RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy340
(125 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 74.1 bits (183), Expect = 2e-17
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
+GL+G +G GKTT L I + ++G + V G + V K + Y+P+E Y
Sbjct: 44 FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR-KLISYLPEEAGAYRN 102
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124
E + + + + EI++ ++ L V
Sbjct: 103 MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTY 147
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 73.3 bits (181), Expect = 2e-17
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
G +G GKTTLL I + GEI G P TK ++ ++P+EI + +
Sbjct: 38 VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG-VPITKVK----GKIFFLPEEIIVPRK 92
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPSQSRLVKNL 124
S+++ + ++G+ + + L +++ + + L
Sbjct: 93 ISVEDYLKAVASLYGV--KVNKNEIMDALESVEVLDLKKKLGEL 134
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 59.1 bits (144), Expect = 9e-12
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 12/109 (11%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPG--KRVGYMPQ 73
K K+ L G +G GKTTLL+ + +G + + G PG G + +G++
Sbjct: 45 AKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSH 104
Query: 74 EIALYGEFSIKET------MMYFGWI--FGMETPEIDDRLQFLLNFLDL 114
+ F E F I + EI + LL + +
Sbjct: 105 SLLEK--FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM 151
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 58.7 bits (143), Expect = 1e-11
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKP-GTKGSGVP-GKR-VGYMPQEIAL 77
++GASGCGKTTLL C+ G + ++GEI L GK +K + +P +R +GY+ QE L
Sbjct: 35 IIGASGCGKTTLLRCLAGFEQPDSGEIS-LSGKTIFSKNTNLPVRERRLGYLVQEGVL 91
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 52.2 bits (126), Expect = 2e-09
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALYGEF 81
LLG +G GK+ L I G + + GE+ L G T P +R +G++PQ+ AL+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVR-LNGADITPLP--PERRGIGFVPQDYALFPHL 85
Query: 82 SIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP 115
S+ + +G + +E E D R++ + L +
Sbjct: 86 SVYRNIA-YG-LRNVERVERDRRVREMAEKLGIA 117
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 50.6 bits (122), Expect = 8e-09
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 19/84 (22%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
+LG +GCGK+TLL ++G R G+I V + +G++PQ + +
Sbjct: 35 AVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY-------------QSIGFVPQFFSSPFAY 81
Query: 82 SIKET-MM----YFGWIFGMETPE 100
S+ + +M + F
Sbjct: 82 SVLDIVLMGRSTHINT-FAKPKSH 104
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 48.9 bits (117), Expect = 5e-08
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 16/105 (15%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGE 80
G+LG +G GKTT +VG + G + + + Y PQ I +
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSVT------------PEKQILSYKPQRIFPNYD 344
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS-QSRLVKNL 124
+++ Y + + L+L V +L
Sbjct: 345 GTVQ---QYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDL 386
Score = 42.7 bits (101), Expect = 7e-06
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI 75
K G+LG +G GKTT+L + G N G+ GK GK + +E+
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGK-DEVLKRFRGKEIYNYFKEL 81
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 48.3 bits (116), Expect = 6e-08
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVP-GKRVGYMPQEIALYGE 80
L+G +G GK+TLL+ + G G I G+P S Y+ Q+
Sbjct: 30 HLVGPNGAGKSTLLARMAGMTS-GKGSIQ-FAGQPLEAWSATKLALHRAYLSQQQTPPFA 87
Query: 81 FSIKE 85
+
Sbjct: 88 TPVWH 92
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 47.9 bits (115), Expect = 8e-08
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGV-PGKR-VGYMPQEIALY 78
+LG +G GKT L I G ++G I L GK T + P K + ++ Q +L+
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDSGRIL-LDGKDVT---DLSPEKHDIAFVYQNYSLF 84
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 46.5 bits (111), Expect = 3e-07
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGV---PGKR-VGYMPQEIALY 78
+LG SG GKTT + I G +TGE++ + + P R +G + Q ALY
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELY-FDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94
Query: 79 GEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
+ E + + M EI R++ + LD+
Sbjct: 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI 130
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 46.5 bits (111), Expect = 3e-07
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 13/104 (12%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR-VGYMPQEIALYGEF 81
LLG SG GKTT+L I G R G++W +GGK T P KR VG + Q AL+
Sbjct: 46 LLGPSGSGKTTILRLIAGLERPTKGDVW-IGGKRVTDLP--PQKRNVGLVFQNYALFQHM 102
Query: 82 SIKETMMYFGW-IFGMETPEIDDRLQFLLNFLDL-------PSQ 117
++ + + FG + E+D R++ LL F+ L P +
Sbjct: 103 TVYDNVS-FGLREKRVPKDEMDARVRELLRFMRLESYANRFPHE 145
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 45.8 bits (109), Expect = 6e-07
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG----GKPGTKGSGVPGKRVGYMPQEIAL 77
GL+G +G GK+T L + G+++ N G +GS + + +I
Sbjct: 107 GLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKA 166
Query: 78 -----YGEF---SIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
Y + +IK + G + + + + ++ + L L
Sbjct: 167 IIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQL 211
Score = 43.9 bits (104), Expect = 3e-06
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIAL 77
++G +G GKTTL+ + G + + G+ +P V PQ+IA
Sbjct: 381 LVMMGENGTGKTTLIKLLAGALKPDEGQD-------------IPKLNVSMKPQKIAP 424
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 43.9 bits (104), Expect = 2e-06
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 17 KKKKYGLLGASGCGKTTLLSCIVGRRRL--NTGEIWVLGGKPGTKGSGVPGKRVGYMPQE 74
+K +LG +G GKTTLL I G L +G I++ G K + + Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISG---LLPYSGNIFI-NGMEVRK---IR-NYIRYSTNL 80
Query: 75 IALYG-EFSIKETMMYFGWIFGMETPEIDDRLQFL 108
Y ++ + + + + G++ + L+ L
Sbjct: 81 PEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKAL 115
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 44.3 bits (104), Expect = 2e-06
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 15/70 (21%)
Query: 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEI-ALY 78
+YG+ G +GCGK+TL+ I + + G P + R Y+ +I +
Sbjct: 463 RYGICGPNGCGKSTLMRAIANGQ---------VDGFPTQEEC-----RTVYVEHDIDGTH 508
Query: 79 GEFSIKETMM 88
+ S+ + +
Sbjct: 509 SDTSVLDFVF 518
Score = 41.9 bits (98), Expect = 1e-05
Identities = 14/98 (14%), Positives = 37/98 (37%), Gaps = 11/98 (11%)
Query: 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYG 79
+ ++G +G GK+TL++ + G +GE++ R+ Y+ Q +
Sbjct: 701 RIAVIGPNGAGKSTLINVLTGELLPTSGEVY--------THENC---RIAYIKQHAFAHI 749
Query: 80 EFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPSQ 117
E + +T + + + + + ++
Sbjct: 750 ESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAE 787
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 41.9 bits (99), Expect = 1e-05
Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 24/107 (22%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEF 81
G++G +G GKTT + + G G++ V Y PQ I E
Sbjct: 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKV-------------EWDLTVAYKPQYIKAEYEG 432
Query: 82 SIKETMMYFGWIFGMETPEIDDRLQF---LLNFLDLPS-QSRLVKNL 124
++ E + +++ +++ + LL L + R V++L
Sbjct: 433 TVYE------LLSKIDSSKLNSN-FYKTELLKPLGIIDLYDRNVEDL 472
Score = 36.9 bits (86), Expect = 8e-04
Identities = 17/112 (15%), Positives = 41/112 (36%), Gaps = 17/112 (15%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI---W--VLGGKPGTKGS----GVPGK 66
K G++G +G GKTT + + G+ N E W V+ G + +
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 174
Query: 67 RVGYMPQE--IALYGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLPS 116
+ + + + L + + ++ + + + ++ L+L +
Sbjct: 175 EIRPVVKPQYVDLLPKAVKGKVRE------LLKKVDEVGKFEEVVKELELEN 220
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 41.0 bits (97), Expect = 3e-05
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 22/92 (23%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP---------- 72
LLG SG GK+TLL I G + +G+I+ K V +P
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPTSGKIY------------FDEKDVTELPPKDRNVGLVF 81
Query: 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDR 104
Q ALY ++ + + + + EID +
Sbjct: 82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKK 113
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 40.7 bits (96), Expect = 4e-05
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 22/92 (23%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP---------- 72
LLG SGCGKTT L I G G I+ + V Y+P
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEEPTEGRIY------------FGDRDVTYLPPKDRNISMVF 89
Query: 73 QEIALYGEFSIKETMMYFGWIFGMETPEIDDR 104
Q A++ ++ E + + I EID R
Sbjct: 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR 121
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 40.0 bits (94), Expect = 6e-05
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEI 49
G++G +G GKTT + + G G+I
Sbjct: 316 GIVGPNGIGKTTFVKMLAGVEEPTEGKI 343
Score = 37.3 bits (87), Expect = 6e-04
Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 17/112 (15%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP-QE 74
K+ G++G +G GK+T + + G+ N L G + + R +
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPN------LCGDNDSWDGVIRAFRGNELQNYF 98
Query: 75 IALYGE---FSIKETM------MYFGWI-FGMETPEIDDRLQFLLNFLDLPS 116
L +K G + ++ + +L+ ++ L+L +
Sbjct: 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELEN 150
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport,
alpha and beta proteins (A/B) TM0421, structural
genomics, NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 39.9 bits (94), Expect = 7e-05
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55
LLG SGCGKTT L + G + +GEI+
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYKPTSGEIYF-DDV 65
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 39.6 bits (93), Expect = 7e-05
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQE 74
++ + + G++G GKT+LL I+G + G+I G R+ + Q
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQN 107
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 39.5 bits (93), Expect = 9e-05
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK---PGTKGSGVPGK-RVGYMP-QEIAL 77
LLG SGCGKTT L I G + G+I++ G K KG VP K R M Q AL
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92
Query: 78 YGEFSIKETMMYFGW-IFGMETPEIDDR 104
Y ++ + + F + + EID R
Sbjct: 93 YPHMTVYDNIA-FPLKLRKVPRQEIDQR 119
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 39.5 bits (93), Expect = 9e-05
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 13/59 (22%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQE 74
+ ++G GCGK++LLS ++ E+ + G KGS V Y+PQ+
Sbjct: 29 PEGALVAVVGQVGCGKSSLLSALL-------AEMDKVEGHVAIKGS------VAYVPQQ 74
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 39.1 bits (92), Expect = 9e-05
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQE 74
++ + + G++G GKT+LL I+G + G+I G R+ + Q
Sbjct: 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQF 77
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 38.7 bits (91), Expect = 2e-04
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIA 76
++G+SG GK+T L CI + + G I V G+ G+ ++
Sbjct: 37 IIGSSGSGKSTFLRCINFLEKPSEGAIIV-NGQNINLVRDKDGQLKVADKNQLR 89
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 38.2 bits (90), Expect = 2e-04
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
L+GA+G GKTT LS I G R G+I G
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics,
cell membrane, cobalt transport, hydrolase, ION
transport; 2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 36.8 bits (86), Expect = 7e-04
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPG--KRVGY 70
K+ + +LG +G GK+TL G + ++G I G+ + +G
Sbjct: 32 KRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGI 88
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type
I ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 36.5 bits (85), Expect = 9e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
YG++GASG GK+TL+ C+ R G + V G
Sbjct: 57 YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG 89
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB:
2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
++G SG GK+T L C+ + GEI + G
Sbjct: 55 VIGPSGSGKSTFLRCLNLLEDFDEGEIIIDG 85
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A*
3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A*
1q1b_A
Length = 381
Score = 36.0 bits (84), Expect = 0.001
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGK 55
+G SGCGK+TLL I G + +G+++ +G K
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITSGDLF-IGEK 65
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.006
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 11/63 (17%)
Query: 2 KTNTNTKKKKKKKKK-----KKKKY-GLLGASGCGKTTLLSCIV---GRRRLNTGEI-WV 51
K N + + K ++ + K + G G GKT + + + +I W+
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 52 -LG 53
L
Sbjct: 188 NLK 190
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 34.0 bits (79), Expect = 0.007
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 23/123 (18%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMP-----QEI 75
++G +G GK+TL++ I G + + G ++ K T + + Q
Sbjct: 36 TLIIGPNGSGKSTLINVITGFLKADEGRVY-FENKDIT---NKEPAELYHYGIVRTFQTP 91
Query: 76 ALYGEFSIKETMM----------YFGWIFGM---ETPEIDDRLQFLLNFLDLPSQS-RLV 121
E ++ E ++ + + E+ ++ +L FL L R
Sbjct: 92 QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151
Query: 122 KNL 124
L
Sbjct: 152 GEL 154
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 33.3 bits (77), Expect = 0.011
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
+ + + G +G GK+TLL + G +G++ G
Sbjct: 31 NEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG 68
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 33.0 bits (75), Expect = 0.012
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 9 KKKKKKKKKKKKYGLLGASGCGKTTLLSCI 38
++ + K + L+G GK+++ +
Sbjct: 11 RENLYFQGSKPRILLMGLRRSGKSSIQKVV 40
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 32.9 bits (76), Expect = 0.015
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEI 49
G SG GK++LL+ I L T EI
Sbjct: 178 FAGQSGVGKSSLLNAISPELGLRTNEI 204
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 32.5 bits (75), Expect = 0.018
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEI 49
+ G SG GK++LL+ I +L E+
Sbjct: 174 MAGLSGVGKSSLLNAINPGLKLRVSEV 200
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 32.4 bits (74), Expect = 0.022
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI 49
+K ++ +G GKT L RL TG+
Sbjct: 2 ARKSSQRAVLFVGLCDSGKTLLFV------RLLTGQY 32
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 32.0 bits (73), Expect = 0.025
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 10 KKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNT 46
+ + G GKT+LL+ + T
Sbjct: 40 GSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT 76
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 31.9 bits (72), Expect = 0.039
Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 2/95 (2%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVL--GGKPGTKGSGVPGKRVGYMPQEIALYGE 80
+L G GK+ ++ R + + ++ + + G + E +
Sbjct: 40 ILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKEMCRKLGGVWINCTGGEGKINPL 99
Query: 81 FSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDLP 115
+ + + +Q L F L
Sbjct: 100 QVRLRPVEEEDEENAVFQSPLALHIQTLRTFFSLY 134
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 31.3 bits (71), Expect = 0.054
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNT 46
K+K + + G GKT+LL+ + T
Sbjct: 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT 40
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 31.3 bits (71), Expect = 0.065
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 22 GLLGASGCGKTTLLSCIV-----GRRRLNTGEIWVLGGK 55
+ G +GCGK+ L + V + G WV GK
Sbjct: 151 TIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 30.8 bits (70), Expect = 0.095
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL---NTGEIWVLGGKPGTKGSGVPG--KRVGY 70
KK + L+G+SGCGK+T++ + R G + L GK K V ++G
Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLL---ERFYDPMAGSV-FLDGKE-IKQLNVQWLRAQLGI 1111
Query: 71 MPQEIALYGEFSIKETMMYFGWIFGMETPEIDD 103
+ QE L+ SI E + Y G + +
Sbjct: 1112 VSQEPILFDC-SIAENIAY-----GDNSRVVSY 1138
Score = 28.5 bits (64), Expect = 0.57
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 23 LLGASGCGKTTLLS 36
L+G SGCGK+T +
Sbjct: 421 LVGNSGCGKSTTVQ 434
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 30.5 bits (69), Expect = 0.10
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 16 KKKKKYGLLGASGCGKTTLLSCIVGRRRL--NTGEIWVLGGKPGTKGSGVPGKRVGYMPQ 73
++ GLLG +G GK+TLLS + RL GEI + G + K G +PQ
Sbjct: 45 SPGQRVGLLGRTGSGKSTLLSAFL---RLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQ 101
Query: 74 EIALY 78
++ ++
Sbjct: 102 KVFIF 106
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 30.7 bits (69), Expect = 0.10
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 2 KTNTNTKK--KKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT 58
+ + + K ++G + GK+T ++ ++ T + PGT
Sbjct: 142 AKGQGIAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGT 200
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 30.4 bits (68), Expect = 0.11
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 1 MKTNTNTKKKKKKKKKKKKKYGLLGASGCGKTTL 34
M + K + ++ ++G SG GK+++
Sbjct: 1 MVMSIEYKSEAAAVRRFPGSIVVMGVSGSGKSSV 34
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 30.3 bits (69), Expect = 0.11
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 23 LLGASGCGKTTLLSCIVGRR-RLNTGEI 49
G SG GK++LL+ ++G + + T ++
Sbjct: 220 FAGQSGVGKSSLLNALLGLQNEILTNDV 247
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 30.1 bits (69), Expect = 0.13
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 25/80 (31%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRL---NTGEIWVLGGKPGTKGSGVPGKRV---------G 69
G++G SG GK+TL I +R G++ + G G
Sbjct: 39 GIVGRSGSGKSTLTKLI---QRFYIPENGQVLI---------DGHDLALADPNWLRRQVG 86
Query: 70 YMPQEIALYGEFSIKETMMY 89
+ Q+ L SI + +
Sbjct: 87 VVLQDNVLLNR-SIIDNISL 105
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 30.3 bits (69), Expect = 0.15
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 23 LLGASGCGKTTLLSCIVGRRRL---NTGEIWVLGGKPGTKGSGVPG---KRVGYMPQEIA 76
L+G SG GK+T+LS + RL +G I L G + + P ++G + QE
Sbjct: 375 LVGPSGSGKSTVLSLL---LRLYDPASGTI-SLDGHDIRQLN--PVWLRSKIGTVSQEPI 428
Query: 77 LYGEFSIKETMMY 89
L+ SI E + Y
Sbjct: 429 LFSC-SIAENIAY 440
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 29.6 bits (66), Expect = 0.16
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 21 YGLLGASGCGKTTLLSCIV---GRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIAL 77
++G S GKTTL++ ++ R L + G GK + A
Sbjct: 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA--HGDFEIDKEGKDSWKIYNSGAD 62
Query: 78 YGEFSIKETMMYFGWIFGMETPEIDDRLQFLLNFLDL 114
S + + + E ++D + L+ DL
Sbjct: 63 VVIAS-PVKLAFIRRVSEEEGNDLDWIYERYLSDYDL 98
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 29.9 bits (68), Expect = 0.18
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLG 53
G+ SG GK+TLL I + +I VL
Sbjct: 75 GIFAGSGVGKSTLLGMIC---NGASADIIVLA 103
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 29.8 bits (66), Expect = 0.20
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 11 KKKKKKKKKKYGLL--GASGCGKTTLLSCIVGRRRLNTGEIW 50
+K KK ++ L+ G SG GK+TL++ + I
Sbjct: 9 HRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIS 50
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 29.5 bits (67), Expect = 0.23
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 4 NTNTKKKKKKKKKKKKKYGLL----GASGCGKTTLLSCIVGRRRLN 45
+ + + K G++ SGCGKTT+ + ++ +++ N
Sbjct: 9 MGTLEAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 29.4 bits (67), Expect = 0.23
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 23 LLGASGCGKTTLLSCIVGRRRL---NTGEIWVLGGKPGTKGSGVPGKR--VGYMPQEIAL 77
G SG GK+T+ S + R GEI + G+P + R +G++ Q+ A+
Sbjct: 33 FAGPSGGGKSTIFSLL---ERFYQPTAGEI-TIDGQP-IDNISLENWRSQIGFVSQDSAI 87
Query: 78 YGEFSIKETMMY 89
+I+E + Y
Sbjct: 88 MAG-TIRENLTY 98
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 29.8 bits (67), Expect = 0.25
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 22 GLL--GASGCGKTTLLSCIVGRRRLNTGEI 49
G+L G G GKT + + I
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLI 269
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 28.7 bits (63), Expect = 0.34
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 14 KKKKKKKYGLLGASGCGKTTLLSCIV 39
K SG GKTTLL ++
Sbjct: 2 GKTMIPLLAFAAWSGTGKTTLLKKLI 27
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding
protein; structural genomics; 1.70A {Aquifex aeolicus}
PDB: 2pcl_A
Length = 224
Score = 29.0 bits (66), Expect = 0.35
Identities = 11/16 (68%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query: 25 GASGCGKTTLLSCIVG 40
GASG GK+TLL I+G
Sbjct: 37 GASGSGKSTLLY-ILG 51
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 29.2 bits (66), Expect = 0.35
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 22 GLLGASGCGKTTLLSCIV 39
GL SG GK+ LL +
Sbjct: 161 GLFAGSGVGKSVLLGMMA 178
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 29.1 bits (66), Expect = 0.36
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 22 GLLGASGCGKTTLLSCI 38
+G SG GK+TL++ I
Sbjct: 371 AFVGMSGGGKSTLINLI 387
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 28.9 bits (64), Expect = 0.36
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 19 KKYGLLGASGCGKTTLLSCIV 39
+ ++G GKTTL+ V
Sbjct: 5 NVWQVVGYKHSGKTTLMEKWV 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 28.7 bits (65), Expect = 0.38
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 25/79 (31%)
Query: 23 LLGASGCGKTTLLSCIVGRRRL---NTGEIWVLGGKPGTKGSGVPGK---------RVGY 70
L+G +G GK+T+ + + + L G++ + G P +V
Sbjct: 50 LVGPNGSGKSTVAALL---QNLYQPTGGKVLL---------DGEPLVQYDHHYLHTQVAA 97
Query: 71 MPQEIALYGEFSIKETMMY 89
+ QE L+G S +E + Y
Sbjct: 98 VGQEPLLFGR-SFRENIAY 115
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 28.8 bits (64), Expect = 0.38
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSG-VPGKRV 68
L+G +G GK+ + I+GR+ ++G K K S +
Sbjct: 34 LVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETEL 80
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 28.4 bits (64), Expect = 0.39
Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 31/84 (36%)
Query: 25 GASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIK 84
G G GK+ LL V + GK Y+ +
Sbjct: 43 GEEGAGKSHLLQAWVAQALE-------------------AGKNAAYIDAA-----SMPLT 78
Query: 85 ETMMYFGWIFGMETPEIDDRLQFL 108
+ ++ +D ++ L
Sbjct: 79 DAAFEAEYLA------VDQ-VEKL 95
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 28.9 bits (64), Expect = 0.41
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 23 LLGASGCGKTTL 34
++G SG GKTT+
Sbjct: 34 VMGVSGSGKTTI 45
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal
transducing protein, cyclase, effector enzyme; HET: GSP
FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB:
1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C*
1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C*
3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 29.0 bits (64), Expect = 0.43
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 9 KKKKKKKKKKKKYGLLGASGCGKTTLLS 36
+K K+ + + LLGA GK+T++
Sbjct: 31 QKDKQVYRATHRLLLLGAGESGKSTIVK 58
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 28.8 bits (64), Expect = 0.43
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 18 KKKYGLLGASGCGKTTLLSCI 38
K L+G SG GK+++ S I
Sbjct: 3 GSKLLLMGRSGSGKSSMRSII 23
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 28.7 bits (65), Expect = 0.44
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 29/82 (35%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRL---NTGEIWVLGGKPGTKGSGVPGK---------RVG 69
+LG +G GK+TL++ I RL G + V + + +
Sbjct: 373 AVLGETGSGKSTLMNLIP---RLIDPERGRVEV---------DELDVRTVKLKDLRGHIS 420
Query: 70 YMPQEIALYGEFS--IKETMMY 89
+PQE L FS IKE + +
Sbjct: 421 AVPQETVL---FSGTIKENLKW 439
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 28.7 bits (64), Expect = 0.44
Identities = 9/56 (16%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 1 MKTNTNTKKKKKKKKKKKKKY--GLLGASGCGKTTLLSCIV---GRRRLNTGEIWV 51
M ++ + ++ + + G+ G + GK+++ + IV G+ ++ + V
Sbjct: 3 MAGDSEQTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQV 58
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 28.7 bits (65), Expect = 0.48
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEI 49
L G SG GK+++LS + G L T E+
Sbjct: 170 LAGPSGVGKSSILSRLTG-EELRTQEV 195
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 28.5 bits (63), Expect = 0.50
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 15 KKKKKKYGLLGASGCGKTTL 34
Y L+G SG GK+ +
Sbjct: 5 NHDHHIYVLMGVSGSGKSAV 24
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 28.4 bits (62), Expect = 0.51
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 8 KKKKKKKKKKKKKYGLLGASGCGKTTLLSCIV 39
+ + K G G GK+ I
Sbjct: 21 PEWFETGNKCPLFIFFSGPQGSGKSFTSIQIY 52
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 28.5 bits (64), Expect = 0.51
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 1 MKTNTNTKKKKKKKKKKKKKYGLLGASGCGKTTLL 35
++ NT K + KK K ++G GKT LL
Sbjct: 6 AFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLL 40
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc;
ABC-transporter, ABCB6, nucleotide binding domain, heme
BIOS transport protein; 2.00A {Homo sapiens} PDB:
3nh9_A* 3nha_A* 3nhb_A*
Length = 306
Score = 28.3 bits (64), Expect = 0.51
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 19 KKYGLLGASGCGKTTLLS 36
+ L+G SG GK+T+L
Sbjct: 81 QTLALVGPSGAGKSTILR 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 28.5 bits (63), Expect = 0.52
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 15 KKKKKKYGLLGASGCGKTTLLSCIV 39
K+KK + G +G G TTL I+
Sbjct: 42 KEKKHHVTINGPAGTGATTLTKFII 66
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 28.5 bits (64), Expect = 0.53
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 11 KKKKKKKKKKY--GLLGASGCGKTTLLSCIVGRRRLNTGEIWV 51
++ ++ + L GA G GK+TL + + L+ +
Sbjct: 13 ERLDPRQPGRQLVALSGAPGSGKSTLSNPLA--AALSAQGLPA 53
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 28.4 bits (63), Expect = 0.54
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 10 KKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI 49
K++ ++G G GK++ ++ I+G R ++
Sbjct: 31 NLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPF 70
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 28.3 bits (63), Expect = 0.55
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 11 KKKKKKKKKKYGLLGASGCGKTTLLSCI 38
++ ++K L G G GK+ LL+ +
Sbjct: 145 EQYPSAEQKGLYLYGDMGIGKSYLLAAM 172
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 27.9 bits (63), Expect = 0.62
Identities = 7/39 (17%), Positives = 22/39 (56%)
Query: 3 TNTNTKKKKKKKKKKKKKYGLLGASGCGKTTLLSCIVGR 41
+ ++ ++ + +K L+GASG G++ + + ++ +
Sbjct: 4 HHHHSSGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 27.9 bits (62), Expect = 0.70
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 1 MKTNTNTKKKKKKKKKKKKKY---GLLGASGCGKTTLLSCIV 39
M ++ + + K G+ G + GKTTL +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQ 42
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 27.9 bits (63), Expect = 0.74
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 19 KKYGLLGASGCGKTTLLS 36
L+G +G GK+T+
Sbjct: 47 TTCALVGHTGSGKSTIAK 64
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 28.0 bits (63), Expect = 0.74
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 3 TNTNTKKKKKKKKKKKKKYGLLGASG---CGKTTLLSCIVGRRRLNTGEIWVLGGKPG-T 58
T+ +K KK + + G GK+T+++ + G+R + G +PG T
Sbjct: 81 THKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRASSV------GAQPGIT 134
Query: 59 KG 60
KG
Sbjct: 135 KG 136
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 27.9 bits (62), Expect = 0.75
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 2 KTNTNTKKKKKKKKKKKKKYGLLGASGCGKTTLL 35
+ N + + + + K L+G CGKT +L
Sbjct: 11 RENLYFQGRAPQPVVARCKLVLVGDVQCGKTAML 44
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 28.1 bits (62), Expect = 0.79
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 9 KKKKKKKKKKKKYGLLGASGCGKTTLLS 36
++ +K ++ K LLGA GK+T++
Sbjct: 23 REDGEKAAREVKLLLLGAGESGKSTIVK 50
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 28.1 bits (63), Expect = 0.82
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 25 GASGCGKTTLLSCIVG 40
G +G GKTTL+ ++
Sbjct: 182 GETGSGKTTLMKALMQ 197
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 27.7 bits (62), Expect = 0.84
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 13 KKKKKKKKYGLLGASGCGKTTLLSCI 38
+ KK K L G+ G GKT LL+ I
Sbjct: 49 EPGKKMKGLYLHGSFGVGKTYLLAAI 74
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 27.7 bits (62), Expect = 0.89
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 25 GASGCGKTTLLSCIVG 40
G +G GKTT + I+
Sbjct: 178 GGTGSGKTTYIKSIME 193
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 27.9 bits (63), Expect = 0.89
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 23 LLGASGCGKTTLLSCI 38
L+G SG GK+T+ S I
Sbjct: 374 LVGRSGSGKSTIASLI 389
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 27.6 bits (62), Expect = 0.97
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 1 MKTNTNTKKKKKKKKKKKKKYGLLGASGCGKTTLLSCIVGR---RRLN 45
+ T+ + + + L G G GKTT +G+ R+LN
Sbjct: 9 SGVDLGTENLYFQSNAMVRIF-LTGYMGAGKTT-----LGKAFARKLN 50
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L
1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M*
1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P
1vp0_P
Length = 114
Score = 27.2 bits (61), Expect = 1.0
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 1 MKTNTNTKKKKKKKKKKKKKYG 22
M T T ++K + ++K +
Sbjct: 1 MATATTIRRKLRTRRKVRTTTA 22
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 27.5 bits (62), Expect = 1.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 23 LLGASGCGKTTLLSCI 38
L+G SG GK+T+ +
Sbjct: 374 LVGRSGSGKSTIANLF 389
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Length = 1180
Score = 28.0 bits (62), Expect = 1.0
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 96 METPEIDDRLQFLLNFLDLPSQSRLVKNL 124
ET E + + +LL + P + +++
Sbjct: 588 FETLEAQE-MLWLLQAVMTPERENTLRSA 615
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 27.4 bits (61), Expect = 1.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 14 KKKKKKKYGLLGASGCGKTTLL 35
+ K K ++G S CGKT LL
Sbjct: 3 NQNVKCKIVVVGDSQCGKTALL 24
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 27.4 bits (61), Expect = 1.1
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 13 KKKKKKKKYGLLGASGCGKTTLLSCIV 39
+ + G+ G + GK+T+ I+
Sbjct: 20 FQSMRPFLIGVSGGTASGKSTVCEKIM 46
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.3 bits (60), Expect = 1.1
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 20 KYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGY 70
K + G G GKTTL+ IV R W + KR G+
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPET-----KKRTGF 47
>3bos_A Putative DNA replication factor; P-loop containing nucleoside
triphosphate hydrolases, struct genomics; HET: MSE CDP;
1.75A {Shewanella amazonensis} PDB: 3sc3_A
Length = 242
Score = 27.2 bits (61), Expect = 1.2
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 32/87 (36%)
Query: 25 GASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFSIK 84
G G+T L+ R +R Y+P I ++
Sbjct: 59 GPVKSGRTHLIHAA-CARANE------------------LERRSFYIPLGIHASISTALL 99
Query: 85 ETMMYFGWIFGMETPE---IDDRLQFL 108
E G+E + IDD + +
Sbjct: 100 E---------GLEQFDLICIDD-VDAV 116
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 27.4 bits (60), Expect = 1.3
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 12/88 (13%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRVGYMPQEIALYGEFS 82
L+ G GK+ L + ++ G L G V Y+P E +
Sbjct: 35 LVSPGGAGKSMLALQLA--AQIAGGPDL-LEVGELPTG------PVIYLPAED---PPTA 82
Query: 83 IKETMMYFGWIFGMETPEIDDRLQFLLN 110
I + G E + +
Sbjct: 83 IHHRLHALGAHLSAEERQAVADGLLIQP 110
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 27.1 bits (61), Expect = 1.3
Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query: 25 GASGCGKTTLLSCIVG 40
G SG GK+T+L+ I+G
Sbjct: 38 GPSGSGKSTMLN-IIG 52
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 27.4 bits (61), Expect = 1.4
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVL 52
L G G GK+T + E+ +
Sbjct: 209 LTGGPGTGKSTTTKAVADLAESLGLEVGLC 238
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 27.4 bits (60), Expect = 1.4
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 8 KKKKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT 58
K+ + G +G GK++ ++ + G G G
Sbjct: 59 SDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKT--GVVEV 107
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 27.2 bits (60), Expect = 1.4
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 2 KTNTNTKK--KKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGT 58
K + + ++ ++G + GK+T ++ I+ I PGT
Sbjct: 144 AKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT-SYFPGT 201
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 27.1 bits (61), Expect = 1.5
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 16 KKKKKYGLL----GASGCGKTTLLSCIVGRRRLN 45
+ GLL G SG GK T+ + +
Sbjct: 2 NAMTERGLLIVLSGPSGVGKGTVREAVFKDPETS 35
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 26.9 bits (59), Expect = 1.7
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTG 47
L+G +G GK+ + I+ ++ +
Sbjct: 27 LVGKTGTGKSAAGNSILRKQAFESK 51
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 27.0 bits (59), Expect = 1.7
Identities = 4/38 (10%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 22 GLLGASGCGKTTLLSCIVGR---RRLNTGEIWVLGGKP 56
++ G ++ + +L I + P
Sbjct: 123 AVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVP 160
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 26.8 bits (59), Expect = 1.8
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 25 GASGCGKTTL---LSCIVGRRRLNTGEI 49
G GKTTL L+ + L+
Sbjct: 12 GHPATGKTTLSQALATGLRLPLLSKDAF 39
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 26.6 bits (59), Expect = 1.8
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 4 NTNTKKKKKKKKKKKKKYGLLGASGCGKTTLLSC 37
+ + + + K L+G GKT+L+
Sbjct: 6 EPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVS 39
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 27.0 bits (59), Expect = 1.8
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 11 KKKKKKKKKKYGLL--GASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKRV 68
++ G +G GKTTL N ++ + G K +
Sbjct: 5 HHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDN-YKVAYVNLDTGV-------KEL 56
Query: 69 GYMPQEIALYGEFSIKETM 87
Y P I + +++E M
Sbjct: 57 PYEP-SIDVREFVTVEEIM 74
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 26.6 bits (59), Expect = 1.8
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 1 MKTNTNTKKKKKKKKKKKKKYGLLGASGCGKTTLLSC 37
++ + +KK ++G CGKT LL
Sbjct: 8 HHHSSGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIV 44
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 26.7 bits (60), Expect = 1.8
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 18 KKKYGLL----GASGCGKTTLLSCIVGR 41
+ GLL G SG GK T+ I
Sbjct: 2 DNEKGLLIVLSGPSGVGKGTVRKRIFED 29
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 27.0 bits (59), Expect = 1.8
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 11 KKKKKKKKKKYGLL--GASGCGKTTLLSCIVGRRRLNT 46
K + + +L G +G GK+TL+ + +
Sbjct: 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE 70
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 26.7 bits (60), Expect = 2.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 23 LLGASGCGKTTLLS 36
LLGA G G+ + +
Sbjct: 10 LLGAHGVGRRHIKN 23
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 27.0 bits (59), Expect = 2.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGSGVPGKR 67
L+G +G GK+ + I+G+RR + + T GS K
Sbjct: 26 LVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKC 70
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 26.6 bits (58), Expect = 2.1
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 17 KKKKYGLLGASGCGKTTLLSCIVGR 41
K K + G G G TT +
Sbjct: 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 26.6 bits (59), Expect = 2.1
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 23 LLGASGCGKTTL 34
L G C K+T+
Sbjct: 6 LEGPDCCFKSTV 17
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein;
HET: GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 26.7 bits (59), Expect = 2.2
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 20 KYGLLGASGCGKTTLLS 36
K LLG S GK++++
Sbjct: 9 KTVLLGESSVGKSSIVL 25
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 26.6 bits (59), Expect = 2.3
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 12 KKKKKKKKKYGLLGASGCGKTTLL 35
++ K G GKTT L
Sbjct: 8 FANREINFKIVYYGPGLSGKTTNL 31
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 26.5 bits (59), Expect = 2.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 20 KYGLLGASGCGKTTLLS 36
K L+G G GKTT +
Sbjct: 17 KLVLVGDGGTGKTTFVK 33
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 26.6 bits (58), Expect = 2.4
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 8 KKKKKKKKKKKKKY-GLLGASGCGKTTLLSCI 38
+K K + + + G G GKTT L+
Sbjct: 9 RKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHF 40
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 26.8 bits (59), Expect = 2.6
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 2 KTNTNTKKKKKKKKKKKKKYGLL-GASGCGKTTLLSCI 38
+ N+ K K + +L G G GKTT +
Sbjct: 60 NSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 97
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 26.4 bits (58), Expect = 2.6
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 23 LLGASGCGKTTLLSCIVGRRRLNTGE 48
+ G SG GKT + + E
Sbjct: 44 VSGTSGTGKTLFSIQFLYNGIIEFDE 69
>2eyu_A Twitching motility protein PILT; pilus retraction motor,
C-terminal domain PILT, protein transport; 1.87A
{Aquifex aeolicus}
Length = 261
Score = 26.4 bits (59), Expect = 2.7
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 18 KKKYGLL---GASGCGKTTLLSCIVGRR 42
+K GL+ G +G GK+T ++ ++
Sbjct: 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 26.7 bits (59), Expect = 2.8
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 25 GASGCGKTTLLSCI 38
G + GKTT L+ I
Sbjct: 267 GETASGKTTTLNAI 280
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 26.3 bits (57), Expect = 2.8
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 16 KKKKKYGLL--GASGCGKTTLLSCIVG 40
++ L+ G SG GK+TL++ +
Sbjct: 4 GSGFEFTLMVVGESGLGKSTLINSLFL 30
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 26.4 bits (59), Expect = 2.8
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 9 KKKKKKKKKKKKYGLL----GASGCGKTTLLSCIVGR 41
K G L SG GK++L+ ++
Sbjct: 3 SDKIHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKT 39
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 26.5 bits (57), Expect = 2.9
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 8 KKKKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTG 47
K ++ + +LG GK+T L+ ++G L +
Sbjct: 59 TIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSD 98
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 26.3 bits (57), Expect = 3.0
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 23 LLGASGCGKTTLLSCIVGR 41
L G S GK+ ++ C+
Sbjct: 8 LNGGSSAGKSGIVRCLQSV 26
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding;
HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 26.2 bits (58), Expect = 3.0
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 23 LLGASGCGKTTLLSCI 38
+G+ G GKT L
Sbjct: 43 FVGSPGVGKTHLAVAT 58
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein,
GTP binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 26.4 bits (59), Expect = 3.1
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 7/25 (28%)
Query: 22 GLLGASGCGKTTLLSCIV----GRR 42
G LGA GKTTLL I+ G +
Sbjct: 11 GFLGA---GKTTLLRHILNEQHGYK 32
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 26.4 bits (59), Expect = 3.2
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 18 KKKYGLL---GASGCGKTTLLSCIVGRR 42
GL+ G +G GK+T L+ ++
Sbjct: 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYL 147
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 26.2 bits (57), Expect = 3.3
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 23 LLGASGCGKTTL 34
L G G GK+T+
Sbjct: 14 LSGHPGSGKSTI 25
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 26.1 bits (57), Expect = 3.4
Identities = 5/10 (50%), Positives = 5/10 (50%)
Query: 25 GASGCGKTTL 34
G G GKT
Sbjct: 12 GPFGVGKTHT 21
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
aeolicus} PDB: 2eww_A* 2gsz_A*
Length = 372
Score = 26.0 bits (58), Expect = 3.5
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 18 KKKYGLL---GASGCGKTTLLSCIVGRR 42
+K GL+ G +G GK+T ++ ++
Sbjct: 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 26.0 bits (57), Expect = 3.5
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 21 YGLLGASGCGKTTLLSCIVGRRRLNTGE 48
L G +G GKTT + + + GE
Sbjct: 33 VLLTGGTGTGKTTFAAQFIYKGAEEYGE 60
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 26.2 bits (57), Expect = 3.5
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 22 GLLGASGCGKTTL---LSCIVGRRRLNT 46
+ G+SG G +T+ I R +
Sbjct: 9 SVTGSSGAGTSTVKHTFDQIFRREGVKA 36
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 26.0 bits (57), Expect = 3.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 2 KTNTNTKKKKKKKKKKKKK 20
+ + KKKKKKKKK+
Sbjct: 89 DGDGDGATGKKKKKKKKKR 107
Score = 26.0 bits (57), Expect = 4.6
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 8 KKKKKKKKKKKKKYG 22
KKKKKKKKK G
Sbjct: 94 GATGKKKKKKKKKRG 108
Score = 25.3 bits (55), Expect = 6.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 2 KTNTNTKKKKKKKKKKKKK 20
+ T KKKKKKKKK+
Sbjct: 91 DGDGATGKKKKKKKKKRGP 109
Score = 25.3 bits (55), Expect = 7.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 2 KTNTNTKKKKKKKKKKKKK 20
KKKKKKKKK+
Sbjct: 90 GDGDGATGKKKKKKKKKRG 108
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2iez_A*
Length = 217
Score = 25.8 bits (57), Expect = 3.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 20 KYGLLGASGCGKTTLLS 36
K LG SG GKTT L
Sbjct: 27 KLLALGDSGVGKTTFLY 43
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 26.3 bits (57), Expect = 3.6
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 11 KKKKKKKKKKYGLL--GASGCGKTTLLSCIVGR 41
+K K+ ++ L+ G SG GK+TL++ +
Sbjct: 22 YRKSVKRGFEFTLMVVGESGLGKSTLINSLFLT 54
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 25.6 bits (57), Expect = 3.6
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 5/20 (25%)
Query: 23 LLGASGCGKTTLLSCIVGRR 42
++GA GCG TT VGR
Sbjct: 7 MVGARGCGMTT-----VGRE 21
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 25.8 bits (57), Expect = 3.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 20 KYGLLGASGCGKTTLLS 36
K ++G +G GKTTLL
Sbjct: 4 KLMIVGNTGSGKTTLLQ 20
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 25.7 bits (57), Expect = 3.7
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 23 LLGASGCGKTTLL 35
L G G GKT
Sbjct: 28 LTGEPGTGKTIFS 40
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 25.9 bits (56), Expect = 3.8
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 9 KKKKKKKKKKKKYGLLGASGCGKTTLL 35
K + K + G GCGKT +
Sbjct: 152 KDGEPHVSSAKVVLVDGVPGCGKTKEI 178
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 25.7 bits (57), Expect = 3.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 20 KYGLLGASGCGKTTLLS 36
K+ LG SG GKT++L
Sbjct: 13 KFLALGDSGVGKTSVLY 29
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB:
2bcj_Q* 2rgn_A* 3ah8_A*
Length = 327
Score = 26.2 bits (57), Expect = 4.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 13 KKKKKKKKYGLLGASGCGKTTLLS 36
+++ K LLG GK+T +
Sbjct: 2 ADARRELKLLLLGTGESGKSTFIK 25
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 25.8 bits (57), Expect = 4.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 25 GASGCGKTTLLSCIV 39
G S GKTTL + +
Sbjct: 29 GLSRSGKTTLANQLS 43
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 25.6 bits (57), Expect = 4.1
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 15 KKKKKKYGLLGASGCGKTTLLSCIVGRR 42
KK L+G G GKT+ VG +
Sbjct: 2 KKNLTNIYLIGLMGAGKTS-----VGSQ 24
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 25.9 bits (57), Expect = 4.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 5 TNTKKKKKKKKKKKKKYGLLGASGCGKTTLL 35
+ + +KK ++G CGKT LL
Sbjct: 12 DLGTENLYFQSMIRKKLVVVGDGACGKTCLL 42
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 25.7 bits (57), Expect = 4.2
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 20 KYGLLGASGCGKTTLLS 36
K+ ++G++G GK+ LL
Sbjct: 27 KFLVIGSAGTGKSCLLH 43
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 25.8 bits (56), Expect = 4.3
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 11 KKKKKKKKKKYGLLGASGCGKTTLL 35
+K LLGA GK+T+
Sbjct: 2 AMGSGIHIRKLLLLGAGESGKSTIF 26
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 25.6 bits (57), Expect = 4.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 20 KYGLLGASGCGKTTLLS 36
K LLG G GK++L++
Sbjct: 9 KVILLGDGGVGKSSLMN 25
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 25.7 bits (56), Expect = 4.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 18 KKKYGLLGASGCGKTTL 34
KK Y + G +G GK+T
Sbjct: 2 KKLYIITGPAGVGKSTT 18
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA
glycosylase, transition state analog, DNA repair; HET:
NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A*
1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Length = 369
Score = 25.7 bits (57), Expect = 4.4
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 8 KKKKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEIW 50
K KK K+ +L A G+ + R+R +TG +
Sbjct: 231 KMKKTAVKQVPLAVAVL-ADDEGRVLI------RKRDSTG-LL 265
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 25.9 bits (56), Expect = 4.5
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 25 GASGCGKTTLLSCIVGRRRLNTGEIWVL 52
GA G GKTT + + I ++
Sbjct: 19 GAYGIGKTTAAEEFLHHFAITPNRILLI 46
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 25.7 bits (57), Expect = 4.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 20 KYGLLGASGCGKTTLLS 36
K L+G G GKTT ++
Sbjct: 13 KICLIGDGGVGKTTYIN 29
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 25.7 bits (57), Expect = 4.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 22 GLLGASGCGKTTLL 35
++GA G GKT L+
Sbjct: 34 NIMGAIGSGKTLLI 47
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 25.6 bits (57), Expect = 4.6
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 4 NTNTKKKKKKKKKKKKKYGLLGASGCGKTTLL 35
+++ ++ + + +LG G GK+ L
Sbjct: 7 HSSGRENLYFQGPLEVNLAILGRRGAGKSALT 38
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 25.7 bits (57), Expect = 4.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 22 GLLGASGCGKTTLLSCIV 39
G+ G + GKTTL +
Sbjct: 10 GIAGGTASGKTTLAQALA 27
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 25.7 bits (57), Expect = 4.8
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 22 GLLGASGCGKTTLL 35
+GA G GKT L+
Sbjct: 42 DFMGAIGSGKTLLI 55
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 25.5 bits (56), Expect = 4.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 14 KKKKKKKYGLLGASGCGKTTLL 35
+ K K ++G S CGKT LL
Sbjct: 24 NQNVKCKIVVVGDSQCGKTALL 45
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 25.2 bits (56), Expect = 5.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 20 KYGLLGASGCGKTTLLS 36
K +LG SG GKT+L+
Sbjct: 10 KVIILGDSGVGKTSLMH 26
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 25.2 bits (56), Expect = 5.2
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 20 KYGLLGASGCGKTTLLS 36
K+ ++G +G GK+ LL
Sbjct: 12 KFLVIGNAGTGKSCLLH 28
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 25.6 bits (57), Expect = 5.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 100 EIDDRLQFLLN 110
EI RL FLL+
Sbjct: 497 EIRSRLGFLLD 507
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 25.3 bits (56), Expect = 5.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 20 KYGLLGASGCGKTTLLS 36
K +LG SG GKT+L++
Sbjct: 10 KVIILGDSGVGKTSLMN 26
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 25.2 bits (56), Expect = 5.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 20 KYGLLGASGCGKTTLLS 36
K +LG GKT+L +
Sbjct: 8 KIVVLGDGASGKTSLTT 24
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction,
structural genomics, structural genomics consortium,
SGC, protein transport; HET: GDP; 1.50A {Homo sapiens}
SCOP: c.37.1.8 PDB: 1z0a_A*
Length = 191
Score = 25.2 bits (56), Expect = 5.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 20 KYGLLGASGCGKTTLLS 36
KY ++G +G GK+ LL
Sbjct: 23 KYIIIGDTGVGKSCLLL 39
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 25.6 bits (57), Expect = 5.7
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 100 EIDDRLQFLLN 110
EI DRL FL N
Sbjct: 178 EIRDRLGFLQN 188
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 25.2 bits (56), Expect = 6.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 20 KYGLLGASGCGKTTLLS 36
KY ++G G GK+ LL
Sbjct: 17 KYIIIGDMGVGKSCLLH 33
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 25.6 bits (57), Expect = 6.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 100 EIDDRLQFLLN 110
EI DRL FL N
Sbjct: 480 EIRDRLGFLQN 490
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 25.4 bits (55), Expect = 6.1
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 23 LLGASGCGKTTLLSCI 38
L+G CGK+++ +
Sbjct: 4 LMGVRRCGKSSICKVV 19
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 25.4 bits (56), Expect = 6.1
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 23 LLGASGCGKTTLL 35
L G G GKT
Sbjct: 28 LSGGPGTGKTIFS 40
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 25.3 bits (56), Expect = 6.3
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 9 KKKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI 49
+ + ++ K ++G GKTT+L + + E+
Sbjct: 7 RIWRLFNHQEHKVIIVGLDNAGKTTIL------YQFSMNEV 41
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 25.3 bits (56), Expect = 6.3
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 20 KYGLLGASGCGKTTLLS 36
+ ++G+ G GKT+L+
Sbjct: 28 QVIIIGSRGVGKTSLME 44
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 25.2 bits (56), Expect = 6.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 25 GASGCGKTTLLSCIVGR 41
G SG GK+TLL +
Sbjct: 11 GPSGAGKSTLLKKLFQE 27
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 24.9 bits (55), Expect = 6.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 20 KYGLLGASGCGKTTLLS 36
K L+G SG GK+ LLS
Sbjct: 7 KVVLIGDSGVGKSNLLS 23
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 24.9 bits (55), Expect = 6.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 20 KYGLLGASGCGKTTLLS 36
K ++G S GKT+ L
Sbjct: 25 KLLIIGNSSVGKTSFLF 41
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 24.9 bits (55), Expect = 6.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 20 KYGLLGASGCGKTTLLS 36
K ++G S GKT+ L
Sbjct: 10 KILIIGNSSVGKTSFLF 26
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 24.8 bits (55), Expect = 6.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 20 KYGLLGASGCGKTTLLS 36
K L+G SG GK+ LL
Sbjct: 5 KILLIGDSGVGKSCLLV 21
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 24.9 bits (55), Expect = 7.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 20 KYGLLGASGCGKTTLLS 36
K L+G SG GK+ LLS
Sbjct: 31 KVVLIGDSGVGKSNLLS 47
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 25.5 bits (57), Expect = 7.0
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 100 EIDDRLQFLLN 110
EI+ RL+FL++
Sbjct: 440 EIEKRLEFLVD 450
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 24.9 bits (55), Expect = 7.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 20 KYGLLGASGCGKTTLLS 36
K L+G S GKT+ L
Sbjct: 24 KLLLIGNSSVGKTSFLF 40
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 24.9 bits (55), Expect = 7.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 20 KYGLLGASGCGKTTLLS 36
K L+G + GKT ++
Sbjct: 31 KLVLVGDASVGKTCVVQ 47
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport,
transmembrane; HET: GDP; 2.20A {Methanocaldococcus
jannaschii}
Length = 188
Score = 24.8 bits (55), Expect = 7.2
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 13 KKKKKKKKYGLLGASGCGKTTLLSCIVGRR 42
K + L+G GK+T+ + + G
Sbjct: 2 GSHMKSYEIALIGNPNVGKSTIFNALTGEN 31
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 24.6 bits (54), Expect = 7.4
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 10/40 (25%)
Query: 22 GLLGASGCGKTTLLSCIVGRRRLNTGEIWVLGGKPGTKGS 61
++G +G GK++LL I+ L K
Sbjct: 27 LIIGQNGSGKSSLLDAIL----------VGLYWPLRIKDI 56
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 201
Score = 24.9 bits (55), Expect = 7.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 20 KYGLLGASGCGKTTLLS 36
K L+G +G GKT L+
Sbjct: 28 KIVLIGNAGVGKTCLVR 44
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 24.2 bits (53), Expect = 7.4
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 1 MKTNTNTKKKKKKKKKKKKKY 21
M T KK+ +++ +K
Sbjct: 1 MSTKNAKPKKEAQRRPSRKAK 21
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 24.9 bits (55), Expect = 7.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 20 KYGLLGASGCGKTTLLS 36
K L+G SG GKT LLS
Sbjct: 27 KVVLIGESGVGKTNLLS 43
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 25.0 bits (54), Expect = 7.7
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 23 LLGASGCGKTTL 34
+G G GK+T
Sbjct: 7 TIGCPGSGKSTW 18
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 24.8 bits (55), Expect = 7.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 20 KYGLLGASGCGKTTLLS 36
K L+G SG GKT +L
Sbjct: 10 KLLLIGDSGVGKTCVLF 26
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small
GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga
maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 24.9 bits (55), Expect = 7.8
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 15 KKKKKKYGLLGASGCGKTTLLSCIVGRR 42
K L G GKT+L + + G +
Sbjct: 2 PLHMVKVALAGCPNVGKTSLFNALTGTK 29
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 24.9 bits (55), Expect = 7.8
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 8/26 (30%)
Query: 23 LLGASGCGKTTLLSCIVGRR---RLN 45
L+G G GK+T +GRR L
Sbjct: 7 LVGLPGSGKST-----IGRRLAKALG 27
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 24.8 bits (55), Expect = 8.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 20 KYGLLGASGCGKTTLLS 36
K L+G SG GKT LL
Sbjct: 12 KVMLVGDSGVGKTCLLV 28
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 24.9 bits (55), Expect = 8.0
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 20 KYGLLGASGCGKTTLLS 36
K ++G S GKT L
Sbjct: 22 KIIVIGDSNVGKTCLTY 38
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 24.8 bits (55), Expect = 8.1
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 1 MKTNTNTKKKKKKKKKKKKKYGLL----GASGCGKTTLLSCIVGR 41
+ +TK + + G + G S GK+T++ C+ R
Sbjct: 2 VGEGPDTKPTARGQPAAV---GRVVVLSGPSAVGKSTVVRCLRER 43
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 24.9 bits (55), Expect = 8.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 20 KYGLLGASGCGKTTLLS 36
K L+G SG GK+TL
Sbjct: 25 KVMLVGESGVGKSTLAG 41
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 24.9 bits (55), Expect = 8.3
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 20 KYGLLGASGCGKTTLLS 36
K ++G + GK+ L+S
Sbjct: 22 KVAVVGEATVGKSALIS 38
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 24.8 bits (54), Expect = 8.5
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 9 KKKKKKKKKKKKYGLLGASGCGKTTLLSC 37
K ++G GKT LL
Sbjct: 9 SMAHGPGALMLKCVVVGDGAVGKTCLLMS 37
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 24.8 bits (55), Expect = 8.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 20 KYGLLGASGCGKTTLLS 36
K ++G SG GK++LL
Sbjct: 11 KLLIIGDSGVGKSSLLL 27
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 24.7 bits (54), Expect = 8.6
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 25 GASGCGKTTL 34
G G GK+T
Sbjct: 9 GCPGSGKSTW 18
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 24.9 bits (55), Expect = 8.7
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 9 KKKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI 49
+K K ++ + LLG GKTTLL ++L + +I
Sbjct: 7 RKLKSAPDQEVRILLLGLDNAGKTTLL------KQLASEDI 41
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 25.0 bits (55), Expect = 8.8
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 9/36 (25%)
Query: 7 TKKKKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRR 42
+ + KK G+LGA+G VG+R
Sbjct: 8 SGLVPRGSHMSVKKAGVLGATG---------SVGQR 34
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 24.8 bits (55), Expect = 9.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 20 KYGLLGASGCGKTTLLS 36
K LLG GKT+L+
Sbjct: 8 KVVLLGEGCVGKTSLVL 24
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 24.5 bits (54), Expect = 9.1
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 7 TKKKKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI 49
T KK K+K+++ + +LG GKTT+L ++ N ++
Sbjct: 7 TILKKMKQKERELRLLMLGLDNAGKTTIL------KKFNGEDV 43
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 24.7 bits (54), Expect = 9.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 20 KYGLLGASGCGKTTLLS 36
K L+G SG GK+ LLS
Sbjct: 15 KIVLIGDSGVGKSNLLS 31
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 24.7 bits (53), Expect = 9.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 19 KKYGLLGASGCGKTTLL 35
+ L G G GKTTL+
Sbjct: 2 RHVFLTGPPGVGKTTLI 18
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 24.8 bits (55), Expect = 9.6
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 25 GASGCGKTTL 34
G +G GKTT+
Sbjct: 388 GPTGSGKTTI 397
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 24.8 bits (54), Expect = 9.6
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 20 KYGLLGASGCGKTTLLS 36
K LLG + GK++++
Sbjct: 5 KLVLLGEAAVGKSSIVL 21
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 24.4 bits (54), Expect = 9.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 20 KYGLLGASGCGKTTLLS 36
K LLG G GK++L+
Sbjct: 14 KLVLLGDVGAGKSSLVL 30
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 24.8 bits (54), Expect = 9.9
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 9 KKKKKKKKKKKKYGLLGASGCGKTTLLSCIVGRRRLNTGEI 49
K K+K +LG G GK++ ++ ++G + +
Sbjct: 27 GKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPF 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.415
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,930,061
Number of extensions: 110446
Number of successful extensions: 1180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1129
Number of HSP's successfully gapped: 300
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)