RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy340
(125 letters)
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 90.1 bits (224), Expect = 6e-23
Identities = 42/128 (32%), Positives = 71/128 (55%), Gaps = 11/128 (8%)
Query: 7 TKKKKKKKK---------KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPG 57
TKK K + + +GLLG +G GKTTLL + G + +GEI VLG
Sbjct: 11 TKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVV 70
Query: 58 TKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPSQ 117
+ + V +R+GY+PQE +LY E +++E + +F ++G+ E ++R++ LL L +
Sbjct: 71 KEPAKVR-RRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK 129
Query: 118 -SRLVKNL 124
++ V+ L
Sbjct: 130 ANKKVRTL 137
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid
transport, and lantibiotic immunity. In bacteria and
archaea, these transporters usually include an
ATP-binding protein and one or two integral membrane
proteins. Eukaryotic systems of the ABCA subfamily
display ABC domains that are quite similar to this
family. The ATP-binding domain shows the highest
similarity between all members of the ABC transporter
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 73.6 bits (182), Expect = 1e-17
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
YGLLG +G GKTTL+ I+G + ++GEI VLG + V +R+GY+P+E +LY
Sbjct: 29 YGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVK-RRIGYLPEEPSLYEN 87
Query: 81 FSIKETMMY 89
+++E +
Sbjct: 88 LTVRENLKL 96
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 69.9 bits (172), Expect = 6e-16
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
YGLLG +G GKTTL+ + ++G I + G + + +R+GY+PQE +Y
Sbjct: 28 YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLR-RRIGYLPQEFGVYPN 86
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
F+++E + Y W+ G+ + E+ R+ +L ++L
Sbjct: 87 FTVREFLDYIAWLKGIPSKEVKARVDEVLELVNL 120
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 67.5 bits (166), Expect = 6e-15
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
GLLG +G GKTT L + G R +G ++ G + +GY PQ AL+ E
Sbjct: 32 GLLGHNGAGKTTTLKMLTGELRPTSGTAYI-NGYSIRTDRKAARQSLGYCPQFDALFDEL 90
Query: 82 SIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL-PSQSRLVKNL 124
+++E + ++ + G+ EI + ++ LL L L ++ + L
Sbjct: 91 TVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTL 134
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 63.9 bits (156), Expect = 3e-13
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
+GLLG +G GKTT I+G GEI GG + R+GY+P+E LY +
Sbjct: 31 FGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIK----NRIGYLPEERGLYPK 86
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124
++++ + Y + GM EI +LQ L L++ +++ +K L
Sbjct: 87 MTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKEL 131
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 62.2 bits (152), Expect = 5e-13
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALYGEF 81
LLG SGCGKTTLL I G R ++GEI + G+ T P +R +G + Q+ AL+
Sbjct: 31 LLGPSGCGKTTLLRLIAGLERPDSGEILI-DGRDVTGVP--PERRNIGMVFQDYALFPHL 87
Query: 82 SIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP 115
++ E + + + G+ EI R++ LL + L
Sbjct: 88 TVAENIAFGLKLRGVPKAEIRARVRELLELVGLE 121
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 61.4 bits (150), Expect = 1e-12
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLN--TGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYG 79
++G SG GK+TLL+ + GRR +GE+ + G+P K S K +GY+PQ+ L+
Sbjct: 39 AIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI-NGRPLDKRS--FRKIIGYVPQDDILHP 95
Query: 80 EFSIKETMMY 89
+++ET+M+
Sbjct: 96 TLTVRETLMF 105
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 61.2 bits (149), Expect = 4e-12
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALYGEF 81
LLG SGCGKTTLL I G R G I GG+ T+ P KR G + Q AL+
Sbjct: 35 LLGPSGCGKTTLLRIIAGLERQTAGTI-YQGGRDITRLP--PQKRDYGIVFQSYALFPNL 91
Query: 82 SIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPSQSR 119
++ + + Y GM E+ +R+ LL+ + LP R
Sbjct: 92 TVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER 129
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 60.3 bits (147), Expect = 4e-12
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQE 74
G+LG +G GK+TLL C+ G + +GE+ + G + K++ Y+PQ
Sbjct: 32 GILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQS 84
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 60.2 bits (146), Expect = 9e-12
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
+GLLG +G GK+T+ I+G + G+I VLG P + + R+G +PQ L E
Sbjct: 70 FGLLGPNGAGKSTIARMILGMTSPDAGKITVLG-VPVPARARLARARIGVVPQFDNLDLE 128
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPSQS 118
F+++E ++ FG FGM T EI+ + LL F L S++
Sbjct: 129 FTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA 166
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 58.4 bits (142), Expect = 1e-11
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75
+K + +GLLG +G GKTT + I+G ++GE+ G R+GY+P+E
Sbjct: 24 EKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIA----ARNRIGYLPEER 79
Query: 76 ALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
LY + + + ++Y + G++ E R+ L L+L
Sbjct: 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL 118
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 59.2 bits (144), Expect = 2e-11
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPG-KR-VGYMPQEIALYGE 80
LLG SGCGKTTLL I G + ++GEI L G+ T VP KR +G + Q AL+
Sbjct: 36 LLGPSGCGKTTLLRMIAGFEQPSSGEIL-LDGEDIT---DVPPEKRPIGMVFQSYALFPH 91
Query: 81 FSIKETMMY-FGWIFGMETPEIDDRLQFLLNFLDLPS 116
+++E + + ++ EI R++ L + L
Sbjct: 92 MTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG 128
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 59.2 bits (143), Expect = 2e-11
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGK------RVGYMPQE 74
+GLLG +G GK+T+ ++G + G+I VLG VP + +G +PQ
Sbjct: 33 FGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEP-------VPSRARLARVAIGVVPQF 85
Query: 75 IALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPSQS 118
L EF+++E ++ FG FGM T EI+ + LL F L S++
Sbjct: 86 DNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA 129
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent)
systems that are largely represented in archaea and
eubacteria and are primarily involved in scavenging
solutes from the environment. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 178
Score = 58.0 bits (141), Expect = 2e-11
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGK---RVGYMPQEIAL 77
LLG SG GK+TLL CI G ++G I + G+ T R+G + Q+ AL
Sbjct: 29 VALLGPSGSGKSTLLRCIAGLEEPDSGSIL-IDGEDLTDLEDELPPLRRRIGMVFQDFAL 87
Query: 78 YGEFSIKETMMY 89
+ ++ E +
Sbjct: 88 FPHLTVLENIAL 99
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 57.9 bits (140), Expect = 5e-11
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
+GLLG +G GKTT L ++G + G I L G+P + +RVG +PQ L +
Sbjct: 36 FGLLGPNGAGKTTTLRMLLGLTHPDAGSI-SLCGEPVPSRARHARQRVGVVPQFDNLDPD 94
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPSQS 118
F+++E ++ FG FG+ + LL F L +++
Sbjct: 95 FTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA 132
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with
duplicated ATPase domains [General function prediction
only].
Length = 530
Score = 57.3 bits (139), Expect = 9e-11
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYG 79
+ GL+G +G GK+TLL + G ++GE+ G RVGY+ QE L
Sbjct: 31 RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP-----------KGLRVGYLSQEPPLDP 79
Query: 80 EFSIKETMM 88
E ++ + ++
Sbjct: 80 EKTVLDYVI 88
Score = 38.8 bits (91), Expect = 2e-04
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA-LY 78
+ ++G +G GK+TLL + G +G + V G V ++GY Q L
Sbjct: 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV--------GETV---KIGYFDQHRDELD 398
Query: 79 GEFSIKETMM 88
+ ++ E +
Sbjct: 399 PDKTVLEELS 408
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 55.8 bits (135), Expect = 2e-10
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP---GTKGSGVP--GKRVGYMPQEIA 76
G+ GASG GK+TLL CI G + + G I VL G K +P +++G + Q+ A
Sbjct: 27 GIFGASGAGKSTLLRCIAGLEKPDGGTI-VLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85
Query: 77 LYGEFSIKETMMY 89
L+ +++E + +
Sbjct: 86 LFPHLNVRENLAF 98
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 54.9 bits (133), Expect = 4e-10
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALY 78
+LG SGCGK+TLL I G + +GE+ +L G+P T PG +GY+ QE AL
Sbjct: 34 ILGPSGCGKSTLLRLIAGLEKPTSGEV-LLDGRPVTG----PGPDIGYVFQEDALL 84
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 54.0 bits (131), Expect = 6e-10
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFS 82
L+G SGCGK+TLL I G R +GE+ ++ G+P T PG GY+ Q+ AL +
Sbjct: 35 LVGPSGCGKSTLLRIIAGLERPTSGEV-LVDGEPVTG----PGPDRGYVFQQDALLPWLT 89
Query: 83 IKETMMYFGW-IFGMETPEIDDRLQFLLNFLDL 114
+ + + G + G+ E +R + LL + L
Sbjct: 90 VLDNVA-LGLELQGVPKAEARERAEELLELVGL 121
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 53.6 bits (130), Expect = 8e-10
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 25/112 (22%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ-- 73
KK + ++G +G GK+TLL + G +GE+ V G ++VG + Q
Sbjct: 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNP 84
Query: 74 -----------EIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
E+A F ++ G+ EI++R++ L + L
Sbjct: 85 DDQFFGPTVEEEVA----FGLE--------NLGLPEEEIEERVEEALELVGL 124
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 53.1 bits (128), Expect = 1e-09
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
+GLLG +G GKTT + + + +G V G + +R+G + Q++++ E
Sbjct: 29 FGLLGPNGAGKTTTIKMLTTLLKPTSGRATV-AGHDVVREPREVRRRIGIVFQDLSVDDE 87
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL-PSQSRLVKN 123
+ E + ++G+ E +R+ LL+F+ L + RLVK
Sbjct: 88 LTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKT 131
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component
of iron-siderophores, vitamin B12 and hemin
transporters and related proteins. ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 52.4 bits (127), Expect = 2e-09
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75
+ + G+LG +G GK+TLL + G + ++GEI + G + +++ Y+PQ +
Sbjct: 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQAL 82
Query: 76 ALYG 79
L G
Sbjct: 83 ELLG 86
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and
an outer membrane protein (OMP). For the HlyA
transporter complex, HlyB (ABC transporter) and HlyD
(MFP) reside in the inner membrane of E. coli. The OMP
component is TolC, which is thought to interact with
the MFP to form a continuous channel across the
periplasm from the cytoplasm to the exterior. HlyB
belongs to the family of ABC transporters, which are
ubiquitous, ATP-dependent transmembrane pumps or
channels. The spectrum of transport substrates ranges
from inorganic ions, nutrients such as amino acids,
sugars, or peptides, hydrophobic drugs, to large
polypeptides, such as HlyA.
Length = 173
Score = 52.2 bits (126), Expect = 2e-09
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP-GTKGSGVPGKRVGYMPQEIALYG 79
++G SG GK+TL I+G R +G + L G G VGY+PQ+ L+
Sbjct: 32 AIIGPSGSGKSTLARLILGLLRPTSGRV-RLDGADISQWDPNELGDHVGYLPQDDELFS 89
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 53.0 bits (128), Expect = 2e-09
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK-PGTKGSGVP--GKRVGYMPQEIALY 78
+LG SG GK+TLL I+G R + GEI + G P + KR+G + Q+ AL+
Sbjct: 38 AILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALF 97
Query: 79 GEFSIKETMMY 89
++ E + +
Sbjct: 98 SSLTVFENVAF 108
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 52.8 bits (127), Expect = 3e-09
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK---PGTKGSGVPG--KRVGYMPQEIA 76
+ G SG GKTTL+ I G R + GEI VL G+ KG +P +R+GY+ QE
Sbjct: 27 AIFGRSGSGKTTLIRLIAGLTRPDEGEI-VLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 77 LYGEFSIKETMMYFGW-IFGMETPEIDDRLQFLLN 110
L+ S++ + Y E +R+ LL
Sbjct: 86 LFPHLSVRGNLRYGMKRARPSERRISFERVIELLG 120
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 157
Score = 51.1 bits (123), Expect = 4e-09
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73
K + L+G +G GK+TLL I G + +GEI + G +R+GY+PQ
Sbjct: 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 51.6 bits (124), Expect = 5e-09
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 23/112 (20%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
LLG SG GKTTLL I G R ++G I GG+ T V + VG++ Q AL+
Sbjct: 32 ALLGPSGSGKTTLLRLIAGLERPDSGTIL-FGGEDATD-VPVQERNVGFVFQHYALFRHM 89
Query: 82 SIKETMMYFGWIFGME---------TPEIDDRLQFLLNFLDL-------PSQ 117
++ + + FG+ EI ++ LL + L P+Q
Sbjct: 90 TVFDNVA-----FGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQ 136
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 51.6 bits (124), Expect = 6e-09
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
GLLG +G GKTTLL I ++G++ + G S V K +G + E LY
Sbjct: 32 GLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRK-IGVLFGERGLYARL 90
Query: 82 SIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
+ +E + YF + G+ EI R+ L L L
Sbjct: 91 TARENLKYFARLNGLSRKEIKARIAELSKRLQL 123
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 51.5 bits (124), Expect = 8e-09
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
L+G +G GK+TLL I+G + ++GEI + GKP K R+GY+PQ+ ++ F
Sbjct: 34 ALIGPNGAGKSTLLKAILGLLKPSSGEIKIF-GKPVRKRR--KRLRIGYVPQKSSVDRSF 90
Query: 82 --SIKETMMYFGW----IFGMETPEIDDRLQFLLNFLDL 114
++K+ ++ + F + +++ L + +
Sbjct: 91 PITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGM 129
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 50.7 bits (122), Expect = 1e-08
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 2 KTNTNTKKKKKKKK--------KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
KTN TK KK+ KK + YG LG +G GKTT + I+G + ++GEI G
Sbjct: 2 KTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDG 61
Query: 54 GKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETMMYFGWIFGMETPEID 102
+ +R+G + + Y + +E + + G+ ID
Sbjct: 62 KSYQKNIEAL--RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRID 108
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain
of nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein
NikA, two integral membrane components (NikB and NikC),
and two ATPase (NikD and NikE). The NikABCDE
transporter is synthesized under anaerobic conditions
to meet the increased demand for nickel resulting from
hydrogenase synthesis. The molecular mechanism of
nickel uptake in many bacteria and most archaea is not
known. Many other members of this ABC family are also
involved in the uptake of dipeptides and oligopeptides.
The oligopeptide transport system (Opp) is a
five-component ABC transport composed of a
membrane-anchored substrate binding proteins (SRP),
OppA, two transmembrane proteins, OppB and OppC, and
two ATP-binding domains, OppD and OppF.
Length = 228
Score = 51.0 bits (123), Expect = 1e-08
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG---KPGTKGSGVPGKRVGYMP 72
KK + GL+G SG GK+TL I+G + +G I G K + + K + +
Sbjct: 29 KKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVF 88
Query: 73 QE 74
Q+
Sbjct: 89 QD 90
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 50.1 bits (120), Expect = 2e-08
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
GLLG +G GKTT L + G + G V G + + +R+G++ LY
Sbjct: 34 TGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEAR-RRLGFVSDSTGLYDR 92
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
+ +E + YF ++G++ E+ RL+ L + L +
Sbjct: 93 LTARENLEYFAGLYGLKGDELTARLEELADRLGM 126
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 50.2 bits (121), Expect = 2e-08
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVP-----GKRVGY 70
+ + ++G SG GK+TLL+ + G + +GE+ + GK TK S K++G+
Sbjct: 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLIN-GKDLTKLSEKELAKLRRKKIGF 87
Query: 71 MPQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
+ Q L + ++ E + I G + LL L L
Sbjct: 88 VFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGL 131
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They
belong to the subfamily C of the ATP-binding cassette
(ABC) superfamily of transport proteins. The ABCC
subfamily contains transporters with a diverse
functional spectrum that includes ion transport, cell
surface receptor, and toxin secretion activities. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains, each composed of six
transmembrane (TM) helices, and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 171
Score = 48.9 bits (118), Expect = 3e-08
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYMPQE 74
K +K ++G SG GK+TLL ++ +GEI ++ G K + Y+PQ+
Sbjct: 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI-LIDGVDLRDLDLESLRKNIAYVPQD 84
Query: 75 IALYGEFSIKE 85
L+ +I+E
Sbjct: 85 PFLFSG-TIRE 94
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 50.0 bits (120), Expect = 3e-08
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALYGEF 81
L+G SG GKTT L I +GEI ++ G+ + V +R +GY+ Q+I L+
Sbjct: 32 LIGPSGSGKTTTLKMINRLIEPTSGEI-LIDGEDISDLDPVELRRKIGYVIQQIGLFPHL 90
Query: 82 SIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPSQS 118
++ E + + G + I R LL+ + L
Sbjct: 91 TVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSE 127
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 50.0 bits (120), Expect = 3e-08
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 19 KKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYMPQEIAL 77
++ L+G SG GK+TLL+ ++G G I + G P ++ ++PQ L
Sbjct: 349 ERVALVGPSGAGKSTLLNLLLGFVDPTEGSI-AVNGVPLADADADSWRDQIAWVPQHPFL 407
Query: 78 YGEFSIKE 85
+ +I E
Sbjct: 408 F-AGTIAE 414
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 49.6 bits (119), Expect = 4e-08
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 23 LLGASGCGKTTLLSCIVGRRRL---NTGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALY 78
L+G SG GKTT + I RL +GEI++ G+ + V +R +GY+ Q+I L+
Sbjct: 32 LIGPSGSGKTTTMKMI---NRLIEPTSGEIFI-DGEDIREQDPVELRRKIGYVIQQIGLF 87
Query: 79 GEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPSQS 118
+++E + + +I +R LL + L
Sbjct: 88 PHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAE 127
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems,
ATPase component [Inorganic ion transport and
metabolism].
Length = 345
Score = 49.7 bits (119), Expect = 4e-08
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVP--GKRVGYMPQEIALY 78
LLG SG GK+TLL I G + G I L G+ S + ++VG++ Q AL+
Sbjct: 32 ALLGPSGAGKSTLLRIIAGLETPDAGRI-RLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 49.1 bits (118), Expect = 4e-08
Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 9/98 (9%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-----VGYMPQEIA 76
GLLG +G GKTT IVG + ++G+I L G+ TK +P + +GY+PQE +
Sbjct: 30 GLLGPNGAGKTTTFYMIVGLVKPDSGKIL-LDGQDITK---LPMHKRARLGIGYLPQEAS 85
Query: 77 LYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
++ + +++E ++ I G+ E +++L+ LL +
Sbjct: 86 IFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHI 123
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 49.0 bits (118), Expect = 4e-08
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG---GKPGTKGSGVPGKRVGYMPQEIALY 78
++G SG GK+TLL IVG R ++GE+ + G +R+G + Q AL+
Sbjct: 30 AIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89
Query: 79 GEFSIKETMMYF 90
++ E + +
Sbjct: 90 DSLTVFENVAFP 101
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 48.3 bits (116), Expect = 9e-08
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG----GKPGTKGSGVPGKRVGYM 71
+K + ++G SG GK+TLL+ + G R +GE+ V G + + + +G++
Sbjct: 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFV 87
Query: 72 PQEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP 115
Q L + + E + + G+ E +R + LL + L
Sbjct: 88 FQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG 131
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the
SitABCD transporter of Shigella flexneri. Moreover
other uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 47.9 bits (115), Expect = 1e-07
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73
++G +G GK+TLL I+G + +G I V G + KR+GY+PQ
Sbjct: 29 AIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE-----RKRIGYVPQ 75
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 48.0 bits (115), Expect = 1e-07
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK-PGTKGSGVPGKRVGYMPQ 73
G++G SG GK+TL + G + ++G I + G K + + V + Q
Sbjct: 36 LGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQ 89
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 47.7 bits (114), Expect = 2e-07
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 25 GASGCGKTTLLSCIVGRRRLNTGEIWVLGGK-----PGTKGSGVPGKR-VGYMPQEIALY 78
G SGCGK+TLL I G + +G++++ G K P P +R VG + Q ALY
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMNDVP-------PAERGVGMVFQSYALY 87
Query: 79 GEFSIKETMMYFGW-IFGMETPEIDDRLQ 106
S+ E M FG + G + EI+ R+
Sbjct: 88 PHLSVAENMS-FGLKLAGAKKEEINQRVN 115
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA
ternary complex to the ribosomal A site by facilitated
release of the deacylated tRNA from the E site. The
reaction requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 46.3 bits (111), Expect = 2e-07
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73
+ GL+G +G GK+TLL I G + G + ++GY Q
Sbjct: 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG-----------STVKIGYFEQ 70
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 47.5 bits (113), Expect = 2e-07
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR--VGYMPQEIALYGE 80
LLG SGCGKTTLL + G + ++G I +L G+ T VP + + Q AL+
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSI-MLDGEDVTN---VPPHLRHINMVFQSYALFPH 56
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
+++E + + + + EI R+ L + L
Sbjct: 57 MTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQL 90
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase
components [Carbohydrate transport and metabolism].
Length = 338
Score = 47.3 bits (113), Expect = 3e-07
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALY 78
LLG SGCGK+TLL I G +GEI + G+ T P KR + + Q ALY
Sbjct: 34 LLGPSGCGKSTLLRMIAGLEEPTSGEIL-IDGRDVTDLP--PEKRGIAMVFQNYALY 87
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 47.1 bits (112), Expect = 4e-07
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG-------KPGTKGSGVPGKRV 68
K+ + +G++G SG GKTTL I G +GE+ V G KPG G G + +
Sbjct: 308 KEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYI 367
Query: 69 GYMPQEIALYGEFSIKETM 87
G + QE LY ++ + +
Sbjct: 368 GILHQEYDLYPHRTVLDNL 386
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 46.1 bits (110), Expect = 5e-07
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 25/122 (20%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLN--TGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
L+G SG GKTTLL + GR+ TGEI ++ G+P K + GY+ Q+
Sbjct: 38 LMGESGAGKTTLLDVLAGRKTAGVITGEI-LINGRPLDKNF---QRSTGYVEQQDVHSPN 93
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQF--------LLNFLDLP-----SQS-----RLVK 122
+++E + + + G+ + E RL + FLD P SQ+ R +K
Sbjct: 94 LTVREALRFSALLRGL-SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK 152
Query: 123 NL 124
L
Sbjct: 153 KL 154
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 46.1 bits (110), Expect = 5e-07
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALYGEF 81
LLG SGCGKTT L I G +G I++ GG+ T P R + + Q ALY
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYI-GGRDVTDLP--PKDRDIAMVFQNYALYPHM 87
Query: 82 SIKETMMYFGWIFGMETPEIDDRLQ 106
++ + + + + + EID+R++
Sbjct: 88 TVYDNIAFGLKLRKVPKDEIDERVR 112
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 45.7 bits (109), Expect = 7e-07
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRR---LNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIAL 77
+LG+SG GKTTLL I GR +G+I G+P K V Y+ Q+ L
Sbjct: 36 MAILGSSGSGKTTLLDAISGRVEGGGTTSGQILF-NGQPRKPDQ-FQ-KCVAYVRQDDIL 92
Query: 78 YGEFSIKETMMY 89
+++ET+ Y
Sbjct: 93 LPGLTVRETLTY 104
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 45.8 bits (109), Expect = 9e-07
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK---PGTKGSGVPG--KRVGYMPQEI 75
L G SG GKT+L++ I G R + G I L G+ KG +P +R+GY+ Q+
Sbjct: 27 TALFGPSGSGKTSLINMIAGLTRPDEGRI-ELNGRVLVDAEKGIFLPPEKRRIGYVFQDA 85
Query: 76 ALYGEFSIKETMMYFGWIFGMETPEIDDRLQFL 108
L+ ++++ + Y W M + D + L
Sbjct: 86 RLFPHYTVRGNLRYGMW-KSM-RAQFDQLVALL 116
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 45.6 bits (108), Expect = 1e-06
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
GL+G +G GKTTLL I G G + V G + +RV +PQ+ +L EF
Sbjct: 33 GLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92
Query: 82 SIKETM 87
+++ +
Sbjct: 93 DVRQVV 98
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 45.3 bits (108), Expect = 1e-06
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT-KGSGVPGKR--VGYMPQEIAL 77
+G++G SG GK+TLL I R +G ++V G + + R +G + Q L
Sbjct: 35 FGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNL 94
Query: 78 YGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP 115
++ E + + + G+ EI R+ LL + L
Sbjct: 95 LSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS 132
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of
CydCD, subfamily C. The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilis, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism.
Length = 178
Score = 44.6 bits (106), Expect = 1e-06
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75
K+ +K LLG SG GK+TLL + G + GEI L G P + + + Q
Sbjct: 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI-TLDGVPVSDLEKALSSLISVLNQRP 84
Query: 76 ALY 78
L+
Sbjct: 85 YLF 87
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 45.0 bits (107), Expect = 2e-06
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 19 KKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALY 78
++ +LG SG GK+TLL+ + G GE+ + G + +RV Q+ L+
Sbjct: 362 ERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLF 421
Query: 79 G 79
Sbjct: 422 D 422
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 44.9 bits (107), Expect = 2e-06
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT-KGSGVPG--KRVGYMPQEIALY 78
L+G SG GK+TLL C+ G +G + + G KG + +++G + Q+ L
Sbjct: 31 ALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90
Query: 79 GEFS 82
S
Sbjct: 91 ERLS 94
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 44.9 bits (107), Expect = 2e-06
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG----KPGTKGSGVPGKRVGYMPQEIA 76
GL+G SG GK+TL + G ++G I G G ++ + +
Sbjct: 320 LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379
Query: 77 LYGEFSIKETMMY-FGWIFGMETPEIDDRLQFLLNFLDLP 115
L ++ + + G E R+ LL + LP
Sbjct: 380 LNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP 419
Score = 43.7 bits (104), Expect = 5e-06
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 21 YGLLGASGCGKTTLLSCIVG----RRRLNTGEIWVLGGKPGTKGSGVP-----GKRVGYM 71
G++G SG GK+TL ++G R+ +GE+ +L G+ S GKR+ +
Sbjct: 38 LGIVGESGSGKSTLALALMGLLPEGGRITSGEV-ILDGRDLLGLSEREMRKLRGKRIAMI 96
Query: 72 PQE 74
Q+
Sbjct: 97 FQD 99
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 44.8 bits (107), Expect = 2e-06
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 22/94 (23%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM-P--------- 72
L+G SGCGK+TLL + G R+ +GEIW + G+ V + P
Sbjct: 35 LVGPSGCGKSTLLRMVAGLERITSGEIW------------IGGRVVNELEPADRDIAMVF 82
Query: 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDRLQ 106
Q ALY S++E M Y I GM EI++R+
Sbjct: 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVA 116
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 44.9 bits (106), Expect = 2e-06
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLN--TGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
+LG SG GK+TLL+ + GR + N TG I KP TK KR G++ Q+ LY
Sbjct: 99 VLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKP-TKQI---LKRTGFVTQDDILYPH 154
Query: 81 FSIKETMMY 89
+++ET+++
Sbjct: 155 LTVRETLVF 163
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two
domains with the N-terminal domain containing the
ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 232
Score = 44.1 bits (105), Expect = 3e-06
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVP-GKR-VGYMPQ 73
K+ + + LLG SGCGKTTLL I G +GEI +L GK T +P KR V + Q
Sbjct: 24 KEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI-LLDGKDIT---NLPPHKRPVNTVFQ 79
Query: 74 EIALY 78
AL+
Sbjct: 80 NYALF 84
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139)
is part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins
involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules.
Length = 222
Score = 43.6 bits (104), Expect = 4e-06
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRV----GYMPQEIAL 77
LLG +G GKTTLL I+G +G I G+ T P +R GY+P+ +
Sbjct: 30 ALLGRNGAGKTTLLKTIMGLLPPRSGSI-RFDGRDITGLP--PHERARAGIGYVPEGRRI 86
Query: 78 YGEFSIKE 85
+ E +++E
Sbjct: 87 FPELTVEE 94
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 42.3 bits (100), Expect = 4e-06
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 32 TTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVP--GKRVGYMPQEIALYGEFSIKETMMY 89
+TLL I G + +G I + G+ GT S KR+G + Q+ L+ E +++E + +
Sbjct: 1 STLLKLITGLLQPTSGTILLD-GEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF 59
Query: 90 FGWIFGMETPEIDDRLQFLLNFLDLPS 116
G+ E D R + L + LP
Sbjct: 60 -----GLRDKEADARAEEALERVGLPD 81
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 43.6 bits (104), Expect = 4e-06
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRV----GYMPQEIALY 78
LLG +G GKTTLL I+G R +G I + G+ T P +R Y+P+ ++
Sbjct: 34 LLGRNGAGKTTLLKTIMGLVRPRSGRI-IFDGEDITGLP--PHERARLGIAYVPEGRRIF 90
Query: 79 GEFSIKE 85
+++E
Sbjct: 91 PRLTVEE 97
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 43.2 bits (102), Expect = 5e-06
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 23/110 (20%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR--VGYMPQEIALYG 79
LLG SG GK+TLL I G + ++G I + G + V + +G++ Q AL+
Sbjct: 30 ALLGPSGSGKSTLLRIIAGLEQPDSGRIRL----NGQDATRVHARDRKIGFVFQHYALFK 85
Query: 80 EFSIKETMMYFGWIFGME-----TPEIDDRLQFLLNFLDL-------PSQ 117
++++ + FG+E +I R++ LL + L P+Q
Sbjct: 86 HLTVRDNIA-----FGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQ 130
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 43.4 bits (103), Expect = 6e-06
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVP-GKRVGYMPQ 73
K + L+GASG GK+TLL+ ++G GEI V G S K++ ++ Q
Sbjct: 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRV-NGIDLRDLSPEAWRKQISWVSQ 402
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 43.0 bits (102), Expect = 6e-06
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGK-------RVGYMPQ 73
+G++G SG GK+TL+ CI G R +G + V GT + + GK R+G + Q
Sbjct: 34 FGIIGRSGAGKSTLIRCINGLERPTSGSVLVD----GTDLTLLSGKELRKARRRIGMIFQ 89
Query: 74 EIALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL-------PSQ 117
L ++ E + I G+ EI++R+ LL + L P+Q
Sbjct: 90 HFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQ 140
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 42.9 bits (102), Expect = 8e-06
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
GL+G +G GK+TLL + G ++G + V G + S + G G+ P E
Sbjct: 52 GLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG-----RVSSLLGLGGGFNP-------EL 99
Query: 82 SIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
+ +E + G + G+ EID+++ ++ F +L
Sbjct: 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL 132
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit,
DevA family. Members of this protein family are found
mostly in the Cyanobacteria, but also in the
Planctomycetes. Cyanobacterial examples are involved in
heterocyst formation, by which some fraction of members
of the colony undergo a developmental change and become
capable of nitrogen fixation. The DevBCA proteins are
thought export of either heterocyst-specific
glycolipids or an enzyme essential for formation of the
laminated layer found in heterocysts.
Length = 220
Score = 42.7 bits (101), Expect = 1e-05
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
L G SG GKTTLL+ I G R + G + VLG
Sbjct: 36 LTGPSGSGKTTLLTLIGGLRSVQEGSLKVLG 66
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 42.4 bits (100), Expect = 1e-05
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75
K YGLLG +G GK+TLL I G R +GEI + G P T+ ++G + +
Sbjct: 24 PKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI-IFDGHPWTRKD---LHKIGSLIESP 79
Query: 76 ALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
LY + +E + + G+ ID+ +LN +DL
Sbjct: 80 PLYENLTARENLKVHTTLLGLPDSRIDE----VLNIVDL 114
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 42.4 bits (101), Expect = 1e-05
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 33/115 (28%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA----- 76
GL+G +G GKTTL + I G R +G + + G+ T G P EIA
Sbjct: 30 GLIGPNGAGKTTLFNLISGFLRPTSGSV-LFDGEDIT----------GLPPHEIARLGIG 78
Query: 77 -------LYGEFSIKETMM----------YFGWIFGMETPEIDDRLQFLLNFLDL 114
L+ E ++ E +M E E +R + LL + L
Sbjct: 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 42.4 bits (100), Expect = 1e-05
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
+G LG +G GKTT + + R +G V G + V + +G +PQ ++ +
Sbjct: 22 FGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVR-RSIGIVPQYASVDED 80
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
+ +E + G ++G+ E ++R + LL +L
Sbjct: 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFEL 114
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 41.7 bits (99), Expect = 2e-05
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRV----GYMPQ 73
+LG +G GKTTLL ++G + +G I L G+ TK P +R Y+PQ
Sbjct: 31 VLGRNGVGKTTLLKTLMGLLPVKSGSI-RLDGEDITKLP--PHERARAGIAYVPQ 82
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 41.7 bits (99), Expect = 2e-05
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTK 59
++G SG GK+TLL C+ G ++G I V G G K
Sbjct: 33 IIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDK 69
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 41.2 bits (97), Expect = 2e-05
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 25 GASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIK 84
G +G GKTTLL + G R ++GE+ G + P + + Y+ L E S
Sbjct: 33 GPNGIGKTTLLRILAGLLRPDSGEV-RWNGTALAEQRDEPHRNILYLGHLPGLKPELSAL 91
Query: 85 ETMMYFGWIFGMETPEIDDRLQF--LLNFLDLP 115
E + ++ I G I+D L L F DLP
Sbjct: 92 ENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLP 124
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 41.3 bits (98), Expect = 2e-05
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQE 74
K + ++G G GK++LLS ++G +G + V + Y+ QE
Sbjct: 29 PKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSV-------------PGSIAYVSQE 74
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 41.4 bits (97), Expect = 3e-05
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ--EIALYG 79
GLLG +G GKTTLL I+G G + V G KG + +GY+PQ E A
Sbjct: 10 GLLGPNGAGKTTLLRAILGLIPPAKGTVKV-AGASPGKGW----RHIGYVPQRHEFAWDF 64
Query: 80 EFSIKETMM 88
S+ T+M
Sbjct: 65 PISVAHTVM 73
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 41.4 bits (98), Expect = 3e-05
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVP-GKR----VGYMPQEIA 76
GLLG +G GKTT IVG R ++G+I + + +P KR +GY+PQE +
Sbjct: 34 GLLGPNGAGKTTTFYMIVGLVRPDSGKILL----DDEDITKLPMHKRARLGIGYLPQEAS 89
Query: 77 LYGEFSIKETMM 88
++ + ++++ +M
Sbjct: 90 IFRKLTVEDNIM 101
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the
uptake of monosaccharides, such as pentoses (such as
xylose, arabinose, and ribose) and hexoses (such as
xylose, arabinose, and ribose), that cannot be broken
down to simple sugars by hydrolysis. In members of
Carb_Monos family the single hydrophobic gene product
forms a homodimer, while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it
is assumed that two copies of the ABC domains are
present in the assembled transporter.
Length = 182
Score = 40.9 bits (97), Expect = 3e-05
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR----VGYMP---QE 74
G+ G G G+T L + G R +GEI L GKP T+ S P + Y+P +
Sbjct: 30 GIAGLVGNGQTELAEALFGLRPPASGEIT-LDGKPVTRRS--PRDAIRAGIAYVPEDRKR 86
Query: 75 IALYGEFSIKE 85
L + S+ E
Sbjct: 87 EGLVLDLSVAE 97
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 41.2 bits (97), Expect = 4e-05
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFS 82
LLG SGCGKTT+L + G + G+I++ G+ T S + + + + Q AL+ S
Sbjct: 37 LLGPSGCGKTTVLRLVAGLEKPTEGQIFI-DGEDVTHRS-IQQRDICMVFQSYALFPHMS 94
Query: 83 IKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
+ E + Y + G+ E R++ L +DL
Sbjct: 95 LGENVGYGLKMLGVPKEERKQRVKEALELVDL 126
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 41.1 bits (97), Expect = 4e-05
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 27/83 (32%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS----GVP---------GKRV 68
G++G SG GK+TL +VG IW P T GS G G+ +
Sbjct: 366 GIIGPSGSGKSTLARLLVG--------IW-----PPTSGSVRLDGADLRQWDREQLGRHI 412
Query: 69 GYMPQEIALYGEFSIKETMMYFG 91
GY+PQ++ L+ + +I E + FG
Sbjct: 413 GYLPQDVELF-DGTIAENIARFG 434
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 40.8 bits (96), Expect = 5e-05
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 27/83 (32%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS----GVP---------GKRV 68
++G SG GK+TL IVG IW P T GS G GK +
Sbjct: 348 AIIGPSGSGKSTLARLIVG--------IW-----PPTSGSVRLDGADLKQWDRETFGKHI 394
Query: 69 GYMPQEIALYGEFSIKETMMYFG 91
GY+PQ++ L+ ++ E + FG
Sbjct: 395 GYLPQDVELF-PGTVAENIARFG 416
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport
and binding proteins, Cations and iron carrying
compounds].
Length = 190
Score = 40.5 bits (95), Expect = 5e-05
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP---GTKGSGVPGKRVGYMPQE 74
LLGA+G GK+TLL + G R +G + ++ G+P KG +RVG + Q+
Sbjct: 22 ALLGANGAGKSTLLLHLNGLLRPQSGAV-LIDGEPLDYSRKGLLERRQRVGLVFQD 76
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 40.7 bits (96), Expect = 6e-05
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEI 49
LLG SGCGKTT+L I G ++G I
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPDSGRI 71
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 40.7 bits (96), Expect = 6e-05
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 19/79 (24%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-------- 67
+K ++G SG GK+TLL ++G + G I + GV
Sbjct: 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL---------DGVDLNDIDLASLRR 547
Query: 68 -VGYMPQEIALYGEFSIKE 85
VGY+ Q+ L+ SI+E
Sbjct: 548 QVGYVLQDPFLFS-GSIRE 565
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 40.2 bits (95), Expect = 7e-05
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN--------TGEIWVLGGKPGTKGSGVPG-- 65
K + L+G SGCGK+TLL + RLN GE+ + G V
Sbjct: 24 PKGEITALIGPSGCGKSTLLRLL---NRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80
Query: 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGM-ETPEIDDRLQFLL 109
+RVG + Q+ + SI + + Y + G+ E+D+R++ L
Sbjct: 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEAL 124
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 40.4 bits (95), Expect = 7e-05
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVG-YM-PQEIALYGE 80
LLG +G GK+TL+ I G ++G + +GG P + + ++G Y+ PQE L+
Sbjct: 42 LLGGNGAGKSTLMKIIAGIVPPDSGTL-EIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100
Query: 81 FSIKETMMYFGWIFGMETPEID-DRLQFLL 109
S+KE ++ FG+ + +++ LL
Sbjct: 101 LSVKENIL-----FGLPKRQASMQKMKQLL 125
Score = 27.3 bits (61), Expect = 2.5
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIW 50
GL G G G+T L + G R G I
Sbjct: 293 GLAGVVGAGRTELAETLYGLRPARGGRIM 321
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 259
Score = 40.1 bits (94), Expect = 8e-05
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIAL 77
+LG SGCGKTTLL+ I G + G I L G+ PG G + Q AL
Sbjct: 36 VLGPSGCGKTTLLNLIAGFVTPSRGSI-QLNGRRIEG----PGAERGVVFQNEAL 85
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 39.9 bits (94), Expect = 9e-05
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVG-----RRRLNTGEIWVLGGKPGTKGSG-----VPG 65
KK + G++G SG GK+ L I+G R+ GEI + GK S + G
Sbjct: 29 KKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI-LFDGKDLLSLSEKELRKIRG 87
Query: 66 KRVGYMPQE--IALYGEFSIKETMM--YFGWIFGMETPEIDDRLQFLLNFLDLPSQSRLV 121
K + + Q+ +L +I + + G+ E +R LL + +P R +
Sbjct: 88 KEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRL 147
Query: 122 K 122
K
Sbjct: 148 K 148
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to
the molybdate transporter. Archaeal protein closely
related to ModC. ModC is an ABC-type transporter and
the ATPase component of a molybdate transport system
that also includes the periplasmic binding protein ModA
and the membrane protein ModB. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 235
Score = 39.6 bits (93), Expect = 1e-04
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALYGEF 81
+LG +G GK+ LL I G + ++G+I +L GK T P KR + Y+PQ AL+
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPDSGKI-LLNGKDITNLP--PEKRDISYVPQNYALFPHM 86
Query: 82 SIKETMMY 89
++ + + Y
Sbjct: 87 TVYKNIAY 94
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 39.9 bits (94), Expect = 1e-04
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Query: 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEI-WVLGGKPGTKGSGVPGKRVGYMPQEIALY 78
+ ++G +G GKTTLL +VG ++G + W +GY Q+ A
Sbjct: 347 RLAIIGENGVGKTTLLRTLVGELEPDSGTVKW------------SENANIGYYAQDHA-- 392
Query: 79 GEFSIKETMMYFGWIFGMETPEIDD 103
+F T+ F W+ D+
Sbjct: 393 YDFENDLTL--FDWMSQWRQEGDDE 415
Score = 36.4 bits (85), Expect = 0.002
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 17/72 (23%)
Query: 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGV---PGKRVGYMPQEIA 76
+YGL+GA+GCGK+T + +LGG V P +R+G + Q+
Sbjct: 29 RYGLIGANGCGKSTFMK--------------ILGGDLEPSAGNVSLDPNERLGKLRQDQF 74
Query: 77 LYGEFSIKETMM 88
+ EF++ +T++
Sbjct: 75 AFEEFTVLDTVI 86
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the
uptake of monosaccharides, such as pentoses (such as
xylose, arabinose, and ribose) and hexoses (such as
xylose, arabinose, and ribose), that cannot be broken
down to simple sugars by hydrolysis. Pentoses include
xylose, arabinose, and ribose. Important hexoses
include glucose, galactose, and fructose. In members of
the Carb_monos family, the single hydrophobic gene
product forms a homodimer while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter.
Length = 163
Score = 38.9 bits (92), Expect = 1e-04
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
+ LLG +G GK+TL+ + G + ++GEI V G
Sbjct: 29 HALLGENGAGKSTLMKILSGLYKPDSGEILVDG 61
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 39.3 bits (93), Expect = 1e-04
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQE 74
K G+LG +G GK+TLL + G + GE PG +VGY+PQE
Sbjct: 35 KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPA-----------PGIKVGYLPQE 78
Score = 30.5 bits (70), Expect = 0.21
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEI 49
G++G +G GK+TL I G+ + ++G I
Sbjct: 354 GIIGPNGAGKSTLFKMITGQEQPDSGTI 381
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 39.2 bits (92), Expect = 2e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
++G SG GK+TLL + G +GEI G
Sbjct: 34 AIIGPSGAGKSTLLRSLNGLVDPTSGEILFNG 65
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 39.1 bits (92), Expect = 2e-04
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIAL-Y 78
K ++G G GK+TLL + G + +G + + G + +GY+PQ++ L Y
Sbjct: 32 KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY 91
Query: 79 GEFSIKETMMYFGWIFGMETPEIDDR 104
G ++++ + P DD
Sbjct: 92 G--TLRDNITLGA-------PLADDE 108
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 39.0 bits (91), Expect = 2e-04
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
G LG +G GK+T + I G ++G + V G + + + +GY+P+ LY +
Sbjct: 32 GFLGPNGAGKSTTMKIITGYLPPDSGSVQVCG-EDVLQNPKEVQRNIGYLPEHNPLYLDM 90
Query: 82 SIKETMMYFGWIFGMETPEIDDRLQFLL 109
++E + + I+GM+ + R++ ++
Sbjct: 91 YVREYLQFIAGIYGMKGQLLKQRVEEMI 118
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 38.7 bits (90), Expect = 2e-04
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFS 82
+ G SGCGK+TLL + +G + G T ++V Y Q AL+G+ +
Sbjct: 34 ITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-T 92
Query: 83 IKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP 115
+++ ++ F W P+ L L F LP
Sbjct: 93 VEDNLI-FPWQIRNRRPDRAAALDLLARF-ALP 123
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 38.9 bits (91), Expect = 2e-04
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
+LG +G GK+TLL + G ++GE+ + G + + +PQ +L F
Sbjct: 31 AILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90
Query: 82 SIKET--MMYFGWIFGMETPE 100
+++E M G E E
Sbjct: 91 TVQEVVQMGRIPHRSGREPEE 111
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 39.0 bits (91), Expect = 2e-04
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
+ K ++G SG GKTTLL I G+ + GEI G
Sbjct: 32 RGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDG 68
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 38.7 bits (91), Expect = 2e-04
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75
L G SG GK+TLL I G R G+I V G ++ + G+ + ++ ++I
Sbjct: 33 LTGPSGAGKSTLLKLIYGEERPTRGKILV-NGHDLSR---LKGREIPFLRRQI 81
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD
family. Members of this protein family have two copies
of the ABC transporter ATP-binding cassette, but are
found outside the common ABC transporter operon
structure that features integral membrane permease
proteins and substrate-binding proteins encoded next to
the ATP-binding cassette (ABC domain) protein. The
member protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 38.8 bits (91), Expect = 2e-04
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYG 79
K G+LG +G GK+TLL + G + GE PG +VGY+PQE L
Sbjct: 33 KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP-----------APGIKVGYLPQEPQLDP 81
Query: 80 EFSIKETMM 88
+++E +
Sbjct: 82 TKTVRENVE 90
Score = 30.3 bits (69), Expect = 0.20
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEI 49
G++G +G GK+TL I G+ + ++G I
Sbjct: 352 GVIGPNGAGKSTLFRMITGQEQPDSGTI 379
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 38.5 bits (90), Expect = 2e-04
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIAL-YGEF 81
L+G SG GK+TLL I +G I V G S + G+ + Y+ ++I + + +F
Sbjct: 32 LVGPSGAGKSTLLKLIYKEELPTSGTIRV----NGQDVSDLRGRAIPYLRRKIGVVFQDF 87
Query: 82 ------SIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPSQSR 119
++ E + + + G+ EI R+ L + L + R
Sbjct: 88 RLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR 131
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 38.7 bits (90), Expect = 3e-04
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVP--GKRVGYMPQE 74
K + + LLGASGCGK+TLL + G + G+I +L G S VP + + M Q
Sbjct: 44 KGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI-MLDGV---DLSHVPPYQRPINMMFQS 99
Query: 75 IALYGEFSIKETMMYFGWIFGME-----TPEIDDRLQFLL 109
AL+ ++++ + FG++ EI R+ +L
Sbjct: 100 YALFPHMTVEQNIA-----FGLKQDKLPKAEIASRVNEML 134
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 38.5 bits (90), Expect = 3e-04
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNT---GEIWVLGGKP-GTKGSGVPGKRVGYMPQ 73
L+G +GCGK+TLL C RL T G + LG KP S +R+ +PQ
Sbjct: 33 LIGPNGCGKSTLLKCFA---RLLTPQSGTV-FLGDKPISMLSSRQLARRLALLPQ 83
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 38.2 bits (89), Expect = 3e-04
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI--ALYG 79
GLLG SGCGK+TL ++G + G + G+ + + Q +
Sbjct: 41 GLLGRSGCGKSTLARLLLGLEKPAQGTVS-FRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99
Query: 80 EFSIKETMMYFGWIFG--------METPEIDDRLQFLLNFLDLPSQ 117
+ + T+ I G ++ E R+ LL+ + L S+
Sbjct: 100 AVNPRMTV---RQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE 142
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 38.3 bits (90), Expect = 4e-04
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR----VGYMP---Q 73
GL+GA G+T L + G R ++GEI L GKP S P + Y+P +
Sbjct: 291 AGLVGA---GRTELARALFGARPASSGEIL-LDGKPVRIRS--PRDAIKAGIAYVPEDRK 344
Query: 74 EIALYGEFSIKETM 87
L + SI E +
Sbjct: 345 SEGLVLDMSIAENI 358
Score = 35.9 bits (84), Expect = 0.003
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR----VGYMPQEIAL 77
LLG +G GK+TL+ + G ++GEI + GKP S P + + QE++L
Sbjct: 38 ALLGENGAGKSTLMKILSGVYPPDSGEILI-DGKPVAFSS--PRDALAAGIATVHQELSL 94
Query: 78 YGEFSI-------KETMMYFGWI 93
S+ +E FG I
Sbjct: 95 VPNLSVAENIFLGREPTRRFGLI 117
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 37.9 bits (89), Expect = 4e-04
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 11/46 (23%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN--------TGEIWVLG 53
K K L+G SGCGK+TLL C+ R+N GE+ + G
Sbjct: 31 PKNKVTALIGPSGCGKSTLLRCL---NRMNDLIPGARVEGEVLLDG 73
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 38.1 bits (89), Expect = 4e-04
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 19 KKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56
+K +LG SG GK+TLL + G G I L G
Sbjct: 365 EKVAILGRSGSGKSTLLQLLAGAWDPQQGSI-TLNGVE 401
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 38.0 bits (89), Expect = 4e-04
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFS 82
LLG +G GK+TL S + G+I V G + R+G + Q+ L + S
Sbjct: 32 LLGPNGAGKSTLFSLLTRLYVAQEGQISVA-GHDLRRAPRAALARLGVVFQQPTLDLDLS 90
Query: 83 IKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
+++ + Y + G+ E R+ LL L L
Sbjct: 91 VRQNLRYHAALHGLSRAEARARIAELLARLGL 122
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 37.9 bits (88), Expect = 5e-04
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLN---TGEIWVLGGKPGTKGSGVPGKR--VGYMPQEIAL 77
L+G SGCGK+TLLS ++G TGE+W+ + +P + +G + Q+ L
Sbjct: 33 LMGPSGCGKSTLLSWMIGALAGQFSCTGELWL----NEQRLDMLPAAQRQIGILFQDALL 88
Query: 78 YGEFSIKETMMY 89
+ S+ + +++
Sbjct: 89 FPHLSVGQNLLF 100
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 38.1 bits (89), Expect = 5e-04
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGK--RVGYMPQEIALY 78
LLG SG GKTTLL I G +G I GT S + + +VG++ Q AL+
Sbjct: 33 LLGPSGSGKTTLLRIIAGLEHQTSGHI----RFHGTDVSRLHARDRKVGFVFQHYALF 86
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 37.9 bits (89), Expect = 5e-04
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 28/95 (29%)
Query: 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGV------PG---KRVGY 70
K ++G G GK+TLL ++G + G + + GV P + +GY
Sbjct: 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL---------DGVDIRQIDPADLRRNIGY 543
Query: 71 MPQEIAL-YGEFSIKETMMYFGWIFGMETPEIDDR 104
+PQ+ L YG ++++ + + P DD
Sbjct: 544 VPQDPRLFYG--TLRDNIA-------LGAPYADDE 569
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 37.6 bits (88), Expect = 5e-04
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT--KGSGVPG--KRVGYMPQEIALY 78
L G SG GKTTLL + G + G++ + G+ +G +P +R+G + Q+ L
Sbjct: 33 LTGPSGAGKTTLLKLLYGALTPSRGQVRI-AGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91
Query: 79 GEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP 115
+ ++ E + + G + EI R+ L + L
Sbjct: 92 PDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE 128
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 38.2 bits (89), Expect = 5e-04
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPG------KRVGYMPQEIA 76
L+GASG GKTTLL+ + R+ TG I G + + +GY+ Q+
Sbjct: 794 LMGASGAGKTTLLNVLAE--RVTTGVI-----TGGDRLVNGRPLDSSFQRSIGYVQQQDL 846
Query: 77 LYGEFSIKETMMY 89
+++E++ +
Sbjct: 847 HLPTSTVRESLRF 859
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 37.6 bits (88), Expect = 6e-04
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTK 59
K+ + GL+G SGCGK+TL I+G +GEI GK TK
Sbjct: 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL-FEGKDITK 79
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 37.3 bits (87), Expect = 7e-04
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 24/79 (30%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG---VPGKRV---------GY 70
++G+SG GKTTL++ + R G KGSG + G + Y
Sbjct: 56 VMGSSGAGKTTLMNALAFRSP------------KGVKGSGSVLLNGMPIDAKEMRAISAY 103
Query: 71 MPQEIALYGEFSIKETMMY 89
+ Q+ +++E +M+
Sbjct: 104 VQQDDLFIPTLTVREHLMF 122
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 37.5 bits (88), Expect = 8e-04
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56
K +K LLG +GCGK+TLL + GEI L G+P
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL-LNGQP 403
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 36.8 bits (86), Expect = 0.001
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEI 49
G++G SG GKTTLL+ + R + GE+
Sbjct: 36 GIVGESGSGKTTLLNALSARLAPDAGEV 63
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 37.0 bits (86), Expect = 0.001
Identities = 19/33 (57%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 24 LGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56
LG SGCGKTTLL+ I G G I L GKP
Sbjct: 33 LGPSGCGKTTLLNLIAGFVPYQHGSI-TLDGKP 64
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 37.3 bits (86), Expect = 0.001
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
+GLLG +G GKTT + G + +G+ V G T S V + +GY PQ A+
Sbjct: 1968 FGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDV-HQNMGYCPQFDAIDDL 2026
Query: 81 FSIKETMMYFGWIFGMETPEID 102
+ +E + + + G+ EI+
Sbjct: 2027 LTGREHLYLYARLRGVPAEEIE 2048
Score = 35.4 bits (81), Expect = 0.005
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
LG +G GKTT LS + G +G + V GGK + +G PQ L+
Sbjct: 960 AFLGHNGAGKTTTLSILTGLLPPTSGTVLV-GGKDIETNLDAVRQSLGMCPQHNILFHHL 1018
Query: 82 SIKETMMYFGWIFGMETPEIDDRLQFLL 109
++ E ++++ + G E ++ +L
Sbjct: 1019 TVAEHILFYAQLKGRSWEEAQLEMEAML 1046
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase
component [Coenzyme metabolism].
Length = 231
Score = 36.9 bits (86), Expect = 0.001
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
+LG SG GK+TLL+ I G +GEI + G
Sbjct: 30 ILGPSGAGKSTLLNLIAGFETPASGEILING 60
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 36.7 bits (86), Expect = 0.001
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPG---KRVGYMPQEIALY 78
+LG +G GK+TLL + G ++GE+ L G+P P +R +PQ +L
Sbjct: 32 AILGPNGAGKSTLLRALSGELSPDSGEVR-LNGRP--LADWSPAELARRRAVLPQHSSLS 88
Query: 79 GEFSIKE 85
F+++E
Sbjct: 89 FPFTVEE 95
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 36.7 bits (85), Expect = 0.001
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEI 49
G++G SG GKTTLL CI GR + G +
Sbjct: 36 GIVGESGSGKTTLLKCISGRLTPDAGTV 63
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 36.6 bits (85), Expect = 0.001
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG----SGVPGKRVGYMPQEIAL 77
++G SG GK+TLL+ + G ++GE+ +LG + + + VG++ Q L
Sbjct: 40 AIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHL 99
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the
ATP-binding cassette component of cobalt transport
system. Domain II of the ABC component of a cobalt
transport family found in bacteria, archaea, and
eukaryota. The transition metal cobalt is an essential
component of many enzymes and must be transported into
cells in appropriate amounts when needed. The CbiMNQO
family ABC transport system is involved in cobalt
transport in association with the cobalamin (vitamin
B12) biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are
encoded by the conserved gene cluster cbiMNQO. Both the
CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems.
Length = 205
Score = 36.1 bits (84), Expect = 0.002
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQE 74
L G +G GKTTL + G + ++G I +L GKP + K +GY+ Q+
Sbjct: 29 IALTGKNGAGKTTLAKILAGLIKESSGSI-LLNGKP--IKAKERRKSIGYVMQD 79
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEI 49
L G SG GK+TLL+ ++ L TGEI
Sbjct: 40 LAGQSGVGKSTLLNALLPELDLRTGEI 66
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 35.8 bits (84), Expect = 0.002
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEI 49
L+G SG GK+TLL+ ++ L TGEI
Sbjct: 90 LVGQSGVGKSTLLNALLPELVLATGEI 116
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein
PhnK. Members of this family are the PhnK protein of
C-P lyase systems for utilization of phosphonates.
These systems resemble phosphonatase-based systems in
having a three component ABC transporter, where
TIGR01097 is the permease, TIGR01098 is the
phosphonates binding protein, and TIGR02315 is the
ATP-binding cassette (ABC) protein. They differ,
however, in having, typically, ten or more additional
genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and
the adjacent-encoded PhnL resemble transporter
ATP-binding proteins but are suggested, based on
mutatgenesis studies, to be part of this complex rather
than part of a transporter per se [Central intermediary
metabolism, Phosphorus compounds].
Length = 253
Score = 36.0 bits (83), Expect = 0.002
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEI 49
G++G SG GK+TLL C+ GR + G
Sbjct: 33 GIVGESGSGKSTLLGCLAGRLAPDHGTA 60
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 35.9 bits (84), Expect = 0.002
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
+G++GASG GK+TL+ CI R +G + V G
Sbjct: 34 FGVIGASGAGKSTLIRCINLLERPTSGRVLVDG 66
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ
are the ATP-binding components of the bacterial
periplasmic histidine and glutamine permeases,
respectively. Histidine permease is a multi-subunit
complex containing the HisQ and HisM integral membrane
subunits and two copies of HisP. HisP has properties
intermediate between those of integral and peripheral
membrane proteins and is accessible from both sides of
the membrane, presumably by its interaction with HisQ
and HisM. The two HisP subunits form a homodimer within
the complex. The domain structure of the amino acid
uptake systems is typical for prokaryotic extracellular
solute binding protein-dependent uptake systems. All of
the amino acid uptake systems also have at least one,
and in a few cases, two extracellular solute binding
proteins located in the periplasm of Gram-negative
bacteria, or attached to the cell membrane of
Gram-positive bacteria. The best-studied member of the
PAAT (polar amino acid transport) family is the HisJQMP
system of S. typhimurium, where HisJ is the
extracellular solute binding proteins and HisP is the
ABC protein.
Length = 213
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
++G SG GK+TLL CI ++G I + G
Sbjct: 31 IIGPSGSGKSTLLRCINLLEEPDSGTIIIDG 61
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 35.6 bits (83), Expect = 0.002
Identities = 22/96 (22%), Positives = 31/96 (32%), Gaps = 26/96 (27%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVG-YMPQEIALYG 79
L+G SG GKTTL ++ G G G V Y P+E
Sbjct: 2 IALVGHSGSGKTTLAEALL-----------YATGAIDRLGRVEDGNTVSDYDPEEKK-RK 49
Query: 80 EFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP 115
SI+ ++ W +N +D P
Sbjct: 50 -MSIETSVAPLEW---NGHK---------INLIDTP 72
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 35.7 bits (83), Expect = 0.003
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVP--GKRVGYMP 72
+K ++ L+G +G GK+TLL + G + +GE+ V G + + ++VG +
Sbjct: 27 IEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV-DGLDTSSEKSLLELRQKVGLVF 85
Query: 73 Q 73
Q
Sbjct: 86 Q 86
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 35.8 bits (83), Expect = 0.003
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLN--------TGEIWVLGGKPGTKGSGVPG--K 66
K + +G SGCGK+TLL C R+N GEI + G K V +
Sbjct: 50 KNRVTAFIGPSGCGKSTLLRCF---NRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRR 106
Query: 67 RVG 69
RVG
Sbjct: 107 RVG 109
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 35.2 bits (82), Expect = 0.003
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 21/110 (19%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP-----QEIA 76
GL+G +G GKTTL + I G + ++G + + G+ T G+P R+ + Q
Sbjct: 34 GLIGPNGAGKTTLFNLITGFYKPSSGTV-IFRGRDIT---GLPPHRIARLGIARTFQITR 89
Query: 77 LYGEFSIKETMM-------YFGWIFGM-----ETPEIDDRLQFLLNFLDL 114
L+ ++ E + + G E E +R + LL F+ L
Sbjct: 90 LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL 139
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein
PhnL. Members of this family are the PhnL protein of
C-P lyase systems for utilization of phosphonates.
These systems resemble phosphonatase-based systems in
having a three component ABC transporter, where
TIGR01097 is the permease, TIGR01098 is the
phosphonates binding protein, and TIGR02315 is the
ATP-binding cassette (ABC) protein. They differ,
however, in having, typically, ten or more additional
genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a
transporter per se.
Length = 224
Score = 35.1 bits (81), Expect = 0.005
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWV 51
L G SG GK+TLL + ++G I V
Sbjct: 38 ALSGPSGAGKSTLLKSLYANYLPDSGRILV 67
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 35.0 bits (81), Expect = 0.005
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEI 49
LLG SGCGK+TL +VG + G +
Sbjct: 42 ALLGRSGCGKSTLARLLVGLESPSQGNV 69
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 34.9 bits (80), Expect = 0.005
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALYGE 80
GLLG +G GKTT +VG + G I + +R +GY+PQE +++
Sbjct: 33 GLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92
Query: 81 FSIKETMM 88
S+ + +M
Sbjct: 93 LSVYDNLM 100
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 34.9 bits (81), Expect = 0.005
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALYGEF 81
+LG SG GK+TLL+ I G +G + L G+ T P +R V + QE L+
Sbjct: 30 ILGPSGAGKSTLLNLIAGFLTPASGSLT-LNGQDHTTTP--PSRRPVSMLFQENNLFSHL 86
Query: 82 SIKE 85
++ +
Sbjct: 87 TVAQ 90
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 34.6 bits (80), Expect = 0.006
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 23 LLGASGCGKTTLLSCIVGR-RRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
++G +G GK+TLLS ++ R + ++GEI + G + + S K++ + QE +
Sbjct: 32 IIGPNGAGKSTLLS-MMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRL 90
Query: 82 SIKETMMYFG 91
++++ + FG
Sbjct: 91 TVRDLVG-FG 99
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 34.8 bits (80), Expect = 0.007
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP-GTKGSGVPGKRVGYMPQEI 75
GL+G +G GK+TLL ++GR + + +L +P + S ++V Y+PQ++
Sbjct: 41 GLIGHNGSGKSTLLK-MLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQL 94
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 34.7 bits (80), Expect = 0.007
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG----KPGTKGSGVPGK---------RVG 69
++G+SG GK+T L CI + + G I V G K G P R+G
Sbjct: 37 IIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLG 96
Query: 70 YMPQEIALYGEFSIKETMM 88
+ Q L+ ++ E ++
Sbjct: 97 MVFQHFNLWSHMTVLENVI 115
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 34.3 bits (79), Expect = 0.007
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWV 51
L G SG GK+TLL + + G+I V
Sbjct: 42 LHGPSGSGKSTLLRSLYANYLPDEGQILV 70
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 34.4 bits (80), Expect = 0.008
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56
LLG +G GK+TL+ + G + ++GEI + GK
Sbjct: 34 ALLGENGAGKSTLMKILFGLYQPDSGEI-RVDGKE 67
Score = 31.7 bits (73), Expect = 0.060
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR---VGYMPQE---I 75
G+ G +G G++ L+ I G R+ +G I L GK +R + Y+P++
Sbjct: 288 GIAGVAGNGQSELVEAISGLRKPASGRIL-LNGKDVLGRLSPRERRRLGLAYVPEDRHGH 346
Query: 76 ALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPSQSRLVKNL 124
L + S+ E + + G D + FLD + + + L
Sbjct: 347 GLVLDLSLAENL-----VLGR----HDKKPFSRGGFLDRRAIRKFAREL 386
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 34.3 bits (79), Expect = 0.008
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 11/43 (25%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN--------TGEIW 50
+K K L+G SG GK+T L + R+N TG+I
Sbjct: 44 EKNKITALIGPSGSGKSTYLRSL---NRMNDTIDIARVTGQIL 83
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 34.2 bits (79), Expect = 0.008
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP--- 72
++++ L+G +G GKTT+ +C+ G + G I +L G+ G+PG ++ M
Sbjct: 29 REQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI-LLRGQHIE---GLPGHQIARMGVVR 84
Query: 73 --QEIALYGEFSIKETMM 88
Q + L+ E ++ E ++
Sbjct: 85 TFQHVRLFREMTVIENLL 102
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding
protein; Provisional.
Length = 272
Score = 34.5 bits (79), Expect = 0.008
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73
L+G +G GK+TL ++G RL +G+I +L G+P + + V Y+PQ
Sbjct: 38 LVGVNGSGKSTLFKALMGFVRLASGKISIL-GQPTRQ--ALQKNLVAYVPQ 85
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1
and is thought to have a role in resistance to
oxidative stress. Interestingly, subfamily B is more
closely related to the carboxyl-terminal component of
subfamily C than the two halves of ABCC molecules are
with one another.
Length = 238
Score = 34.1 bits (79), Expect = 0.009
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL---NTGEIWVLGGKPGTKGSGVPGKR--VGY 70
K L+G+SGCGK+T++S + R +GEI +L G + + R +G
Sbjct: 27 PPGKTVALVGSSGCGKSTVVSLL---ERFYDPTSGEI-LLDGVD-IRDLNLRWLRSQIGL 81
Query: 71 MPQEIALYGEFSIKETMMY 89
+ QE L+ + +I E + Y
Sbjct: 82 VSQEPVLF-DGTIAENIRY 99
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 34.1 bits (78), Expect = 0.009
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
L G SG GK+TLL I G R + G+IW G
Sbjct: 33 LTGHSGAGKSTLLKLICGIERPSAGKIWFSG 63
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 34.2 bits (78), Expect = 0.009
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNT---GEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYG 79
++G +GCGK+TLL + RL T G +W+ G S +R+G + Q G
Sbjct: 38 IIGPNGCGKSTLLRTL---SRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPG 94
Query: 80 EFSIKE 85
+ +++E
Sbjct: 95 DITVQE 100
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 34.2 bits (79), Expect = 0.009
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGY-MPQEIALYGE 80
G +G +G GKTT L + G + +GE+ V G P + +R+G Q+ L+ +
Sbjct: 51 GFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFL-RRIGVVFGQKTQLWWD 109
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
+ ++ I+ + RL L LDL
Sbjct: 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDL 143
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number
of bacterial species have operons, typically about 14
genes in size, with genes for ATP-dependent transport
of phosphonates, degradation, and regulation of the
expression of the system. Members of this protein
family are the ATP-binding cassette component of
tripartite ABC transporters of phosphonates [Transport
and binding proteins, Anions].
Length = 243
Score = 34.2 bits (79), Expect = 0.010
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG---GKPGTKGSGVPGKRVGYMPQEIAL 77
++G SG GK+TLL CI ++G I + G K K +R+G + Q L
Sbjct: 32 AIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNL 90
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only
if the ThiB and ThiP subunits are also found [Transport
and binding proteins, Other].
Length = 213
Score = 34.1 bits (78), Expect = 0.011
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALYGEF 81
++G SG GK+TLL+ I G +G I V + T + P +R V + QE L+
Sbjct: 29 IMGPSGAGKSTLLNLIAGFIEPASGSIKV-NDQSHTGLA--PYQRPVSMLFQENNLFAHL 85
Query: 82 SIKETM 87
++++ +
Sbjct: 86 TVRQNI 91
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as
a three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603
and marine actinobacterium PHSC20C1 this cassette is in
an apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 34.0 bits (78), Expect = 0.012
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG 54
GLLG +G GK+TLL + G R + G + + G
Sbjct: 31 GLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGV 63
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins
[General function prediction only].
Length = 219
Score = 33.8 bits (77), Expect = 0.012
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 15 KKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQE 74
K+ K +LG G GKTTLL+ +VG G P T G+ P K + +
Sbjct: 2 FMKEFKIVVLGDGGVGKTTLLNRLVGD--------EFPEGYPPTIGNLDPAKTIEPYRRN 53
Query: 75 IAL 77
I L
Sbjct: 54 IKL 56
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 33.9 bits (78), Expect = 0.013
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTK-GSGVPGKRVGYMP 72
+ +K ++G SG GK+TL+ ++ +GEI ++ G KR+G +
Sbjct: 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI-LIDGIDIRDISLDSLRKRIGIVS 409
Query: 73 QEIALYGEFSIKETMMYF 90
Q+ L+ +I+E +
Sbjct: 410 QDPLLFSG-TIRENIALG 426
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 33.8 bits (78), Expect = 0.013
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTK 59
K L+G +GCGKTTLL ++G+ + ++G I GTK
Sbjct: 347 KIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-----GTK 381
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 33.8 bits (78), Expect = 0.013
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEI 49
LLG SG GK+TL++ ++ TGEI
Sbjct: 169 LLGQSGVGKSTLINALLPELNQKTGEI 195
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 33.8 bits (77), Expect = 0.013
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLN--TGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALYG 79
L+G SGCGKTTLL I G + TG I + + T P KR + + Q AL+
Sbjct: 36 LIGKSGCGKTTLLRAIAGFVKAAGLTGRIAI-ADRDLTHAP--PHKRGLALLFQNYALFP 92
Query: 80 EFSIKETMMY 89
+++ + +
Sbjct: 93 HLKVEDNVAF 102
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 33.6 bits (77), Expect = 0.014
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 7 TKKKKKKKK------KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG 60
T + +KK + + + G G G G+T L++C+ G + GEI L GK +
Sbjct: 272 TSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR-LNGKDISPR 330
Query: 61 SGVPG--KRVGYMPQ---EIALYGEFSIKETM 87
S + K + Y+ + + + FSI + M
Sbjct: 331 SPLDAVKKGMAYITESRRDNGFFPNFSIAQNM 362
Score = 26.7 bits (59), Expect = 3.9
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLG---GKPGTKGSGVPGKRVGYMPQEIALYG 79
LLG +G GK+TL+ + G G I + K K + G +G + QE+++
Sbjct: 36 LLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG--IGIIYQELSVID 93
Query: 80 EFSIKETM 87
E ++ E +
Sbjct: 94 ELTVLENL 101
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 33.5 bits (77), Expect = 0.016
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 25 GASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIK 84
G SGCGK+TLL + +G + G T + ++V Y Q L+G+ ++
Sbjct: 40 GPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVY 98
Query: 85 ETMMYFGWIFGMETPEIDDRLQFLLNFLDLPSQSRLVKNL 124
+ ++ F W + P+ L L F LP + L KN+
Sbjct: 99 DNLI-FPWQIRNQQPDPAIFLDDLERF-ALP-DTILTKNI 135
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 253
Score = 33.3 bits (76), Expect = 0.016
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 11/41 (26%)
Query: 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLN--------TGEI 49
K + L+G SGCGK+TLL C R+N TG+I
Sbjct: 31 KNRVTALIGPSGCGKSTLLRCF---NRMNDLIPGCRITGDI 68
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 33.4 bits (77), Expect = 0.016
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQE-IALYGE 80
G++G +G GK+TLL I G + +G++ V G +V + + E
Sbjct: 57 GIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-------------KVAPLIELGAGFDPE 103
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
+ +E + G I G+ EID+++ ++ F +L
Sbjct: 104 LTGRENIYLRGLILGLTRKEIDEKVDEIIEFAEL 137
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 33.0 bits (76), Expect = 0.019
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 5 TNTKKKKKKKK---------KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55
N KK K +K K Y ++G SG GK+TLL+ I + ++G++++ G +
Sbjct: 2 KNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQE 61
Query: 56 PGTKGSGVPGK----RVGYMPQEIALYGEFSIKE 85
S K ++GY+ Q AL +++E
Sbjct: 62 TPPLNSKKASKFRREKLGYLFQNFALIENETVEE 95
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 32.7 bits (74), Expect = 0.019
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 17 KKKKYGLLGASGCGKTTLLSCI 38
+ ++G G GKTTL +
Sbjct: 1 PGEVILIVGPPGSGKTTLARAL 22
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 33.1 bits (76), Expect = 0.020
Identities = 26/93 (27%), Positives = 43/93 (46%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
G LGA+G GK+T L + G +G++ V G P + M Q++ L+ +
Sbjct: 54 GFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL 113
Query: 82 SIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
+++ I+ + E +RL FL LDL
Sbjct: 114 PALDSLEVLKLIYEIPDDEFAERLDFLTEILDL 146
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of
nitrate transport in bacteria and archaea. This protein
belongs to the ATP-binding cassette (ABC) superfamily.
It is thought that the two subunits encoded by ntrC and
ntrD form the binding surface for interaction with ATP.
This model is restricted in identifying ATP binding
subunit associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from
the operon which among others include products of ntrA
- a regulatory protein; ntrB - a hydropbobic
transmembrane permease and narB - a reductase
[Transport and binding proteins, Anions, Transport and
binding proteins, Other].
Length = 230
Score = 32.8 bits (75), Expect = 0.023
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPG 65
L+G SGCGK+TLL+ I G + +G + +L GK T+ PG
Sbjct: 16 LIGHSGCGKSTLLNLISGLAQPTSGGV-ILEGKQITE----PG 53
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 32.9 bits (75), Expect = 0.023
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55
L+GA+G GKTTLL + G R +G I V GK
Sbjct: 36 LIGANGAGKTTLLGTLCGDPRATSGRI-VFDGK 67
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 33.2 bits (76), Expect = 0.026
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
+ L+G +G GK+TLL C+ G + ++G I G
Sbjct: 27 HALMGENGAGKSTLLKCLFGIYQKDSGSILFQG 59
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 285
Score = 32.8 bits (75), Expect = 0.027
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLN 45
++G SGCGK+T L CI R+N
Sbjct: 70 MIGPSGCGKSTFLRCI---NRMN 89
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 32.6 bits (75), Expect = 0.029
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEI 49
LLG+SG GK+TL++ ++G TG +
Sbjct: 200 LLGSSGVGKSTLVNALLGEEVQKTGAV 226
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 32.8 bits (75), Expect = 0.030
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 13/52 (25%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQE 74
+LGA+G GK+TLL ++ + ++ G +W + + Y+PQ+
Sbjct: 691 VLGATGSGKSTLLQSLLSQFEISEGRVWA-------------ERSIAYVPQQ 729
Score = 25.5 bits (56), Expect = 9.6
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 18 KKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKG 60
++K G++G +G GK+TLL + + GEI V G + G G
Sbjct: 1336 REKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG 1378
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system,
ATPase component [General function prediction only].
Length = 249
Score = 32.7 bits (75), Expect = 0.031
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55
L+G +G GKTTL+ I G+ R GE+ G
Sbjct: 36 LIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDT 68
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic
phosphate. In the model species Escherichia coli, a
constitutive transporter for inorganic phosphate, with
low affinity, is also present. The high affinity
transporter that includes this polypeptide is induced
when extracellular phosphate concentrations are low.
The proteins most similar to the members of this family
but not included appear to be amino acid transporters
[Transport and binding proteins, Anions].
Length = 247
Score = 32.7 bits (75), Expect = 0.032
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 11/46 (23%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN--------TGEIWVLG 53
K + L+G SGCGK+TLL + R+N G++ G
Sbjct: 25 PKNQVTALIGPSGCGKSTLLRSL---NRMNDLVPGVRIEGKVLFDG 67
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 32.8 bits (75), Expect = 0.033
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 19 KKYGLLGASGCGKTTLLSCIVG 40
+K GL+G +GCGK+TLL+ +
Sbjct: 28 QKVGLVGKNGCGKSTLLALLKN 49
Score = 27.8 bits (62), Expect = 1.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEI 49
GLLG +G GK+TL+ + G +GEI
Sbjct: 342 GLLGRNGAGKSTLIKLLAGELAPVSGEI 369
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 32.5 bits (74), Expect = 0.034
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
YG++GASG GK+TL+ C+ R +G + V G
Sbjct: 34 YGVIGASGAGKSTLIRCVNLLERPTSGSVIVDG 66
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 32.6 bits (75), Expect = 0.036
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP----GTKGSGVPGKRVGYMPQEIA 76
+ L+G +G GK+TLL + G + + G I + G+ T + G + Y QE+
Sbjct: 33 HALMGENGAGKSTLLKILSGNYQPDAGSIL-IDGQEMRFASTTAALAAGVAIIY--QELH 89
Query: 77 LYGEFSIKETMMY------FGWI 93
L E ++ E + G +
Sbjct: 90 LVPEMTVAENLYLGQLPHKGGIV 112
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 32.3 bits (73), Expect = 0.037
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEI-WVLGGKP 56
GL+GA+GCGK+TL + G R G + W GKP
Sbjct: 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLW--QGKP 64
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 32.5 bits (74), Expect = 0.042
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 23 LLGASGCGKTTLLSCIVGRRRL---NTGEIWVLG----GKPGTKGSGVPGKRVGYMPQEI 75
++G SG GK+T + + RL G+I++ G + + V K++G + Q+
Sbjct: 24 IMGLSGSGKSTTVRML---NRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80
Query: 76 ALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP 115
AL+ +I + + G E ++ LL + L
Sbjct: 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 32.4 bits (74), Expect = 0.045
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
G++G SGCGK+T I+G + GE+ LG
Sbjct: 51 GVVGESGCGKSTFARAIIGLVKATDGEVAWLG 82
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 31.9 bits (72), Expect = 0.050
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN--------TGEIWVLGGKP-GTKGSGVP-G 65
++K+ L+G SGCGK+T L C+ R+N TGEI G G+K V
Sbjct: 28 EEKELTALIGPSGCGKSTFLRCL---NRMNDDIENIKITGEIKFEGQNIYGSKMDLVELR 84
Query: 66 KRVGYMPQEIALYGEFSIKETMMYFGWIFGMETPE-IDDRLQ 106
K VG + Q+ + FS+ + + Y I G++ E ID R++
Sbjct: 85 KEVGMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKELIDQRVE 125
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 32.2 bits (73), Expect = 0.052
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS 61
++G +GCGK+TL G GEI +L G + S
Sbjct: 373 IVGENGCGKSTLAKLFCGLYIPQEGEI-LLDGAAVSADS 410
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 31.8 bits (72), Expect = 0.054
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
L G++G GKTTLL I G GEI
Sbjct: 32 LKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62
>gnl|CDD|200328 TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase.
Members of this protein family comprise a distinct
clade of putative ATPase associated with an integral
membrane complex likely to act in pilus formation,
secretion, or conjugal transfer. The association of most
members with a nearby gene for a DEAH-box helicase
suggests a role in conjugal transfer.
Length = 340
Score = 31.9 bits (73), Expect = 0.057
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 25 GASGCGKTTLLSCIVGR 41
G +G GKTTLLS ++
Sbjct: 185 GGTGSGKTTLLSALLAL 201
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 32.0 bits (73), Expect = 0.062
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS-GVPGKRVGYMPQE 74
K K ++G SG GK+TL +VG + +GEI +L G + + Y+PQE
Sbjct: 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI-LLNGFSLKDIDRHTLRQFINYLPQE 556
>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal.
Miro2 subfamily. Miro (mitochondrial Rho) proteins have
tandem GTP-binding domains separated by a linker region
containing putative calcium-binding EF hand motifs.
Genes encoding Miro-like proteins were found in several
eukaryotic organisms. This CD represents the putative
GTPase domain in the C terminus of Miro proteins. These
atypical Rho GTPases have roles in mitochondrial
homeostasis and apoptosis. Most Rho proteins contain a
lipid modification site at the C-terminus; however,
Miro is one of few Rho subfamilies that lack this
feature.
Length = 180
Score = 31.4 bits (72), Expect = 0.067
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 24 LGASGCGKTTLLSCIVGRR 42
LGA G GK+ LL +GR
Sbjct: 10 LGAKGSGKSALLQAFLGRS 28
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 31.8 bits (73), Expect = 0.069
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK---PGTKGSGVP--GKRVGYMPQEIAL 77
+ G SG GKT+L++ I G R G I VL G+ KG +P +R+GY+ Q+ L
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRI-VLNGRVLFDAEKGICLPPEKRRIGYVFQDARL 87
Query: 78 YGEFSIKETMMY 89
+ + ++ + Y
Sbjct: 88 FPHYKVRGNLRY 99
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 31.1 bits (71), Expect = 0.078
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 19 KKYGLLGASGCGKTTLLSCIVG 40
KK L+G SGCGKTTL + G
Sbjct: 2 KKIMLIGRSGCGKTTLTQALNG 23
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 31.3 bits (72), Expect = 0.079
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEI 49
L G SG GK+TLL+ + L TGEI
Sbjct: 169 LAGQSGVGKSTLLNALAPDLELKTGEI 195
>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
the Benson-Calvin cycle in chloroplasts or
photosynthetic prokaryotes. This enzyme catalyzes the
phosphorylation of D-ribulose 5-phosphate to form
D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis.
Length = 273
Score = 31.5 bits (72), Expect = 0.079
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 6/24 (25%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLN 45
G+ G SGCGK+T L RRL
Sbjct: 3 GVAGDSGCGKSTFL------RRLT 20
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 31.2 bits (71), Expect = 0.088
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 11/55 (20%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIAL 77
LLG +G GK+TL+ ++G + G I R+GY+PQ++ L
Sbjct: 35 LLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKLRIGYVPQKLYL 78
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 31.4 bits (72), Expect = 0.089
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
++G +G GKTT++ I G+ R + G + G
Sbjct: 33 IIGPNGAGKTTMMDVITGKTRPDEGSVLFGG 63
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 31.4 bits (71), Expect = 0.089
Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 3/36 (8%)
Query: 19 KKYGLLGASGCGKTTLLSCIVGRRRLNT-GEIWVLG 53
++ GLLG +G GK+TLLS ++ R L+T GEI + G
Sbjct: 1246 QRVGLLGRTGSGKSTLLSALL--RLLSTEGEIQIDG 1279
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 31.1 bits (71), Expect = 0.094
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56
L+G +G GK+TLL+ + G +G I G+P
Sbjct: 27 LVGPNGAGKSTLLARMAGLLP-GSGSI-QFAGQP 58
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 31.5 bits (72), Expect = 0.098
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQE 74
+ G SG GKT+LL + G +W G G + ++PQ
Sbjct: 424 ITGESGAGKTSLLRALAG--------LWPWGS--GRISMP-ADSALLFLPQR 464
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 31.2 bits (71), Expect = 0.099
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLN---TGEIWVLGG 54
++G SG GK+TL+ + RL GEI V G
Sbjct: 59 IMGLSGSGKSTLVRLL---NRLIEPTRGEILVDGK 90
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 31.1 bits (71), Expect = 0.10
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP----GTKGSGVPGKRVGYMPQEIAL 77
L+G +G GK+T++ + G + G I L GK G K S G +G + QE+ L
Sbjct: 34 ALVGENGAGKSTMMKVLTGIYTRDAGSILYL-GKEVTFNGPKSSQEAG--IGIIHQELNL 90
Query: 78 YGEFSIKE 85
+ +I E
Sbjct: 91 IPQLTIAE 98
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 30.9 bits (70), Expect = 0.10
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
K+ + L+G SG GK+TLL+ + G ++GE+ ++G
Sbjct: 34 KRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVG 71
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity.
The Ras superfamily is divided into at least four
families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf
families. This superfamily also includes proteins like
the GTP translation factors, Era-like GTPases, and
G-alpha chain of the heterotrimeric G proteins. Members
of the Ras superfamily regulate a wide variety of
cellular functions: the Ras family regulates gene
expression, the Rho family regulates cytoskeletal
reorganization and gene expression, the Rab and
Sar1/Arf families regulate vesicle trafficking, and the
Ran family regulates nucleocytoplasmic transport and
microtubule organization. The GTP translation factor
family regulates initiation, elongation, termination,
and release in translation, and the Era-like GTPase
family regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 30.9 bits (70), Expect = 0.11
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEI 49
++G G GK++LL+ ++G ++
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDV 28
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 30.8 bits (70), Expect = 0.11
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPG----KRVGYMPQEIAL 77
++G+SG GK+TLL + G +GE+ G S K++G++ Q L
Sbjct: 35 AIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94
Query: 78 YGEFSIKETMMYFGWIFGMETPEIDDRLQFLL 109
+F+ E + I E +R +L
Sbjct: 95 LPDFTALENVAMPLLIGKKSVKEAKERAYEML 126
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 31.1 bits (71), Expect = 0.11
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 24 LGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA--LYGEF 81
+G++G GK+TLL+ I G + +G+I + G K + + Q+ E
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97
Query: 82 SIKETM 87
+I+E +
Sbjct: 98 TIEENL 103
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 31.3 bits (71), Expect = 0.12
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56
L+G +G GK+TL + G + +GEI +L GKP
Sbjct: 354 LIGGNGSGKSTLAMLLTGLYQPQSGEI-LLDGKP 386
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 31.1 bits (70), Expect = 0.12
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 14/67 (20%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFS 82
++G GCGK++LLS ++ E+ + G KGS V Y+PQ+ A S
Sbjct: 669 VVGQVGCGKSSLLSALL-------AEMDKVEGHVHMKGS------VAYVPQQ-AWIQNDS 714
Query: 83 IKETMMY 89
++E +++
Sbjct: 715 LRENILF 721
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 31.0 bits (70), Expect = 0.12
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 25 GASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIK 84
G +G GKTTLL + G + +G+I + GK T+G + + Y+ L + S
Sbjct: 44 GDNGAGKTTLLRVLAGLLHVESGQIQI-DGKTATRGD--RSRFMAYLGHLPGLKADLSTL 100
Query: 85 ETMMYFGWIFG 95
E + + + G
Sbjct: 101 ENLHFLCGLHG 111
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 31.0 bits (70), Expect = 0.13
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 18/58 (31%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
LLG +G GK+TLL + G L G +G+ V G ++ L GE
Sbjct: 32 LLGRNGAGKSTLLKALAGD----------LTGGGAPRGARVTG--------DVTLNGE 71
>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit. Subunit of G
proteins that contains the guanine nucleotide binding
site.
Length = 342
Score = 31.0 bits (71), Expect = 0.13
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 9 KKKKKKKKKKKKYGLLGASGCGKTTLL 35
++++KKKK++ K LLGA GK+T+L
Sbjct: 12 EEERKKKKREVKLLLLGAGESGKSTIL 38
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 246
Score = 30.8 bits (69), Expect = 0.14
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 16 KKKKKYGLLGASGCGKTTLLSC 37
++ K L+GASGCGK+T L C
Sbjct: 26 EQNKITALIGASGCGKSTFLRC 47
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 234
Score = 30.7 bits (70), Expect = 0.14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCI 38
+ L+G SG GK+TL++ I
Sbjct: 26 PAGETVALVGPSGSGKSTLVNLI 48
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 30.4 bits (69), Expect = 0.15
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
++G SG GK+TLL CI + +G++ V G
Sbjct: 32 IIGPSGSGKSTLLRCINKLEEITSGDLIVDG 62
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 30.5 bits (69), Expect = 0.15
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLN 45
+G SGCGK+T L C+ R+N
Sbjct: 50 FIGPSGCGKSTFLRCL---NRMN 69
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 30.7 bits (70), Expect = 0.15
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGK----RVGYM 71
K + ++G +G GKTTL++ ++ G+I + G + K +G +
Sbjct: 27 KPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI----DGIDIRDISRKSLRSMIGVV 82
Query: 72 PQEIALYGEFSIKETMMYFG 91
Q+ L+ +I E +
Sbjct: 83 LQDTFLFSG-TIMENIRLGR 101
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 30.2 bits (69), Expect = 0.16
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 23 LLGASGCGKTTLL 35
+ G GKTTLL
Sbjct: 4 ITGGPSTGKTTLL 16
>gnl|CDD|220642 pfam10236, DAP3, Mitochondrial ribosomal death-associated protein
3. This is a family of conserved proteins which were
originally described as death-associated-protein-3
(DAP-3). The proteins carry a P-loop DNA-binding motif,
and induce apoptosis. DAP3 has been shown to be a
pro-apoptotic factor in the mitochondrial matrix and to
be crucial for mitochondrial biogenesis and so has also
been designated as MRP-S29 (mitochondrial ribosomal
protein subunit 29).
Length = 274
Score = 30.7 bits (70), Expect = 0.16
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 10 KKKKKKKKKKKYGLLGASGCGKTTLLS 36
K+ KK ++ L G G GK+ LL+
Sbjct: 15 KEADASKKVVRFVLTGERGSGKSVLLA 41
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 305
Score = 30.6 bits (69), Expect = 0.16
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLN 45
L+G SGCGK+T L C+ R+N
Sbjct: 76 LIGPSGCGKSTFLRCL---NRMN 95
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption.
This family shows strong sequence similiarity to a
number of amino acid ABC transporter ATP-binding
proteins.
Length = 252
Score = 30.6 bits (69), Expect = 0.16
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK----PGTKGSGVPG--KRVGY 70
+K L+G SG GK+T+L ++ ++ G+I V G + PG G VP K +
Sbjct: 25 AGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQ 84
Query: 71 MPQEIAL 77
M +I +
Sbjct: 85 MRNKIGM 91
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of
RNase L inhibitor. The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis,
formation of translation preinitiation complexes, and
assembly of HIV capsids. RLI's are not transport
proteins, and thus cluster with a group of soluble
proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains, which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 177
Score = 30.2 bits (68), Expect = 0.17
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 14/65 (21%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI-WVLGGKPGTKGSGVPGKRVGYMPQE 74
K+ + G++G +G GKTT + + G+ N W G Y PQ
Sbjct: 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW-------------DGITPVYKPQY 69
Query: 75 IALYG 79
I L G
Sbjct: 70 IDLSG 74
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 30.8 bits (70), Expect = 0.17
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 21 YGLLGASGCGKTTLL 35
Y ++G G GKTTLL
Sbjct: 114 YLVIGPPGSGKTTLL 128
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 30.5 bits (69), Expect = 0.18
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLN 45
K + +G SGCGK+T+L C RLN
Sbjct: 35 KNQITAFIGPSGCGKSTILRCF---NRLN 60
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 30.5 bits (69), Expect = 0.18
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLN 45
L+G SGCGK+T L C+ R+N
Sbjct: 37 LIGPSGCGKSTFLRCL---NRMN 56
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 251
Score = 30.6 bits (69), Expect = 0.18
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 17 KKKKYGLLGASGCGKTTLLSC 37
K++ +G SGCGK+T L C
Sbjct: 30 KREVTAFIGPSGCGKSTFLRC 50
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 249
Score = 30.2 bits (68), Expect = 0.20
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLN 45
L+G SGCGK+TLL C+ R+N
Sbjct: 34 LIGPSGCGKSTLLRCL---NRMN 53
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 265
Score = 30.4 bits (68), Expect = 0.20
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 17 KKKKYGLLGASGCGKTTLLSC 37
+K+ L+G SGCGK+T L C
Sbjct: 41 EKQVTALIGPSGCGKSTFLRC 61
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 30.4 bits (69), Expect = 0.20
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 22 GLLGASGCGKTTLLSCIV 39
G+ +G GK+TLL I
Sbjct: 149 GIFAGAGVGKSTLLGMIA 166
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 30.0 bits (68), Expect = 0.22
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPG--KRVGYMPQE 74
+ + ++G +G GKTTLLS + G ++G++ +LG + G KG + KR+G + E
Sbjct: 56 PGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFG-KGETIFELRKRIGLVSSE 114
Query: 75 IAL 77
+
Sbjct: 115 LHE 117
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The
full-length GTPase protein is required for the complete
activity of the protein of interacting with the 50S
ribosome and binding of both adenine and guanine
nucleotides, with a preference for guanine nucleotide.
Length = 117
Score = 29.6 bits (67), Expect = 0.23
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT 58
L+G GK+TL++ + G + + PGT
Sbjct: 3 ALVGRPNVGKSTLINALTGAKVAIVSD------YPGT 33
>gnl|CDD|225363 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 500
Score = 30.4 bits (69), Expect = 0.23
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 6 NTKKKKKKKKKKKKKYGLL---GASGCGKTTLLSCIVGRRRLNTGEI 49
+ + + + + GL+ G +G GKTT L + LNT E
Sbjct: 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAAL--SELNTPER 287
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily.
Length = 154
Score = 29.9 bits (67), Expect = 0.25
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 23 LLGASGCGKTTLLSCI 38
L G SG GKT+LL +
Sbjct: 29 LTGPSGTGKTSLLREL 44
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 30.1 bits (68), Expect = 0.25
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
G++G SG GK+TL I G + V G ++VG + QE L+
Sbjct: 32 GIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNR- 90
Query: 82 SIKE 85
SI++
Sbjct: 91 SIRD 94
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 251
Score = 29.9 bits (67), Expect = 0.26
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLN 45
+ K L+G SGCGK+T L C+ R+N
Sbjct: 29 ENKITALIGPSGCGKSTFLRCL---NRMN 54
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 29.8 bits (67), Expect = 0.27
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 25 GASGCGKTTLLSCIVGRRRLNTGEIW 50
GA+GCGK++LL I G + ++G I+
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIY 58
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 30.1 bits (68), Expect = 0.29
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 10 KKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRR 43
KKKKKKKKK S K T+ + RR+
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRK 42
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 29.8 bits (68), Expect = 0.29
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFS 82
L G +G GKTTLL I G G I L G + Y+ A+ +
Sbjct: 33 LTGPNGSGKTTLLRLIAGLLPPAAGTI-KLDGGDIDDPD--VAEACHYLGHRNAMKPALT 89
Query: 83 IKETMMYFGWIFGMETPEIDDRLQF--LLNFLDLP 115
+ E + ++ G E +I L+ L LP
Sbjct: 90 VAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLP 124
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 29.9 bits (68), Expect = 0.30
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 9/36 (25%)
Query: 22 GLLGASGCGKTTLLSCIVGRR--RLN--TGEIWVLG 53
GL+G SG GK+TL G RL GEI G
Sbjct: 317 GLVGESGSGKSTL-----GLALLRLIPSQGEIRFDG 347
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 29.6 bits (67), Expect = 0.35
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 17 KKKKYGLLGASGCGKTTLL 35
K + +G SGCGK+TLL
Sbjct: 38 KNQVTAFIGPSGCGKSTLL 56
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 29.7 bits (67), Expect = 0.36
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75
G+LG +G GKTT + + G + + G+I + V Y PQ I
Sbjct: 29 GILGPNGIGKTTFIKMLAGVLKPDEGDI------------EIELDTVSYKPQYI 70
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 29.8 bits (67), Expect = 0.36
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 23 LLGASGCGKTTLLSCIVGRR 42
L+G SG GKTTL+ + GR+
Sbjct: 911 LMGVSGAGKTTLMDVLAGRK 930
Score = 29.4 bits (66), Expect = 0.55
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLN---TGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYG 79
LLG GKTTLL + G+ + +GEI G + VP K Y+ Q G
Sbjct: 196 LLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYR---LNEFVPRKTSAYISQNDVHVG 252
Query: 80 EFSIKETM 87
++KET+
Sbjct: 253 VMTVKETL 260
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly
regulated anion channel at the apical surface of many
epithelia. Use of the term assembly of a functional ion
channel implies the coming together of subunits or at
least smaller not-yet functional components of the
active whole. In fact, on the basis of current
knowledge only the CFTR polypeptide itself is required
to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2.
Length = 275
Score = 29.4 bits (66), Expect = 0.38
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 19 KKYGLLGASGCGKTTLLSCIVGRRRLNT-GEIWVLG 53
++ GLLG +G GK+TLLS + R LNT G+I + G
Sbjct: 31 QRVGLLGRTGSGKSTLLSAFL--RLLNTEGDIQIDG 64
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 29.4 bits (66), Expect = 0.38
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWV 51
+K K Y ++G SG GK+TL++ G + G I V
Sbjct: 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQV 85
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding
subunit; Provisional.
Length = 257
Score = 29.6 bits (67), Expect = 0.38
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 25 GASGCGKTTLLSCIVGRRRLNTGEI 49
G SGCGK+TLL + G + GE+
Sbjct: 45 GRSGCGKSTLLRLLAGLETPSAGEL 69
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 29.7 bits (67), Expect = 0.38
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56
L+G +G GK+TL S ++G L GEI L G+P
Sbjct: 372 LVGHTGSGKSTLASLLMGYYPLTEGEIR-LDGRP 404
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 29.3 bits (66), Expect = 0.41
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN 45
++ + L+G SGCGK+T L + R+N
Sbjct: 27 EENQVTALIGPSGCGKSTFLRTL---NRMN 53
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 29.3 bits (66), Expect = 0.45
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 12/53 (22%)
Query: 23 LLGASGCGKTTLLSCIV-------GRRRLNTGEIWVLGGKPGTKGSGVPGKRV 68
L+G SG GK+ L+C G R+ G + +L GKP + G+++
Sbjct: 34 LVGGSGSGKS--LTCAAALGILPAGVRQTA-GRV-LLDGKP-VAPCALRGRKI 81
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 29.5 bits (67), Expect = 0.45
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEI 49
++G SG GK+TLL ++G +G +
Sbjct: 483 AIVGPSGSGKSTLLRLLLGFETPESGSV 510
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 29.2 bits (66), Expect = 0.46
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 25 GASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIK 84
G +G GKTTLL + G R + GE++ G+P + + Y+ + + E +
Sbjct: 35 GPNGAGKTTLLRILAGLLRPDAGEVY-WQGEPIQNVRESYHQALLYLGHQPGIKTELTAL 93
Query: 85 ETMMYFGWIFG-METPEIDDRLQF--LLNFLDLP 115
E + ++ G I + L L DLP
Sbjct: 94 ENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLP 127
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 274
Score = 29.2 bits (65), Expect = 0.47
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 18 KKKYGLLGASGCGKTTLLSC 37
KK +G SGCGK+TLL C
Sbjct: 46 KKIIAFIGPSGCGKSTLLRC 65
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 29.2 bits (65), Expect = 0.51
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCI 38
+ K Y +G SGCGK+T+L I
Sbjct: 409 TEGKTYAFVGESGCGKSTILKLI 431
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 29.0 bits (65), Expect = 0.53
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56
L+G +G GK+TLL+ + G +G I G+P
Sbjct: 30 LVGPNGAGKSTLLARMAGMTS-GSGSI-QFAGQP 61
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 29.0 bits (65), Expect = 0.57
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 23 LLGASGCGKTTLLSCI 38
L+G SG GK+TLL I
Sbjct: 36 LIGPSGSGKSTLLRSI 51
>gnl|CDD|234401 TIGR03925, T7SS_EccC_b, type VII secretion protein EccCb. This
model represents the C-terminal domain or EccCb subunit
of the type VII secretion protein EccC as found in the
Actinobacteria. Type VII secretion is defined more
broadly as including secretion systems for ESAT-6-like
proteins in the Firmicutes as well as in the
Actinobacteria, but this family does not show close
homologs in the Firmicutes [Protein fate, Protein and
peptide secretion and trafficking].
Length = 566
Score = 29.2 bits (66), Expect = 0.57
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 24 LGASGCGKTTLLSCIV 39
G S GKTTLL I
Sbjct: 369 FGDSESGKTTLLRAIA 384
>gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 29.1 bits (66), Expect = 0.65
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT--KGSGVPGKRVGYMPQEI 75
G+L GKTTL I+ TG+I K G G+ V +MPQE
Sbjct: 12 GILAHIDAGKTTLTERILFY----TGKI----HKMGEVEDGTTV----TDWMPQEQ 55
>gnl|CDD|227922 COG5635, COG5635, Predicted NTPase (NACHT family) [Signal
transduction mechanisms].
Length = 824
Score = 29.0 bits (65), Expect = 0.66
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 15 KKKKKKYGLLGASGCGKTTLLS-----CIVGRRRLNTGEIWVL 52
+K K +LGA G GKTT L I++L
Sbjct: 219 LEKYAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLL 261
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 202
Score = 28.8 bits (65), Expect = 0.66
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 23 LLGASGCGKTTLLSCIVGRR 42
+LG G G +TLL + R
Sbjct: 38 VLGRPGSGCSTLLKALANRT 57
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter
ATP-binding protein YecC; Provisional.
Length = 250
Score = 28.6 bits (64), Expect = 0.67
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 9/41 (21%)
Query: 23 LLGASGCGKTTLLSCI-------VGRRRLNTGEIWVLGGKP 56
++G SG GKTTLL CI G R+ G+I + +
Sbjct: 34 IIGPSGSGKTTLLRCINLLEQPEAGTIRV--GDITIDTARS 72
>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small
guanosine triphosphatases (GTPases). Rab GTPases form
the largest family within the Ras superfamily. There
are at least 60 Rab genes in the human genome, and a
number of Rab GTPases are conserved from yeast to
humans. Rab GTPases are small, monomeric proteins that
function as molecular switches to regulate vesicle
trafficking pathways. The different Rab GTPases are
localized to the cytosolic face of specific
intracellular membranes, where they regulate distinct
steps in membrane traffic pathways. In the GTP-bound
form, Rab GTPases recruit specific sets of effector
proteins onto membranes. Through their effectors, Rab
GTPases regulate vesicle formation, actin- and
tubulin-dependent vesicle movement, and membrane
fusion. GTPase activating proteins (GAPs) interact with
GTP-bound Rab and accelerate the hydrolysis of GTP to
GDP. Guanine nucleotide exchange factors (GEFs)
interact with GDP-bound Rabs to promote the formation
of the GTP-bound state. Rabs are further regulated by
guanine nucleotide dissociation inhibitors (GDIs),
which mask C-terminal lipid binding and promote
cytosolic localization. While most unicellular
organisms possess 5-20 Rab members, several have been
found to possess 60 or more Rabs; for many of these Rab
isoforms, homologous proteins are not found in other
organisms. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab
proteins. Since crystal structures often lack
C-terminal residues, the lipid modification site is not
available for annotation in many of the CDs in the
hierarchy, but is included where possible.
Length = 159
Score = 28.6 bits (65), Expect = 0.71
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 20 KYGLLGASGCGKTTLLS 36
K L+G SG GKT+LL
Sbjct: 2 KIVLIGDSGVGKTSLLL 18
>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain. Proteins
with a small GTP-binding domain recognized by this
model include Ras, RhoA, Rab11, translation elongation
factor G, translation initiation factor IF-2,
tetratcycline resistance protein TetM, CDC42, Era,
ADP-ribosylation factors, tdhF, and many others. In
some proteins the domain occurs more than once.This
model recognizes a large number of small GTP-binding
proteins and related domains in larger proteins. Note
that the alpha chains of heterotrimeric G proteins are
larger proteins in which the NKXD motif is separated
from the GxxxxGK[ST] motif (P-loop) by a long insert
and are not easily detected by this model [Unknown
function, General].
Length = 162
Score = 28.5 bits (64), Expect = 0.72
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 19 KKYGLLGASGCGKTTLLSCIVGRRRLNT 46
K ++G GK+TLL+ ++G + T
Sbjct: 2 IKIVIVGDPNVGKSTLLNRLLGNKISIT 29
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide
dismutase. NikD and NikE are homologous [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 230
Score = 28.5 bits (64), Expect = 0.72
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNT----GEIWVLGGKPGTKGSGVPGKRVGYMPQE--I 75
L+G SG GK+ I+G GEI +L G+P + G+ + + Q
Sbjct: 16 ALVGESGSGKSLTCLAILGLLPPGLTQTSGEI-LLDGRP-LLPLSIRGRHIATIMQNPRT 73
Query: 76 ALYGEFSIKETMM 88
A F++ +
Sbjct: 74 AFNPLFTMGNHAI 86
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 28.7 bits (65), Expect = 0.76
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 22 GLLGASGCGKTTLLSCIV 39
G+ SG GK+TLL I
Sbjct: 167 GIFAGSGVGKSTLLGMIA 184
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a
wide variety of presumed DNA repair proteins.
Length = 154
Score = 28.4 bits (64), Expect = 0.79
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 9/48 (18%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGY 70
L GA G GK+TL + V G+P V RV Y
Sbjct: 38 LAGAPGTGKSTLALDLAAA---------VATGRPFLGPFPVEPGRVLY 76
>gnl|CDD|226054 COG3523, IcmF, Type VI protein secretion system component VasK
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 1188
Score = 28.9 bits (65), Expect = 0.80
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 16/63 (25%)
Query: 8 KKKKKKKKKKKKKYGL-----LGASGCGKTTLLSCIVGRRRLNTGEIWVL---GGKPGTK 59
K++K+ + ++ Y L +G G GKTT L LN+G + L G G
Sbjct: 110 KRRKRGRPGRRYLYELPWYMVIGPPGSGKTTAL--------LNSGLQFPLAEQMGALGLA 161
Query: 60 GSG 62
G G
Sbjct: 162 GPG 164
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 28.4 bits (64), Expect = 0.80
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 23 LLGASGCGKTTLLSCI 38
++G SG GK+TLL CI
Sbjct: 55 IMGLSGSGKSTLLRCI 70
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c
biogenesis. Cytochrome c maturation in E. coli requires
the ccm operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and
CcmH. The CcmAB proteins represent an ABC transporter
and the CcmCD proteins participate in heme transfer to
CcmE.
Length = 201
Score = 28.2 bits (63), Expect = 0.83
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFS 82
+ G +G GKTTLL + G G + +L G P + + Y+ + S
Sbjct: 31 VTGPNGSGKTTLLRILAGLSPPLAGRV-LLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89
Query: 83 IKETMMYF 90
+ E + ++
Sbjct: 90 VLENLRFW 97
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 28.2 bits (64), Expect = 0.83
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 25 GASGCGKTTLLSCIVGRRRLNTGEI-WVLGGKP 56
G +G GKT+LL + G R + GE+ W G+P
Sbjct: 34 GPNGAGKTSLLRILAGLARPDAGEVLW--QGEP 64
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 28.4 bits (64), Expect = 0.87
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 16/43 (37%)
Query: 23 LLGASGCGKTTLLSCIV--------------GRRRLNTGE-IW 50
++G +G GK+TLLS I GRRR +GE IW
Sbjct: 291 IVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRR-GSGETIW 332
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form
(CCALD), the milder adult form, adrenomyeloneuropathy
(AMN), and variants without neurologic involvement
(i.e. asymptomatic).
Length = 166
Score = 28.3 bits (64), Expect = 0.88
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 19/55 (34%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLG----GKPGTKGSGVPGKRVGYMPQ 73
+ G SG GK++L + +W G G P G+ + ++PQ
Sbjct: 32 ITGPSGTGKSSLFRAL--------AGLWPWGSGRIGMP-------EGEDLLFLPQ 71
>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related
GTPases. These proteins are found in bacteria,
eukaryotes, and archaea. They all exhibit a circular
permutation of the GTPase signature motifs so that the
order of the conserved G box motifs is G4-G5-G1-G2-G3,
with G4 and G5 being permuted from the C-terminal region
of proteins in the Ras superfamily to the N-terminus of
YlqF-related GTPases.
Length = 146
Score = 28.1 bits (63), Expect = 0.91
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 7 TKKKKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI 49
TK+K K K KK + G++G GK++ ++ ++ + +L G I
Sbjct: 80 TKQKLKLKYKKGIRVGVVGLPNVGKSSFINALLNKFKLKVGSI 122
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 27.9 bits (63), Expect = 0.99
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 23 LLGASGCGKTTLLSCI 38
L G SG GK+TLL +
Sbjct: 4 LSGPSGVGKSTLLKRL 19
>gnl|CDD|218719 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely
related to pfam00931.
Length = 165
Score = 28.0 bits (63), Expect = 1.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 23 LLGASGCGKTTLL 35
L G +G GKTTLL
Sbjct: 5 LQGEAGSGKTTLL 17
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase
fold. The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons,
ATPase subunits of proteases, helicases, or
nucleic-acid stimulated ATPases. The AAA+ proteins
contain several distinct features in addition to the
conserved alpha-beta-alpha core domain structure and
the Walker A and B motifs of the P-loop NTPases.
Length = 151
Score = 27.9 bits (62), Expect = 1.0
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 23 LLGASGCGKTTLLSCI 38
L G G GKTTL I
Sbjct: 24 LYGPPGTGKTTLARAI 39
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 28.3 bits (63), Expect = 1.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 19 KKYGLLGASGCGKTTLL 35
+ YGL+G +G GKTT L
Sbjct: 204 RHYGLVGRNGTGKTTFL 220
>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit. G proteins couple
receptors of extracellular signals to intracellular
signaling pathways. The G protein alpha subunit binds
guanyl nucleotide and is a weak GTPase. A set of
residues that are unique to G-alpha as compared to its
ancestor the Arf-like family form a ring of residues
centered on the nucleotide binding site. A Ggamma is
found fused to an inactive Galpha in the Dictyostelium
protein gbqA.
Length = 329
Score = 28.4 bits (64), Expect = 1.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 23 LLGASGCGKTTLL 35
LLGA GK+T+L
Sbjct: 7 LLGAGESGKSTIL 19
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 28.1 bits (63), Expect = 1.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 22 GLLGASGCGKTTLL 35
G+ G SGCGKTT L
Sbjct: 12 GVAGDSGCGKTTFL 25
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 28.3 bits (64), Expect = 1.1
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 23 LLGASGCGKTTLLSCIVG 40
L+G SG GKT+LL+ ++G
Sbjct: 381 LVGPSGAGKTSLLNALLG 398
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 28.4 bits (64), Expect = 1.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEI 49
L+G SG GK+T+ + G + +GEI
Sbjct: 510 LVGGSGSGKSTIAKLVAGLYQPWSGEI 536
>gnl|CDD|226661 COG4198, COG4198, Uncharacterized conserved protein [Function
unknown].
Length = 405
Score = 28.3 bits (63), Expect = 1.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 93 IFGMETPEIDDRLQFLLNFLDLPSQSRLVKN 123
IFG+ P D+R+ F+ L RLV +
Sbjct: 327 IFGISDPREDNRIDFVGGIHGLEELERLVNS 357
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 250
Score = 28.0 bits (62), Expect = 1.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 17 KKKKYGLLGASGCGKTTLLSCI 38
K + ++G SGCGKTTLL I
Sbjct: 28 KNQITAIIGPSGCGKTTLLRSI 49
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 28.0 bits (63), Expect = 1.3
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 2 KTNTNTKKKKKKKKKKKKKYG 22
K K K KK+ + K G
Sbjct: 403 KEKEKEKPKVKKRHRDTKNIG 423
Score = 27.2 bits (61), Expect = 2.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 8 KKKKKKKKKKKKK 20
KK+K+K+K K KK
Sbjct: 402 KKEKEKEKPKVKK 414
Score = 26.8 bits (60), Expect = 3.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 2 KTNTNTKKKKKKKKKKKKK 20
K +KK+K+K+K K
Sbjct: 394 KVLAKRAEKKEKEKEKPKV 412
Score = 26.8 bits (60), Expect = 3.6
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 8 KKKKKKKKKKKKK 20
+KK+K+K+K K K
Sbjct: 401 EKKEKEKEKPKVK 413
Score = 26.1 bits (58), Expect = 6.0
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 2 KTNTNTKKKKKKKKKKKKK 20
K + +KK+K+K+K K
Sbjct: 393 KKVLAKRAEKKEKEKEKPK 411
Score = 25.7 bits (57), Expect = 9.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 2 KTNTNTKKKKKKKKKKKKK 20
K +K+K+K K KK+
Sbjct: 398 KRAEKKEKEKEKPKVKKRH 416
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette
domain of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 211
Score = 27.8 bits (62), Expect = 1.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 23 LLGASGCGKTTLLSCIVG 40
++G SG GK+TLL+ I G
Sbjct: 29 IVGPSGSGKSTLLNLIAG 46
>gnl|CDD|222466 pfam13945, NST1, Splicing factor, salt tolerance regulator. NST1
is a family of proteins that seem to be involved,
directly or indirectly, in the salt sensitivity of some
cellular functions in yeast. These proteins also
interact with the splicing factor Msl1p.
Length = 189
Score = 28.0 bits (62), Expect = 1.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 5 TNTKKKKKKKKKKKKKYGLLGASG 28
+++K KKKKKK+ K AS
Sbjct: 29 SSSKSKKKKKKRSKATSPSHNASD 52
Score = 26.8 bits (59), Expect = 3.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 4 NTNTKKKKKKKKKKKKK 20
++++ K KKKKKK+ K
Sbjct: 27 DSSSSKSKKKKKKRSKA 43
Score = 26.0 bits (57), Expect = 4.8
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 4 NTNTKKKKKKKKKKKKKYGL 23
+++ KKKKKK+ K
Sbjct: 29 SSSKSKKKKKKRSKATSPSH 48
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 27.9 bits (62), Expect = 1.3
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56
KK + +LG +G GK+TL + G + ++G I + GKP
Sbjct: 30 KKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFDGKP 69
>gnl|CDD|216506 pfam01443, Viral_helicase1, Viral (Superfamily 1) RNA helicase.
Helicase activity for this family has been demonstrated
and NTPase activity. This helicase has multiple roles
at different stages of viral RNA replication, as
dissected by mutational analysis.
Length = 226
Score = 27.7 bits (62), Expect = 1.3
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 5/24 (20%)
Query: 25 GASGCGKTTLLSCIVGRRRLNTGE 48
G GCGK+TL+ R+ L T
Sbjct: 5 GVPGCGKSTLI-----RKLLRTDL 23
>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5
and Rab22; regulates early endosome fusion. The
Rab5-related subfamily includes Rab5 and Rab22 of
mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of
plants. The members of this subfamily are involved in
endocytosis and endocytic-sorting pathways. In mammals,
Rab5 GTPases localize to early endosomes and regulate
fusion of clathrin-coated vesicles to early endosomes
and fusion between early endosomes. In yeast, Ypt51p
family members similarly regulate membrane trafficking
through prevacuolar compartments. GTPase activating
proteins (GAPs) interact with GTP-bound Rab and
accelerate the hydrolysis of GTP to GDP. Guanine
nucleotide exchange factors (GEFs) interact with
GDP-bound Rabs to promote the formation of the
GTP-bound state. Rabs are further regulated by guanine
nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization. Most Rab
GTPases contain a lipid modification site at the
C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
binding is essential for membrane attachment, a key
feature of most Rab proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 163
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/19 (52%), Positives = 10/19 (52%), Gaps = 4/19 (21%)
Query: 23 LLGASGCGKTTLLSCIVGR 41
LLG S GK S IV R
Sbjct: 6 LLGDSSVGK----SSIVLR 20
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 28.2 bits (62), Expect = 1.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 5 TNTKKKKKKKKKKKKKYGLLGAS 27
T+ KKKKKKKKK S
Sbjct: 101 TDDDTPSKKKKKKKKKGWFWAKS 123
Score = 27.9 bits (61), Expect = 1.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 3 TNTNTKKKKKKKKKKK 18
T+ +T KKKKKKKKK
Sbjct: 101 TDDDTPSKKKKKKKKK 116
Score = 27.9 bits (61), Expect = 1.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 4 NTNTKKKKKKKKKKKKKYG 22
N KKKKKKKK G
Sbjct: 99 NITDDDTPSKKKKKKKKKG 117
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 27.7 bits (62), Expect = 1.5
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 10/39 (25%)
Query: 22 GLLGASGCGKTT----LLSCIVGRRRLNTGEIWVLGGKP 56
GL+G SG GK+T LL I + GEIW G+P
Sbjct: 316 GLVGESGSGKSTTGLALLRLINSQ-----GEIW-FDGQP 348
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 27.9 bits (63), Expect = 1.5
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 13/54 (24%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75
G++G +G GKTT +L G + KP +G P ++ Y PQ I
Sbjct: 369 GIVGPNGIGKTTFA-------KLLAGVL-----KP-DEGEVDPELKISYKPQYI 409
>gnl|CDD|185756 cd09217, TLP-P, thaumatin and allergenic/antifungal
thaumatin-like proteins: plant homologs. This
subfamily is represented by the sweet-tasting protein
thaumatin from the African berry Thaumatococcus
daniellii, allergenic/antifungal Thaumatin-like
proteins (TLPs), and related plant proteins. TLPs are
involved in host defense and a wide range of
developmental processes in fungi, plants, and animals.
Plant TLPs are classified as pathogenesis-related (PR)
protein family 5 (PR5), their expression is induced by
environmental stresses such as pathogen/pest attack,
drought and cold. TLPs in this subfamily include such
proteins as zeamatin, found in high concentrations in
cereal seeds, and osmotin, a salt-induced protein in
osmotically stressed plants. Several members of the
plant TLP family have been reported as food allergens
from fruits (i.e., cherry, Pru av 2; bell pepper, Cap
a1; tomatoes, Lyc e NP24) and pollen allergens from
conifers (i.e., mountain cedar, Jun a 3; Arizona
cypress, Cup a3; Japanese cedar, Cry j3). Thaumatin and
TLPs are three-domain, crescent-fold structures with
either an electronegative, electropositive, or neutral
cleft occurring between domains I and II. It has been
proposed that the antifungal activity of plant PR5
proteins relies on the strong electronegative character
of this cleft. IgE-binding epitopes of mountain Cedar
(Juniperus ashei) allergen Jun a 3, which interact with
pooled IgE from patients suffering allergenic response
to this allergen, were mainly located on the helical
domain II; the best-conserved IgE-binding epitope
predicted for TLPs corresponds to this region. Some
TLPs hydrolyze the beta-1,3-glucans of the type
commonly found in fungal walls. Most TLPs contain 16
conserved Cys residues. A deletion within the third
domain (domain II) of the Triticum aestivum
thaumatin-like xylanase inhibitor is observed, thus,
only 10 conserved Cys residues are present within this
smaller TLP and similar homologs.
Length = 151
Score = 27.4 bits (61), Expect = 1.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 40 GRRRLNTGEIWVLGGKPGTKGSGVPGK 66
G R+LN G+ W + GT G + G+
Sbjct: 20 GGRQLNPGQSWTIDVPAGTAGGRIWGR 46
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 27.8 bits (62), Expect = 1.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 17 KKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
+ K LLG +G GK+TLL + G G + V+G
Sbjct: 30 EGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMG 66
>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Traf2- and Nck-interacting
kinase. Serine/threonine kinases (STKs), Traf2- and
Nck-interacting kinase (TNIK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The TNIK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to mitogen-activated protein kinase (MAPK),
kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks
participate in some MAPK signaling pathways by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). TNIK is an effector of Rap2, a small GTP-binding
protein from the Ras family. TNIK specifically activates
the c-Jun N-terminal kinase (JNK) pathway and plays a
role in regulating the actin cytoskeleton.
Length = 272
Score = 27.8 bits (61), Expect = 1.6
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 42 RRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIKETM-MYFGWIFGMETPE 100
R + TG++ + K V G + QEI + ++S + Y+G P
Sbjct: 26 RHVKTGQLAAI------KVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPG 79
Query: 101 IDDRLQFLLNFLDLPSQSRLVKNLR 125
+DD+L ++ F S + L+KN +
Sbjct: 80 MDDQLWLVMEFCGAGSVTDLIKNTK 104
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD.
This model describes the DndB protein encoded by an
operon associated with a sulfur-containing modification
to DNA. The operon is sporadically distributed in
bacteria, much like some restriction enzyme operons.
DndD is described as a putative ATPase. The small
number of examples known so far include species from
among the Firmicutes, Actinomycetes, Proteobacteria,
and Cyanobacteria [DNA metabolism,
Restriction/modification].
Length = 650
Score = 27.7 bits (62), Expect = 1.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 16 KKKKKYGLLGA-SGCGKTTLLSCI----VGRRRLNTG 47
K L+G +G GKTTLL I G+R L +G
Sbjct: 25 SSPKPIILIGGLNGAGKTTLLDAIQLALYGKRALCSG 61
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 252
Score = 27.7 bits (61), Expect = 1.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 22 GLLGASGCGKTTLLSCI 38
L+G SGCGKTT L I
Sbjct: 34 ALIGPSGCGKTTFLRAI 50
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 261
Score = 27.7 bits (61), Expect = 1.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 16 KKKKKYGLLGASGCGKTTLL 35
+K + G +G SGCGK+T+L
Sbjct: 32 RKNEITGFIGPSGCGKSTVL 51
>gnl|CDD|219856 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1, and Miro-2), are atypical Rho GTPases. They
have a unique domain organisation, with tandem
GTP-binding domains and two EF hand domains
(pfam00036), that may bind calcium. They are also
larger than classical small GTPases. It has been
proposed that they are involved in mitochondrial
homeostasis and apoptosis.
Length = 116
Score = 27.0 bits (60), Expect = 1.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 20 KYGLLGASGCGKTTLLSCIVGR 41
K ++G G GK++LLS +VG
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGG 22
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 27.7 bits (62), Expect = 1.7
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 1 MKTNTNTKKKKKKKKKKKKKYGLLGASG--CGKTTLLSCIVGRRR 43
+K+ + KK+++ K K +L A+G GKT L + I G+ R
Sbjct: 220 LKSRSGISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAGKLR 264
>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This
protein is found within operons which code for
polyhedral organelles containing the enzyme
ethanolamine ammonia lyase. The function of this gene
is unknown, although the presence of an N-terminal
GxxGxGK motif implies a GTP-binding site [Energy
metabolism, Amino acids and amines].
Length = 142
Score = 27.4 bits (61), Expect = 1.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 19 KKYGLLGASGCGKTTL 34
K+ +G+ GCGKTTL
Sbjct: 1 KRIMFIGSVGCGKTTL 16
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily. Many of the proteins in this family
are conjugative transfer proteins.
Length = 316
Score = 27.8 bits (62), Expect = 1.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVL 52
++G SG GK+TLL + R G + V+
Sbjct: 6 IVGPSGSGKSTLLKLLALRLLARGGRVIVI 35
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter.
This family belongs, more broadly, to the family of
proline and glycine-betaine transporters, but members
have been identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport
and binding proteins, Amino acids, peptides and
amines].
Length = 382
Score = 27.8 bits (62), Expect = 1.8
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNT 46
L+G SG GK+TLL + G LN
Sbjct: 55 LMGLSGSGKSTLLRAVNG---LNP 75
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 27.8 bits (62), Expect = 1.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 8 KKKKKKKKKKKKK 20
KK KKKKKKKKK+
Sbjct: 276 KKPKKKKKKKKKR 288
Score = 26.6 bits (59), Expect = 3.7
Identities = 11/13 (84%), Positives = 11/13 (84%)
Query: 8 KKKKKKKKKKKKK 20
K KK KKKKKKKK
Sbjct: 274 KFKKPKKKKKKKK 286
Score = 26.6 bits (59), Expect = 4.6
Identities = 11/13 (84%), Positives = 11/13 (84%)
Query: 8 KKKKKKKKKKKKK 20
KK KKKKKKKKK
Sbjct: 275 FKKPKKKKKKKKK 287
Score = 26.3 bits (58), Expect = 4.9
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 8 KKKKKKKKKKKKK 20
K KKKKKKKKK++
Sbjct: 277 KPKKKKKKKKKRR 289
Score = 26.3 bits (58), Expect = 5.7
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 7 TKKKKKKKKKKKKK 20
K KK KKKKKKK
Sbjct: 272 MVKFKKPKKKKKKK 285
Score = 25.9 bits (57), Expect = 8.1
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 7 TKKKKKKKKKKKKK 20
KKKKKKKKK++K
Sbjct: 278 PKKKKKKKKKRRKD 291
>gnl|CDD|237728 PRK14490, PRK14490, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MobA;
Provisional.
Length = 369
Score = 27.7 bits (62), Expect = 1.8
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 25 GASGCGKTTLLSCIVGRRRL 44
G SG GKTTL++ +V RRL
Sbjct: 12 GYSGSGKTTLITALV--RRL 29
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 27.8 bits (62), Expect = 1.8
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALY 78
K G++G +G GK+++L+ + L G I + G G K +G +PQ L+
Sbjct: 1267 KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLF 1325
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 27.2 bits (60), Expect = 1.8
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 3 TNTNTKKKKKKKKKKKKK 20
T KKKKK KK KK K
Sbjct: 97 TEKPKKKKKKSKKTKKPK 114
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 261
Score = 27.7 bits (61), Expect = 1.9
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLN--TGEIWVLG 53
++G SGCGK+T L C+ R+N E+ V G
Sbjct: 37 AIIGPSGCGKSTFLKCL---NRMNELESEVRVEG 67
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 27.6 bits (62), Expect = 1.9
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 14/55 (25%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA 76
G+LG +G GKTT + + G + + G L +V Y PQ I+
Sbjct: 371 GILGPNGIGKTTFVKLLAGVIKPDEGSEEDL--------------KVSYKPQYIS 411
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 258
Score = 27.3 bits (60), Expect = 1.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 22 GLLGASGCGKTTLLSCI 38
L+G SGCGK+T + C+
Sbjct: 42 ALIGPSGCGKSTFIRCL 58
>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase. Arl2 (Arf-like 2)
GTPases are members of the Arf family that bind GDP and
GTP with very low affinity. Unlike most Arf family
proteins, Arl2 is not myristoylated at its N-terminal
helix. The protein PDE-delta, first identified in
photoreceptor rod cells, binds specifically to Arl2 and
is structurally very similar to RhoGDI. Despite the
high structural similarity between Arl2 and Rho
proteins and between PDE-delta and RhoGDI, the
interactions between the GTPases and their effectors
are very different. In its GTP bound form, Arl2
interacts with the protein Binder of Arl2 (BART), and
the complex is believed to play a role in mitochondrial
adenine nucleotide transport. In its GDP bound form,
Arl2 interacts with tubulin- folding Cofactor D; this
interaction is believed to play a role in regulation of
microtubule dynamics that impact the cytoskeleton, cell
division, and cytokinesis.
Length = 173
Score = 27.3 bits (61), Expect = 2.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 10 KKKKKKKKKKKYGLLGASGCGKTTLLSCIVG 40
+K K+K+++ + +LG GKTT+L G
Sbjct: 6 RKTKQKEREMRILMLGLDNAGKTTILKKFNG 36
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 27.3 bits (61), Expect = 2.0
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 8 KKKKKKKKKKKKKYGLLGASG 28
KKKKKKKKKK KK G+S
Sbjct: 182 KKKKKKKKKKTKKNNATGSSA 202
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 252
Score = 27.2 bits (60), Expect = 2.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 23 LLGASGCGKTTLLSCI 38
L+G SGCGK+T L +
Sbjct: 36 LIGPSGCGKSTYLRTL 51
>gnl|CDD|235153 PRK03731, aroL, shikimate kinase II; Reviewed.
Length = 171
Score = 27.2 bits (61), Expect = 2.0
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 5/19 (26%)
Query: 23 LLGASGCGKTTLLSCIVGR 41
L+GA GCGKTT VG
Sbjct: 7 LVGARGCGKTT-----VGM 20
>gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed.
Length = 668
Score = 27.4 bits (62), Expect = 2.1
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 14/55 (25%)
Query: 24 LGASGCGKTTLLSCIVGRRRLNTGE-IWVLGGKPGTKGSGVPGKRVG-YMPQEIA 76
+G SG GKTTL E I G G G +MP+E
Sbjct: 1 VGHSGAGKTTLT------------EAILFYTGAIHRIGEVEDGTTTMDFMPEERE 43
>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase. The Era (E. coli Ras-like
protein)-like YfjP subfamily includes several
uncharacterized bacterial GTPases that are similar to
Era. They generally show sequence conservation in the
region between the Walker A and B motifs (G1 and G3 box
motifs), to the exclusion of other GTPases. Era is
characterized by a distinct derivative of the KH domain
(the pseudo-KH domain) which is located C-terminal to
the GTPase domain.
Length = 140
Score = 26.9 bits (60), Expect = 2.1
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 18/60 (30%)
Query: 22 GLLGASGCGKTTLLS-------CIVGRRRLNTGEI----WVLGGK-------PGTKGSGV 63
GL+G +G GK++L + VG RR T W GG PG G
Sbjct: 1 GLMGKTGAGKSSLCNALFGTEVAAVGDRRPTTRAAQAYVWQTGGDGLVLLDLPGVGERGR 60
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 27.3 bits (61), Expect = 2.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 6/27 (22%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEI 49
LLG SG GK++LL R LN E+
Sbjct: 33 LLGPSGAGKSSLL------RVLNLLEM 53
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the
ATP synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor
Rho.
Length = 213
Score = 27.0 bits (61), Expect = 2.2
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGG 54
G+ G SG GKT LL I R + V
Sbjct: 19 GIFGGSGTGKTVLLGMIA--RNAKADVVEVYVL 49
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 27.4 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEI 49
G+ G +G GK+TLLS I ++ G+I
Sbjct: 345 GICGPTGSGKSTLLSLIQRHFDVSEGDI 372
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 27.4 bits (61), Expect = 2.2
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGE 48
G++G SG GK+TL + +RL T +
Sbjct: 487 GIVGPSGSGKSTLTKLL---QRLYTPQ 510
>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small
guanosine triphosphatases (GTPases)-like. Rho4 is a
GTPase that controls septum degradation by regulating
secretion of Eng1 or Agn1 during cytokinesis. Rho4 also
plays a role in cell morphogenesis. Rho4 regulates
septation and cell morphology by controlling the actin
cytoskeleton and cytoplasmic microtubules. The
localization of Rho4 is modulated by Rdi1, which may
function as a GDI, and by Rga9, which is believed to
function as a GAP. In S. pombe, both Rho4 deletion and
Rho4 overexpression result in a defective cell wall,
suggesting a role for Rho4 in maintaining cell wall
integrity. Most Rho proteins contain a lipid
modification site at the C-terminus, with a typical
sequence motif CaaX, where a = an aliphatic amino acid
and X = any amino acid. Lipid binding is essential for
membrane attachment, a key feature of most Rho
proteins.
Length = 197
Score = 27.3 bits (61), Expect = 2.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 17 KKKKYGLLGASGCGKTTLLS 36
K K ++G GCGKT LL
Sbjct: 2 LKVKIVVVGDGGCGKTCLLM 21
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 253
Score = 27.1 bits (60), Expect = 2.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 17 KKKKYGLLGASGCGKTTLL 35
+ + L+G SGCGK+TLL
Sbjct: 29 QNGVFALMGPSGCGKSTLL 47
>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 27.2 bits (61), Expect = 2.3
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 9 KKKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRR 43
+ +K + + G+ G G GKT L+ + +
Sbjct: 4 DRLAEKNRPMLRIGVGGPPGSGKTALIEKTLRALK 38
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 27.1 bits (60), Expect = 2.5
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 25 GASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYM-PQEIALYGEFSI 83
G SG GKTTLL I+G ++ +P + VP V + P E E
Sbjct: 416 GQSGAGKTTLLRMILGAQK----GRGEEKYRPDSGKVEVPKNTVSALIPGEY----EPEF 467
Query: 84 KE 85
E
Sbjct: 468 GE 469
>gnl|CDD|221955 pfam13173, AAA_14, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily.
Length = 127
Score = 26.8 bits (60), Expect = 2.6
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 17 KKKKYGLLGASGCGKTTLL 35
K + G GKTTLL
Sbjct: 1 NNKIIVITGPRQVGKTTLL 19
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and
metabolism].
Length = 218
Score = 26.9 bits (60), Expect = 2.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 13 KKKKKKKKYGLLGASGCGKTTL 34
KK +K G+ G SG GKTT+
Sbjct: 3 KKPEKVIIIGIAGGSGSGKTTV 24
>gnl|CDD|163640 cd07397, MPP_DevT, Myxococcus xanthus DevT and related proteins,
metallophosphatase domain. DevT is a component in the
C-signal response pathway in Myxococcus xanthus that
stimulates the developmentally regulated expression of
the FruA response regulator protein and is required for
methylation of FrzCD during fruiting body formation.
DevT mutants having an in-frame deletion in the devT
gene, display delayed aggregation and a cell autonomous
sporulation defect. DevT belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 238
Score = 26.9 bits (60), Expect = 2.7
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 17/60 (28%)
Query: 20 KYGLLGASGCGKT--------------TLLS---CIVGRRRLNTGEIWVLGGKPGTKGSG 62
K +LG LL C GR + V+GG+P + G G
Sbjct: 53 KAVILGNHDAWYDATFRKKGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGG 112
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase.
The Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show
sequence conservation in the region between the Walker
A and B motifs (G1 and G3 box motifs), to the exclusion
of other GTPases. TrmE is ubiquitous in bacteria and is
a widespread mitochondrial protein in eukaryotes, but
is absent from archaea. The yeast member of TrmE
family, MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein
involved in cell division control. Era is characterized
by a distinct derivative of the KH domain (the
pseudo-KH domain) which is located C-terminal to the
GTPase domain. EngA and its orthologs are composed of
two GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct
GTPases, gave rise to this family.
Length = 161
Score = 26.8 bits (60), Expect = 2.8
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT 58
+ G GK++LL+ ++G+ I PGT
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVGIVSPI------PGT 31
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 236
Score = 26.8 bits (60), Expect = 2.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 19 KKYGLLGASGCGKTTLL 35
KK ++G SG GK+T+L
Sbjct: 28 KKVAIVGPSGSGKSTIL 44
>gnl|CDD|215198 PLN02348, PLN02348, phosphoribulokinase.
Length = 395
Score = 27.1 bits (60), Expect = 2.8
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 10/43 (23%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVP 64
GL SGCGK+T + RRL + V GG G P
Sbjct: 53 GLAADSGCGKSTFM------RRLTS----VFGGAAKPPKGGNP 85
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 27.0 bits (59), Expect = 2.8
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEI 49
++G +G GK+ LL + L + +
Sbjct: 3 VIIGPNGSGKSNLLKALALLLLLLSLGL 30
>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 27.1 bits (60), Expect = 2.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 23 LLGASGCGKTTLLSCIVGRR 42
++G GK+TL++ I+GRR
Sbjct: 280 IVGRPNVGKSTLVNRILGRR 299
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine
transporter subunit; Provisional.
Length = 257
Score = 26.9 bits (59), Expect = 3.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
++G+SG GK+T L CI + + G I V G
Sbjct: 36 IIGSSGSGKSTFLRCINFLEKPSEGSIVVNG 66
>gnl|CDD|215692 pfam00071, Ras, Ras family. Includes sub-families Ras, Rab, Rac,
Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with
GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025,
pfam00063. As regards Rab GTPases, these are important
regulators of vesicle formation, motility and fusion.
They share a fold in common with all Ras GTPases: this
is a six-stranded beta-sheet surrounded by five
alpha-helices.
Length = 162
Score = 26.7 bits (60), Expect = 3.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 20 KYGLLGASGCGKTTLL 35
K L+G G GK++LL
Sbjct: 1 KLVLVGDGGVGKSSLL 16
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the
SUF system, shown in E. coli to consist of six proteins
and believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 26.8 bits (60), Expect = 3.1
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 23 LLGASGCGKTTLLSCIVGRR--RLNTGEIWVLG 53
++G +G GK+TL I G + +G I G
Sbjct: 31 IMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG 63
>gnl|CDD|227341 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 27.0 bits (60), Expect = 3.1
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 19 KKYGLL---GASGCGKTTLLSCIVGRRRLN-TGEI 49
K GL+ GA+G GK+T ++ ++G R N TG I
Sbjct: 125 AKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHI 159
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 26.3 bits (59), Expect = 3.2
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 25 GASGCGKTT---LLSCIVGRRRLNTGEI 49
G +G GK+T LL+ +G L+TG I
Sbjct: 6 GPAGSGKSTVAKLLAKKLGLPYLDTGGI 33
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 269
Score = 26.7 bits (59), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLN 45
+ K L+G SGCGK+T+L + R+N
Sbjct: 37 PRGKVTALIGPSGCGKSTVLRSL---NRMN 63
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 26.7 bits (59), Expect = 3.3
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 8 KKKKKKKKKKKKKYGLLG 25
KKKKK KKKK K LL
Sbjct: 92 KKKKKDKKKKSPKSLLLN 109
Score = 25.6 bits (56), Expect = 7.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 4 NTNTKKKKKKKKKKKK 19
N KKKK KKKK K
Sbjct: 89 NKQKKKKKDKKKKSPK 104
Score = 25.2 bits (55), Expect = 9.7
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 6 NTKKKKKKKKKKKKKYGLL 24
N +KKKKK KKKK LL
Sbjct: 89 NKQKKKKKDKKKKSPKSLL 107
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 25.1 bits (55), Expect = 3.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 2 KTNTNTKKKKKKKKKKKKKY 21
K T KKKK KKK+K K
Sbjct: 12 KPGTEQKKKKSAKKKRKPKL 31
>gnl|CDD|236166 PRK08149, PRK08149, ATP synthase SpaL; Validated.
Length = 428
Score = 26.5 bits (59), Expect = 3.7
Identities = 7/18 (38%), Positives = 15/18 (83%)
Query: 22 GLLGASGCGKTTLLSCIV 39
G+ ++GCGKT+L++ ++
Sbjct: 155 GIFASAGCGKTSLMNMLI 172
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 26.7 bits (59), Expect = 3.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 21 YGLLGASGCGKTTLLSCI 38
+ + G +G GKTTLL I
Sbjct: 33 FAITGPTGAGKTTLLDAI 50
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 26.5 bits (58), Expect = 3.8
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 20/92 (21%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFS 82
LLG SG GK+TLL + G L TG+ G + + + + G +
Sbjct: 35 LLGPSGSGKSTLLRHLSG---LITGD-------------KSAGSHIELLGRTVQREGRLA 78
Query: 83 --IKETMMYFGWIFGMETPEIDDRLQFLLNFL 112
I+++ G+IF + + +RL L N L
Sbjct: 79 RDIRKSRANTGYIF--QQFNLVNRLSVLENVL 108
>gnl|CDD|226446 COG3936, COG3936, Protein involved in polysaccharide intercellular
adhesin (PIA) synthesis/biofilm formation [Carbohydrate
transport and metabolism].
Length = 349
Score = 26.7 bits (59), Expect = 3.9
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 72 PQEIALYGEFSIKETMMYFGWIF 94
Q I L+ F M++ GW F
Sbjct: 172 AQHILLFLTFPYFFAMIFMGWYF 194
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length
MRP-type transporter 1). NFT1 belongs to the MRP
(multidrug resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 26.6 bits (59), Expect = 3.9
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73
K K +K G++G +G GK+TL+ + G+I + G T + +PQ
Sbjct: 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQ 89
Query: 74 EIALY 78
+ L+
Sbjct: 90 DPTLF 94
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 26.2 bits (58), Expect = 4.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 2 KTNTNTKKKKKKKKKKKKK 20
KT K++KKK+KKKKK
Sbjct: 82 KTAKKRAKRQKKKQKKKKK 100
Score = 25.4 bits (56), Expect = 8.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 8 KKKKKKKKKKKKKYGLLGASG 28
KKK+KKKKKKK K G
Sbjct: 92 KKKQKKKKKKKAKKGNKKEEK 112
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 26.6 bits (59), Expect = 4.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 17 KKKKYGLLGASGCGKTTLLSCIV 39
K +K G+ SG GK+TL+ IV
Sbjct: 156 KGQKLGIFAGSGVGKSTLMGMIV 178
>gnl|CDD|224292 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 398
Score = 26.6 bits (59), Expect = 4.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 8 KKKKKKKKKKKKKYGLLGASGCGKTTLL 35
+ KK + +LG GKTTLL
Sbjct: 27 PRLIKKLDLRPFIILILGPRQVGKTTLL 54
>gnl|CDD|227254 COG4917, EutP, Ethanolamine utilization protein [Amino acid
transport and metabolism].
Length = 148
Score = 26.0 bits (57), Expect = 4.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 19 KKYGLLGASGCGKTTL 34
K+ +G GCGKTTL
Sbjct: 2 KRIAFVGQVGCGKTTL 17
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 268
Score = 26.5 bits (58), Expect = 4.3
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLN 45
L+G SGCGK+T L I R+N
Sbjct: 52 LIGPSGCGKSTFLRSI---NRMN 71
>gnl|CDD|226426 COG3911, COG3911, Predicted ATPase [General function prediction
only].
Length = 183
Score = 26.4 bits (58), Expect = 4.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 17 KKKKYGLLGASGCGKTTLL 35
+ K++ L G G GKTTLL
Sbjct: 8 RHKRFILTGGPGAGKTTLL 26
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 26.6 bits (58), Expect = 4.5
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL-----NTGEIWVLGGKPGTK 59
K+ K +G SGCGK+T L + L + GEI+ LG +K
Sbjct: 106 KRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 26.2 bits (58), Expect = 4.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 8 KKKKKKKKKKKKKYGLLGASG 28
K KKKK K K K + GA+
Sbjct: 202 KGGKKKKGKAKAKLNVGGAND 222
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 26.6 bits (59), Expect = 4.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 2 KTNTNTKKKKKKKKKKKKKYGLLGASG 28
K ++ K + KKKKKKK + L G
Sbjct: 872 KLRSSHKDRMKKKKKKKNDFCFLTVWG 898
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and
host eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 26.1 bits (58), Expect = 4.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 25 GASGCGKTTLLSCIVG 40
G +G GKTTLL+ ++
Sbjct: 32 GGTGSGKTTLLNALLA 47
>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family. In
Arabidopsis the region carries two binding domains, a
phosphoribosylpyrophosphate-binding domain and, at the
very C-terminus, a uracil-binding domain.
Length = 197
Score = 26.2 bits (58), Expect = 4.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 22 GLLGASGCGKTTLLSCIV 39
G+ G+SG GKTT+ V
Sbjct: 3 GVTGSSGAGKTTVARTFV 20
>gnl|CDD|239390 cd03116, MobB, Molybdenum is an essential trace element in the
form of molybdenum cofactor (Moco) which is associated
with the metabolism of nitrogen, carbon and sulfur by
redox active enzymes. In E. coli, the synthesis of Moco
involves genes from several loci: moa, mob, mod, moe
and mog. The mob locus contains mobA and mobB genes.
MobB catalyzes the attachment of the guanine
dinucleotide to molybdopterin.
Length = 159
Score = 26.1 bits (58), Expect = 5.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 22 GLLGASGCGKTTLL 35
G +G SG GKTTLL
Sbjct: 5 GFVGYSGSGKTTLL 18
>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta), together with SR-alpha, forms the
heterodimeric signal recognition particle (SRP).
Signal recognition particle receptor, beta subunit
(SR-beta). SR-beta and SR-alpha form the heterodimeric
signal recognition particle (SRP or SR) receptor that
binds SRP to regulate protein translocation across the
ER membrane. Nascent polypeptide chains are synthesized
with an N-terminal hydrophobic signal sequence that
binds SRP54, a component of the SRP. SRP directs
targeting of the ribosome-nascent chain complex (RNC)
to the ER membrane via interaction with the SR, which
is localized to the ER membrane. The RNC is then
transferred to the protein-conducting channel, or
translocon, which facilitates polypeptide translation
across the ER membrane or integration into the ER
membrane. SR-beta is found only in eukaryotes; it is
believed to control the release of the signal sequence
from SRP54 upon binding of the ribosome to the
translocon. High expression of SR-beta has been
observed in human colon cancer, suggesting it may play
a role in the development of this type of cancer.
Length = 202
Score = 26.1 bits (58), Expect = 5.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 23 LLGASGCGKTTLLS 36
LLG S GKT L +
Sbjct: 5 LLGPSDSGKTALFT 18
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 26.2 bits (58), Expect = 5.3
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPG--KRVGYMPQEIALYG 79
GL+G +G GK+TL+ + G + +G+I + G K + K+VG + Q Y
Sbjct: 37 GLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQ----YP 92
Query: 80 EFSIKETMMY----FGWI-FGMETPEIDDR 104
E+ + E + FG I G+ EI++R
Sbjct: 93 EYQLFEETIEKDIAFGPINLGLSEEEIENR 122
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 26.4 bits (58), Expect = 5.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 14 KKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73
K +K + + G++G GKT+LL I+G + G+I K SG R+ + Q
Sbjct: 59 KIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI---------KHSG----RISFSSQ 105
>gnl|CDD|226415 COG3899, COG3899, Predicted ATPase [General function prediction
only].
Length = 849
Score = 26.2 bits (58), Expect = 5.4
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 23 LLGASGCGKTTLLSCIVGR 41
+ G SG GK+ L++ +
Sbjct: 29 VAGESGIGKSALVNEVHKP 47
>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion
transport and metabolism].
Length = 653
Score = 26.1 bits (58), Expect = 5.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 17 KKKKYGLLGASGCGKTTLLSCIVGRR 42
KK L+G GKTTL + + G
Sbjct: 2 KKLTVALVGNPNVGKTTLFNALTGAN 27
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 26.1 bits (57), Expect = 6.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
KK + G++G +G GK+TL + G R G++ V G
Sbjct: 26 KKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG 63
>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase.
Length = 468
Score = 26.0 bits (57), Expect = 6.0
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 3 TNTNTKKKKKKKKKKKKKYGLLGASGCGKTTL 34
+ ++ K+K K K ++G +G GK+ L
Sbjct: 7 SPGAGEEGSPKQKGKAKVVVVMGPTGSGKSKL 38
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is
a multistep ATP-dependent reaction that requires the
UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are
ATPases, with UvrA having two ATP binding sites, which
have the characteristic signature of the family of ABC
proteins, and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 25.7 bits (57), Expect = 6.2
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 22 GLLGASGCGKTTLLSCI---VGRRRLNTG 47
+ G SG GK+TL++ G+ RL +
Sbjct: 25 VVTGVSGSGKSTLVNEGLYASGKARLISF 53
>gnl|CDD|234034 TIGR02858, spore_III_AA, stage III sporulation protein AA. Members
of this protein are the stage III sporulation protein
AA, encoded by one of several genes in the spoIIIA
locus. It seems that this protein is found in a species
if and only if that species is capable of endospore
formation [Cellular processes, Sporulation and
germination].
Length = 270
Score = 25.8 bits (57), Expect = 6.3
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 14/56 (25%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ--EIA 76
++ CGKTTLL + R L+T G G+ GK+VG + + EIA
Sbjct: 116 IISPPQCGKTTLLRDLA--RILST----------GISQLGLRGKKVGIVDERSEIA 159
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 25.9 bits (57), Expect = 6.4
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG-----VPGKRVGYMPQEIAL 77
++G+SG GK+TLL + G +G++ + G+P +K S + +++G++ Q L
Sbjct: 40 IVGSSGSGKSTLLHLLGGLDTPTSGDV-IFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98
Query: 78 YGEFSIKETMMYFGWIFGMETPEIDDRLQFLL 109
+F+ E + I + EI+ R +L
Sbjct: 99 LPDFTALENVAMPLLIGKKKPAEINSRALEML 130
>gnl|CDD|226372 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 25.9 bits (57), Expect = 6.5
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 16/56 (28%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQ--EIA 76
++G GKTTLL I R L+ G + K+VG + + EIA
Sbjct: 142 IIGPPQVGKTTLLRDIA--RLLSDGI------------NQFLPKKVGIIDERSEIA 183
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 25.8 bits (57), Expect = 6.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 2 KTNTNTKKKKKKKKKKKKK 20
+ K KKKKKKKKKK
Sbjct: 175 EKMVEPKGSKKKKKKKKKK 193
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 25.8 bits (58), Expect = 6.7
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 22 GLL----GASGCGKTTLLSCIVGR 41
GLL G SG GK+TL+ ++ R
Sbjct: 5 GLLIVLSGPSGAGKSTLVKALLER 28
>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family. The YihA (EngB)
subfamily of GTPases is typified by the E. coli YihA,
an essential protein involved in cell division control.
YihA and its orthologs are small proteins that
typically contain less than 200 amino acid residues and
consists of the GTPase domain only (some of the
eukaryotic homologs contain an N-terminal extension of
about 120 residues that might be involved in organellar
targeting). Homologs of yihA are found in most
Gram-positive and Gram-negative pathogenic bacteria,
with the exception of Mycobacterium tuberculosis. The
broad-spectrum nature of YihA and its essentiality for
cell viability in bacteria make it an attractive
antibacterial target.
Length = 170
Score = 25.5 bits (57), Expect = 6.7
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 23 LLGASGCGKTTLLSCIVGRRRL 44
G S GK++L++ + R++L
Sbjct: 4 FAGRSNVGKSSLINALTNRKKL 25
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 25.3 bits (55), Expect = 6.7
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 20 KYGLLGASGCGKTTL 34
+ G G GK+TL
Sbjct: 1 IILITGPPGSGKSTL 15
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 25.1 bits (55), Expect = 6.8
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 7 TKKKKKKKKKKKKK 20
KKKKKKKKKK K
Sbjct: 19 VKKKKKKKKKKNKS 32
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 25.6 bits (56), Expect = 6.9
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 10/34 (29%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP 56
+ G +G GKTT+L I W L GK
Sbjct: 24 IYGPNGSGKTTILDAIR----------WALYGKT 47
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the
F0F1-ATPase, in that they both are proton driven rotary
molecular devices. However, the main function of the
bacterial flagellar motor is to rotate the flagellar
filament for cell motility. Intracellular pathogens
such as Salmonella and Chlamydia also have proteins
which are similar to the flagellar-specific ATPase, but
function in the secretion of virulence-related proteins
via the type III secretory pathway.
Length = 326
Score = 25.7 bits (57), Expect = 6.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 17 KKKKYGLLGASGCGKTTLLSCIV 39
K ++ G+ SG GK+TLL I
Sbjct: 68 KGQRLGIFAGSGVGKSTLLGMIA 90
>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family
are found in a variety of single stranded RNA viruses.
Length = 105
Score = 25.3 bits (56), Expect = 7.0
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRV--GYMPQEIALYGE 80
L G GCGK+T L+ + R L + K + S P GY Q + + +
Sbjct: 3 LYGPPGCGKST-LAKYLARALLKHLGL----PKKDSVYSRNPDDDFWDGYTGQPVVIIDD 57
Query: 81 FS 82
F
Sbjct: 58 FG 59
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 25.8 bits (57), Expect = 7.0
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 2 KTNTNTKKKKKKKKKKKKK 20
K+ KKKK K+ K K
Sbjct: 253 KSKEEIKKKKPKESKGVKA 271
Score = 25.4 bits (56), Expect = 10.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 1 MKTNTNTKKKKKKKKKKKKK 20
K + + KKKK K+ K
Sbjct: 250 KKRKSKEEIKKKKPKESKGV 269
>gnl|CDD|215451 PLN02840, PLN02840, tRNA dimethylallyltransferase.
Length = 421
Score = 25.9 bits (57), Expect = 7.2
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 3 TNTNTKKKKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI 49
T K KK+K + G +G GK+ L + +RLN GEI
Sbjct: 6 ATTALSGSGASKTKKEKVIVISGPTGAGKSRLALELA--KRLN-GEI 49
>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine
Kinases, Receptor tyrosine kinase-like Orphan Receptors.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor (Ror) subfamily; catalytic
(c) domain. The Ror subfamily consists of Ror1, Ror2,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Ror proteins are orphan
receptor tyr kinases (RTKs) containing an extracellular
region with immunoglobulin-like, cysteine-rich, and
kringle domains, a transmembrane segment, and an
intracellular catalytic domain. Ror RTKs are unrelated
to the nuclear receptor subfamily called
retinoid-related orphan receptors (RORs). RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. Ror kinases
are expressed in many tissues during development. They
play important roles in bone and heart formation.
Mutations in human Ror2 result in two different bone
development genetic disorders, recessive Robinow
syndrome and brachydactyly type B. Drosophila Ror is
expressed only in the developing nervous system during
neurite outgrowth and neuronal differentiation,
suggesting a role for Drosophila Ror in neural
development. More recently, mouse Ror1 and Ror2 have
also been found to play an important role in regulating
neurite growth in central neurons. Ror1 and Ror2 are
believed to have some overlapping and redundant
functions.
Length = 283
Score = 25.9 bits (57), Expect = 7.2
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 63 VPGKR---VGYMPQEIALYGEFSIKETMMYFG 91
V K V +MP E LYG+F+ + + FG
Sbjct: 182 VQSKSLLPVRWMPPEAILYGKFTTESDIWSFG 213
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 25.8 bits (57), Expect = 7.3
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 6/22 (27%)
Query: 24 LGASGCGKTTLLSCIVGRRRLN 45
+G SGCGK+T+L R LN
Sbjct: 36 IGPSGCGKSTVL------RTLN 51
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 25.7 bits (57), Expect = 7.4
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 25 GASGCGKTTL 34
G SGCGK+TL
Sbjct: 48 GESGCGKSTL 57
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 25.8 bits (58), Expect = 7.6
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 100 EIDDRLQFLLN 110
EI +RL+FL++
Sbjct: 465 EIRERLKFLVD 475
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic
transport function, neither active nor passive, but
associates with the potassium channel proteins Kir6.1
or Kir6.2 to form the ATP-sensitive potassium (K(ATP))
channel. Within the channel complex, SUR serves as a
regulatory subunit that fine-tunes the gating of Kir6.x
in response to alterations in cellular metabolism. It
constitutes a major pharmaceutical target as it binds
numerous drugs, K(ATP) channel openers and blockers,
capable of up- or down-regulating channel activity.
Length = 218
Score = 25.8 bits (56), Expect = 7.6
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR----VGYMPQE 74
++G GCGK++LL I+G + G++ R V Y Q+
Sbjct: 32 IVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQK 87
>gnl|CDD|235646 PRK05925, PRK05925, aspartate kinase; Provisional.
Length = 440
Score = 25.9 bits (57), Expect = 7.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 22 GLLGASGCGKTTLL 35
G +GA+ GKTT+L
Sbjct: 172 GFIGANSSGKTTVL 185
>gnl|CDD|180007 PRK05309, PRK05309, 30S ribosomal protein S11; Validated.
Length = 128
Score = 25.1 bits (56), Expect = 7.8
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 8 KKKKKKKKKKKKK 20
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 25.4 bits (56), Expect = 8.0
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 2 KTNTNTKKKKKKKKKKKKK 20
K KKKKKKKKKK K
Sbjct: 110 KQKKQKKKKKKKKKKKTSK 128
>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine
triphosphatases (GTPases). Members of the Rho (Ras
homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1,
RhoBTB, and Rop. There are 22 human Rho family members
identified currently. These proteins are all involved
in the reorganization of the actin cytoskeleton in
response to external stimuli. They also have roles in
cell transformation by Ras in cytokinesis, in focal
adhesion formation and in the stimulation of
stress-activated kinase. These various functions are
controlled through distinct effector proteins and
mediated through a GTP-binding/GTPase cycle involving
three classes of regulating proteins: GAPs
(GTPase-activating proteins), GEFs (guanine nucleotide
exchange factors), and GDIs (guanine nucleotide
dissociation inhibitors). Most Rho proteins contain a
lipid modification site at the C-terminus, with a
typical sequence motif CaaX, where a = an aliphatic
amino acid and X = any amino acid. Lipid binding is
essential for membrane attachment, a key feature of
most Rho proteins. Since crystal structures often lack
C-terminal residues, this feature is not available for
annotation in many of the CDs in the hierarchy.
Length = 171
Score = 25.6 bits (57), Expect = 8.0
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 20 KYGLLGASGCGKTTLLSC 37
K ++G GKT LL
Sbjct: 2 KIVVVGDGAVGKTCLLIS 19
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 25.6 bits (56), Expect = 8.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 20 KYGLLGASGCGKTTLLS 36
K GL G +G GKT LL+
Sbjct: 140 KAGLFGGAGVGKTVLLT 156
>gnl|CDD|220633 pfam10214, Rrn6, RNA polymerase I-specific transcription-initiation
factor. RNA polymerase I-specific
transcription-initiation factor Rrn6 and Rrn7 represent
components of a multisubunit transcription factor
essential for the initiation of rDNA transcription by
Pol I. These proteins are found in fungi.
Length = 753
Score = 25.9 bits (57), Expect = 8.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 10 KKKKKKKKKKKYG 22
KKKKKKK+K G
Sbjct: 740 ASKKKKKKKRKGG 752
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional.
Length = 439
Score = 25.9 bits (57), Expect = 8.3
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 19 KKYGLLGASGCGKTTLLSCIV 39
++ G+ A+G GK+TLL+ ++
Sbjct: 163 QRMGIFAAAGGGKSTLLASLI 183
>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional.
Length = 201
Score = 25.3 bits (56), Expect = 8.4
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 10 KKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT 58
+ + +K + +G S GK+TL+ R TG+ +G +PG
Sbjct: 1 MFETRPDRKPEIVFVGRSNVGKSTLV-------RELTGKKVRVGKRPGV 42
>gnl|CDD|225364 COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase
PilT [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 353
Score = 25.7 bits (57), Expect = 8.5
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 18 KKKYGLL---GASGCGKTTLLSCIVG 40
+ GL+ G +G GK+T L+ ++
Sbjct: 122 ESPRGLILVTGPTGSGKSTTLAAMID 147
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the
ABC transporter family include the Walker A and Walker
B motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known
as the ABC signature sequence.
Length = 204
Score = 25.3 bits (56), Expect = 8.5
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 25 GASGCGKTTLLSCI 38
G +G GKTT++ +
Sbjct: 29 GQNGAGKTTIIEAL 42
>gnl|CDD|234896 PRK01077, PRK01077, cobyrinic acid a,c-diamide synthase;
Validated.
Length = 451
Score = 25.5 bits (57), Expect = 8.7
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 26 ASGCGKTTL 34
ASG GKTT+
Sbjct: 12 ASGSGKTTV 20
>gnl|CDD|233193 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 25.7 bits (57), Expect = 9.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 23 LLGASGCGKTTLLS 36
+ G +G GKTTLL+
Sbjct: 439 IFGPTGSGKTTLLN 452
>gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of
preribosomal RNA processing complexes. Bms1 is an
essential, evolutionarily conserved, nucleolar protein.
Its depletion interferes with processing of the 35S
pre-rRNA at sites A0, A1, and A2, and the formation of
40S subunits. Bms1, the putative endonuclease Rc11, and
the essential U3 small nucleolar RNA form a stable
subcomplex that is believed to control an early step in
the formation of the 40S subumit. The C-terminal domain
of Bms1 contains a GTPase-activating protein (GAP) that
functions intramolecularly. It is believed that Rc11
activates Bms1 by acting as a guanine-nucleotide
exchange factor (GEF) to promote GDP/GTP exchange, and
that activated (GTP-bound) Bms1 delivers Rc11 to the
preribosomes.
Length = 231
Score = 25.4 bits (56), Expect = 9.1
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 25 GASGCGKTTLLSCIV---GRRRLNT--GEIWVLGGK 55
G G GK+TL+ ++ ++ L+ G I ++ GK
Sbjct: 46 GPPGVGKSTLIRSLIKRYTKQNLSDIKGPITIVTGK 81
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This
Pfam entry includes some of the AAA proteins not
detected by the pfam00004 model.
Length = 135
Score = 24.9 bits (55), Expect = 9.7
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 23 LLGASGCGKTTL 34
L+G G GK+ L
Sbjct: 4 LVGPPGTGKSEL 15
>gnl|CDD|239466 cd03368, Ribosomal_S12, S12-like family, 30S ribosomal protein
S12 subfamily; S12 is located at the interface of the
large and small ribosomal subunits of prokaryotes,
chloroplasts and mitochondria, where it plays an
important role in both tRNA and ribosomal subunit
interactions. S12 is essential for maintenance of a
pretranslocation state and, together with S13,
functions as a control element for the rRNA- and
tRNA-driven movements of translocation. Antibiotics
such as streptomycin bind S12 and cause the ribosome to
misread the genetic code.
Length = 108
Score = 24.8 bits (55), Expect = 9.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 4 NTNTKKKKKKKKKKKKKYGLLG 25
N +K +KKKKKK K L G
Sbjct: 3 NQLIRKGRKKKKKKSKSPALEG 24
>gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase.
Snu114p subfamily. Snu114p is one of several proteins
that make up the U5 small nuclear ribonucleoprotein
(snRNP) particle. U5 is a component of the spliceosome,
which catalyzes the splicing of pre-mRNA to remove
introns. Snu114p is homologous to EF-2, but typically
contains an additional N-terminal domain not found in
Ef-2. This protein is part of the GTP translation
factor family and the Ras superfamily, characterized by
five G-box motifs.
Length = 213
Score = 25.3 bits (56), Expect = 9.8
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPG 57
+ G GKT+LL ++ + T + LG KP
Sbjct: 4 CIAGHLHHGKTSLLDMLIEQTHKRTPSVK-LGWKPL 38
>gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide
binding). The alpha subunit of G proteins contains the
guanine nucleotide binding site. The heterotrimeric
GNP-binding proteins are signal transducers that
communicate signals from many hormones,
neurotransmitters, chemokines, and autocrine and
paracrine factors. Extracellular signals are received
by receptors, which activate the G proteins, which in
turn route the signals to several distinct
intracellular signaling pathways. The alpha subunit of
G proteins is a weak GTPase. In the resting state,
heterotrimeric G proteins are associated at the
cytosolic face of the plasma membrane and the alpha
subunit binds to GDP. Upon activation by a receptor GDP
is replaced with GTP, and the G-alpha/GTP complex
dissociates from the beta and gamma subunits. This
results in activation of downstream signaling pathways,
such as cAMP synthesis by adenylyl cyclase, which is
terminated when GTP is hydrolized and the heterotrimers
reconstitute.
Length = 315
Score = 25.2 bits (56), Expect = 9.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 23 LLGASGCGKTTLL 35
LLGA GK+T+L
Sbjct: 5 LLGAGESGKSTIL 17
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.138 0.415
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,515,661
Number of extensions: 590802
Number of successful extensions: 3408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3057
Number of HSP's successfully gapped: 584
Length of query: 125
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 40
Effective length of database: 7,167,512
Effective search space: 286700480
Effective search space used: 286700480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)