-16 Score=126.77 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=62.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeE-----------EEcCccCCCCCC--CcCCCeEEEEccCccc---CC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI-----------WVLGGKPGTKGS--GVPGKRVGYMPQEIAL---YG 79 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i-----------~~~g~~~~~~~~--~~~~~~ig~v~Q~~~~---~~ 79 (125)
++||++||+||||||||||+++|+|+++|++|+| .++|.++..... ......+..+.|.... +.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFL 102 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhc
Confidence 7999999999999999999999999999999998 455554321000 0011224444443221 12
Q ss_pred CCCHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCc-cchhhhhc
Q psy340 80 EFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124 (125)
Q Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~L 124 (125)
..++.+++... . ..+++.++++.+++.. .++.+.+|
T Consensus 103 ~~~v~~~l~~~----~-----~~~~~~~~l~~l~l~~~~~~~~~~L 139 (538)
T 3ozx_A 103 KGTVNEILTKI----D-----ERGKKDEVKELLNMTNLWNKDANIL 139 (538)
T ss_dssp CSBHHHHHHHH----C-----CSSCHHHHHHHTTCGGGTTSBGGGC
T ss_pred cCcHHHHhhcc----h-----hHHHHHHHHHHcCCchhhcCChhhC
Confidence 33677654321 1 1234667888889865 46666654
No 63
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.57 E-value=3e-16 Score=117.19 Aligned_cols=101 Identities=19% Similarity=0.161 Sum_probs=58.7
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEE---cCccCCCCCCCcCCCeEEEEccCcccCC----CCCHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWV---LGGKPGTKGSGVPGKRVGYMPQEIALYG----EFSIKET 86 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~ig~v~Q~~~~~~----~~tv~e~ 86 (125)
.+.+|++++|+||||||||||+|+|+|...|.+|+|.+ +|...+... ......++|++|.|.+.. .+++ |+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HH
Confidence 34679999999999999999999999999999999998 676554322 111112799999987665 6788 88
Q ss_pred HH--HHH-H-H------hC-CChHHHHHHHHHHHHhCCCCc
Q psy340 87 MM--YFG-W-I------FG-METPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 87 l~--~~~-~-~------~~-~~~~~~~~~~~~~l~~~~L~~ 116 (125)
+. |.. . + ++ ....+...++.++++.++|..
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 83 221 1 1 12 122333456888999999975
No 64
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.57 E-value=5.4e-16 Score=117.90 Aligned_cols=92 Identities=18% Similarity=0.269 Sum_probs=65.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-CCceeEEEc-CccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR-LNTGEIWVL-GGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~-~~~G~i~~~-g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~ 93 (125)
.+|++++|+||||||||||+++|+|... |.+|+|.+. |..... .....+++++|+..+++..++.++. +
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t----t~~~~i~~v~q~~~l~dtpgv~e~~-----l 283 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT----TTAARLYHFPHGGDVIDSPGVREFG-----L 283 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTCC-----C
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc----eEEEEEEEECCCCEecCcccHHHhh-----h
Confidence 4799999999999999999999999999 999999886 543211 2346799999998888888888841 2
Q ss_pred hCCChHHHHHHHHHHHHhCCCCc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLPS 116 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~~ 116 (125)
++.+..+..+.+.++++.+++..
T Consensus 284 ~~l~~~e~~~~~~e~l~~~gl~~ 306 (358)
T 2rcn_A 284 WHLEPEQITQGFVEFHDYLGHCK 306 (358)
T ss_dssp CCCCHHHHHHTSGGGGGGTTCSS
T ss_pred cCCCHHHHHHHHHHHHHHcCCch
Confidence 34455666677888888888854
No 65
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.56 E-value=1.1e-17 Score=119.46 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=51.3
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcC--CceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRL--NTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSI 83 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv 83 (125)
.++|++++|+||||||||||+++|+|+.+| ..|.|.+.+.++.. ..+..++|+||++..|+.+++
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~ 79 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMIS 79 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHh
Confidence 378999999999999999999999999986 68999887755422 123568999998877766666
No 66
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.56 E-value=1.8e-16 Score=120.58 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=63.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC----Cc--CCCeEEEEccCcc-cCCCCCHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS----GV--PGKRVGYMPQEIA-LYGEFSIKETM 87 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~----~~--~~~~ig~v~Q~~~-~~~~~tv~e~l 87 (125)
.++|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... .. .+..++|++|++. +++.+++.+++
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l 233 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 233 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHH
Confidence 46899999999999999999999999999999999999987643210 00 1246999999988 88889999999
Q ss_pred HHHH
Q psy340 88 MYFG 91 (125)
Q Consensus 88 ~~~~ 91 (125)
.+..
T Consensus 234 ~~~~ 237 (359)
T 2og2_A 234 KRGK 237 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 67
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.56 E-value=2.7e-16 Score=117.59 Aligned_cols=80 Identities=14% Similarity=0.081 Sum_probs=60.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIF 94 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~ 94 (125)
.++|+++||+||||||||||+++|+|+++|..|. ..++||+|++.+++. |+.|++.+.. .+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~ 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPN-AELQRRNLMH-RK 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcc-cHHHHHHHHH-hc
Confidence 6789999999999999999999999999886442 458999999888887 9999986521 12
Q ss_pred CCChHHHHHHHHHHHHhCC
Q psy340 95 GMETPEIDDRLQFLLNFLD 113 (125)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~ 113 (125)
+.+.....+.+.++++.++
T Consensus 148 g~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 148 GFPESYNRRALMRFVTSVK 166 (312)
T ss_dssp TSGGGBCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhC
Confidence 3333333455666666665
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.56 E-value=7.8e-17 Score=114.26 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=43.3
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~ 75 (125)
+++||+++|+||||||||||+++|+|+ +|++|+|... ++... ....++.+||+||++
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~--~~~~~-~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRI--ILTRP-AVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEE--EEEEC-SCCTTCCCCSSCC--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeE--EecCC-chhhhcceEEecCCH
Confidence 478999999999999999999999999 9999999431 11111 112356799999986
No 69
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.54 E-value=1.5e-14 Score=109.87 Aligned_cols=77 Identities=13% Similarity=0.030 Sum_probs=56.5
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEc-cCccc--CCCCCHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP-QEIAL--YGEFSIKETMMYF 90 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~-Q~~~~--~~~~tv~e~l~~~ 90 (125)
.+++|++++|+||||||||||+++|+|+++|++|.|.++|..... ....+..++|++ |++.. +...|+.+++...
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~--~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~ 248 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELF--LPDHPNHVHLFYPSEAKEEENAPVTAATLLRSC 248 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCC--CTTCSSEEEEECC----------CCHHHHHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccC--ccccCCEEEEeecCccccccccccCHHHHHHHH
Confidence 347899999999999999999999999999999999998743211 112346799999 77643 4778999999875
Q ss_pred HH
Q psy340 91 GW 92 (125)
Q Consensus 91 ~~ 92 (125)
..
T Consensus 249 l~ 250 (361)
T 2gza_A 249 LR 250 (361)
T ss_dssp TT
T ss_pred Hh
Confidence 43
No 70
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.53 E-value=5.7e-16 Score=120.51 Aligned_cols=78 Identities=14% Similarity=0.122 Sum_probs=62.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCc---cCCCCC-----CCcCCCeEEEEccC-cccCCCCCHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG---KPGTKG-----SGVPGKRVGYMPQE-IALYGEFSIKE 85 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~---~~~~~~-----~~~~~~~ig~v~Q~-~~~~~~~tv~e 85 (125)
+.+|++++|+||||||||||+++|+|+.+|++|.|.+.|+ ++.... ....++.++|++|+ ..+++.+++.+
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~ 233 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAA 233 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHH
Confidence 3899999999999999999999999999999999999987 332100 01134679999995 46678889999
Q ss_pred HHHHHHH
Q psy340 86 TMMYFGW 92 (125)
Q Consensus 86 ~l~~~~~ 92 (125)
++.+.+.
T Consensus 234 ~~~~~ae 240 (438)
T 2dpy_A 234 YATRIAE 240 (438)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887554
No 71
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.52 E-value=1e-15 Score=115.20 Aligned_cols=76 Identities=12% Similarity=0.032 Sum_probs=62.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCc------CCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGV------PGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~------~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
++|++++|+||||||||||+++|+|+++|++|+|.+.|.++....... .+..+.|++|...++|.+++.+++.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 579999999999999999999999999999999999998865432110 11246699999999999999999987
Q ss_pred HH
Q psy340 90 FG 91 (125)
Q Consensus 90 ~~ 91 (125)
..
T Consensus 207 ~~ 208 (328)
T 3e70_C 207 AK 208 (328)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 72
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.52 E-value=6.5e-16 Score=121.56 Aligned_cols=77 Identities=13% Similarity=0.086 Sum_probs=63.2
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC-----CCc-CCCeEEEEccCcccCCCCCHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG-----SGV-PGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~-----~~~-~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
+.+|++++|+|+||||||||+++|+|++.+++|+|.+.+.+..... ... .++.++|++|+..+++.+++.+++.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999877654311 000 1346899999988888889999998
Q ss_pred HHH
Q psy340 89 YFG 91 (125)
Q Consensus 89 ~~~ 91 (125)
+..
T Consensus 370 ~a~ 372 (503)
T 2yhs_A 370 AAK 372 (503)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 73
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.51 E-value=7.3e-17 Score=112.31 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=49.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETM 87 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l 87 (125)
.+|++++|+||||||||||+++|+|+.+ .+.+.+.+............++|+||++..++.+++.+++
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 5799999999999999999999999964 5677665544332222245689999988766665554443
No 74
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.51 E-value=6.9e-15 Score=119.23 Aligned_cols=105 Identities=23% Similarity=0.214 Sum_probs=46.9
Q ss_pred cCCCcEEEEECCCCCCHHHHH---------------------HHHhCCCcCC-------ceeEEEcCccCCCCCCCcCCC
Q psy340 15 KKKKKKYGLLGASGCGKTTLL---------------------SCIVGRRRLN-------TGEIWVLGGKPGTKGSGVPGK 66 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL---------------------~~i~g~~~~~-------~G~i~~~g~~~~~~~~~~~~~ 66 (125)
+++||++||+||||||||||+ +++.|+..|+ .+.|.+++.+... ..+.
T Consensus 41 i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~----~~~~ 116 (670)
T 3ux8_A 41 IPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSR----NPRS 116 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC---------CC
T ss_pred ECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhc----cchh
Confidence 389999999999999999998 8999998888 4455565544322 1223
Q ss_pred eEEEEccCcc-------------------cCCCCCHHHHHHHHHHHhC--CCh-------HHHHHHHHHHHHhCCCCc--
Q psy340 67 RVGYMPQEIA-------------------LYGEFSIKETMMYFGWIFG--MET-------PEIDDRLQFLLNFLDLPS-- 116 (125)
Q Consensus 67 ~ig~v~Q~~~-------------------~~~~~tv~e~l~~~~~~~~--~~~-------~~~~~~~~~~l~~~~L~~-- 116 (125)
.+++|+|.+. .++.+||.||+.+...... ... .+..+ ...+++.++|.+
T Consensus 117 ~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~gL~~~~ 195 (670)
T 3ux8_A 117 TVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRD-RLGFLQNVGLDYLT 195 (670)
T ss_dssp BHHHHTTCC-------------------------CC--------------------------CHH-HHHHHHHTTCTTCC
T ss_pred ceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHH-HHHHHHHcCCchhh
Confidence 4555555432 2467899999887432211 000 01111 224588899864
Q ss_pred cchhhhhc
Q psy340 117 QSRLVKNL 124 (125)
Q Consensus 117 ~~~~~~~L 124 (125)
.++.+.+|
T Consensus 196 ~~~~~~~L 203 (670)
T 3ux8_A 196 LSRSAGTL 203 (670)
T ss_dssp TTCBGGGS
T ss_pred hcCCcccC
Confidence 35666654
No 75
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.50 E-value=1.8e-15 Score=107.41 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=46.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC-CcCCCeEEEEccCcccCCC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYMPQEIALYGE 80 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ig~v~Q~~~~~~~ 80 (125)
+++|++++|+||||||||||+++|+|+. | |+|.+ |.+...... ...+..++|+||++.+|+.
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 5789999999999999999999999988 5 99999 766533211 1123578999998765543
No 76
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.50 E-value=1.3e-14 Score=121.71 Aligned_cols=64 Identities=20% Similarity=0.373 Sum_probs=54.3
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcc----cCCCCCHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA----LYGEFSIKETMMY 89 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~----~~~~~tv~e~l~~ 89 (125)
+++|+++||+||||||||||+++|+|+++|++|+|.+++. ..++|++|++. .....|+.+++.+
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~ 763 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIAYIKQHAFAHIESHLDKTPSEYIQW 763 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEEEECHHHHHHGGGCTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceEeeccchhhhhhcccccCHHHHHHH
Confidence 3899999999999999999999999999999999998641 25899999863 1235689998876
No 77
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.49 E-value=2.2e-15 Score=121.20 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=51.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcC-CceeEEEcCccCCC---CCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRL-NTGEIWVLGGKPGT---KGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~-~~G~i~~~g~~~~~---~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
.+||+|||||||||||++|+|+..| ++|.|+++|.++.. ......+..++|++|++.+++.++|.+++.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~ 122 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ 122 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHH
Confidence 4999999999999999999999988 79999999977421 111234568999999999999999999998753
No 78
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.47 E-value=5.9e-15 Score=101.66 Aligned_cols=70 Identities=14% Similarity=0.093 Sum_probs=53.0
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
+++|++++|+||||||||||+++|++. +..|.|.+++.++..... .+..++|++|... +..++.+++.+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~--~~~~v~~~l~~~ 75 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ--QNRMIMQIAADV 75 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH--HHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh--hhHHHHHHHHHH
Confidence 578999999999999999999999998 678999998876432211 1234677877643 356788887654
No 79
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.2e-15 Score=121.32 Aligned_cols=35 Identities=31% Similarity=0.633 Sum_probs=33.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeE
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI 49 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i 49 (125)
+++||++||+|||||||||||++|+|+++|++|+|
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 36899999999999999999999999999999998
No 80
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.45 E-value=5.5e-14 Score=117.86 Aligned_cols=89 Identities=22% Similarity=0.382 Sum_probs=64.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc-ccCCCCCHHHHHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI-ALYGEFSIKETMMYFGWI 93 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~-~~~~~~tv~e~l~~~~~~ 93 (125)
+++|++++|+||||||||||+++|+| |+| +|.+.. ....++|++|++ .+++.+||.|++.+ ..
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~------~~~~~~~v~q~~~~~~~~ltv~e~l~~--~~ 521 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ------EECRTVYVEHDIDGTHSDTSVLDFVFE--SG 521 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT------TTSCEEETTCCCCCCCTTSBHHHHHHT--TC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc------cceeEEEEcccccccccCCcHHHHHHH--hh
Confidence 48999999999999999999999995 433 332221 112478999985 67889999999975 11
Q ss_pred hCCChHHHHHHHHHHHHhCCCC-c-cchhhhhc
Q psy340 94 FGMETPEIDDRLQFLLNFLDLP-S-QSRLVKNL 124 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~-~-~~~~~~~L 124 (125)
.+. .+++.++++.+||+ . .++.+.+|
T Consensus 522 ~~~-----~~~v~~~L~~lgL~~~~~~~~~~~L 549 (986)
T 2iw3_A 522 VGT-----KEAIKDKLIEFGFTDEMIAMPISAL 549 (986)
T ss_dssp SSC-----HHHHHHHHHHTTCCHHHHHSBGGGC
T ss_pred cCH-----HHHHHHHHHHcCCChhhhcCCcccC
Confidence 221 56788899999995 3 45666554
No 81
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.43 E-value=1.7e-14 Score=107.33 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=60.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc--CCceeEEE---cCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR--LNTGEIWV---LGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~--~~~G~i~~---~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
.+|+++||+||||||||||+++|+|++. |++|+|.+ +|..... ..++.++++ |...+++.+++.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~----~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPN----QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH----HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcH----HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 7899999999999999999999999988 99999999 7755311 112457888 777778889999999886
Q ss_pred HHHh
Q psy340 91 GWIF 94 (125)
Q Consensus 91 ~~~~ 94 (125)
..+.
T Consensus 153 ~~l~ 156 (308)
T 1sq5_A 153 SDLK 156 (308)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6554
No 82
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.43 E-value=3.4e-14 Score=102.18 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=49.4
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
.+++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|+. +++.+++.+++.+..
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~-~~~~l~~~~~~~~~~ 83 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDR-FYKVLTAEQKAKALK 83 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGG-GBCCCCHHHHHHHHT
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCc-CccccCHhHhhhhhc
Confidence 34789999999999999999999999976 434332 1246799999984 778899999987643
No 83
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.42 E-value=6.9e-14 Score=97.84 Aligned_cols=75 Identities=19% Similarity=0.100 Sum_probs=52.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccC--CCCCHHHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALY--GEFSIKETMMYFGWI 93 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~--~~~tv~e~l~~~~~~ 93 (125)
++|+++||+||||||||||+++|+|++.| .++|++|++.++ ..+++.++..+..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 57899999999999999999999998764 478999987665 5678888765421
Q ss_pred hCCChHHHHHHHHHHHHhCCCC
Q psy340 94 FGMETPEIDDRLQFLLNFLDLP 115 (125)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~L~ 115 (125)
+.+.....+++.++++.+++.
T Consensus 60 -~~~~~~~~~~~~~~l~~~~~~ 80 (211)
T 3asz_A 60 -DHPDAFDLALYLEHAQALLRG 80 (211)
T ss_dssp -TSGGGBCHHHHHHHHHHHHTT
T ss_pred -CChhhhhHHHHHHHHHHHHcC
Confidence 111111234455556655553
No 84
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.40 E-value=1.6e-14 Score=111.63 Aligned_cols=60 Identities=10% Similarity=-0.011 Sum_probs=46.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
++||+||||||||||+|+|+|+.+|++|+|.++|.+.. + .+|++|++ .++.+++.|++.+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~--~~~v~q~~-~~~~ltv~D~~g~ 130 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M--ERHPYKHP-NIPNVVFWDLPGI 130 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C--CCEEEECS-SCTTEEEEECCCG
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e--eEEecccc-ccCCeeehHhhcc
Confidence 99999999999999999999999999999998775431 1 16788874 4666677666543
No 85
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.40 E-value=2.4e-15 Score=105.90 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=52.5
Q ss_pred hccccCCCcEEEEECCCCCCHHHHHHHHhCCCcC-------CceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCH
Q psy340 11 KKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRL-------NTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSI 83 (125)
Q Consensus 11 ~~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-------~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv 83 (125)
-.+-+++|++++|+||||||||||+++|+|...+ ..+.+++++.+.. ....+++++|...+++. ++
T Consensus 18 l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~------~~~~i~~~~~~~~~~~~-~~ 90 (231)
T 4a74_A 18 LGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLDPD-EV 90 (231)
T ss_dssp TTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC------CHHHHHHHHHHTTSCHH-HH
T ss_pred hcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC------CHHHHHHHHHHcCCCHH-HH
Confidence 3456799999999999999999999999995544 4457788765421 12457788887766654 67
Q ss_pred HHHHHH
Q psy340 84 KETMMY 89 (125)
Q Consensus 84 ~e~l~~ 89 (125)
.+++.+
T Consensus 91 ~~~~~~ 96 (231)
T 4a74_A 91 LKHIYV 96 (231)
T ss_dssp HHTEEE
T ss_pred hhcEEE
Confidence 776554
No 86
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.38 E-value=3.3e-14 Score=99.33 Aligned_cols=54 Identities=26% Similarity=0.323 Sum_probs=44.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~ 75 (125)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.... ...++.+||++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec
Confidence 78999999999999999999999998 899 98888665321 12357899999973
No 87
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.37 E-value=4.7e-14 Score=106.29 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=54.2
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC----CcCCCeEEEEccCcccCC
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS----GVPGKRVGYMPQEIALYG 79 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~----~~~~~~ig~v~Q~~~~~~ 79 (125)
...+|++++|+||||||||||+++|+|++.|++|+|.+.+.++..... ...+..+++++|++.++.
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 358999999999999999999999999999999999999877643211 123457899999987765
No 88
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.37 E-value=8e-13 Score=99.34 Aligned_cols=70 Identities=14% Similarity=0.047 Sum_probs=53.5
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+.... ...+..++++++ ...+.+..++..
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~--~~~~~~i~~~~g-----gg~~~r~~la~a 236 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF--KHHKNYTQLFFG-----GNITSADCLKSC 236 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC--SSCSSEEEEECB-----TTBCHHHHHHHH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc--ccchhEEEEEeC-----CChhHHHHHHHH
Confidence 3478999999999999999999999999999999999998653221 113467888865 345566666543
No 89
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.34 E-value=3.4e-13 Score=106.00 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=39.7
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT 58 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~ 58 (125)
+++ ++++|+|||||||||||++|+|+.+|++|+|.++|.++..
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 377 9999999999999999999999999999999999987653
No 90
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.34 E-value=5.5e-14 Score=108.96 Aligned_cols=72 Identities=21% Similarity=0.206 Sum_probs=48.0
Q ss_pred hccccCCCcE--EEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHH
Q psy340 11 KKKKKKKKKK--YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMM 88 (125)
Q Consensus 11 ~~~~~~~Ge~--~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~ 88 (125)
.+..+++|++ ++|+||||||||||+++|+|+. ++|.++.........+.++|++|++.+++.+||.|++.
T Consensus 33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~ 104 (427)
T 2qag_B 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVG 104 (427)
T ss_dssp HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEEC
T ss_pred CceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhh
Confidence 3455689999 9999999999999999999984 22322221111112347999999988888888888876
Q ss_pred HH
Q psy340 89 YF 90 (125)
Q Consensus 89 ~~ 90 (125)
+.
T Consensus 105 ~g 106 (427)
T 2qag_B 105 FG 106 (427)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 91
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.34 E-value=2.5e-14 Score=102.71 Aligned_cols=56 Identities=18% Similarity=0.139 Sum_probs=38.6
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCC--------CCcCCCeEEEEccC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG--------SGVPGKRVGYMPQE 74 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~--------~~~~~~~ig~v~Q~ 74 (125)
++++|+|||||||||||++|+|++.|++|+|.++|.++.... ....+..++|++|+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 789999999999999999999999999999999987763211 11124579999974
No 92
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.31 E-value=1.4e-13 Score=102.73 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=33.2
Q ss_pred ccccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEE
Q psy340 12 KKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWV 51 (125)
Q Consensus 12 ~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~ 51 (125)
+-.+++|++++|+||||||||||+++|+|++ +|+|..
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~ 156 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLS 156 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEEC
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEE
Confidence 3456999999999999999999999999998 899854
No 93
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.31 E-value=4.1e-13 Score=97.97 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=45.0
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCC-ceeEEEcCccCCCCCCCcCCCeEEEEcc
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLN-TGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~ig~v~Q 73 (125)
+++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... ....+++++|
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~----~~~~~~~v~q 77 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV----FKHKKSIVNQ 77 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC----CCCSSSEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee----cCCcceeeeH
Confidence 6899999999999999999999999999987 99999988765432 1223456666
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.29 E-value=4.7e-14 Score=111.52 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=49.0
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHH--HhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcc
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSC--IVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA 76 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~--i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~ 76 (125)
.+++|++++|+||||||||||+++ ++|+.+|++|.|+++|.+.... .....+.+||++|++.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~-~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQD-IIKNARSFGWDLAKLV 98 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHH-HHHHHGGGTCCHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHH-HHHHHHHcCCChHHhh
Confidence 668999999999999999999999 7899999999999998763111 0112346788888753
No 95
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.28 E-value=7.5e-13 Score=102.44 Aligned_cols=75 Identities=17% Similarity=0.114 Sum_probs=55.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCC----cCCCeEEEEc---------cCccc--CCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG----VPGKRVGYMP---------QEIAL--YGE 80 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~----~~~~~ig~v~---------Q~~~~--~~~ 80 (125)
.+|++++|+|||||||||||++|+|++.|.+|.|.+.+.++...... .....+++.| |++.. +..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE 244 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE 244 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence 68999999999999999999999999999999999988765422110 1223455655 88755 233
Q ss_pred ----CCHHHHHHHH
Q psy340 81 ----FSIKETMMYF 90 (125)
Q Consensus 81 ----~tv~e~l~~~ 90 (125)
.|+.+++.+.
T Consensus 245 iRd~et~~~~l~a~ 258 (418)
T 1p9r_A 245 IRDLETAQIAVQAS 258 (418)
T ss_dssp CCSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 5777877764
No 96
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.28 E-value=2e-13 Score=94.11 Aligned_cols=65 Identities=18% Similarity=0.119 Sum_probs=48.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
|++++|+||||||||||+++|++ +.+|.+++++.++... ..+++++|....++..++.+++.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH
Confidence 68999999999999999999987 5688999988654321 23466777654445567888877643
No 97
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.25 E-value=1.8e-12 Score=90.90 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=38.7
Q ss_pred hhccccCCCcEEEEECCCCCCHHHHHHHHhCCCcC---CceeEEEcCccC
Q psy340 10 KKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRL---NTGEIWVLGGKP 56 (125)
Q Consensus 10 ~~~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~---~~G~i~~~g~~~ 56 (125)
+...+.++|++++|+||||||||||+++|+|++.| ..|.|.++|...
T Consensus 14 ~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 14 RLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp HSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 33333678999999999999999999999999975 578888877543
No 98
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.24 E-value=8.2e-14 Score=100.04 Aligned_cols=70 Identities=26% Similarity=0.259 Sum_probs=54.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHh---CCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIV---GRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~---g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
++++++|+||||||||||+++|+ |+..++.|+|.+++.+... ..+..+++++|+..+++..++.+++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~v~~~l~~~ 98 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST----EVGEMAKQYIEKSLLVPDHVITRLMMSE 98 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC----HHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC----hHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999 9999999999887654211 1123455667777777878888888764
No 99
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.21 E-value=3.3e-12 Score=97.34 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=45.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCC-ceeEEEcCccCCCCCCCcCCCeEEEEcc
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLN-TGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~ig~v~Q 73 (125)
.++|++++|+||||||||||+++|+|+++|+ +|.|.+.+.++.. ..+..++||+|
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~----~~~~~~~~v~Q 188 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY----VFKHKKSIVNQ 188 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS----CCCCSSSEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh----hhccCceEEEe
Confidence 4789999999999999999999999999887 8999776654421 23456889998
No 100
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.21 E-value=5.5e-12 Score=89.60 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=45.0
Q ss_pred hhhccccCCCcEEEEECCCCCCHHHHHHHHh--CCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc
Q psy340 9 KKKKKKKKKKKKYGLLGASGCGKTTLLSCIV--GRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75 (125)
Q Consensus 9 ~~~~~~~~~Ge~~~liG~nGsGKSTLL~~i~--g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~ 75 (125)
..-.+.+++|++++|+||||||||||+++|+ |+..+..|.+++.+.+..... ....+.++|++|+.
T Consensus 21 ~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~ 88 (251)
T 2ehv_A 21 ELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDL-RREMASFGWDFEKY 88 (251)
T ss_dssp GGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHH-HHHHHTTTCCHHHH
T ss_pred HHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHH-HHHHHHcCCChHHH
Confidence 3344577999999999999999999999999 664566777777664422110 00113456666654
No 101
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.21 E-value=6.4e-12 Score=95.08 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=46.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCC------C-CCCcCCCeEEEEccCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT------K-GSGVPGKRVGYMPQEI 75 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~------~-~~~~~~~~ig~v~Q~~ 75 (125)
.+|++++|+||||||||||+++|+|+..|+.|.|.+.|++... . ......+.+.+++|..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 7999999999999999999999999999999999988854110 0 0001235688888753
No 102
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.21 E-value=2.2e-13 Score=94.99 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=52.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFG 91 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~ 91 (125)
++|++++|+||||||||||+++|++.+ |.+.+++.++.... ......+++++|+...++.+++.+++....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 97 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDEDRWPWLRSLAEWMDAR 97 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCcccccHHHHHHHHHHHH
Confidence 579999999999999999999999977 88999887653210 011124688888877667777777776543
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.21 E-value=1.1e-12 Score=90.68 Aligned_cols=51 Identities=29% Similarity=0.272 Sum_probs=33.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~ 75 (125)
+++|+||||||||||+++|+|++. |.++|.+.........++.+||++|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC
Confidence 689999999999999999999985 334443221110001245789999864
No 104
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.17 E-value=4e-12 Score=103.05 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.7
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIV 39 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~ 39 (125)
+++||++||+||||||||||+++|+
T Consensus 345 I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3899999999999999999998764
No 105
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.16 E-value=1.1e-12 Score=94.83 Aligned_cols=59 Identities=20% Similarity=0.150 Sum_probs=46.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHh---CCCcCCceeEE--------EcCccCCCCC-CCcCCCeEEEEccC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIV---GRRRLNTGEIW--------VLGGKPGTKG-SGVPGKRVGYMPQE 74 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~---g~~~~~~G~i~--------~~g~~~~~~~-~~~~~~~ig~v~Q~ 74 (125)
.+|++++|+|||||||||++++|+ |+..+++|.++ .+|.++.... ....+..+++++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 578999999999999999999999 99999999998 7776653211 11223467888864
No 106
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.16 E-value=8.7e-11 Score=92.91 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=37.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCcc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~ 55 (125)
++|++++|+|||||||||||++|+|+++|++|.|.++|..
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 6899999999999999999999999999999999998754
No 107
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.15 E-value=6.4e-13 Score=91.51 Aligned_cols=60 Identities=15% Similarity=0.058 Sum_probs=40.8
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCC---ceeEEEcCccCCCCC---CCcCC-CeEE----EEccCcccC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRRLN---TGEIWVLGGKPGTKG---SGVPG-KRVG----YMPQEIALY 78 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~~~---~G~i~~~g~~~~~~~---~~~~~-~~ig----~v~Q~~~~~ 78 (125)
++++|+|+||||||||+++|+|++.|+ .|.|.++|.++.... ....+ +.+| +++|++.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~ 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence 589999999999999999999999988 899999987643321 11222 2455 788876544
No 108
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.14 E-value=1.2e-11 Score=85.27 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=26.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCce
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRRLNTG 47 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G 47 (125)
|++++|+||||||||||+++|+|+.++..|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 578999999999999999999999874433
No 109
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.13 E-value=4.4e-12 Score=96.91 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=47.0
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCc--------------------------------------CCceeEEEcCccC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRR--------------------------------------LNTGEIWVLGGKP 56 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~--------------------------------------~~~G~i~~~g~~~ 56 (125)
+.+| +++|+|||||||||||++|.++.. +..|.+.++|.++
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~i~ing~~~ 136 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVV 136 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEEEEETTEEE
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceEEEECCEEC
Confidence 4889 999999999999999999977653 4478899998775
Q ss_pred CCCCC-CcCCCeEEEEccCcccCC
Q psy340 57 GTKGS-GVPGKRVGYMPQEIALYG 79 (125)
Q Consensus 57 ~~~~~-~~~~~~ig~v~Q~~~~~~ 79 (125)
..... ......+++++|+..++.
T Consensus 137 ~~~~~~~~~~~~i~~~~q~~~l~l 160 (415)
T 4aby_A 137 SVRELQEWAQGRLTIHWQHSAVSL 160 (415)
T ss_dssp CHHHHHHHHTTTEEEETTTCTTTT
T ss_pred CHHHHHHHHhhceEEecCcccccc
Confidence 42111 112234899999876544
No 110
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.13 E-value=1.1e-11 Score=86.49 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=23.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3689999999999999999999999864
No 111
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.13 E-value=1.3e-11 Score=84.37 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=29.3
Q ss_pred ccCCCcEEEEECCCCCCHHHHHH------------HHhCCCcCCceeEEE
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLS------------CIVGRRRLNTGEIWV 51 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~------------~i~g~~~~~~G~i~~ 51 (125)
.+++||+++|+||||||||||++ .+.|+..++.|.+.+
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~ 54 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTV 54 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhh
Confidence 35789999999999999999999 555555555554443
No 112
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.11 E-value=6.3e-13 Score=99.23 Aligned_cols=70 Identities=21% Similarity=0.122 Sum_probs=50.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC--------cCCceeEEEcCccCCCCCC---------------CcCCCeEEEE---c
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR--------RLNTGEIWVLGGKPGTKGS---------------GVPGKRVGYM---P 72 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~--------~~~~G~i~~~g~~~~~~~~---------------~~~~~~ig~v---~ 72 (125)
++++|+|+|||||||||++|.|+. .|+.|+|.++|.++..... ....+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999987 7899999999876643211 1112346766 5
Q ss_pred cCcccCCCCCHHHHHH
Q psy340 73 QEIALYGEFSIKETMM 88 (125)
Q Consensus 73 Q~~~~~~~~tv~e~l~ 88 (125)
|+..+++..++.|+..
T Consensus 85 q~~~~~~~~~v~E~~~ 100 (318)
T 1nij_A 85 DKGNIQFDRLVIECTG 100 (318)
T ss_dssp HHTSCCCSEEEEEEET
T ss_pred hcCCCCCCEEEEeCCC
Confidence 6655555555555543
No 113
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.10 E-value=1.5e-12 Score=98.68 Aligned_cols=39 Identities=21% Similarity=0.407 Sum_probs=35.3
Q ss_pred ccCC--CcEEEEECCCCCCHHHHHHHHhCCCcCCc----eeEEEc
Q psy340 14 KKKK--KKKYGLLGASGCGKTTLLSCIVGRRRLNT----GEIWVL 52 (125)
Q Consensus 14 ~~~~--Ge~~~liG~nGsGKSTLL~~i~g~~~~~~----G~i~~~ 52 (125)
.+.+ |+.++|+||||||||||+++|+|++.|++ |++.++
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF 208 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 3467 99999999999999999999999999999 888774
No 114
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.08 E-value=4.4e-11 Score=90.80 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=47.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCC-ceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN-TGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
.+|++++|+|||||||||||++|+|+++|+ .|.|...+.++... .....+++.|........+..+.+.-
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~----~~~~~~~v~q~~~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV----HESKKCLVNQREVHRDTLGFSEALRS 191 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC----CCCSSSEEEEEEBTTTBSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh----hhccccceeeeeeccccCCHHHHHHH
Confidence 678899999999999999999999999887 56665433332211 12334667765544445666665543
No 115
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.07 E-value=6e-12 Score=93.38 Aligned_cols=66 Identities=18% Similarity=0.098 Sum_probs=32.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC-CcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR-RRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~-~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
.++|+||||||||||+++|.|. ..|++| +.++|.++... . ....+++++|.......+++.|+..+
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t-~--~~~~~~~~~q~~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT-V--QIEASTVEIEERGVKLRLTVVDTPGY 86 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc-c--eEeeEEEEecCCCcccCcchhhhhhh
Confidence 3589999999999999999998 888899 88777655331 1 12457899988766666677666554
No 116
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.07 E-value=9e-12 Score=96.41 Aligned_cols=86 Identities=19% Similarity=0.117 Sum_probs=45.6
Q ss_pred ccccchhhhhccccCCCcE---EEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccC
Q psy340 2 KTNTNTKKKKKKKKKKKKK---YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALY 78 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~Ge~---~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~ 78 (125)
+.+.|+.+.-.++.--..+ ++|+||||||||||+++|+|...+..|. .+....... ......+++++|++.++
T Consensus 12 l~~~~l~~~y~~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~~-t~~~~~i~~v~q~~~~~ 87 (418)
T 2qag_C 12 VGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIKK-TVQVEQSKVLIKEGGVQ 87 (418)
T ss_dssp ---CCCCCCTTTTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC------CCEEEEEECC------C
T ss_pred EEEEecceeECCEEEecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCcc-ceeeeeEEEEEecCCcc
Confidence 4456666554433222223 6999999999999999999998765551 222111111 11124689999988877
Q ss_pred CCCCHHHHHHHHH
Q psy340 79 GEFSIKETMMYFG 91 (125)
Q Consensus 79 ~~~tv~e~l~~~~ 91 (125)
+.+++.|++.+..
T Consensus 88 ~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 88 LLLTIVDTPGFGD 100 (418)
T ss_dssp EEEEEEECC----
T ss_pred cceeeeechhhhh
Confidence 7888888877643
No 117
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.07 E-value=3.3e-11 Score=85.53 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=21.4
Q ss_pred ccccCCCcEEEEECCCCCCHHHHHHHHh-CCCcC
Q psy340 12 KKKKKKKKKYGLLGASGCGKTTLLSCIV-GRRRL 44 (125)
Q Consensus 12 ~~~~~~Ge~~~liG~nGsGKSTLL~~i~-g~~~~ 44 (125)
+=.+++|++++|+||||||||||+++|+ |+.++
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 3345789999999999999999999999 99843
No 118
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.06 E-value=4.4e-12 Score=95.91 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=51.0
Q ss_pred ccccCCCcEEEEECCCCCCHHHHHHHHhCCC--cCCc----ee-EEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHH
Q psy340 12 KKKKKKKKKYGLLGASGCGKTTLLSCIVGRR--RLNT----GE-IWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIK 84 (125)
Q Consensus 12 ~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~--~~~~----G~-i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~ 84 (125)
...+++|++++|+||||||||||++++++.. +|++ |. |++++.+.. .++++++++|.+.+++. ++.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~~~-~v~ 197 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLDPD-EVL 197 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCCHH-HHG
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCCHH-HHh
Confidence 3566999999999999999999999999987 6666 67 888876531 13457777777655443 444
Q ss_pred HHH
Q psy340 85 ETM 87 (125)
Q Consensus 85 e~l 87 (125)
+|+
T Consensus 198 ~ni 200 (349)
T 1pzn_A 198 KHI 200 (349)
T ss_dssp GGE
T ss_pred hCE
Confidence 444
No 119
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.05 E-value=3.6e-12 Score=95.49 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=48.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC----cCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR----RLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~----~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
+.++|+||||+|||||+++|++.+ .+.+|.+..++.++...........|.|++|...+.+ ++.|++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~ 124 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYS 124 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHH
Confidence 789999999999999999999987 5667776654433211000112357999999876654 67777743
No 120
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.99 E-value=3.9e-12 Score=93.21 Aligned_cols=57 Identities=26% Similarity=0.237 Sum_probs=40.7
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccC
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQE 74 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~ 74 (125)
.+++| ++|+||||||||||+++|+|...+ +.|.++|.++.........+.++++||.
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~ 98 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQR 98 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHH
Confidence 34566 999999999999999999998876 7899988766432111112345666665
No 121
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.97 E-value=1.9e-10 Score=78.90 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=30.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcC-CceeEEE
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL-NTGEIWV 51 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-~~G~i~~ 51 (125)
.+|++++|+||||||||||+++|++..++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 46899999999999999999999998764 4566544
No 122
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.97 E-value=3.9e-10 Score=78.03 Aligned_cols=33 Identities=27% Similarity=0.211 Sum_probs=29.3
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCce
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTG 47 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G 47 (125)
+.+|++++|+|||||||||++++|++...|+.|
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 467999999999999999999999999877666
No 123
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.96 E-value=1.5e-10 Score=78.98 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=29.1
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeE
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI 49 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i 49 (125)
+.+| +++|+||||||||||+++|.+++.+..|..
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~ 57 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKA 57 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 3667 999999999999999999999887766543
No 124
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.96 E-value=1.6e-10 Score=84.68 Aligned_cols=42 Identities=14% Similarity=0.055 Sum_probs=36.8
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCce-eEEEcCc
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTG-EIWVLGG 54 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G-~i~~~g~ 54 (125)
..+++|++++|+||||||||||+++|+|...|.+| .|.+.+.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56799999999999999999999999999988878 6755443
No 125
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.95 E-value=8.5e-11 Score=81.79 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=36.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeE--EEcCccCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI--WVLGGKPG 57 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i--~~~g~~~~ 57 (125)
++|++++|+|||||||||+.++|++.+. ..|.+ ++++.++.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 7899999999999999999999999987 67887 88876653
No 126
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.94 E-value=2.1e-10 Score=95.26 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=24.6
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHH-HhCC
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSC-IVGR 41 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~-i~g~ 41 (125)
.+++|+++||+|+||||||||+++ |+|+
T Consensus 519 ~i~~Geiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 519 RFPLGVMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp EEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred EEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence 348999999999999999999996 6654
No 127
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.93 E-value=4e-10 Score=80.12 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=34.4
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccC
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~ 56 (125)
..++|++++|+|+||||||||+++|++. .|+|.+.+.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 3478999999999999999999999998 78898887653
No 128
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.92 E-value=2.2e-10 Score=80.17 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=37.8
Q ss_pred ccccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCcc
Q psy340 12 KKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55 (125)
Q Consensus 12 ~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~ 55 (125)
.+.+++|++++|+||||||||||+++|++...+..|.+.+.+.+
T Consensus 17 ~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 17 QGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp TTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 35678999999999999999999999999887778888776543
No 129
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.90 E-value=3.3e-10 Score=78.45 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=28.6
Q ss_pred ccccchhhhhc------cccCCCcEEEEECCCCCCHHHHHHHHhCCC-----cCCceeEEE
Q psy340 2 KTNTNTKKKKK------KKKKKKKKYGLLGASGCGKTTLLSCIVGRR-----RLNTGEIWV 51 (125)
Q Consensus 2 ~~~~~~~~~~~------~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~-----~~~~G~i~~ 51 (125)
+.++|++|.-. =...+|..++|+|+||||||||+++|+|.. .|+.|.+.+
T Consensus 4 l~~~~~~~~~~~~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 4 LNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp -------CEEEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred hhhhhhhheeecCCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 34555555432 134889999999999999999999999987 677776643
No 130
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.89 E-value=3.6e-10 Score=78.76 Aligned_cols=42 Identities=26% Similarity=0.221 Sum_probs=36.8
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCcc
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~ 55 (125)
...+|++++|+|+||||||||+++|++.+.+..|.|.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 357899999999999999999999999998888888876544
No 131
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.89 E-value=1.5e-09 Score=76.66 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=38.9
Q ss_pred hhhccccCCCcEEEEECCCCCCHHHHHHHHhC--CCcC-----CceeEEEcCcc
Q psy340 9 KKKKKKKKKKKKYGLLGASGCGKTTLLSCIVG--RRRL-----NTGEIWVLGGK 55 (125)
Q Consensus 9 ~~~~~~~~~Ge~~~liG~nGsGKSTLL~~i~g--~~~~-----~~G~i~~~g~~ 55 (125)
.--.+-+++|++++|+||||||||||++.|++ ..++ ..|.+++++.+
T Consensus 15 ~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 15 KLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp HHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred HhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 33446679999999999999999999999999 5554 57888888765
No 132
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.88 E-value=5.7e-10 Score=93.50 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.4
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHh
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIV 39 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~ 39 (125)
.++.|+++||+|+||||||||+++|+
T Consensus 646 ~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 646 KIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 34899999999999999999999864
No 133
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.88 E-value=1.1e-10 Score=96.11 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=39.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc-CCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRR-LNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
|++++|+||||||||||||+|+|+.. ++.|.+.- .....+++++| +++.+++.|++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a~~~~i~~v~~---i~~~~~~~d~l~~ 634 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------AEEAHLPLFDG---IYTRIGASDDLAG 634 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------SSEEEECCCSE---EEEECCC------
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------hhccceeeHHH---hhccCCHHHHHHh
Confidence 99999999999999999999999864 67776420 01245777776 4556677777654
No 134
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.85 E-value=2.3e-09 Score=82.33 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=36.9
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhC------------CCcCCceeEEEcC
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVG------------RRRLNTGEIWVLG 53 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g------------~~~~~~G~i~~~g 53 (125)
++..+|..++|+|+||||||||+++|+| ...|..|.+.+.|
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 4668999999999999999999999999 5678899998876
No 135
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.84 E-value=4.5e-10 Score=84.08 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=57.3
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCC----CcC-----CCeEEEE-ccCcccCCCCCHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS----GVP-----GKRVGYM-PQEIALYGEFSIK 84 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~----~~~-----~~~ig~v-~Q~~~~~~~~tv~ 84 (125)
..++++++|+|+||+||||++..|++.+.+..|+|.+.+.|...... ... +..+.++ +|.....+..++.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~ 181 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVF 181 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHH
Confidence 46799999999999999999999999998889999988777643210 001 3568999 7765556655677
Q ss_pred HHHHHH
Q psy340 85 ETMMYF 90 (125)
Q Consensus 85 e~l~~~ 90 (125)
+++...
T Consensus 182 ~~l~~~ 187 (320)
T 1zu4_A 182 DAIKKA 187 (320)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 136
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.83 E-value=1.9e-09 Score=74.11 Aligned_cols=36 Identities=39% Similarity=0.397 Sum_probs=31.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcC-----------CceeEEEcCcc
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRL-----------NTGEIWVLGGK 55 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~-----------~~G~i~~~g~~ 55 (125)
.++|+|+||||||||++.++|...+ .+|.|.++|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence 6899999999999999999998765 57899998854
No 137
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.83 E-value=2.5e-09 Score=74.86 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=29.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcC-CceeE
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL-NTGEI 49 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~-~~G~i 49 (125)
++|++++|+||||||||||++.|++.+++ ..+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~ 40 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSI 40 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEE
Confidence 57999999999999999999999999876 33333
No 138
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.82 E-value=1.4e-10 Score=86.53 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=23.3
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
+.+| +++|+||||||||||+.+|..+
T Consensus 22 ~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred cCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 3677 9999999999999999999954
No 139
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.82 E-value=1.3e-09 Score=73.76 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=32.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~ 56 (125)
.+|++++|+|+|||||||++++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 569999999999999999999999865 7788877654
No 140
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.82 E-value=1.9e-09 Score=75.76 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=26.8
Q ss_pred hhccccCCCcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 10 KKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 10 ~~~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
+-+....+|++++|+||||||||||++.|.+..+
T Consensus 11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445567899999999999999999999998764
No 141
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.82 E-value=1.5e-09 Score=72.79 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=34.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCce--eEEEcCccCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTG--EIWVLGGKPG 57 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G--~i~~~g~~~~ 57 (125)
+|+.++|+||||||||||+++|++...+ +| .+++++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhh
Confidence 7999999999999999999999999876 57 7788776543
No 142
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.81 E-value=2.9e-11 Score=88.10 Aligned_cols=71 Identities=23% Similarity=0.148 Sum_probs=49.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcc-cCCCCCHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA-LYGEFSIKETMMY 89 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~ 89 (125)
+++| ++|+||||||||||+++|++... .|.|.+++.++...........+++++|... ..+.+++.|++..
T Consensus 72 ~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~ 143 (278)
T 1iy2_A 72 IPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA 143 (278)
T ss_dssp CCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHH
T ss_pred CCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHh
Confidence 3556 89999999999999999999875 7889888765422111111235677888753 4566677777754
No 143
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.79 E-value=4.4e-11 Score=85.84 Aligned_cols=71 Identities=23% Similarity=0.148 Sum_probs=49.1
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcc-cCCCCCHHHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA-LYGEFSIKETMMY 89 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~ 89 (125)
+++| ++|+||||||||||+++|++... .|.+.+++.++.........+.+++++|... ..+.+.+.|++..
T Consensus 48 ~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~ 119 (254)
T 1ixz_A 48 IPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA 119 (254)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHH
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhh
Confidence 3556 99999999999999999999875 7889888755422111111234677888753 4556667777743
No 144
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.79 E-value=9.7e-10 Score=87.65 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=37.6
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCce-eEE-EcCccC
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTG-EIW-VLGGKP 56 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G-~i~-~~g~~~ 56 (125)
++.+|++++|+|+||||||||+++|++.+.|++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 4679999999999999999999999999999886 785 777543
No 145
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.76 E-value=1.8e-09 Score=90.80 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=23.4
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHh
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIV 39 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~ 39 (125)
.+++|+++||+|+||||||||+++|+
T Consensus 664 ~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 664 SFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 34899999999999999999999853
No 146
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.72 E-value=1.8e-08 Score=84.33 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.8
Q ss_pred cCCCcEEEEECCCCCCHHHHH
Q psy340 15 KKKKKKYGLLGASGCGKTTLL 35 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL 35 (125)
+++|+++||+||||||||||+
T Consensus 607 I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 607 IPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp EESSSEEEEECSTTSSHHHHH
T ss_pred EcCCcEEEEEccCCCChhhhH
Confidence 388999999999999999997
No 147
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.71 E-value=4.3e-09 Score=79.45 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=36.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPG 57 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~ 57 (125)
.++.+++|+|++|||||||++.|+|...+..|.|.+.+.++.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 568999999999999999999999998888888877766544
No 148
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.71 E-value=4.5e-09 Score=78.80 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=27.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCc--CCceeEEE
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRR--LNTGEIWV 51 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~--~~~G~i~~ 51 (125)
++||+||||||||||+++|++++. |.+|.+.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 999999999999999999999876 45666443
No 149
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.69 E-value=2.3e-09 Score=73.10 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=29.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCce
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTG 47 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G 47 (125)
.++|+.++|+||||+|||||+++|++...+.+|
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 367999999999999999999999999876666
No 150
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.68 E-value=2.2e-08 Score=69.55 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=26.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
+.+|.+++|+|++||||||+++.|++.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 47799999999999999999999999863
No 151
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.68 E-value=9e-09 Score=70.92 Aligned_cols=36 Identities=39% Similarity=0.405 Sum_probs=29.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCc-----C------CceeEEEcCcc
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRR-----L------NTGEIWVLGGK 55 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~-----~------~~G~i~~~g~~ 55 (125)
.++|+|+||||||||++.++|... | ..|.|.++|.+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 589999999999999999999742 3 35788888754
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.67 E-value=6.4e-09 Score=77.43 Aligned_cols=42 Identities=14% Similarity=0.036 Sum_probs=37.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPG 57 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~ 57 (125)
.++++++|+|||||||||++..|++.+.+..|+|.+.+.|..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 578999999999999999999999999888899988776653
No 153
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.64 E-value=2.2e-08 Score=69.58 Aligned_cols=46 Identities=15% Similarity=-0.099 Sum_probs=35.4
Q ss_pred hhhhhccccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCc
Q psy340 7 TKKKKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG 54 (125)
Q Consensus 7 ~~~~~~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~ 54 (125)
+.+.-.+-+++|++++|+||||||||||++.|++ .+..+.++++..
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~ 54 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE 54 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence 3334446789999999999999999999999999 444455566543
No 154
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=8.1e-09 Score=76.90 Aligned_cols=53 Identities=13% Similarity=0.023 Sum_probs=31.9
Q ss_pred EEEECCCCCCHHHHHHHHhC-CCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCc
Q psy340 21 YGLLGASGCGKTTLLSCIVG-RRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75 (125)
Q Consensus 21 ~~liG~nGsGKSTLL~~i~g-~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~ 75 (125)
+.|.||||+|||||+++|++ +..|..|.+.++|.+...... ....+++++|.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~ 92 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPY 92 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccc
Confidence 89999999999999999999 788999999998865432211 134577777765
No 155
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.63 E-value=1.2e-08 Score=68.77 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRL 44 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~ 44 (125)
.|++++|+|||||||||++++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3678999999999999999999997654
No 156
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.62 E-value=2.7e-08 Score=76.53 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=35.0
Q ss_pred cccCCCcEEEEECCCCCCHHHHHH--HHhCCCcCCc-----eeEEEcCcc
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLS--CIVGRRRLNT-----GEIWVLGGK 55 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~--~i~g~~~~~~-----G~i~~~g~~ 55 (125)
+-+++|++++|+||||||||||++ ++.+..+++. +.+++++++
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 456899999999999999999999 4567776644 378888765
No 157
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.61 E-value=3.7e-08 Score=76.15 Aligned_cols=37 Identities=30% Similarity=0.549 Sum_probs=31.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCc------------CCceeEEEcCcc
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRR------------LNTGEIWVLGGK 55 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~------------~~~G~i~~~g~~ 55 (125)
-.++|+|+||+|||||++.|+|... +.+|.+.++|.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 3799999999999999999999753 667899998864
No 158
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.61 E-value=1.6e-08 Score=77.93 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=27.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCc
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNT 46 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~ 46 (125)
+.+|++++|+|||||||||||++|+++..+.+
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 35789999999999999999999999887755
No 159
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.60 E-value=1.2e-08 Score=75.50 Aligned_cols=41 Identities=27% Similarity=0.322 Sum_probs=34.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCce-eEEEcCccC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTG-EIWVLGGKP 56 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G-~i~~~g~~~ 56 (125)
.+|++++|+|||||||||++..|++.+.+++| .|.+-+.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 46899999999999999999999999988778 676655544
No 160
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.58 E-value=1.1e-08 Score=75.63 Aligned_cols=60 Identities=17% Similarity=0.028 Sum_probs=44.8
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYF 90 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~ 90 (125)
...++.+++|+|++|||||||.+.|.+++.+. | . . .+.+.+|+|++.+++. +..+++.+.
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~-~~~~~l~~~ 86 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTH-EDQLKLNEQ 86 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCH-HHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCCh-HHHHHHhcc
Confidence 44678999999999999999999999998753 2 0 0 2345666998866653 677777663
No 161
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.58 E-value=1.8e-08 Score=79.58 Aligned_cols=42 Identities=31% Similarity=0.170 Sum_probs=35.1
Q ss_pred ccccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCcee--EEEcCc
Q psy340 12 KKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGE--IWVLGG 54 (125)
Q Consensus 12 ~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~--i~~~g~ 54 (125)
...+++|++++|+||||||||||+++++|...+. |+ +++..+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~e 318 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYE 318 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESS
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEe
Confidence 4577999999999999999999999999998875 54 455443
No 162
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.54 E-value=3.2e-08 Score=76.49 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=25.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
++.+++++|+|+|||||||||++|++..
T Consensus 154 lk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 154 LMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp ECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 3678999999999999999999999983
No 163
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.54 E-value=2.5e-08 Score=73.71 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=37.5
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPG 57 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~ 57 (125)
+|++++++|+||+||||++..|++.+.+..|+|.+.+.+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 78999999999999999999999999888999998877654
No 164
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.54 E-value=2.4e-08 Score=79.32 Aligned_cols=38 Identities=29% Similarity=0.225 Sum_probs=34.2
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCc
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG 54 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~ 54 (125)
+|++++|+||||+|||||+++|++...+..|.|.+.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999888888877663
No 165
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.52 E-value=1.1e-08 Score=71.77 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=29.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---cCCceeEEE
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRR---RLNTGEIWV 51 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~---~~~~G~i~~ 51 (125)
+.+++|+||+||||||+.++|++.+ .+++|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4689999999999999999999765 678888876
No 166
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.51 E-value=4.3e-08 Score=81.17 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=25.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
++|++++|+||||||||||||+|+|+.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 579999999999999999999999974
No 167
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.51 E-value=2.6e-08 Score=67.73 Aligned_cols=40 Identities=25% Similarity=0.150 Sum_probs=32.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCce--eEEEcCccC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTG--EIWVLGGKP 56 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G--~i~~~g~~~ 56 (125)
.+|++++|+|++||||||+.++|++.+.+ .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 46899999999999999999999998755 55 566666443
No 168
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.50 E-value=3.7e-08 Score=71.66 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=29.3
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeE
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI 49 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i 49 (125)
-+++|++++|+||||||||||++++++... .|.+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~ 59 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD 59 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC
Confidence 468999999999999999999999998654 4555
No 169
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.50 E-value=1.9e-07 Score=74.84 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=43.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCc-eeEEEcCccCCCCCCCcCCCeEEEEccC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNT-GEIWVLGGKPGTKGSGVPGKRVGYMPQE 74 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~-G~i~~~g~~~~~~~~~~~~~~ig~v~Q~ 74 (125)
..+|+.++|+||||+|||||+++|+++.++.. |.+.+.+..... ....++++++.
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~-----~~p~i~~~p~g 112 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE-----NMPRIKTVPAC 112 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT-----TSCEEEEEETT
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc-----cCCcEEEEecc
Confidence 37889999999999999999999999998877 788877654322 23467887654
No 170
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.49 E-value=6.3e-08 Score=73.55 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=23.3
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
+.+| +++|+|||||||||||++|.+
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHH
Confidence 3778 999999999999999999997
No 171
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.49 E-value=1.4e-08 Score=77.16 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=53.4
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeE-EEcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI-WVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i-~~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
+-+++|+++.|.||+|||||||+..++....+..|.+ ++++..... ..+.+++|+.+|+..+....++.+.+..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~i~~~~~~e~~l~~ 130 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLLISQPDHGEQALEI 130 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCEEECCSSHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhhhhhccCHHHHHHH
Confidence 5678999999999999999999999999887777776 555443221 1123457777776655556677776654
No 172
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.48 E-value=9.9e-08 Score=80.12 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=27.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHH--------hCCCcCCce
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCI--------VGRRRLNTG 47 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i--------~g~~~~~~G 47 (125)
++|++++|+||||||||||||+| .|..-|..+
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~ 699 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES 699 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 67999999999999999999999 776666544
No 173
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.42 E-value=6.6e-08 Score=81.04 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
++|++++|+||||||||||||+|+++
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHH
Confidence 68999999999999999999999754
No 174
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.41 E-value=2e-07 Score=70.82 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=29.1
Q ss_pred ccCCCcE-EEEECCCCCCHHHHHHHHhCCCc-----------CCceeEEEcCc
Q psy340 14 KKKKKKK-YGLLGASGCGKTTLLSCIVGRRR-----------LNTGEIWVLGG 54 (125)
Q Consensus 14 ~~~~Ge~-~~liG~nGsGKSTLL~~i~g~~~-----------~~~G~i~~~g~ 54 (125)
+..+|-. ++|+|++|||||||++.|+|... +..|.+.++|.
T Consensus 174 r~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~ 226 (364)
T 2qtf_A 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR 226 (364)
T ss_dssp -----CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE
T ss_pred hhhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE
Confidence 3344555 99999999999999999999765 45678877664
No 175
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.41 E-value=1.2e-07 Score=71.84 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=22.0
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHh
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIV 39 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~ 39 (125)
+++| +++|+|||||||||||.+|+
T Consensus 21 ~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 21 FQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4677 89999999999999999998
No 176
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.41 E-value=5.2e-08 Score=68.06 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=37.0
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCce--eEEEcCcc
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTG--EIWVLGGK 55 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G--~i~~~g~~ 55 (125)
....+|.+++|+|++||||||+.+.|++.+.|..| .+.+++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 34578999999999999999999999999887788 78887644
No 177
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.40 E-value=1.1e-07 Score=64.91 Aligned_cols=41 Identities=24% Similarity=0.173 Sum_probs=33.6
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEE-EcC
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIW-VLG 53 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~-~~g 53 (125)
.+..+|.+++|+|++||||||+.+.|+..+.+..+.+. +++
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 34467999999999999999999999998877666663 443
No 178
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.39 E-value=1.1e-07 Score=71.45 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=36.0
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccC
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~ 56 (125)
...++.+++|+|++|||||||++.|++...+..+.+.+-+.++
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 3478999999999999999999999998877777776655444
No 179
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.35 E-value=1.2e-07 Score=80.18 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=23.5
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
|++++|+||||||||||||+| |++.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 899999999999999999999 8764
No 180
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.35 E-value=3.9e-07 Score=70.02 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=34.4
Q ss_pred ccccCCCcEEEEECCCCCCHHHHHHHHhCC-----------CcCCceeEEEcC
Q psy340 12 KKKKKKKKKYGLLGASGCGKTTLLSCIVGR-----------RRLNTGEIWVLG 53 (125)
Q Consensus 12 ~~~~~~Ge~~~liG~nGsGKSTLL~~i~g~-----------~~~~~G~i~~~g 53 (125)
.+++..+..++|+|+||+|||||+++|+|. ..|..|.+.+.+
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 456788999999999999999999999997 567778777654
No 181
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.34 E-value=2.4e-07 Score=70.76 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=30.8
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEE
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWV 51 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~ 51 (125)
..+++|++++|+||||||||||+++|++.. +|.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 456899999999999999999999999853 676654
No 182
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.33 E-value=3e-07 Score=64.77 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=32.8
Q ss_pred hhhhhccccCCCcEEEEECCCCCCHHHHHHHH-hCCCcCCceeEEEcC
Q psy340 7 TKKKKKKKKKKKKKYGLLGASGCGKTTLLSCI-VGRRRLNTGEIWVLG 53 (125)
Q Consensus 7 ~~~~~~~~~~~Ge~~~liG~nGsGKSTLL~~i-~g~~~~~~G~i~~~g 53 (125)
+...-.+-+++|++++|+||||||||||+..+ .+..+...+.+++..
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 33333566799999999999999999996555 444444444555554
No 183
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.32 E-value=3.1e-07 Score=63.55 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
+++|+|+|||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999984
No 184
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.32 E-value=5.9e-07 Score=60.53 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+|..++|+|++|+|||||++.+++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999999864
No 185
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.32 E-value=3.6e-07 Score=61.00 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.1
Q ss_pred cEEEEECCCCCCHHHHHHHHhC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g 40 (125)
.+.+|+|||||||||++.+|.-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4999999999999999999873
No 186
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=4.1e-07 Score=62.90 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=23.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
..+|++++|+|++||||||+.+.|+..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3678999999999999999999998643
No 187
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.26 E-value=5e-07 Score=62.69 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=25.1
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999999998765
No 188
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.22 E-value=5.1e-07 Score=62.31 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy340 20 KYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g 40 (125)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 189
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.21 E-value=1.2e-06 Score=59.13 Aligned_cols=22 Identities=27% Similarity=0.678 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 190
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.20 E-value=1.5e-07 Score=74.15 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=23.0
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
|.+| +.+|+|+|||||||||.+|..+
T Consensus 58 f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 58 LGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred cCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 4677 9999999999999999999554
No 191
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.19 E-value=6.9e-07 Score=69.21 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=37.5
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT 58 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~~ 58 (125)
++++++++|+|||||||++..|++.+.+..+.|.+.+.|+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 689999999999999999999999999888999887766543
No 192
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.19 E-value=6.5e-07 Score=64.76 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
|++++|+|++||||||+.++|++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999999998844
No 193
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.18 E-value=1e-06 Score=62.66 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=31.5
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEc
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVL 52 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~ 52 (125)
..+|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 357999999999999999999999998877 6666543
No 194
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.18 E-value=1.5e-06 Score=57.95 Aligned_cols=23 Identities=26% Similarity=0.652 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 195
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.16 E-value=9.9e-08 Score=77.50 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=32.2
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcC--CceeEEEcCcc
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRL--NTGEIWVLGGK 55 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~--~~G~i~~~g~~ 55 (125)
.+++..++|+|++|+|||||++.|++...+ ..|+| .+|..
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~ 47 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTT 47 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcc
Confidence 467899999999999999999999976544 56777 44443
No 196
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.15 E-value=1.3e-06 Score=59.13 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
No 197
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.14 E-value=1.2e-06 Score=65.55 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.3
Q ss_pred cEEEEECCCCCCHHHHHHHHh
Q psy340 19 KKYGLLGASGCGKTTLLSCIV 39 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~ 39 (125)
.+.+|+|||||||||++.+|.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 499999999999999999874
No 198
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.13 E-value=1.4e-06 Score=60.84 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.5
Q ss_pred cEEEEECCCCCCHHHHHHHHh
Q psy340 19 KKYGLLGASGCGKTTLLSCIV 39 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~ 39 (125)
.+.+|+|||||||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 499999999999999999885
No 199
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.12 E-value=3e-07 Score=72.55 Aligned_cols=39 Identities=31% Similarity=0.313 Sum_probs=32.6
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPG 57 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~ 57 (125)
+++| +.|+||||+|||||+++|++... .+.+.+++.++.
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~ 101 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV 101 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGT
T ss_pred CCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHH
Confidence 3556 89999999999999999999874 778888876653
No 200
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.10 E-value=1.3e-06 Score=59.89 Aligned_cols=35 Identities=29% Similarity=0.211 Sum_probs=28.1
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCC---ceeEEEcC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRRLN---TGEIWVLG 53 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~~~---~G~i~~~g 53 (125)
.+++|+|+||||||||++.|.+.+.+. -|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 589999999999999999999875432 46666654
No 201
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.08 E-value=8.1e-07 Score=65.71 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=35.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPG 57 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~~ 57 (125)
+++++++|+||+||||++..|++.+.+..+.+.+.+.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 8899999999999999999999999888888988766643
No 202
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.07 E-value=2e-06 Score=58.26 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHh
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIV 39 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~ 39 (125)
.|.+++|+|++||||||+.+.|+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999999998
No 203
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.04 E-value=2.2e-06 Score=59.06 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
..+++|+|++||||||+.+.|+..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 204
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.03 E-value=4e-06 Score=59.30 Aligned_cols=28 Identities=32% Similarity=0.662 Sum_probs=23.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCce
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRLNTG 47 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~~~G 47 (125)
.++|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999997655444
No 205
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.01 E-value=1.2e-06 Score=62.77 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=26.5
Q ss_pred CcEEEEECCCCCCHHHHHHHHh---CCCcCCceeE
Q psy340 18 KKKYGLLGASGCGKTTLLSCIV---GRRRLNTGEI 49 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~---g~~~~~~G~i 49 (125)
.-+++|.||+||||||+.+.|+ |....+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 3589999999999999999999 6555566665
No 206
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.01 E-value=3.1e-06 Score=62.41 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+.+++|+|++|+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3489999999999999999999963
No 207
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.99 E-value=4.5e-06 Score=59.10 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=23.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
.+|.+++|+|++||||||+.++|++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999999986
No 208
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.99 E-value=4e-06 Score=55.82 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998643
No 209
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.98 E-value=3.8e-06 Score=63.18 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=25.6
Q ss_pred EEEEECCCCCCHHHHHHHHhC--CCcCCceeE
Q psy340 20 KYGLLGASGCGKTTLLSCIVG--RRRLNTGEI 49 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g--~~~~~~G~i 49 (125)
.++|+|++|||||||++.|+| +++..+|.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 899999999999999999999 455555654
No 210
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.98 E-value=2.7e-06 Score=61.03 Aligned_cols=41 Identities=24% Similarity=0.168 Sum_probs=32.3
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCccC
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~~ 56 (125)
....+.++.|+|++||||||+.+.|+..+. .+.+.+++...
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 346688999999999999999999998664 35567766543
No 211
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.98 E-value=3e-06 Score=67.06 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=32.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhC--CCcCCceeEEEcCccC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVG--RRRLNTGEIWVLGGKP 56 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g--~~~~~~G~i~~~g~~~ 56 (125)
.++..+.|.|++||||||+|++|.. +..+..+++.+...|.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDp 207 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDP 207 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECC
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECC
Confidence 5578899999999999999999876 4555667776655443
No 212
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.94 E-value=6.3e-06 Score=55.39 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997653
No 213
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.93 E-value=6.3e-06 Score=55.72 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999997643
No 214
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.91 E-value=3.2e-06 Score=65.63 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=33.5
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCcc
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~ 55 (125)
++.+++++||+||||||++..|+..+.+..+.|.+-+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 578999999999999999999999888777888765444
No 215
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.91 E-value=8.5e-06 Score=55.57 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.8
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
..++.+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999999999764
No 216
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.89 E-value=7.3e-06 Score=54.28 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHH
Q psy340 20 KYGLLGASGCGKTTLLSCI 38 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i 38 (125)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 217
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.89 E-value=1.3e-05 Score=55.07 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=27.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC--------CcCCceeEEEcC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR--------RRLNTGEIWVLG 53 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~--------~~~~~G~i~~~g 53 (125)
.++|+|++|+|||||++.+.+- ..+..+.+.+++
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 68 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence 5899999999999999999973 234556777665
No 218
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.88 E-value=7.3e-06 Score=56.79 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHhC
Q psy340 21 YGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 21 ~~liG~nGsGKSTLL~~i~g 40 (125)
+.|+||||||||||++.|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999864
No 219
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.87 E-value=6.7e-06 Score=62.18 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHhCCCcCCce
Q psy340 21 YGLLGASGCGKTTLLSCIVGRRRLNTG 47 (125)
Q Consensus 21 ~~liG~nGsGKSTLL~~i~g~~~~~~G 47 (125)
++|+|++|+|||||++.|.+...+..+
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC----
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 799999999999999999887544443
No 220
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=1.5e-06 Score=64.61 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=28.1
Q ss_pred cCCCcE--EEEECCCCCCHHHHHHHHhCCCcCCcee
Q psy340 15 KKKKKK--YGLLGASGCGKTTLLSCIVGRRRLNTGE 48 (125)
Q Consensus 15 ~~~Ge~--~~liG~nGsGKSTLL~~i~g~~~~~~G~ 48 (125)
+..|++ +.|.||+|+||||+++++++.+.+..+.
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 356666 9999999999999999999987665544
No 221
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.86 E-value=4.2e-06 Score=63.15 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=43.8
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEE-EcCccCCCCCCCcCCCeEEEEccCcccCCCCCHHHHHHH
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIW-VLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMY 89 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~-~~g~~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~ 89 (125)
+-+++|+++.|.||+|||||||+..++.......|.+. ++...... ....+.+|+.+++..++...++.+.+..
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~---~~~a~~lG~~~~~l~i~~~~~~e~~l~~ 130 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALD---PEYAKKLGVDTDSLLVSQPDTGEQALEI 130 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcC---HHHHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 45689999999999999999998888765544455554 44322111 0111234444444333344466665543
No 222
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.86 E-value=9.6e-06 Score=55.01 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.+.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999753
No 223
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.86 E-value=1.7e-06 Score=59.81 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRLN 45 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~~ 45 (125)
+++|.|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999998876543
No 224
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.85 E-value=5.6e-06 Score=62.83 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=25.7
Q ss_pred cccCCCcE--EEEECCCCCCHHHHHHHHhCCC
Q psy340 13 KKKKKKKK--YGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 13 ~~~~~Ge~--~~liG~nGsGKSTLL~~i~g~~ 42 (125)
..+++|++ ++|+|++||||||+.++|++.+
T Consensus 17 ~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 17 NRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34467888 9999999999999999999853
No 225
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.85 E-value=9.5e-06 Score=55.39 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 226
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.85 E-value=1.1e-05 Score=56.16 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHhC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
+-+++|.|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 227
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.85 E-value=5.6e-06 Score=62.80 Aligned_cols=37 Identities=14% Similarity=0.353 Sum_probs=31.5
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g 53 (125)
.+..++|+||+|||||||++.|+....+..+.|.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4667899999999999999999998777778887653
No 228
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.84 E-value=1.4e-05 Score=54.36 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=26.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC--------CcCCceeEEEcC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR--------RRLNTGEIWVLG 53 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~--------~~~~~G~i~~~g 53 (125)
.++|+|++|+|||||++.+.+- ..+..+.+.+++
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 6899999999999999999972 233456666665
No 229
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.84 E-value=1.4e-05 Score=60.81 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=28.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHhC-----------CCcCCceeEEEcC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVG-----------RRRLNTGEIWVLG 53 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g-----------~~~~~~G~i~~~g 53 (125)
+-.++|+|.+|+|||||+++|++ ...|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 3356667776654
No 230
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.82 E-value=1.5e-05 Score=54.63 Aligned_cols=26 Identities=23% Similarity=0.129 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47799999999999999999999876
No 231
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.81 E-value=1e-05 Score=58.40 Aligned_cols=24 Identities=33% Similarity=0.650 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
.++|+|++|||||||++.++|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999753
No 232
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.80 E-value=1.3e-05 Score=54.15 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=21.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIV 39 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~ 39 (125)
..+.++.|+|++||||||+.+.|+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 356789999999999999999998
No 233
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.79 E-value=1.5e-05 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
+.++.|+|++||||||+.+.|+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999975
No 234
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.78 E-value=1.5e-05 Score=53.37 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.3
Q ss_pred cEEEEECCCCCCHHHHHHHHhC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g 40 (125)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 235
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.78 E-value=1.7e-05 Score=54.47 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRL 44 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~ 44 (125)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 3678999999999999999999875543
No 236
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.77 E-value=1.3e-05 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
+++|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 237
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.76 E-value=1.5e-05 Score=57.26 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+++|+||+|||||||.+.|+...
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 238
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.75 E-value=1.4e-05 Score=60.50 Aligned_cols=21 Identities=19% Similarity=0.596 Sum_probs=19.7
Q ss_pred cEEEEECCCCCCHHHHHHHHh
Q psy340 19 KKYGLLGASGCGKTTLLSCIV 39 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~ 39 (125)
.+.+|+|||||||||+|.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 599999999999999999986
No 239
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.75 E-value=1.6e-05 Score=58.28 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=27.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g 53 (125)
..+.++.|.|||||||||+.+.|+...+ .+.+.++.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 4578999999999999999999976432 24455543
No 240
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.75 E-value=1.8e-05 Score=53.72 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
++.+++|+|++||||||+.+.|+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999974
No 241
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.75 E-value=1.8e-05 Score=54.05 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999999875
No 242
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.74 E-value=1.9e-05 Score=54.40 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.|.+++|.|+.||||||+.+.|+-.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999864
No 243
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.72 E-value=2.2e-05 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=22.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.+|.+++|.|+.||||||+.+.|+-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999853
No 244
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.71 E-value=2e-05 Score=53.26 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+++|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998744
No 245
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.71 E-value=2.4e-05 Score=52.86 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=20.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
+.+++|.|++||||||+.+.|+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998864
No 246
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.70 E-value=2e-05 Score=65.33 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=27.1
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRL 44 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~ 44 (125)
..+++.+.|+||||||||||+++|++....
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 478999999999999999999999998643
No 247
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.70 E-value=1.1e-05 Score=62.50 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=33.3
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCce-eEEEcC
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTG-EIWVLG 53 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G-~i~~~g 53 (125)
+.+++|+++.|.|++|+|||||+..+++...+..| .|.+.+
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45799999999999999999999999987765445 565544
No 248
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.70 E-value=2.4e-05 Score=53.20 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+++|.|++||||||+.+.|.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 249
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.68 E-value=2.2e-05 Score=53.08 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
=.++|+|++|+|||||++.+.+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3789999999999999999998653
No 250
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.67 E-value=2.7e-05 Score=56.68 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 251
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.66 E-value=5.4e-05 Score=51.24 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=25.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC-----CcCCce----eEEEcC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR-----RRLNTG----EIWVLG 53 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~-----~~~~~G----~i~~~g 53 (125)
.++|+|++|+|||||++.+.+- ..|+.+ .+.+++
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDG 64 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECC
Confidence 6899999999999999766553 345555 455555
No 252
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.66 E-value=3e-05 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
.+++|+|++|||||||+..|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3799999999999999999988654
No 253
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.65 E-value=2.1e-05 Score=56.02 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=25.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCcc
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~ 55 (125)
-+.|.||+|+|||||+++|++..... -+.+++.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 48899999999999999999875421 24555443
No 254
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.65 E-value=2.4e-05 Score=51.40 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47999999999999999999854
No 255
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.65 E-value=3e-05 Score=51.21 Aligned_cols=23 Identities=43% Similarity=0.707 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999999864
No 256
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.65 E-value=2.2e-05 Score=57.09 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=28.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEE
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIW 50 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~ 50 (125)
+...+.|.||+|+||||+.++|+.......+.+.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 3468999999999999999999998877666554
No 257
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.64 E-value=3.3e-05 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999984
No 258
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.63 E-value=2.8e-05 Score=52.40 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
..=.++|+|++|+|||||++.+.+..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999863
No 259
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.63 E-value=5.3e-05 Score=56.75 Aligned_cols=43 Identities=14% Similarity=0.002 Sum_probs=32.6
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCC--CcC-----CceeEEEcCcc
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGR--RRL-----NTGEIWVLGGK 55 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~--~~~-----~~G~i~~~g~~ 55 (125)
+-+++|+++.|.||+|+|||||+..++.. .++ ..+.++++...
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45689999999999999999999988874 322 23455666543
No 260
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.62 E-value=3.4e-05 Score=50.75 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998753
No 261
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.62 E-value=3.2e-05 Score=51.31 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999853
No 262
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.62 E-value=3.5e-05 Score=52.78 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999774
No 263
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.62 E-value=2.7e-05 Score=51.03 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 264
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.62 E-value=3.5e-05 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.+.+++|.|+.||||||+.+.|+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999999753
No 265
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.61 E-value=3.7e-05 Score=54.94 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|++|+|||||++.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999964
No 266
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.61 E-value=4.7e-05 Score=57.17 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
...-.++|+|++|+|||||++.++|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345589999999999999999999964
No 267
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.60 E-value=4.1e-05 Score=54.64 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
--+++|.|++||||||+.+.|+..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999763
No 268
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.60 E-value=3.4e-05 Score=59.38 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=25.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.+|+.++|+||+|+|||||++.|++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 679999999999999999999999865
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.59 E-value=4e-05 Score=53.07 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy340 20 KYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g 40 (125)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999954
No 270
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.59 E-value=3.2e-05 Score=50.45 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 271
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.59 E-value=4.9e-05 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
++-+++|+|+.||||||+.+.|+-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999753
No 272
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.59 E-value=5.9e-05 Score=49.98 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999874
No 273
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.58 E-value=4.1e-05 Score=56.47 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+++|+|++|+|||||++.+.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999863
No 274
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.58 E-value=4.3e-05 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997643
No 275
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.58 E-value=2.8e-05 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=17.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
++.++.|.|++||||||+.+.|+-.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999753
No 276
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.58 E-value=3.4e-05 Score=50.38 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++++|+.|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 277
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.57 E-value=3e-05 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 278
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.57 E-value=3.9e-05 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++++|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998764
No 279
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.57 E-value=3.8e-05 Score=51.82 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
-=.++|+|+.|+|||||++.+.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999863
No 280
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.57 E-value=4.3e-05 Score=53.54 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
.+.+++|+|++||||||+.+.|+-
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999974
No 281
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.57 E-value=3.9e-05 Score=51.53 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999999864
No 282
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.57 E-value=5.8e-05 Score=51.81 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
..+-+++|+|+.||||||+.+.|+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999975
No 283
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.56 E-value=3.6e-05 Score=50.49 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998864
No 284
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.56 E-value=3.7e-05 Score=50.55 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 285
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.56 E-value=4.6e-05 Score=56.21 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.9
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
-+++|+|+.|+|||||++.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999953
No 286
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.56 E-value=3.7e-05 Score=50.99 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998874
No 287
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.56 E-value=3.8e-05 Score=50.91 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 288
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.55 E-value=5.1e-05 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 289
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.55 E-value=4.3e-05 Score=53.32 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
.+.+++|+|++||||||+.+.|+-
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 290
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.55 E-value=5e-05 Score=52.65 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy340 20 KYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g 40 (125)
.++|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
No 291
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.55 E-value=3.9e-05 Score=50.21 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 292
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.55 E-value=4.5e-05 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.3
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.+++|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 293
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.55 E-value=6e-05 Score=51.68 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
...+++|.|++||||||+.+.|+-
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999874
No 294
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.55 E-value=3.4e-05 Score=50.62 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 295
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.54 E-value=5.7e-05 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999999864
No 296
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.53 E-value=5.1e-05 Score=55.61 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=25.2
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
..++..+.|.||+|+|||||.++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4678899999999999999999999865
No 297
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.53 E-value=4.9e-05 Score=51.24 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCCHHHHHHHHhC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
..+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999874
No 298
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.53 E-value=3.8e-05 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 299
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.53 E-value=6e-05 Score=50.01 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 300
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.53 E-value=3.1e-05 Score=51.67 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
+.=.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455799999999999999999985
No 301
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.52 E-value=6.3e-05 Score=55.98 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=28.7
Q ss_pred CCc--EEEEECCCCCCHHHHHHHHhCCCcCCc--eeEEEc
Q psy340 17 KKK--KYGLLGASGCGKTTLLSCIVGRRRLNT--GEIWVL 52 (125)
Q Consensus 17 ~Ge--~~~liG~nGsGKSTLL~~i~g~~~~~~--G~i~~~ 52 (125)
.+. .+.|.||+|+|||||++.+++...+.. .-+.++
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 456 899999999999999999999876642 345554
No 302
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.52 E-value=3.2e-05 Score=57.34 Aligned_cols=37 Identities=16% Similarity=0.367 Sum_probs=28.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCC----ceeEEEc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN----TGEIWVL 52 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~----~G~i~~~ 52 (125)
..+..+.|.||+|+|||||++.+++...+. ...++++
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 457799999999999999999999876442 3345554
No 303
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.52 E-value=6.5e-05 Score=50.08 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g 40 (125)
++++|.|+.||||||+.+.|+-
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999975
No 304
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.52 E-value=5.5e-05 Score=50.16 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 305
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.52 E-value=4.5e-05 Score=50.97 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 306
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.52 E-value=4.5e-05 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999986
No 307
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.51 E-value=6.7e-05 Score=52.93 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=21.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
.+|+.++++||+||||||++.++..
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 4699999999999999998876653
No 308
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.50 E-value=4.8e-05 Score=54.98 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|++|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999875
No 309
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.50 E-value=4.8e-05 Score=51.40 Aligned_cols=22 Identities=50% Similarity=0.638 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 310
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.50 E-value=4.8e-05 Score=50.90 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 311
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.50 E-value=4.9e-05 Score=49.75 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 312
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.49 E-value=7.3e-05 Score=53.27 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
.++-+++|.||+||||||+.+.|+-
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999974
No 313
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.49 E-value=5.2e-05 Score=50.96 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 589999999999999999998653
No 314
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.49 E-value=5.2e-05 Score=49.86 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~ 41 (125)
=.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999763
No 315
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.48 E-value=6.3e-05 Score=54.17 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|..|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 316
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.48 E-value=5.5e-05 Score=49.49 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy340 20 KYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g 40 (125)
.++|+|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999976
No 317
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.48 E-value=6.2e-05 Score=50.81 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.8
Q ss_pred cEEEEECCCCCCHHHHHHHHhC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g 40 (125)
.+++|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 318
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.47 E-value=5.9e-05 Score=51.67 Aligned_cols=31 Identities=32% Similarity=0.298 Sum_probs=25.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCceeE
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRRLNTGEI 49 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~~~~G~i 49 (125)
..+.|.||+|+|||||+++|+.........+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 6899999999999999999998765444444
No 319
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.47 E-value=8.2e-05 Score=53.45 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.+.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
No 320
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.47 E-value=5.8e-05 Score=51.64 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|++|+|||||++.+++.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999864
No 321
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.46 E-value=5.8e-05 Score=50.14 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 322
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.46 E-value=7e-05 Score=53.39 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.5
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
-.++|+|+.|||||||++.|.|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
No 323
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.46 E-value=5.9e-05 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 324
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.45 E-value=5.3e-05 Score=57.58 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999984
No 325
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.45 E-value=9.6e-05 Score=51.24 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987543
No 326
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.45 E-value=6.1e-05 Score=50.69 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 327
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.45 E-value=8.1e-05 Score=52.22 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy340 20 KYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g 40 (125)
+++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 328
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.44 E-value=6.3e-05 Score=49.71 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 329
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.44 E-value=8.6e-05 Score=55.08 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=32.6
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCC-cC------CceeEEEcCcc
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRR-RL------NTGEIWVLGGK 55 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~-~~------~~G~i~~~g~~ 55 (125)
+-+++|+++.|.||+|+|||||+..++... .+ ..+.++++...
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 556899999999999999999999888643 33 33456665543
No 330
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.44 E-value=8.9e-05 Score=49.68 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.=.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999999753
No 331
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.44 E-value=7.8e-05 Score=49.28 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 332
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.43 E-value=8.8e-05 Score=51.39 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.-+++|+|+.||||||+.+.++-.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999854
No 333
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.43 E-value=6.9e-05 Score=49.78 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 334
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.42 E-value=7.4e-05 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.6
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
-.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 335
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.42 E-value=9.4e-05 Score=53.56 Aligned_cols=30 Identities=23% Similarity=0.510 Sum_probs=23.0
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcee
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRRLNTGE 48 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~~~~G~ 48 (125)
-.++++|.+|+|||||++.|.|......|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999976544443
No 336
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.42 E-value=6.9e-05 Score=50.90 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 337
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.42 E-value=9.4e-05 Score=49.83 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 338
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.42 E-value=9.7e-05 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.673 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|++|+|||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999954
No 339
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.41 E-value=8.2e-05 Score=54.32 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999975
No 340
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.41 E-value=8e-05 Score=54.28 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHhC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
.-+++|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999983
No 341
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.41 E-value=9.3e-05 Score=50.35 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 342
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.41 E-value=7.5e-05 Score=50.82 Aligned_cols=23 Identities=43% Similarity=0.683 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 343
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.40 E-value=8.9e-05 Score=49.52 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 344
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.40 E-value=8.9e-05 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999853
No 345
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.40 E-value=9.1e-05 Score=53.72 Aligned_cols=23 Identities=43% Similarity=0.771 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|..|||||||++.++|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 346
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.40 E-value=7.6e-05 Score=50.30 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 347
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=6.9e-05 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
No 348
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.40 E-value=0.0001 Score=51.41 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.6
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
=.++|+|++|+|||||++.+.+..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999863
No 349
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.39 E-value=0.00011 Score=49.68 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
-.++|+|+.|+|||||++.+.+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999853
No 350
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.38 E-value=0.00013 Score=48.74 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 351
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.38 E-value=8.4e-05 Score=49.49 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 352
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.38 E-value=0.0001 Score=53.35 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
++..+.|.||+|+|||||+++|++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998754
No 353
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.38 E-value=4.4e-05 Score=52.73 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=21.9
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
-.++|+|+.|+|||||++.+.+..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 354
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.37 E-value=7.6e-05 Score=50.57 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 355
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.37 E-value=8.1e-05 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.5
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
=.++|+|+.|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 356
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.37 E-value=5.3e-05 Score=55.64 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=18.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.-+++|.||+||||||+.+.|...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 357
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.37 E-value=0.0001 Score=49.49 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 358
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.37 E-value=9.9e-05 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 359
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.36 E-value=9.1e-05 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 360
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.36 E-value=0.00011 Score=49.33 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.8
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~ 41 (125)
=.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999964
No 361
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.36 E-value=0.00015 Score=51.08 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
..+.+++|+|+.||||||+.+.|+-.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999753
No 362
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.36 E-value=8.7e-05 Score=51.30 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.9
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~ 41 (125)
-+++|+|+.|+|||||++.+++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999999875
No 363
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.36 E-value=0.0001 Score=50.31 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy340 20 KYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g 40 (125)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 364
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.36 E-value=7.9e-05 Score=50.84 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999853
No 365
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.35 E-value=9.4e-05 Score=50.00 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 366
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.35 E-value=0.00012 Score=50.31 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 367
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.35 E-value=0.00011 Score=50.99 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy340 20 KYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g 40 (125)
.++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999975
No 368
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.34 E-value=0.00015 Score=51.05 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=24.5
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRL 44 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~ 44 (125)
.|.+++|.|++||||||+++.|.-.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999876543
No 369
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.34 E-value=0.0001 Score=49.03 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 370
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.33 E-value=0.00017 Score=47.85 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999998764
No 371
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.33 E-value=0.0001 Score=49.87 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
=.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 372
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.33 E-value=9e-05 Score=50.10 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 373
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.33 E-value=0.00013 Score=49.49 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=21.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.+.=.++|+|+.|+|||||++.+.+-
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 44557899999999999999999874
No 374
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.33 E-value=4.5e-06 Score=69.13 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=30.4
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcCcc
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g~~ 55 (125)
+.++..+.|+||+|+|||||.++|++... .+-+.+++.+
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~ 546 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPE 546 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSS
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechH
Confidence 36788999999999999999999999864 2344454443
No 375
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.33 E-value=0.00012 Score=50.94 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
+-+++|+|+.||||||+.+.|+-.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 376
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.33 E-value=0.00013 Score=49.69 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999999953
No 377
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.32 E-value=0.00015 Score=55.66 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
....++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999999764
No 378
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.32 E-value=0.00011 Score=49.43 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999875
No 379
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.32 E-value=0.00013 Score=48.58 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy340 20 KYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g 40 (125)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
No 380
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.32 E-value=0.0001 Score=50.31 Aligned_cols=26 Identities=38% Similarity=0.462 Sum_probs=21.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
...=.++|+|+.|+|||||++.+.+-
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34457899999999999999999864
No 381
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.32 E-value=0.00014 Score=52.87 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g 40 (125)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 382
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.32 E-value=0.00011 Score=49.66 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 383
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.32 E-value=0.00011 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|..|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999965
No 384
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.32 E-value=0.00011 Score=49.19 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.8
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~ 41 (125)
=.++|+|+.|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999975
No 385
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.32 E-value=9.3e-05 Score=50.99 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988764
No 386
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.32 E-value=0.00011 Score=49.83 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.7
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~ 41 (125)
=.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 387
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.31 E-value=9.5e-05 Score=50.49 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 388
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.31 E-value=0.00011 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
=.++|+|+.|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998753
No 389
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.30 E-value=0.00013 Score=50.40 Aligned_cols=22 Identities=45% Similarity=0.758 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999974
No 390
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.29 E-value=0.0002 Score=50.63 Aligned_cols=28 Identities=36% Similarity=0.374 Sum_probs=23.5
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhC
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
.++.+..++.|+||.||||+|..+.|+-
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445667999999999999999998874
No 391
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.29 E-value=0.00015 Score=52.09 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=21.6
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
=.++|+|+.|+|||||++.+.|..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 392
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.29 E-value=5.6e-05 Score=59.27 Aligned_cols=35 Identities=34% Similarity=0.500 Sum_probs=28.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEE
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIW 50 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~ 50 (125)
-+|+..+|+|++|+|||||++.|+.......+.+.
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred ccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 57999999999999999999999886543334443
No 393
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.29 E-value=0.00016 Score=51.72 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
+|.+++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987654
No 394
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.28 E-value=0.00014 Score=51.80 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=21.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
.+|-+++|.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999987653
No 395
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.28 E-value=0.00011 Score=57.54 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHhCCC
Q psy340 21 YGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 21 ~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+.|+||+|+|||||+++|++..
T Consensus 52 vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8899999999999999999854
No 396
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.28 E-value=7.9e-05 Score=54.80 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.+..+.|.||+|+|||||+++|+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45689999999999999999999765
No 397
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.27 E-value=8.8e-05 Score=49.29 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 398
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.27 E-value=0.00016 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++++|++|+|||||++.|.+..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999854
No 399
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.27 E-value=0.00014 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.=.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 400
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.27 E-value=0.0002 Score=49.16 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.1
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998743
No 401
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.27 E-value=8.6e-05 Score=49.55 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=9.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 402
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.27 E-value=0.00012 Score=50.26 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 403
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.26 E-value=0.00012 Score=56.63 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|++|+|||||++.|+|..
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
No 404
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.25 E-value=0.00016 Score=48.89 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999888764
No 405
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.25 E-value=0.0002 Score=50.44 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
+|.+++|-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987654
No 406
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.23 E-value=0.0002 Score=49.41 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998853
No 407
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.23 E-value=0.00019 Score=54.07 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.1
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3899999999999999999987653
No 408
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.22 E-value=0.00023 Score=49.72 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 409
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.21 E-value=0.0002 Score=49.53 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
+-+++|+|++||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999763
No 410
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.20 E-value=0.00033 Score=51.18 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=24.4
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN 45 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~ 45 (125)
..+-.++++|.+|+|||||++.|.|.....
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~ 147 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAK 147 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceee
Confidence 344579999999999999999999975433
No 411
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.19 E-value=0.00021 Score=48.78 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 412
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.19 E-value=7.8e-05 Score=51.36 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 413
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.19 E-value=0.00026 Score=50.02 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=27.5
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEE
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIW 50 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~ 50 (125)
+|.+++|.|++||||||+++.|.-.+.. .+.+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~~ 36 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKLL 36 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc-cceEE
Confidence 5889999999999999999999987765 44443
No 414
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.19 E-value=0.00016 Score=48.80 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 415
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.19 E-value=0.00028 Score=50.09 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=24.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
..|.+++|.|++||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999999987654
No 416
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.19 E-value=0.00024 Score=50.18 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
|.+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998755
No 417
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.18 E-value=0.00022 Score=49.45 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
--.++|+|+.|+|||||++.++..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999988864
No 418
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.17 E-value=0.00026 Score=49.74 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=22.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
-.|..+.|+||+|+|||||...|+..
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34778999999999999999988764
No 419
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.16 E-value=0.00027 Score=48.47 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.0
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
..+.|.||+|+|||||++.++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999997643
No 420
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.16 E-value=0.00029 Score=52.70 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+.+++|+||+|||||||...|+-..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999998654
No 421
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.16 E-value=0.00014 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.5
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~ 41 (125)
=.++++|+.|+|||||++.+.+-
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999753
No 422
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.14 E-value=0.00024 Score=47.14 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
....+.|.||.|+|||||++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35578899999999999999998765
No 423
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.13 E-value=8.5e-05 Score=50.44 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=4.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999876
No 424
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00022 Score=49.46 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 425
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.13 E-value=0.00017 Score=51.71 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999988765
No 426
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.13 E-value=0.00036 Score=50.10 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++.-+.|.||+|+|||||+++++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 566779999999999999999998754
No 427
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.13 E-value=0.00036 Score=51.60 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=25.7
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
+-+++|+++.|.|++|+|||||+..++..
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 55799999999999999999998887754
No 428
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.12 E-value=0.00047 Score=48.18 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=27.0
Q ss_pred chhhhhccccCCCcEEEEECCCCCCHHHHHHHHh
Q psy340 6 NTKKKKKKKKKKKKKYGLLGASGCGKTTLLSCIV 39 (125)
Q Consensus 6 ~~~~~~~~~~~~Ge~~~liG~nGsGKSTLL~~i~ 39 (125)
.+-+.-.+-+++|+++.|.|++|+|||||+-.++
T Consensus 18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3344445678999999999999999999986554
No 429
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.12 E-value=0.00034 Score=52.69 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
++.+++|+||.|||||||...|+-.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45699999999999999999999876
No 430
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.12 E-value=0.00021 Score=48.91 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 431
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.12 E-value=0.00034 Score=48.85 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
|.+++|=|+.||||||+++.|.-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987653
No 432
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.11 E-value=0.0003 Score=52.62 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.7
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998765
No 433
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.10 E-value=0.00024 Score=49.15 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=21.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
...=.++|+|+.|+|||||++.+.+-
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 33456899999999999999999864
No 434
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.07 E-value=0.00026 Score=48.51 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.8
Q ss_pred cEEEEECCCCCCHHHHHHHHhC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g 40 (125)
=.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999988875
No 435
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.07 E-value=0.00033 Score=51.60 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=25.2
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhC
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
+-+++|+++.|.||+|+|||||+..++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5568999999999999999999988775
No 436
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.03 E-value=0.00037 Score=47.71 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 437
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.03 E-value=0.00046 Score=51.44 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
.|.-++|.|+||+|||||...+..
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 488899999999999999988886
No 438
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.03 E-value=0.00035 Score=54.37 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=27.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEE
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWV 51 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~ 51 (125)
++.+++++|++|+||||++..|+..+....-.+.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46799999999999999999999766544444543
No 439
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.03 E-value=0.00028 Score=54.54 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+..+.|.||+|+|||||+++|++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999865
No 440
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.02 E-value=0.00044 Score=48.37 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
++.|+||.||||+|..+.|+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998853
No 441
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.99 E-value=0.00025 Score=53.60 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=30.5
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCce-eEEEcC
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTG-EIWVLG 53 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G-~i~~~g 53 (125)
+-+++|+++.|.|++|+|||||...++.......+ -++++.
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45689999999999999999999887765432233 445554
No 442
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.99 E-value=0.0002 Score=55.92 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=24.0
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
+..+|=.++|+|+.|+|||||++.+++.
T Consensus 220 ~~r~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 220 LLRTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HHHHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred hhcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3455667999999999999999999884
No 443
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.99 E-value=0.00017 Score=55.83 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=27.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCceeEEEcC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~~g 53 (125)
.+++|+|++|+||||++..|++.+......+.+-+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 59999999999999999999997654334454433
No 444
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.96 E-value=0.00038 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 445
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.96 E-value=0.00066 Score=47.91 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
...-+.|.||+|+|||||.++++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999874
No 446
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.96 E-value=0.00046 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|.+++|||||++.|++..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999863
No 447
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.94 E-value=0.00063 Score=50.74 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
..+++|+||+|||||||...|+-..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999998654
No 448
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.93 E-value=0.00032 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|..++|||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 449
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.00066 Score=49.89 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHhCCC
Q psy340 21 YGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 21 ~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+.|.||+|+||||++++++..+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999864
No 450
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.92 E-value=0.00063 Score=46.55 Aligned_cols=22 Identities=36% Similarity=0.282 Sum_probs=19.1
Q ss_pred CCcEEEEECCCCCCHHHHH-HHH
Q psy340 17 KKKKYGLLGASGCGKTTLL-SCI 38 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL-~~i 38 (125)
+|.++.+.||.||||||++ +.+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 4889999999999999997 444
No 451
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.91 E-value=0.00039 Score=52.25 Aligned_cols=38 Identities=18% Similarity=0.049 Sum_probs=30.0
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCcCCceeEEE
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWV 51 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G~i~~ 51 (125)
-+.+|+++.|.|++|+|||||+..++.......+.|.|
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~ 79 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV 79 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 56999999999999999999998887754333445544
No 452
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.90 E-value=0.0005 Score=50.88 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998765
No 453
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.90 E-value=0.00077 Score=49.54 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.7
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~ 41 (125)
-.++|+|+.|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998775
No 454
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.89 E-value=0.00055 Score=51.37 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
..-+++|+|+.|+|||||++.|+..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998654
No 455
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.89 E-value=0.00059 Score=52.57 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.+++|+||+|||||||...|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999988654
No 456
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.87 E-value=0.00066 Score=46.74 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.3
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g 40 (125)
.|.-+.|.|+||+|||||...+..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 477789999999999999877654
No 457
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.87 E-value=0.00065 Score=46.03 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.+.|.||.|+|||||++.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998864
No 458
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.89 E-value=0.00017 Score=49.22 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 5899999999999999888764
No 459
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.83 E-value=9.3e-05 Score=50.41 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998853
No 460
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.82 E-value=0.00095 Score=43.58 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=25.8
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCce
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTG 47 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~~G 47 (125)
..+.-+.|.||+|+|||++.++|........+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 45667899999999999999999987644333
No 461
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.82 E-value=0.00059 Score=54.30 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=22.1
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
=.++|+|..|+|||||++.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 489999999999999999999964
No 462
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.81 E-value=0.00052 Score=56.66 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=25.3
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN 45 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~~~ 45 (125)
..|+.+.|+||+||||||++.++.....+.
T Consensus 107 ~~~~~vii~gpTGSGKTtllp~ll~~~~~~ 136 (773)
T 2xau_A 107 QNNQIMVFVGETGSGKTTQIPQFVLFDEMP 136 (773)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHCG
T ss_pred hCCCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence 578999999999999999999987654443
No 463
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.81 E-value=0.00083 Score=51.84 Aligned_cols=31 Identities=13% Similarity=0.013 Sum_probs=26.9
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
+-+++|+++.|.|++|+|||||+..++....
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999988877543
No 464
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.81 E-value=0.00032 Score=54.96 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=22.4
Q ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 14 KKKKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
+..+|=.++|+|+.|+|||||++.+++.
T Consensus 229 ~~r~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 229 IVSEGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HHHHCEEEEEECCTTSSHHHHHHHCC--
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3345666999999999999999999986
No 465
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.80 E-value=0.0004 Score=47.98 Aligned_cols=21 Identities=43% Similarity=0.705 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHH-HhC
Q psy340 20 KYGLLGASGCGKTTLLSC-IVG 40 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~-i~g 40 (125)
.++|+|+.|+|||||++. +.+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 589999999999999998 555
No 466
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.78 E-value=0.00066 Score=51.36 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
++..++++|++|+|||||+|.|.+.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 3557999999999999999999986
No 467
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.78 E-value=0.00066 Score=54.59 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+--+++|+|+.++|||||+|.|.|..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 34578999999999999999999964
No 468
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.76 E-value=0.00092 Score=50.92 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=21.7
Q ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
=.++++|+.|+|||||++.|+|..
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcc
Confidence 478999999999999999999953
No 469
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.76 E-value=0.00063 Score=55.53 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.9
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++=.++|+|+.|+|||||++.|+|..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456679999999999999999999953
No 470
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.76 E-value=0.00034 Score=49.82 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHhC
Q psy340 21 YGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 21 ~~liG~nGsGKSTLL~~i~g 40 (125)
+.|.||+|+|||||.++|+.
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 77999999999999999986
No 471
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.74 E-value=0.0011 Score=48.08 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=22.7
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++..+.|.||.|+|||||.++++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 455679999999999999999887754
No 472
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.71 E-value=0.00055 Score=51.42 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~ 41 (125)
.++|+|.++||||||++.+++.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eeeeeCCCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
No 473
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.71 E-value=0.00073 Score=56.38 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.3
Q ss_pred ccCCCcEEEEECCCCCCHHHHH
Q psy340 14 KKKKKKKYGLLGASGCGKTTLL 35 (125)
Q Consensus 14 ~~~~Ge~~~liG~nGsGKSTLL 35 (125)
.++.|.+++|.|.||||||||.
T Consensus 32 ~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 32 KVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp EEESSSEEEEESSTTSSHHHHH
T ss_pred EecCCCEEEEECCCCCCHHHHH
Confidence 4589999999999999999997
No 474
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.69 E-value=0.00098 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.723 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|.+|+|||||++.+.|..
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 475
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.67 E-value=0.00072 Score=51.17 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
++..++++|.+|+|||||+|.|.|.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 4568999999999999999999985
No 476
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.65 E-value=0.0011 Score=47.21 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=19.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVG 40 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g 40 (125)
-..||+|+.||||||+.+.|+-
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 3589999999999999998854
No 477
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.65 E-value=0.0011 Score=47.38 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=21.3
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
+...+.|.||+|+|||||.++|+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457889999999999999999864
No 478
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.65 E-value=0.0014 Score=48.34 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
+.-+.|.||.|+|||+|+.+|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987654
No 479
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.63 E-value=0.0014 Score=47.76 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.|..+.|.||.|+|||||++.+....
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 35799999999999999999987543
No 480
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.63 E-value=0.0014 Score=49.62 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=20.2
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIV 39 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~ 39 (125)
..-..+.|+|.+||||||+++.+-
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 334578999999999999999883
No 481
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.63 E-value=0.0013 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|.+++|||||++.++|-.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 482
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.62 E-value=0.0014 Score=47.26 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.+.-+.|.||+|+||||+.++++...
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999999999998643
No 483
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.62 E-value=0.0015 Score=52.92 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+|.++.|+|.+||||||+.+.|.-.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998754
No 484
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.61 E-value=0.0014 Score=49.04 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
++.-+.|.||+|+||||+.++|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 56679999999999999999998743
No 485
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.61 E-value=0.0014 Score=48.59 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+..+.|.||.|+|||||++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998653
No 486
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.60 E-value=0.0013 Score=52.05 Aligned_cols=30 Identities=10% Similarity=-0.052 Sum_probs=26.0
Q ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCcC
Q psy340 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRL 44 (125)
Q Consensus 15 ~~~Ge~~~liG~nGsGKSTLL~~i~g~~~~ 44 (125)
...|-++.|+|.+||||||+-+.|+..+..
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 457889999999999999999999886653
No 487
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.60 E-value=0.0014 Score=48.63 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=24.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
.++..+.|.||.|+|||||.+.++....
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4467899999999999999999987543
No 488
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.59 E-value=0.0015 Score=52.30 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=24.5
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRRR 43 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~~ 43 (125)
..+.++.|.|++||||||+.+.|.-.+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4678999999999999999999987654
No 489
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.58 E-value=0.0017 Score=48.06 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=23.0
Q ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 16 KKKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 16 ~~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.+..-+.|.||.|+|||||.++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 344678899999999999999999754
No 490
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0013 Score=50.07 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
-+||||..-+|||||+++|+|..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~ 96 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE 96 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999953
No 491
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.56 E-value=0.0018 Score=48.44 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
+..-+.|.||+|+|||||.++|+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999998743
No 492
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.56 E-value=0.0015 Score=51.50 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Q psy340 18 KKKYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 18 Ge~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.=.++|+|..|+|||||++.+++-.
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999999864
No 493
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.52 E-value=0.0018 Score=47.21 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.1
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~ 41 (125)
-.+.|.||.|+|||+|.++|+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46778899999999999999864
No 494
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.52 E-value=0.0011 Score=49.18 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.++|+|+.|+|||||++.+.+-.
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~ 189 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGE 189 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSC
T ss_pred eEEEECCCCccHHHHHHHHhCCC
Confidence 58999999999999999998753
No 495
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.52 E-value=0.002 Score=47.47 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
+..-+.|.||+|+|||+|.++|+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456899999999999999999864
No 496
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.49 E-value=0.0014 Score=50.77 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy340 20 KYGLLGASGCGKTTLLSCIVGRR 42 (125)
Q Consensus 20 ~~~liG~nGsGKSTLL~~i~g~~ 42 (125)
.+.|.||+|+|||||.++|+...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 48899999999999999999754
No 497
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.49 E-value=0.0016 Score=47.84 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.5
Q ss_pred cEEEEECCCCCCHHHHHHHHhCC
Q psy340 19 KKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 19 e~~~liG~nGsGKSTLL~~i~g~ 41 (125)
..+.|.||+|+|||||++.|+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999999864
No 498
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.48 E-value=0.0018 Score=51.15 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHh
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIV 39 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~ 39 (125)
+..+++|+|++||||||++..|+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35589999999999999999999
No 499
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.48 E-value=0.0015 Score=49.07 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=25.1
Q ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCC
Q psy340 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGR 41 (125)
Q Consensus 13 ~~~~~Ge~~~liG~nGsGKSTLL~~i~g~ 41 (125)
+.+++|.++.|.||.|+|||||...++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 45678889999999999999999988753
No 500
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.47 E-value=0.0027 Score=45.11 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcC
Q psy340 17 KKKKYGLLGASGCGKTTLLSCIVGRRRL 44 (125)
Q Consensus 17 ~Ge~~~liG~nGsGKSTLL~~i~g~~~~ 44 (125)
.+.-+.|.||+|+|||+|.+.|......
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 4567889999999999999999987654
Done!