Query psy3400
Match_columns 417
No_of_seqs 350 out of 1645
Neff 5.0
Searched_HMMs 29240
Date Sat Aug 17 00:04:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xsd_C POU domain, class 3, tr 100.0 3.9E-47 1.3E-51 345.6 8.0 157 203-359 5-161 (164)
2 3l1p_A POU domain, class 5, tr 100.0 1.1E-45 3.9E-50 332.7 4.3 146 208-355 7-154 (155)
3 1au7_A Protein PIT-1, GHF-1; c 100.0 1.1E-44 3.8E-49 323.5 8.3 146 209-356 1-146 (146)
4 3d1n_I POU domain, class 6, tr 100.0 1.2E-42 4E-47 311.2 7.8 147 208-354 1-150 (151)
5 1e3o_C Octamer-binding transcr 100.0 3.6E-42 1.2E-46 311.2 8.2 152 205-356 1-160 (160)
6 1ic8_A Hepatocyte nuclear fact 99.8 6.2E-22 2.1E-26 184.6 2.8 137 210-354 25-193 (194)
7 2dms_A Homeobox protein OTX2; 99.8 4.2E-19 1.4E-23 142.5 5.3 68 295-362 5-72 (80)
8 2kt0_A Nanog, homeobox protein 99.7 3.3E-19 1.1E-23 144.0 3.7 65 294-358 19-83 (84)
9 2cra_A Homeobox protein HOX-B1 99.7 4.7E-19 1.6E-23 138.8 3.9 64 295-358 5-68 (70)
10 2dmt_A Homeobox protein BARH-l 99.7 5E-19 1.7E-23 142.2 4.0 65 294-358 14-78 (80)
11 2dmq_A LIM/homeobox protein LH 99.7 5.9E-19 2E-23 141.3 3.7 68 295-362 5-72 (80)
12 2da1_A Alpha-fetoprotein enhan 99.7 6.5E-19 2.2E-23 137.7 3.5 64 295-358 5-68 (70)
13 2da2_A Alpha-fetoprotein enhan 99.7 8.5E-19 2.9E-23 137.1 4.2 64 295-358 5-68 (70)
14 2da3_A Alpha-fetoprotein enhan 99.7 7.6E-19 2.6E-23 140.4 3.8 65 294-358 14-78 (80)
15 2dmu_A Homeobox protein goosec 99.7 8E-19 2.7E-23 137.4 3.8 64 295-358 5-68 (70)
16 2djn_A Homeobox protein DLX-5; 99.7 1.1E-18 3.6E-23 136.8 4.5 64 295-358 5-68 (70)
17 2d5v_A Hepatocyte nuclear fact 99.7 3.1E-19 1E-23 161.0 1.6 141 214-359 7-159 (164)
18 2vi6_A Homeobox protein nanog; 99.7 5.5E-19 1.9E-23 135.2 2.7 60 296-355 2-61 (62)
19 2da4_A Hypothetical protein DK 99.7 9.1E-19 3.1E-23 140.5 3.4 65 294-358 5-73 (80)
20 1ahd_P Antennapedia protein mu 99.7 9.5E-19 3.3E-23 136.6 3.3 63 297-359 2-64 (68)
21 2l7z_A Homeobox protein HOX-A1 99.7 1.9E-18 6.6E-23 136.6 4.9 65 295-359 5-69 (73)
22 2h1k_A IPF-1, pancreatic and d 99.7 9.1E-19 3.1E-23 134.6 2.8 61 296-356 2-62 (63)
23 2hdd_A Protein (engrailed home 99.7 8.9E-19 3E-23 133.7 2.6 58 297-354 3-60 (61)
24 1ig7_A Homeotic protein MSX-1; 99.7 1.2E-18 3.9E-23 131.5 3.2 58 298-355 1-58 (58)
25 1yz8_P Pituitary homeobox 2; D 99.7 9.6E-19 3.3E-23 136.3 2.7 64 296-359 2-65 (68)
26 2h8r_A Hepatocyte nuclear fact 99.7 1.5E-18 5.3E-23 164.3 4.5 134 212-353 28-219 (221)
27 1bw5_A ISL-1HD, insulin gene e 99.7 1.6E-18 5.4E-23 134.2 3.4 62 296-357 2-63 (66)
28 2cue_A Paired box protein PAX6 99.7 2E-18 6.8E-23 138.7 4.1 64 295-358 5-68 (80)
29 1nk2_P Homeobox protein VND; h 99.7 1.1E-18 3.9E-23 139.2 2.3 66 294-359 6-71 (77)
30 2e1o_A Homeobox protein PRH; D 99.7 2.3E-18 7.9E-23 134.9 3.9 64 295-358 5-68 (70)
31 1zq3_P PRD-4, homeotic bicoid 99.7 2.1E-18 7.2E-23 134.5 3.6 63 297-359 2-64 (68)
32 2r5y_A Homeotic protein sex co 99.7 2.4E-18 8.3E-23 140.5 4.1 64 294-357 25-88 (88)
33 1ftt_A TTF-1 HD, thyroid trans 99.7 2.3E-18 7.8E-23 134.3 3.7 63 297-359 2-64 (68)
34 2m0c_A Homeobox protein arista 99.7 2.7E-18 9.1E-23 135.5 3.8 65 294-358 6-70 (75)
35 1wh5_A ZF-HD homeobox family p 99.7 1.7E-18 5.8E-23 139.9 2.7 62 294-355 14-79 (80)
36 1b8i_A Ultrabithorax, protein 99.7 2.1E-18 7.1E-23 139.1 2.8 63 295-357 18-80 (81)
37 2k40_A Homeobox expressed in E 99.7 5.7E-18 1.9E-22 131.5 5.0 62 298-359 2-63 (67)
38 3rkq_A Homeobox protein NKX-2. 99.7 4.5E-18 1.5E-22 127.6 4.0 57 297-353 2-58 (58)
39 1uhs_A HOP, homeodomain only p 99.7 6E-18 2E-22 133.2 4.4 62 298-359 2-64 (72)
40 1jgg_A Segmentation protein EV 99.7 3.4E-18 1.2E-22 130.0 2.9 58 298-355 2-59 (60)
41 1puf_A HOX-1.7, homeobox prote 99.7 3.6E-18 1.2E-22 136.2 3.1 64 294-357 10-73 (77)
42 3a01_A Homeodomain-containing 99.7 3.4E-18 1.2E-22 141.5 2.9 66 294-359 14-79 (93)
43 1akh_A Protein (mating-type pr 99.7 2.7E-18 9.4E-23 130.6 2.1 59 295-353 3-61 (61)
44 1fjl_A Paired protein; DNA-bin 99.7 3.9E-18 1.3E-22 137.2 3.1 63 294-356 15-77 (81)
45 1b72_A Protein (homeobox prote 99.7 2.9E-18 9.8E-23 142.6 2.4 64 295-358 32-95 (97)
46 2hi3_A Homeodomain-only protei 99.7 6.7E-18 2.3E-22 133.4 4.4 62 298-359 3-65 (73)
47 1wh7_A ZF-HD homeobox family p 99.7 3.6E-18 1.2E-22 138.3 2.1 61 294-355 14-79 (80)
48 2dn0_A Zinc fingers and homeob 99.7 9.7E-18 3.3E-22 133.4 4.2 63 297-359 8-70 (76)
49 2da5_A Zinc fingers and homeob 99.7 1.3E-17 4.5E-22 132.6 4.2 61 299-359 9-69 (75)
50 3a02_A Homeobox protein arista 99.7 8.2E-18 2.8E-22 127.9 2.3 58 300-357 2-59 (60)
51 2ly9_A Zinc fingers and homeob 99.7 2E-17 6.9E-22 130.5 4.3 63 297-359 6-68 (74)
52 1du6_A PBX1, homeobox protein 99.7 2E-17 6.7E-22 127.2 3.8 60 296-355 2-64 (64)
53 2cuf_A FLJ21616 protein; homeo 99.7 1.6E-17 5.3E-22 137.7 2.8 65 295-359 5-84 (95)
54 1puf_B PRE-B-cell leukemia tra 99.7 3.5E-17 1.2E-21 129.0 4.6 62 298-359 2-66 (73)
55 2ecc_A Homeobox and leucine zi 99.7 2.2E-17 7.4E-22 132.9 3.4 61 299-359 5-65 (76)
56 3a03_A T-cell leukemia homeobo 99.7 1.5E-17 5.2E-22 125.0 2.3 55 302-356 2-56 (56)
57 1x2n_A Homeobox protein pknox1 99.7 3.1E-17 1.1E-21 129.3 4.0 64 295-358 5-71 (73)
58 3nar_A ZHX1, zinc fingers and 99.7 2.2E-17 7.6E-22 137.1 3.1 63 294-356 22-84 (96)
59 2ecb_A Zinc fingers and homeob 99.6 1.1E-16 3.8E-21 132.2 5.8 58 303-360 17-74 (89)
60 1b72_B Protein (PBX1); homeodo 99.6 4.3E-17 1.5E-21 132.4 3.2 62 298-359 2-66 (87)
61 2dmn_A Homeobox protein TGIF2L 99.6 7.4E-17 2.5E-21 130.8 4.5 68 295-362 5-75 (83)
62 2da6_A Hepatocyte nuclear fact 99.6 8.4E-17 2.9E-21 136.1 4.0 65 294-358 3-88 (102)
63 1k61_A Mating-type protein alp 99.6 6.8E-17 2.3E-21 122.7 3.0 57 300-356 1-60 (60)
64 2cqx_A LAG1 longevity assuranc 99.6 7.8E-17 2.7E-21 127.7 2.9 60 298-357 9-69 (72)
65 1mnm_C Protein (MAT alpha-2 tr 99.6 8.4E-17 2.9E-21 131.1 3.1 61 294-354 24-87 (87)
66 1lfb_A Liver transcription fac 99.6 1.1E-16 3.9E-21 134.4 3.4 66 293-358 5-91 (99)
67 2l9r_A Homeobox protein NKX-3. 99.6 1.7E-16 5.8E-21 125.2 3.4 59 302-360 9-67 (69)
68 2dmp_A Zinc fingers and homeob 99.6 3.5E-16 1.2E-20 128.5 5.2 60 302-361 18-77 (89)
69 1le8_B Mating-type protein alp 99.6 1.8E-16 6.2E-21 128.3 3.4 62 297-358 2-66 (83)
70 1wi3_A DNA-binding protein SAT 99.6 2.8E-16 9.6E-21 123.8 3.1 61 294-354 4-65 (71)
71 2e19_A Transcription factor 8; 99.6 4.6E-16 1.6E-20 120.7 3.9 57 300-356 6-62 (64)
72 3nau_A Zinc fingers and homeob 99.6 3.5E-16 1.2E-20 122.6 2.1 51 305-355 12-62 (66)
73 1x2m_A LAG1 longevity assuranc 99.6 5.8E-16 2E-20 120.7 3.3 53 306-358 9-62 (64)
74 3k2a_A Homeobox protein MEIS2; 99.5 1.8E-14 6.2E-19 112.4 3.2 57 303-359 4-63 (67)
75 2da7_A Zinc finger homeobox pr 99.4 3.1E-14 1.1E-18 112.6 2.1 48 306-353 14-61 (71)
76 2lk2_A Homeobox protein TGIF1; 99.2 2E-12 6.7E-17 106.9 1.7 57 302-358 10-69 (89)
77 1mh3_A Maltose binding-A1 home 99.2 1E-12 3.5E-17 130.1 -0.4 56 298-353 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.4 6E-08 2.1E-12 67.8 0.8 21 339-359 1-21 (37)
79 4ich_A Transcriptional regulat 96.2 0.00056 1.9E-08 65.2 -0.8 131 213-350 28-166 (311)
80 4ghj_A Probable transcriptiona 95.6 0.0076 2.6E-07 50.0 3.4 53 205-263 26-78 (101)
81 3g5g_A Regulatory protein; tra 93.6 0.043 1.5E-06 44.6 3.2 52 209-266 22-75 (99)
82 3f6w_A XRE-family like protein 93.5 0.059 2E-06 41.2 3.7 43 210-258 9-51 (83)
83 2ef8_A C.ECOT38IS, putative tr 93.4 0.09 3.1E-06 40.0 4.6 45 209-259 4-48 (84)
84 3eus_A DNA-binding protein; st 93.3 0.048 1.6E-06 42.7 2.9 44 210-259 9-52 (86)
85 3s8q_A R-M controller protein; 93.1 0.06 2E-06 41.2 3.2 50 211-266 7-58 (82)
86 1y7y_A C.AHDI; helix-turn-heli 93.1 0.049 1.7E-06 40.4 2.6 44 209-258 7-50 (74)
87 2ewt_A BLDD, putative DNA-bind 92.6 0.1 3.5E-06 38.4 3.8 45 210-258 3-47 (71)
88 3vk0_A NHTF, transcriptional r 92.3 0.11 3.8E-06 42.7 4.0 42 211-258 17-58 (114)
89 2kpj_A SOS-response transcript 92.2 0.14 4.9E-06 40.4 4.4 43 211-259 5-47 (94)
90 3qq6_A HTH-type transcriptiona 92.2 0.079 2.7E-06 40.8 2.8 47 215-267 10-59 (78)
91 3kz3_A Repressor protein CI; f 92.2 0.087 3E-06 40.3 3.0 44 210-259 7-50 (80)
92 2wiu_B HTH-type transcriptiona 91.8 0.068 2.3E-06 41.1 2.0 42 211-258 8-49 (88)
93 2a6c_A Helix-turn-helix motif; 91.3 0.19 6.6E-06 38.8 4.1 44 209-258 12-55 (83)
94 2ys9_A Homeobox and leucine zi 91.2 0.05 1.7E-06 42.8 0.7 45 304-348 13-57 (70)
95 2b5a_A C.BCLI; helix-turn-heli 91.1 0.16 5.5E-06 37.9 3.4 42 211-258 6-47 (77)
96 3b7h_A Prophage LP1 protein 11 90.9 0.16 5.5E-06 38.0 3.2 41 213-259 5-45 (78)
97 2wus_R RODZ, putative uncharac 90.5 0.14 4.7E-06 42.9 2.8 43 211-259 3-45 (112)
98 2k27_A Paired box protein PAX- 90.5 0.27 9.4E-06 42.4 4.8 48 301-348 81-135 (159)
99 1lmb_3 Protein (lambda repress 89.7 0.28 9.5E-06 38.1 3.8 42 211-258 13-54 (92)
100 2o38_A Hypothetical protein; a 89.6 0.24 8.3E-06 41.8 3.6 41 213-259 38-78 (120)
101 2r1j_L Repressor protein C2; p 89.2 0.076 2.6E-06 38.5 0.1 39 214-258 4-42 (68)
102 1zug_A Phage 434 CRO protein; 89.0 0.17 5.8E-06 37.0 1.9 39 215-259 3-41 (71)
103 3ivp_A Putative transposon-rel 88.8 0.18 6E-06 41.9 2.1 42 211-258 8-49 (126)
104 1b0n_A Protein (SINR protein); 88.7 0.61 2.1E-05 37.2 5.3 36 216-257 2-37 (111)
105 3fmy_A HTH-type transcriptiona 88.7 0.2 6.7E-06 38.1 2.2 37 217-259 13-49 (73)
106 2k9q_A Uncharacterized protein 88.5 0.22 7.5E-06 37.6 2.3 38 216-259 3-40 (77)
107 1r69_A Repressor protein CI; g 88.3 0.2 6.9E-06 36.4 1.9 38 216-259 2-39 (69)
108 2ppx_A AGR_C_3184P, uncharacte 88.1 0.15 5.1E-06 40.8 1.2 39 215-259 30-68 (99)
109 1x57_A Endothelial differentia 87.9 0.3 1E-05 38.0 2.9 38 215-258 13-50 (91)
110 3f52_A CLP gene regulator (CLG 87.7 0.34 1.2E-05 39.6 3.2 50 211-266 24-75 (117)
111 1adr_A P22 C2 repressor; trans 87.4 0.24 8.3E-06 36.7 1.9 39 214-258 4-42 (76)
112 1y9q_A Transcriptional regulat 86.9 0.39 1.3E-05 42.5 3.3 50 211-266 7-58 (192)
113 2jvl_A TRMBF1; coactivator, he 86.3 0.29 1E-05 40.0 2.0 41 212-258 31-73 (107)
114 3t76_A VANU, transcriptional r 86.1 0.15 5E-06 41.0 0.1 37 216-258 25-61 (88)
115 2bnm_A Epoxidase; oxidoreducta 86.0 0.43 1.5E-05 42.3 3.1 44 210-259 5-48 (198)
116 1jhg_A Trp operon repressor; c 85.9 0.51 1.7E-05 39.5 3.3 61 206-278 34-96 (101)
117 3op9_A PLI0006 protein; struct 85.7 0.44 1.5E-05 38.7 2.7 38 215-258 9-46 (114)
118 2elh_A CG11849-PA, LD40883P; s 85.3 0.63 2.2E-05 36.7 3.5 48 296-348 15-62 (87)
119 3mlf_A Transcriptional regulat 84.0 0.071 2.4E-06 44.1 -2.8 39 214-258 22-60 (111)
120 2l49_A C protein; P2 bacteriop 83.4 0.41 1.4E-05 37.6 1.6 37 216-258 5-41 (99)
121 3fym_A Putative uncharacterize 83.4 0.3 1E-05 41.6 0.8 40 214-259 2-41 (130)
122 3o9x_A Uncharacterized HTH-typ 82.6 0.81 2.8E-05 38.3 3.2 35 219-259 75-109 (133)
123 3lfp_A CSP231I C protein; tran 82.6 0.54 1.8E-05 37.3 1.9 37 216-258 2-42 (98)
124 3kxa_A NGO0477 protein, putati 82.1 0.35 1.2E-05 41.8 0.8 48 213-266 66-115 (141)
125 1pdn_C Protein (PRD paired); p 81.2 1.2 4.1E-05 35.7 3.6 46 302-347 74-126 (128)
126 1hlv_A CENP-B, major centromer 80.5 0.77 2.6E-05 38.1 2.3 49 299-350 3-51 (131)
127 3cec_A Putative antidote prote 80.5 0.99 3.4E-05 36.0 2.8 38 215-258 18-55 (104)
128 3omt_A Uncharacterized protein 79.6 0.88 3E-05 33.8 2.1 36 217-258 10-45 (73)
129 2xi8_A Putative transcription 76.7 0.26 8.8E-06 35.4 -1.6 35 218-258 4-38 (66)
130 2l1p_A DNA-binding protein SAT 76.4 1.8 6E-05 35.1 3.1 55 221-281 25-79 (83)
131 2glo_A Brinker CG9653-PA; prot 76.4 0.74 2.5E-05 33.6 0.8 48 301-349 3-50 (59)
132 2eby_A Putative HTH-type trans 74.8 1.5 5.2E-05 35.3 2.4 37 216-258 11-48 (113)
133 1wiz_A DNA-binding protein SAT 74.6 0.92 3.1E-05 38.0 1.0 69 204-280 15-85 (101)
134 1iuf_A Centromere ABP1 protein 74.4 3.2 0.00011 35.7 4.5 53 298-350 6-62 (144)
135 2rgt_A Fusion of LIM/homeobox 74.1 0.36 1.2E-05 42.6 -1.7 31 295-325 134-164 (169)
136 2qfc_A PLCR protein; TPR, HTH, 74.0 1 3.6E-05 41.2 1.4 39 214-259 4-42 (293)
137 3u3w_A Transcriptional activat 74.0 1.3 4.6E-05 40.5 2.1 39 214-259 4-42 (293)
138 2ofy_A Putative XRE-family tra 74.0 2.2 7.6E-05 32.4 3.1 42 210-259 11-52 (86)
139 1u78_A TC3 transposase, transp 73.8 4.4 0.00015 33.2 5.1 44 303-350 60-105 (141)
140 1jko_C HIN recombinase, DNA-in 73.3 0.94 3.2E-05 30.8 0.7 42 304-350 6-47 (52)
141 2ict_A Antitoxin HIGA; helix-t 72.2 2 6.8E-05 33.5 2.4 37 216-258 9-45 (94)
142 2auw_A Hypothetical protein NE 71.9 1.4 4.7E-05 40.0 1.6 45 208-258 74-127 (170)
143 3bs3_A Putative DNA-binding pr 71.8 0.49 1.7E-05 35.1 -1.2 37 216-258 11-47 (76)
144 3bdn_A Lambda repressor; repre 71.8 2.3 8E-05 38.5 3.2 40 213-258 15-54 (236)
145 1k78_A Paired box protein PAX5 70.3 2.1 7.2E-05 36.1 2.4 48 301-348 88-142 (149)
146 1x2l_A CUT-like 2, homeobox pr 69.9 1.6 5.4E-05 36.6 1.4 65 204-279 14-84 (101)
147 2o8x_A Probable RNA polymerase 69.7 1.6 5.4E-05 31.9 1.3 50 303-357 15-64 (70)
148 3c57_A Two component transcrip 69.4 2.4 8.2E-05 33.8 2.4 51 303-359 27-77 (95)
149 3trb_A Virulence-associated pr 69.1 2.8 9.7E-05 34.2 2.8 45 217-267 15-62 (104)
150 3hug_A RNA polymerase sigma fa 68.8 2 6.7E-05 33.8 1.7 48 304-356 38-85 (92)
151 3pxp_A Helix-turn-helix domain 67.6 1.9 6.4E-05 42.0 1.6 40 213-258 4-49 (292)
152 1tc3_C Protein (TC3 transposas 65.8 2.2 7.4E-05 28.3 1.2 40 303-347 5-44 (51)
153 1je8_A Nitrate/nitrite respons 65.7 3.6 0.00012 31.9 2.6 49 301-355 19-67 (82)
154 2p5t_A Putative transcriptiona 65.0 1.3 4.6E-05 38.2 0.0 37 216-258 2-38 (158)
155 2p7v_B Sigma-70, RNA polymeras 63.0 5.3 0.00018 29.4 3.0 54 303-357 5-58 (68)
156 1wh6_A CUT-like 2, homeobox pr 62.7 2 6.9E-05 35.9 0.7 65 213-284 19-89 (101)
157 3bd1_A CRO protein; transcript 62.3 2.6 9E-05 31.8 1.2 33 219-258 3-35 (79)
158 1p4w_A RCSB; solution structur 61.8 3.9 0.00013 33.3 2.2 47 301-353 32-78 (99)
159 1x3u_A Transcriptional regulat 61.8 4.6 0.00016 30.2 2.5 46 304-355 17-62 (79)
160 2awi_A PRGX; repressor, pherom 59.0 3.6 0.00012 39.6 1.8 37 216-259 4-40 (317)
161 1fse_A GERE; helix-turn-helix 58.1 5.4 0.00018 29.2 2.3 48 301-354 9-56 (74)
162 2rnj_A Response regulator prot 57.7 3.8 0.00013 32.1 1.5 49 301-355 27-75 (91)
163 8tfv_A Protein (thanatin); bac 55.9 2.7 9.2E-05 25.1 0.2 15 337-351 2-16 (21)
164 2jn6_A Protein CGL2762, transp 53.4 5.5 0.00019 31.3 1.8 43 301-346 3-45 (97)
165 1ku3_A Sigma factor SIGA; heli 52.0 8.9 0.0003 28.6 2.7 50 303-353 10-59 (73)
166 2o4a_A DNA-binding protein SAT 51.8 2 6.9E-05 35.4 -1.1 70 205-281 5-76 (93)
167 3mzy_A RNA polymerase sigma-H 50.8 7.9 0.00027 31.9 2.4 48 303-356 109-156 (164)
168 1tty_A Sigma-A, RNA polymerase 47.9 10 0.00035 29.4 2.5 52 304-356 19-70 (87)
169 2lfw_A PHYR sigma-like domain; 44.4 10 0.00035 32.2 2.2 52 303-359 93-144 (157)
170 1s7o_A Hypothetical UPF0122 pr 42.1 7.5 0.00025 32.3 0.9 47 304-355 23-69 (113)
171 3r1f_A ESX-1 secretion-associa 41.7 16 0.00054 31.2 2.9 52 215-267 7-67 (135)
172 2jpc_A SSRB; DNA binding prote 41.6 8.1 0.00028 27.4 0.9 28 328-355 17-44 (61)
173 3ulq_B Transcriptional regulat 40.0 15 0.00053 29.0 2.4 49 299-353 25-73 (90)
174 1or7_A Sigma-24, RNA polymeras 39.9 9.5 0.00033 32.7 1.3 49 304-357 141-189 (194)
175 1wh8_A CUT-like 2, homeobox pr 39.2 5.3 0.00018 33.9 -0.5 23 214-236 30-52 (111)
176 1rp3_A RNA polymerase sigma fa 38.9 8.4 0.00029 34.0 0.8 48 304-356 188-235 (239)
177 1xsv_A Hypothetical UPF0122 pr 38.0 13 0.00046 30.5 1.9 47 304-355 26-72 (113)
178 2q24_A Putative TETR family tr 37.4 6.8 0.00023 33.2 -0.1 41 308-350 20-60 (194)
179 3frw_A Putative Trp repressor 35.7 13 0.00045 31.3 1.4 44 205-254 34-78 (107)
180 2q0o_A Probable transcriptiona 35.7 17 0.0006 32.9 2.4 48 301-354 173-220 (236)
181 2lv7_A Calcium-binding protein 35.2 43 0.0015 26.5 4.4 47 300-346 26-79 (100)
182 3clo_A Transcriptional regulat 34.5 20 0.00067 33.2 2.6 48 302-355 196-243 (258)
183 3qwg_A ESX-1 secretion-associa 34.4 22 0.00075 29.9 2.6 43 215-258 5-53 (123)
184 3ga4_A Dolichyl-diphosphooligo 33.5 11 0.00036 34.1 0.5 19 84-102 159-177 (178)
185 2qko_A Possible transcriptiona 33.4 16 0.00054 31.4 1.6 41 309-350 34-74 (215)
186 4fqn_A Malcavernin; helical do 33.1 30 0.001 28.7 3.1 38 206-245 27-64 (98)
187 2x48_A CAG38821; archeal virus 32.9 15 0.0005 25.6 1.1 36 306-346 18-53 (55)
188 1jhf_A LEXA repressor; LEXA SO 32.7 23 0.00079 31.3 2.6 38 212-254 7-46 (202)
189 2v57_A TETR family transcripti 32.0 12 0.00041 31.3 0.6 38 309-349 20-57 (190)
190 1l3l_A Transcriptional activat 31.8 25 0.00087 31.8 2.8 48 301-354 171-218 (234)
191 2rn7_A IS629 ORFA; helix, all 31.8 15 0.0005 29.3 1.0 47 301-347 4-53 (108)
192 2rek_A Putative TETR-family tr 31.4 5.2 0.00018 34.0 -1.8 39 309-349 22-60 (199)
193 1l0o_C Sigma factor; bergerat 31.0 10 0.00035 33.3 0.0 45 303-352 198-242 (243)
194 2kvr_A Ubiquitin carboxyl-term 31.0 15 0.00052 31.5 1.1 24 327-350 72-95 (130)
195 3dcf_A Transcriptional regulat 30.1 13 0.00043 31.6 0.4 43 307-350 35-77 (218)
196 3nxc_A HTH-type protein SLMA; 29.6 17 0.00058 30.7 1.2 35 315-350 37-71 (212)
197 1yse_A DNA-binding protein SAT 29.4 9.8 0.00033 33.6 -0.4 20 216-235 26-45 (141)
198 2hxo_A Putative TETR-family tr 28.9 27 0.00091 31.6 2.4 49 301-350 13-62 (237)
199 1u78_A TC3 transposase, transp 28.9 22 0.00075 28.9 1.7 42 302-348 5-46 (141)
200 3qp6_A CVIR transcriptional re 28.2 46 0.0016 31.1 4.0 50 300-355 194-243 (265)
201 3ccy_A Putative TETR-family tr 27.5 28 0.00095 29.5 2.1 40 309-349 20-59 (203)
202 3on2_A Probable transcriptiona 26.9 18 0.00061 30.1 0.8 41 309-350 18-58 (199)
203 2k27_A Paired box protein PAX- 26.6 22 0.00076 30.1 1.4 40 303-347 25-64 (159)
204 3kz9_A SMCR; transcriptional r 26.5 16 0.00055 30.5 0.4 40 309-349 23-62 (206)
205 3him_A Probable transcriptiona 26.3 22 0.00075 29.8 1.3 41 308-349 21-61 (211)
206 3f1b_A TETR-like transcription 25.7 13 0.00044 31.2 -0.3 40 309-349 20-59 (203)
207 3t72_q RNA polymerase sigma fa 25.3 27 0.00092 28.4 1.6 53 304-357 20-72 (99)
208 3bd1_A CRO protein; transcript 25.2 16 0.00056 27.2 0.2 23 327-349 14-36 (79)
209 2fjr_A Repressor protein CI; g 25.2 26 0.00089 30.3 1.6 39 213-259 7-45 (189)
210 3rd3_A Probable transcriptiona 24.9 17 0.00056 30.3 0.2 41 309-350 16-56 (197)
211 3fx7_A Putative uncharacterize 24.9 47 0.0016 27.3 2.9 22 206-227 4-25 (94)
212 2hin_A GP39, repressor protein 24.9 17 0.00057 28.1 0.2 22 327-348 13-34 (71)
213 3g1o_A Transcriptional regulat 24.6 19 0.00066 32.0 0.6 41 309-350 49-89 (255)
214 3fmy_A HTH-type transcriptiona 23.8 55 0.0019 24.1 3.0 41 302-349 9-49 (73)
215 1nr3_A MTH0916, DNA-binding pr 23.6 19 0.00065 29.7 0.4 25 227-257 4-28 (122)
216 2oi8_A Putative regulatory pro 23.5 19 0.00064 31.7 0.3 41 308-349 21-61 (216)
217 2qwt_A Transcriptional regulat 23.2 7 0.00024 33.5 -2.6 40 309-350 19-58 (196)
218 2fq4_A Transcriptional regulat 23.2 16 0.00054 31.0 -0.2 41 309-350 18-58 (192)
219 1pdn_C Protein (PRD paired); p 23.1 25 0.00087 27.7 1.0 42 303-349 17-58 (128)
220 3c3w_A Two component transcrip 23.1 32 0.0011 30.3 1.7 47 302-354 148-194 (225)
221 2g7l_A TETR-family transcripti 22.8 24 0.00081 32.2 0.8 40 310-350 26-65 (243)
222 1neq_A DNA-binding protein NER 22.5 33 0.0011 26.1 1.5 30 221-256 15-44 (74)
223 3i5g_B Myosin regulatory light 22.2 91 0.0031 26.0 4.4 40 300-339 6-50 (153)
224 3ppb_A Putative TETR family tr 22.1 25 0.00084 29.1 0.7 42 308-350 14-55 (195)
225 2iai_A Putative transcriptiona 22.0 48 0.0016 28.8 2.7 40 309-349 36-75 (230)
226 2zcx_A SCO7815, TETR-family tr 21.7 18 0.00062 32.1 -0.2 40 309-349 29-68 (231)
227 3aqt_A Bacterial regulatory pr 21.6 13 0.00045 33.1 -1.1 41 309-350 52-92 (245)
228 2hku_A A putative transcriptio 21.6 14 0.00049 31.7 -0.9 40 309-350 26-65 (215)
229 3gzi_A Transcriptional regulat 21.5 26 0.00088 29.8 0.8 40 309-349 23-62 (218)
230 2csf_A DNA-binding protein SAT 21.3 42 0.0014 28.0 1.9 31 209-239 19-50 (101)
231 1fi6_A EH domain protein REPS1 21.2 33 0.0011 26.4 1.2 42 304-345 3-49 (92)
232 2qib_A TETR-family transcripti 21.1 15 0.00051 32.3 -0.9 41 309-350 19-59 (231)
233 2rae_A Transcriptional regulat 20.9 27 0.00091 29.5 0.7 40 309-349 23-62 (207)
234 3tla_A MCCF; serine protease, 20.9 21 0.00071 35.8 0.0 18 210-227 95-112 (371)
235 3kor_A Possible Trp repressor; 20.7 36 0.0012 29.1 1.4 42 207-254 53-95 (119)
236 1rzs_A Antirepressor, regulato 20.4 30 0.001 25.1 0.8 19 327-345 13-31 (61)
237 1a0p_A Site-specific recombina 20.4 79 0.0027 28.0 3.8 21 298-318 105-125 (290)
238 1xwr_A Regulatory protein CII; 20.4 69 0.0024 26.2 3.1 36 228-271 23-58 (97)
239 2np5_A Transcriptional regulat 20.0 15 0.00053 31.4 -1.0 40 309-349 15-54 (203)
No 1
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=100.00 E-value=3.9e-47 Score=345.63 Aligned_cols=157 Identities=89% Similarity=1.306 Sum_probs=126.6
Q ss_pred CCCCCCChHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccCChhhhhhcchhHHHHHHhhhcCC
Q psy3400 203 SEEDAPTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTT 282 (417)
Q Consensus 203 ~~~d~~~~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqLS~knm~kLkPlLqkWLeEae~~~ 282 (417)
+++|.++++|||+||++||+|||+|||||+|||.+|+.+||+.|||+||||||+++|+++|||||+|+|++||+|++...
T Consensus 5 ~~~~~~~~~~l~~fa~~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae~~~ 84 (164)
T 2xsd_C 5 SDEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSS 84 (164)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHCC--
T ss_pred ccccccchhHHHHHHHHHHHHHhhcCCcccccccccccccCCCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhcccc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCchhHHhhcCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 283 GSPTSIDKIAAQGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 283 ~s~~s~~~~~~~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
+.+...+.+...+++||+||+|+..|+.+||..|..++||+..+|++||.+|+|++++|+|||||||+|+||..+..
T Consensus 85 ~~~~~~~~~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 161 (164)
T 2xsd_C 85 GSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAA 161 (164)
T ss_dssp ---------------------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC--
T ss_pred CCCcccccccccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCCC
Confidence 77777777777788899999999999999999999999999999999999999999999999999999999987653
No 2
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=100.00 E-value=1.1e-45 Score=332.68 Aligned_cols=146 Identities=60% Similarity=0.916 Sum_probs=130.6
Q ss_pred CChHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccCChhhhhhcchhHHHHHHhhhcCCCC--C
Q psy3400 208 PTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGS--P 285 (417)
Q Consensus 208 ~~~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqLS~knm~kLkPlLqkWLeEae~~~~s--~ 285 (417)
.+.+|||+||+.||+|||+|||||+|||.+|+.+||++|||+||||||+++||++|||||+|+|++||+|+|..... .
T Consensus 7 ~~~~~l~~fa~~fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~Wl~eae~~~~~~~~ 86 (155)
T 3l1p_A 7 ALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNENLQEI 86 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHS
T ss_pred hhHHHHHHHHHHHHhhhheecccHHHHHHHHHhhcCcccccccccccccccCChhhHhhcchHHHHHhhhhhcccCcccc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999854311 1
Q ss_pred CchhHHhhcCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 286 TSIDKIAAQGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 286 ~s~~~~~~~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
...+.+. +++||+||.|+..|+..||..|..++||+..+|.+||.+|+|++++|+|||||||+|+||.
T Consensus 87 ~~~~~~~--~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 87 SKSETLV--QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp SCC---C--CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred ccccccc--cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 1111111 4677889999999999999999999999999999999999999999999999999999985
No 3
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=100.00 E-value=1.1e-44 Score=323.48 Aligned_cols=146 Identities=60% Similarity=0.953 Sum_probs=126.8
Q ss_pred ChHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccCChhhhhhcchhHHHHHHhhhcCCCCCCch
Q psy3400 209 TSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSI 288 (417)
Q Consensus 209 ~~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqLS~knm~kLkPlLqkWLeEae~~~~s~~s~ 288 (417)
.++|||+||++||+|||+|||||+|||.+|+.+||++|||+||||||+++|+++|||||+|+|++|++|+|...... .
T Consensus 1 ~~~~l~~fa~~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~~~~--~ 78 (146)
T 1au7_A 1 GMRALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGALY--N 78 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCCC--------
T ss_pred CccHHHHHHHHHHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccCCChHHHHhcchHHHHHHHHhhcccCcc--C
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999765332 2
Q ss_pred hHHhhcCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccC
Q psy3400 289 DKIAAQGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMT 356 (417)
Q Consensus 289 ~~~~~~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~ 356 (417)
+.....+++||+||+|+..|+.+||..|..++||+..+|.+||..|+|++++|+|||||||+|+||++
T Consensus 79 ~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 79 EKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp ----------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSCC
T ss_pred cccCCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhccC
Confidence 33444567788999999999999999999999999999999999999999999999999999999863
No 4
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=311.20 Aligned_cols=147 Identities=43% Similarity=0.702 Sum_probs=132.1
Q ss_pred CChHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccCChhhhhhcchhHHHHHHhhhcCCCC-CC
Q psy3400 208 PTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGS-PT 286 (417)
Q Consensus 208 ~~~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqLS~knm~kLkPlLqkWLeEae~~~~s-~~ 286 (417)
++++||++||+.||+|||+|||||+|||.+|+.+||+.|||+||||||++++|++|||+|+|+|++||++++..... ..
T Consensus 1 ~~~~~~~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~ 80 (151)
T 3d1n_I 1 INMEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQ 80 (151)
T ss_dssp -CHHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCCChhHHHHhchhHHHHHHHHHhccccCcc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999998854211 11
Q ss_pred chhH-H-hhcCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhc
Q psy3400 287 SIDK-I-AAQGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354 (417)
Q Consensus 287 s~~~-~-~~~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR 354 (417)
.... . ...+++||+||.|+..|+.+||.+|..++||+..++.+||.+|+|++++|+|||||||+|+||
T Consensus 81 ~~~~~~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 81 NLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp THHHHHCSSCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cccccCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 1111 2 224677889999999999999999999999999999999999999999999999999999997
No 5
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=100.00 E-value=3.6e-42 Score=311.17 Aligned_cols=152 Identities=61% Similarity=0.969 Sum_probs=128.9
Q ss_pred CCCCChHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccCChhhhhhcchhHHHHHHhhhcCCCC
Q psy3400 205 EDAPTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGS 284 (417)
Q Consensus 205 ~d~~~~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqLS~knm~kLkPlLqkWLeEae~~~~s 284 (417)
||.++++||++||+.||.+||++||||++||.+++.+||+.|+|+||||||+++||++|||+|+|+|++||+|++.....
T Consensus 1 ~~~~~~~~~~~~~~~~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~lS~knm~klkPlL~~WL~e~e~~~~~ 80 (160)
T 1e3o_C 1 EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAEANLSS 80 (160)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHhhccccCCCcCccccccccccCCChHHHHhcchhHHHHHHhhhccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999854322
Q ss_pred CC------ch--hHHhhcCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccC
Q psy3400 285 PT------SI--DKIAAQGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMT 356 (417)
Q Consensus 285 ~~------s~--~~~~~~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~ 356 (417)
.. .. .......++||+||.|+..|+.+||..|..++||+..+|++||..|+|++++|+|||||||+|+||++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 160 (160)
T 1e3o_C 81 DSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 160 (160)
T ss_dssp -----------------------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCCcCCCCCCCCCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhccC
Confidence 11 11 11223357788999999999999999999999999999999999999999999999999999999863
No 6
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.83 E-value=6.2e-22 Score=184.59 Aligned_cols=137 Identities=20% Similarity=0.261 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccCChhhhhhcchhHHHHHHhhhcC-------C
Q psy3400 210 SDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADST-------T 282 (417)
Q Consensus 210 ~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqLS~knm~kLkPlLqkWLeEae~~-------~ 282 (417)
.+|...|++++|.+++..|+||.+|+..+| .+|++|++|++....+.+++ +..|..|+...... .
T Consensus 25 ~e~p~~l~~~Ik~~l~~~gitQ~~lA~~~G------iSqs~ISr~l~~~~~~~~~k--raaly~W~~~~~~~i~~~~~~~ 96 (194)
T 1ic8_A 25 QEDPWRVAKMVKSYLQQHNIPQREVVDTTG------LNQSHLSQHLNKGTPMKTQK--RAALYTWYVRKQREVAQQFTHA 96 (194)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCHHHHHHHHC------CCHHHHHHHHHSBCCCCHHH--HHHHHHHHHHHTTTTHHHHCCC
T ss_pred ccCHHHHHHHHHHHHHHcCCCHHHHHHHhC------CChHHHHHHHhcCccccccc--cccchhhHHHhhhhhhccccCC
Confidence 356778999999999999999999999885 59999999988776665544 46788898876431 1
Q ss_pred C-CCCchh---HHhhcCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcC---------------------CC
Q psy3400 283 G-SPTSID---KIAAQGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQ---------------------LE 337 (417)
Q Consensus 283 ~-s~~s~~---~~~~~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~Lg---------------------Ls 337 (417)
. .+...+ .....+++||+||.|+..|+.+||+.|..++||+..+|++||..|+ |+
T Consensus 97 ~~~~~~~~~~~~~~~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lt 176 (194)
T 1ic8_A 97 GQGGLIEEPTGDELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVT 176 (194)
T ss_dssp --------------------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCC
T ss_pred CCCCCCCCCcccccccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccC
Confidence 1 011111 1123467788999999999999999999999999999999999999 99
Q ss_pred CCchhcccchhhhhhhc
Q psy3400 338 KEVVRVWFCNRRQKEKR 354 (417)
Q Consensus 338 ~~qVqVWFQNRR~K~KR 354 (417)
+.+|+|||||||+|+|.
T Consensus 177 e~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 177 EVRVYNWFANRRKEEAF 193 (194)
T ss_dssp HHHHHHHHHHHHHHCC-
T ss_pred ccccchhchhhhhhhhc
Confidence 99999999999999875
No 7
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=4.2e-19 Score=142.52 Aligned_cols=68 Identities=28% Similarity=0.389 Sum_probs=63.5
Q ss_pred CCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCCCCC
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPNTLG 362 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~~~g 362 (417)
++.||+|+.|+..|+.+||..|..++||+..++++||..|+|++++|+|||||||+|+||..+....+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~~ 72 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNG 72 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccCCC
Confidence 56788999999999999999999999999999999999999999999999999999999988776444
No 8
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-19 Score=144.03 Aligned_cols=65 Identities=32% Similarity=0.448 Sum_probs=61.6
Q ss_pred cCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
.+++||+||.|+..|+.+||..|..++||+..++.+||..|+|++++|+|||||||+|+||..+.
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k~ 83 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 83 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 46778899999999999999999999999999999999999999999999999999999998764
No 9
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=4.7e-19 Score=138.83 Aligned_cols=64 Identities=25% Similarity=0.397 Sum_probs=60.5
Q ss_pred CCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
++.||+|+.|+..|+.+||..|..++||+..++++||..|+|++++|+|||||||+|+||..+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPS 68 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCC
Confidence 5678899999999999999999999999999999999999999999999999999999997653
No 10
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5e-19 Score=142.18 Aligned_cols=65 Identities=34% Similarity=0.438 Sum_probs=61.4
Q ss_pred cCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
.++.||+||.|+..|+.+||..|..++||+..++++||..|+|++++|+|||||||+|+||..+.
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~s 78 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPS 78 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCC
Confidence 46778899999999999999999999999999999999999999999999999999999998653
No 11
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.9e-19 Score=141.34 Aligned_cols=68 Identities=28% Similarity=0.429 Sum_probs=62.7
Q ss_pred CCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCCCCC
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPNTLG 362 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~~~g 362 (417)
+++||+||.|+.+|+.+||..|..++||+..++++||.+|+|++++|+|||||||+|+||.......+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~~~ 72 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENG 72 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999999999999999999999999999999999987655443
No 12
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=6.5e-19 Score=137.74 Aligned_cols=64 Identities=28% Similarity=0.452 Sum_probs=60.8
Q ss_pred CCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
++.||+||.||.+|+.+||..|..++||+..++.+||..|+|++++|+|||||||+|+||..+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 5678899999999999999999999999999999999999999999999999999999998764
No 13
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=8.5e-19 Score=137.07 Aligned_cols=64 Identities=30% Similarity=0.481 Sum_probs=60.6
Q ss_pred CCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
+++||+||.|+..|+.+||..|..++||+..++++||..|+|++.+|+|||||||+|+||..+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 5678899999999999999999999999999999999999999999999999999999997654
No 14
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=7.6e-19 Score=140.36 Aligned_cols=65 Identities=28% Similarity=0.512 Sum_probs=61.1
Q ss_pred cCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
..++||+||.||.+|+.+||..|..++||+..++++||.+|+|++++|+|||||||+|+||....
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 78 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPS 78 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccC
Confidence 45678899999999999999999999999999999999999999999999999999999997653
No 15
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=8e-19 Score=137.38 Aligned_cols=64 Identities=34% Similarity=0.485 Sum_probs=60.5
Q ss_pred CCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
++.||+|+.|+.+|+.+||..|..++||+..++++||.+|+|++++|+|||||||+|+||..+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPS 68 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCC
Confidence 4577899999999999999999999999999999999999999999999999999999997653
No 16
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-18 Score=136.84 Aligned_cols=64 Identities=34% Similarity=0.460 Sum_probs=60.4
Q ss_pred CCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
.+.||+|+.||..|+.+||..|..++||+..++++||..|+|++++|+|||||||+|+||..+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~s 68 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPS 68 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCCC
Confidence 5678899999999999999999999999999999999999999999999999999999997653
No 17
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.73 E-value=3.1e-19 Score=161.03 Aligned_cols=141 Identities=17% Similarity=0.187 Sum_probs=85.6
Q ss_pred HHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccCChhhhhhcc-h--hHHHHHHhhhcCC-----CCC
Q psy3400 214 EAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLK-P--LLQKWLEEADSTT-----GSP 285 (417)
Q Consensus 214 e~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqLS~knm~kLk-P--lLqkWLeEae~~~-----~s~ 285 (417)
+.+|+++|.....-+++|..++...- .++|.+++.+-+.--.+.++..-+ + -+..||.+.+... ...
T Consensus 7 ~~i~~~i~~~l~~~~i~q~~fa~~il-----g~sq~~ls~~l~~pkpw~~l~~g~~~y~rm~~WL~~pe~~r~~~l~~~~ 81 (164)
T 2d5v_A 7 KEVAQRITTELKRYSIPQAIFAQRVL-----CRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAA 81 (164)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHT-----SCCHHHHHHHHHSCCCGGGCSTTHHHHHHHHHHHHSCHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHh-----cCCchhHHHHcCCCCCHHHHcccchHHHHHHHHHhccchhhhhhhhccc
Confidence 34455555555555667776664321 135666665533332233322111 1 2557887654221 000
Q ss_pred C----chhHHhhcCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 286 T----SIDKIAAQGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 286 ~----s~~~~~~~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
. .........++||+||.|+..|+.+||..|..++||+..+|++||.+|+|++++|+|||||||+|+||.....
T Consensus 82 ~~~~~~~~~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~~ 159 (164)
T 2d5v_A 82 CKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEH 159 (164)
T ss_dssp ------------------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC----
T ss_pred ccccccccCCcCCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCCC
Confidence 0 0001122356788999999999999999999999999999999999999999999999999999999876543
No 18
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.73 E-value=5.5e-19 Score=135.22 Aligned_cols=60 Identities=37% Similarity=0.465 Sum_probs=53.3
Q ss_pred CCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 296 RKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 296 kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
++||+||.|+..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+||.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 567899999999999999999999999999999999999999999999999999999985
No 19
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9.1e-19 Score=140.54 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=60.8
Q ss_pred cCCCCCCCceechhhHHHHhhhccCC----CCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHKQ----PKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~n----~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
.+++||+||.||.+|+.+||.+|..+ +||+..++++||.+|+|++++|+|||||||+|+||....
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCC
Confidence 35678899999999999999999999 999999999999999999999999999999999997544
No 20
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.73 E-value=9.5e-19 Score=136.63 Aligned_cols=63 Identities=24% Similarity=0.393 Sum_probs=60.0
Q ss_pred CCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 297 KRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 297 kRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
+||+||.||..|+.+||..|..++||+..++.+||..|+|++++|+|||||||+|+||..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 577899999999999999999999999999999999999999999999999999999987654
No 21
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.73 E-value=1.9e-18 Score=136.65 Aligned_cols=65 Identities=25% Similarity=0.337 Sum_probs=61.3
Q ss_pred CCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
.+.||+|+.|+..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+||.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhccc
Confidence 46788999999999999999999999999999999999999999999999999999999987654
No 22
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.72 E-value=9.1e-19 Score=134.56 Aligned_cols=61 Identities=28% Similarity=0.339 Sum_probs=56.4
Q ss_pred CCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccC
Q psy3400 296 RKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMT 356 (417)
Q Consensus 296 kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~ 356 (417)
+.||+||.||..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+||..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4678899999999999999999999999999999999999999999999999999999864
No 23
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.72 E-value=8.9e-19 Score=133.66 Aligned_cols=58 Identities=22% Similarity=0.461 Sum_probs=53.5
Q ss_pred CCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhc
Q psy3400 297 KRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354 (417)
Q Consensus 297 kRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR 354 (417)
+||+||.||..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999997
No 24
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=1.2e-18 Score=131.46 Aligned_cols=58 Identities=38% Similarity=0.553 Sum_probs=56.1
Q ss_pred CCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 298 RKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 298 RRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
||+||.||..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+||+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 58 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhccC
Confidence 5789999999999999999999999999999999999999999999999999999984
No 25
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.72 E-value=9.6e-19 Score=136.34 Aligned_cols=64 Identities=28% Similarity=0.384 Sum_probs=60.7
Q ss_pred CCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 296 RKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 296 kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
++||+||.|+..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+||..+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 5788999999999999999999999999999999999999999999999999999999987653
No 26
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.72 E-value=1.5e-18 Score=164.30 Aligned_cols=134 Identities=21% Similarity=0.254 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccCChhhhhhcchhHHHHHHhhhc----C-----C
Q psy3400 212 DLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADS----T-----T 282 (417)
Q Consensus 212 ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqLS~knm~kLkPlLqkWLeEae~----~-----~ 282 (417)
+...|++++|.+|+..|+||.+|...+|. +|++|++|++.... ....| +..+..|+..... . .
T Consensus 28 ~~~~~~~~Ik~~r~~~gltQ~evA~~tGI------SqS~ISq~e~~g~~-~t~~k-~a~~y~Wy~~~~~e~~~~~~~~~~ 99 (221)
T 2h8r_A 28 DPWRAAKMIKGYMQQHNIPQREVVDVTGL------NQSHLSQHLNKGTP-MKTQK-RAALYTWYVRKQREILRQFNQTVQ 99 (221)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHTC------CHHHHHHHHTTCCC-CCHHH-HHHHHHHHHHHHHHHHHTTTTCC-
T ss_pred CcHHHHHHHHHHHHHcCCCHHHHHHHhCC------CHHHHHHHHhCCCc-hhHHH-HHHHHHHHHHHhhhhhhccccccc
Confidence 44678899999999999999999998854 99999999974322 22222 2445556654210 0 0
Q ss_pred --CCCC--------------------------chhHHhhcCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHc
Q psy3400 283 --GSPT--------------------------SIDKIAAQGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSL 334 (417)
Q Consensus 283 --~s~~--------------------------s~~~~~~~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~L 334 (417)
+... ........+++||.|+.|+..|+.+||++|..++||+..+|++||..|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~ 179 (221)
T 2h8r_A 100 SSGNMTDKSSQDQLLFLFPEFSQQSHGPGQSDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEEC 179 (221)
T ss_dssp ------------------------------------------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhhhhccccCCCCCcccccccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 0000 001112246778899999999999999999999999999999999998
Q ss_pred C---------------------CCCCchhcccchhhhhhh
Q psy3400 335 Q---------------------LEKEVVRVWFCNRRQKEK 353 (417)
Q Consensus 335 g---------------------Ls~~qVqVWFQNRR~K~K 353 (417)
+ |++.+|+|||+|||++..
T Consensus 180 n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~~ 219 (221)
T 2h8r_A 180 NRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 219 (221)
T ss_dssp HHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTCC
T ss_pred ChhhhcccccccchhccccccccCHHHHHHHhHHhhhhhh
Confidence 8 899999999999998753
No 27
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.72 E-value=1.6e-18 Score=134.21 Aligned_cols=62 Identities=29% Similarity=0.489 Sum_probs=58.9
Q ss_pred CCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCC
Q psy3400 296 RKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTP 357 (417)
Q Consensus 296 kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~ 357 (417)
++||+||.||.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+||...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 46789999999999999999999999999999999999999999999999999999998754
No 28
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=2e-18 Score=138.69 Aligned_cols=64 Identities=30% Similarity=0.443 Sum_probs=60.5
Q ss_pred CCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
.+.||+||.|+..|+.+||..|..++||+..++++||..|+|++++|+|||||||+|+||..+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 4677899999999999999999999999999999999999999999999999999999997654
No 29
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.72 E-value=1.1e-18 Score=139.15 Aligned_cols=66 Identities=33% Similarity=0.452 Sum_probs=61.3
Q ss_pred cCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
.+++||.||.||..|+.+||..|..++||+..++++||..|+|++++|+|||||||+|+||.....
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 356788899999999999999999999999999999999999999999999999999999876554
No 30
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.3e-18 Score=134.89 Aligned_cols=64 Identities=31% Similarity=0.403 Sum_probs=60.2
Q ss_pred CCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
.+.||+|+.|+.+|+.+||..|..++||+..++++||..|+|++++|+|||||||+|+||..+.
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCC
Confidence 4567789999999999999999999999999999999999999999999999999999998664
No 31
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.71 E-value=2.1e-18 Score=134.54 Aligned_cols=63 Identities=29% Similarity=0.492 Sum_probs=59.8
Q ss_pred CCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 297 KRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 297 kRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
+||+||.||..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+||.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 578999999999999999999999999999999999999999999999999999999986654
No 32
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.71 E-value=2.4e-18 Score=140.51 Aligned_cols=64 Identities=28% Similarity=0.434 Sum_probs=56.3
Q ss_pred cCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCC
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTP 357 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~ 357 (417)
.++.||+||.||..|+.+||..|..++||+..++++||..|+|++++|+|||||||+|+||..+
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 88 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEHK 88 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhcC
Confidence 3567789999999999999999999999999999999999999999999999999999999753
No 33
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=2.3e-18 Score=134.34 Aligned_cols=63 Identities=33% Similarity=0.444 Sum_probs=60.0
Q ss_pred CCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 297 KRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 297 kRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
+||+||.||..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+||..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 578899999999999999999999999999999999999999999999999999999987654
No 34
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-18 Score=135.46 Aligned_cols=65 Identities=32% Similarity=0.443 Sum_probs=61.3
Q ss_pred cCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
.+++||.||.|+..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+||..+.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 46778899999999999999999999999999999999999999999999999999999997664
No 35
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.71 E-value=1.7e-18 Score=139.88 Aligned_cols=62 Identities=15% Similarity=0.337 Sum_probs=58.5
Q ss_pred cCCCCCCCceechhhHHHHhhhccC----CCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHK----QPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~----n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
.+++||+||.||.+|+.+||..|.. ++||+..+|++||..|+|++++|+|||||||+|+|+.
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 3567889999999999999999999 9999999999999999999999999999999999863
No 36
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.71 E-value=2.1e-18 Score=139.14 Aligned_cols=63 Identities=27% Similarity=0.443 Sum_probs=55.0
Q ss_pred CCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCC
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTP 357 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~ 357 (417)
+++||+||.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+||..+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 456789999999999999999999999999999999999999999999999999999999754
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.71 E-value=5.7e-18 Score=131.47 Aligned_cols=62 Identities=32% Similarity=0.486 Sum_probs=58.9
Q ss_pred CCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 298 RKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 298 RRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
||+|+.||..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+||.....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~~ 63 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRES 63 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCTT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchhc
Confidence 67899999999999999999999999999999999999999999999999999999976653
No 38
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.70 E-value=4.5e-18 Score=127.56 Aligned_cols=57 Identities=39% Similarity=0.502 Sum_probs=55.0
Q ss_pred CCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhh
Q psy3400 297 KRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEK 353 (417)
Q Consensus 297 kRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~K 353 (417)
+||+|+.|+..|+.+||..|..++||+..++.+||..|+|++.+|+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999986
No 39
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=6e-18 Score=133.22 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=58.3
Q ss_pred CCCCceechhhHHHHhhhccC-CCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 298 RKKRTSIEVTVKGALETHFHK-QPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 298 RRkRT~fT~~Ql~~LE~~F~~-n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
.|+|+.|+..|+.+||..|.. ++||+..++.+||..|+|++++|+|||||||+|+||..+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCC
Confidence 467999999999999999996 99999999999999999999999999999999999987654
No 40
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.70 E-value=3.4e-18 Score=129.98 Aligned_cols=58 Identities=38% Similarity=0.550 Sum_probs=55.7
Q ss_pred CCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 298 RKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 298 RRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
||+||.||..|+..||..|..++||+..++.+||..|||++.+|+|||||||+|+||.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999985
No 41
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.70 E-value=3.6e-18 Score=136.25 Aligned_cols=64 Identities=28% Similarity=0.353 Sum_probs=60.2
Q ss_pred cCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCC
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTP 357 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~ 357 (417)
.++.||+||.|+..|+.+||..|..++||+..++++||..|+|++++|+|||||||+|+||..+
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 3567789999999999999999999999999999999999999999999999999999998754
No 42
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.70 E-value=3.4e-18 Score=141.50 Aligned_cols=66 Identities=35% Similarity=0.510 Sum_probs=62.0
Q ss_pred cCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
..++||+||.||..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+||.....
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 356788999999999999999999999999999999999999999999999999999999987655
No 43
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.70 E-value=2.7e-18 Score=130.63 Aligned_cols=59 Identities=27% Similarity=0.457 Sum_probs=48.6
Q ss_pred CCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhh
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEK 353 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~K 353 (417)
+++||+|+.|+..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 56778999999999999999999999999999999999999999999999999999986
No 44
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.70 E-value=3.9e-18 Score=137.17 Aligned_cols=63 Identities=25% Similarity=0.482 Sum_probs=58.9
Q ss_pred cCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccC
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMT 356 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~ 356 (417)
.+++||+||.|+..|+.+||..|..++||+..++.+||..|+|++++|+|||||||+|+||..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 467788999999999999999999999999999999999999999999999999999999864
No 45
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=2.9e-18 Score=142.59 Aligned_cols=64 Identities=30% Similarity=0.437 Sum_probs=56.9
Q ss_pred CCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
++.||+||.||..|+.+||..|..++||+..++++||..|+|++++|+|||||||+|+||..+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 5677899999999999999999999999999999999999999999999999999999997653
No 46
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=6.7e-18 Score=133.40 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=58.4
Q ss_pred CCCCceechhhHHHHhhhcc-CCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 298 RKKRTSIEVTVKGALETHFH-KQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 298 RRkRT~fT~~Ql~~LE~~F~-~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
+++||.||..|+.+||..|. .++||+..++.+||..|||++++|+|||||||+|+||.....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCC
Confidence 56899999999999999999 599999999999999999999999999999999999987654
No 47
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.69 E-value=3.6e-18 Score=138.26 Aligned_cols=61 Identities=15% Similarity=0.337 Sum_probs=57.4
Q ss_pred cCCCCCCCceechhhHHHHhhhccC-----CCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHK-----QPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~-----n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
..++||+||.||.+|+.+|| .|.. ++||+..+|++||.+|+|++++|+|||||||+|+|+.
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 45678899999999999999 8999 9999999999999999999999999999999999863
No 48
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=9.7e-18 Score=133.43 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=59.2
Q ss_pred CCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 297 KRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 297 kRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
.++.|+.||.+|+.+||..|..++||+..++++||.+|+|++++|+|||||||+|+||..+..
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccC
Confidence 455799999999999999999999999999999999999999999999999999999987665
No 49
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-17 Score=132.60 Aligned_cols=61 Identities=23% Similarity=0.406 Sum_probs=57.6
Q ss_pred CCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 299 KKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 299 RkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
++|+.||.+|+.+||..|..++||+..++.+||..|+|++++|+|||||||+|+||..+..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 4677799999999999999999999999999999999999999999999999999987765
No 50
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.68 E-value=8.2e-18 Score=127.88 Aligned_cols=58 Identities=24% Similarity=0.357 Sum_probs=50.7
Q ss_pred CCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCC
Q psy3400 300 KRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTP 357 (417)
Q Consensus 300 kRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~ 357 (417)
.|+.||..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+||..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 5899999999999999999999999999999999999999999999999999998754
No 51
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=2e-17 Score=130.55 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=59.3
Q ss_pred CCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 297 KRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 297 kRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
.++.|+.||.+|+.+||..|..++||+..++++||.+|+|++++|+|||||||+|+||.....
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCC
Confidence 467899999999999999999999999999999999999999999999999999999976554
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=2e-17 Score=127.17 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=56.9
Q ss_pred CCCCCCceechhhHHHHhhhc---cCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 296 RKRKKRTSIEVTVKGALETHF---HKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 296 kkRRkRT~fT~~Ql~~LE~~F---~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
..||+|+.|+..|+.+||.+| ..++||+..++++||..|||++.+|+|||||||+|+||.
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 356789999999999999999 999999999999999999999999999999999999873
No 53
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=1.6e-17 Score=137.67 Aligned_cols=65 Identities=22% Similarity=0.332 Sum_probs=61.7
Q ss_pred CCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcC---------------CCCCchhcccchhhhhhhccCCCC
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQ---------------LEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~Lg---------------Ls~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
+++||.|+.|+..|+.+||.+|..++||+..++++||..|+ |++.+|+|||||||+|+||..+..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~~ 84 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIA 84 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 56788999999999999999999999999999999999999 999999999999999999987764
No 54
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.66 E-value=3.5e-17 Score=128.98 Aligned_cols=62 Identities=26% Similarity=0.375 Sum_probs=59.0
Q ss_pred CCCCceechhhHHHHhhhc---cCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 298 RKKRTSIEVTVKGALETHF---HKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 298 RRkRT~fT~~Ql~~LE~~F---~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
||+|+.|+..|+.+||.+| ..++||+..++.+||..+||++.+|+|||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 6789999999999999999 9999999999999999999999999999999999999987654
No 55
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=2.2e-17 Score=132.85 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=56.6
Q ss_pred CCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 299 KKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 299 RkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
++|+.||.+|+.+||+.|..++||+..+|++||..+||++++|+|||||||+|+|+..-+-
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 3567799999999999999999999999999999999999999999999999999976553
No 56
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.66 E-value=1.5e-17 Score=125.02 Aligned_cols=55 Identities=35% Similarity=0.466 Sum_probs=51.5
Q ss_pred ceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccC
Q psy3400 302 TSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMT 356 (417)
Q Consensus 302 T~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~ 356 (417)
|.|+..|+..||..|..++||+..++.+||..|||++++|+|||||||+|+||..
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 56 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQT 56 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcccC
Confidence 6799999999999999999999999999999999999999999999999999863
No 57
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=3.1e-17 Score=129.30 Aligned_cols=64 Identities=20% Similarity=0.381 Sum_probs=59.5
Q ss_pred CCCCCCCceechhhHHHHhhhccC---CCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHK---QPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~---n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
++.||+|+.|+..|+.+||.+|.. ++||+..++++||.+++|++.+|+|||||||+|+|+....
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 467788999999999999999976 9999999999999999999999999999999999987654
No 58
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.66 E-value=2.2e-17 Score=137.11 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=56.5
Q ss_pred cCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccC
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMT 356 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~ 356 (417)
....||+|+.|+..|+.+||..|..++||+..++++||.+|+|++++|+|||||||+|+||..
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 345667899999999999999999999999999999999999999999999999999999975
No 59
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.1e-16 Score=132.19 Aligned_cols=58 Identities=12% Similarity=0.263 Sum_probs=54.9
Q ss_pred eechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCCC
Q psy3400 303 SIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPNT 360 (417)
Q Consensus 303 ~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~~ 360 (417)
.||.+|+.+||+.|..++||+..+|.+||..|+|++++|+|||||||+|+||+.....
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhh
Confidence 7899999999999999999999999999999999999999999999999998776654
No 60
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.64 E-value=4.3e-17 Score=132.44 Aligned_cols=62 Identities=26% Similarity=0.375 Sum_probs=58.1
Q ss_pred CCCCceechhhHHHHhhhc---cCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 298 RKKRTSIEVTVKGALETHF---HKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 298 RRkRT~fT~~Ql~~LE~~F---~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
||+|+.|+..|+.+||.+| ..++||+..++++||.+|||++.+|+|||||||+|+||.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 6789999999999999999 9999999999999999999999999999999999999976554
No 61
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.64 E-value=7.4e-17 Score=130.82 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=61.1
Q ss_pred CCCCCCCceechhhHHHHhhhccC---CCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCCCCC
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHK---QPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPNTLG 362 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~---n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~~~g 362 (417)
.++||+|+.|+.+|+.+|+.+|.. ++||+..++++||.+++|++++|+|||||||+|+|+........
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~~~ 75 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRN 75 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCCCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhccC
Confidence 467789999999999999999876 69999999999999999999999999999999999876665333
No 62
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.4e-17 Score=136.05 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=60.8
Q ss_pred cCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHc---------------------CCCCCchhcccchhhhhh
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSL---------------------QLEKEVVRVWFCNRRQKE 352 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~L---------------------gLs~~qVqVWFQNRR~K~ 352 (417)
.+++||+||.|+..|+.+||+.|..++||+..+|++||..| .|++.+|+|||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 46788999999999999999999999999999999999999 799999999999999999
Q ss_pred hccCCC
Q psy3400 353 KRMTPP 358 (417)
Q Consensus 353 KR~~~~ 358 (417)
|+..+.
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 987654
No 63
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.63 E-value=6.8e-17 Score=122.66 Aligned_cols=57 Identities=26% Similarity=0.440 Sum_probs=54.4
Q ss_pred CCceechhhHHHHhhhccC---CCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccC
Q psy3400 300 KRTSIEVTVKGALETHFHK---QPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMT 356 (417)
Q Consensus 300 kRT~fT~~Ql~~LE~~F~~---n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~ 356 (417)
+|+.|+.+|+.+||.+|.. ++||+..++.+||.++||++.+|+|||||||+|+||.+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~t 60 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTIT 60 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccCC
Confidence 4789999999999999999 99999999999999999999999999999999999863
No 64
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=7.8e-17 Score=127.72 Aligned_cols=60 Identities=23% Similarity=0.419 Sum_probs=55.6
Q ss_pred CCCCceechhhHHHHhhhc-cCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCC
Q psy3400 298 RKKRTSIEVTVKGALETHF-HKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTP 357 (417)
Q Consensus 298 RRkRT~fT~~Ql~~LE~~F-~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~ 357 (417)
.|+|+.++.+|+.+||..| ..++||+..++++||.+|+|++++|+|||||||+|+|+...
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~ 69 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGP 69 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCC
Confidence 4566778899999999999 99999999999999999999999999999999999998654
No 65
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.62 E-value=8.4e-17 Score=131.10 Aligned_cols=61 Identities=25% Similarity=0.394 Sum_probs=57.3
Q ss_pred cCCCCCCCceechhhHHHHhhhccC---CCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhc
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHK---QPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~---n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR 354 (417)
..+++|+|+.|+.+|+.+||.+|.. ++||+..++.+||..+||++++|+|||||||+|+|.
T Consensus 24 ~~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 24 KSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp EESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 3556778999999999999999999 999999999999999999999999999999999984
No 66
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.62 E-value=1.1e-16 Score=134.45 Aligned_cols=66 Identities=26% Similarity=0.368 Sum_probs=54.4
Q ss_pred hcCCCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHH------------------cC---CCCCchhcccchhhhh
Q psy3400 293 AQGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADS------------------LQ---LEKEVVRVWFCNRRQK 351 (417)
Q Consensus 293 ~~~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~------------------Lg---Ls~~qVqVWFQNRR~K 351 (417)
..+++||.|+.|+..|+..||..|..++||+..+|++||.. || |++.+|+|||||||+|
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34677889999999999999999999999999999999999 88 9999999999999999
Q ss_pred hhccCCC
Q psy3400 352 EKRMTPP 358 (417)
Q Consensus 352 ~KR~~~~ 358 (417)
+|++.+.
T Consensus 85 ~k~k~~~ 91 (99)
T 1lfb_A 85 EAFRHKL 91 (99)
T ss_dssp TSCCC--
T ss_pred HHHhchh
Confidence 9887654
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-16 Score=125.20 Aligned_cols=59 Identities=36% Similarity=0.456 Sum_probs=54.8
Q ss_pred ceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCCC
Q psy3400 302 TSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPNT 360 (417)
Q Consensus 302 T~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~~ 360 (417)
..+|..|+.+||+.|..++||+..+|.+||.+|+|++++|+|||||||+|+||......
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~~ 67 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSE 67 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSCC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999876543
No 68
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.5e-16 Score=128.47 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=55.8
Q ss_pred ceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCCCC
Q psy3400 302 TSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPNTL 361 (417)
Q Consensus 302 T~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~~~ 361 (417)
..||.+|+.+||..|..++||+..++++||.+|+|++++|+|||||||+|+|+..+....
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~~ 77 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVLD 77 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCCC
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhhc
Confidence 348999999999999999999999999999999999999999999999999998877643
No 69
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.61 E-value=1.8e-16 Score=128.30 Aligned_cols=62 Identities=24% Similarity=0.364 Sum_probs=55.6
Q ss_pred CCCCCceechhhHHHHhhhccC---CCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 297 KRKKRTSIEVTVKGALETHFHK---QPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 297 kRRkRT~fT~~Ql~~LE~~F~~---n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
++++|+.|+..|+.+||.+|.. ++||+..++.+||..+||++.+|+|||||||+|+|+....
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 3456777999999999999999 9999999999999999999999999999999999997543
No 70
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=2.8e-16 Score=123.83 Aligned_cols=61 Identities=28% Similarity=0.422 Sum_probs=57.1
Q ss_pred cCCCCCCCceechhhHHHHhhhccC-CCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhc
Q psy3400 294 QGRKRKKRTSIEVTVKGALETHFHK-QPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354 (417)
Q Consensus 294 ~~kkRRkRT~fT~~Ql~~LE~~F~~-n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR 354 (417)
++++||.||.|+.+|+..|+..|.. ++||+..+|+.||.+|||++++|+|||||||.-.|-
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 3567889999999999999999999 999999999999999999999999999999987654
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.6e-16 Score=120.73 Aligned_cols=57 Identities=23% Similarity=0.393 Sum_probs=52.7
Q ss_pred CCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccC
Q psy3400 300 KRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMT 356 (417)
Q Consensus 300 kRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~ 356 (417)
.+..++..|+..||+.|..++||+..+|.+||.+|+|++++|+|||||||+|.++..
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~ 62 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred CCCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence 345567999999999999999999999999999999999999999999999988754
No 72
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.58 E-value=3.5e-16 Score=122.57 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=49.3
Q ss_pred chhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 305 EVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 305 T~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
|.+|+.+||+.|.+++||+..++.+||..|||++++|++||||||+|+|+.
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 689999999999999999999999999999999999999999999999973
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=5.8e-16 Score=120.73 Aligned_cols=53 Identities=25% Similarity=0.478 Sum_probs=48.8
Q ss_pred hhhHHHHhhhc-cCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 306 VTVKGALETHF-HKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 306 ~~Ql~~LE~~F-~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
..++.+||+.| ..+.||+..+|.+||.+|+|+++||+|||||||+|+|+....
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~~ 62 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGPS 62 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCCC
Confidence 45799999999 679999999999999999999999999999999999986553
No 74
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.46 E-value=1.8e-14 Score=112.41 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=50.7
Q ss_pred eechhhHHHHhhhcc---CCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 303 SIEVTVKGALETHFH---KQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 303 ~fT~~Ql~~LE~~F~---~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
.|+.+|+.+|+.+|. .++||+..++.+||.+++|++++|+|||||||+|+||.....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 689999999999999 999999999999999999999999999999999999876543
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.1e-14 Score=112.61 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=45.2
Q ss_pred hhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhh
Q psy3400 306 VTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEK 353 (417)
Q Consensus 306 ~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~K 353 (417)
++|+..|+++|..|++|+.++|..||+.+||++++|||||||||++..
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~~ 61 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQY 61 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccccc
Confidence 578999999999999999999999999999999999999999998543
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.22 E-value=2e-12 Score=106.89 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=52.0
Q ss_pred ceechhhHHHHhhhccC---CCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCC
Q psy3400 302 TSIEVTVKGALETHFHK---QPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPP 358 (417)
Q Consensus 302 T~fT~~Ql~~LE~~F~~---n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~ 358 (417)
-.|+.+++.+|+.+|.. ++||+..++++||.++||+++||++||+|||.|.|+....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 35789999999999977 8999999999999999999999999999999999876543
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.21 E-value=1e-12 Score=130.12 Aligned_cols=56 Identities=25% Similarity=0.426 Sum_probs=53.0
Q ss_pred CCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhh
Q psy3400 298 RKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEK 353 (417)
Q Consensus 298 RRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~K 353 (417)
++.|+.|+..|+..||+.|..++||+..+|++||.+|+|+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34677899999999999999999999999999999999999999999999999986
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.38 E-value=6e-08 Score=67.80 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.4
Q ss_pred CchhcccchhhhhhhccCCCC
Q psy3400 339 EVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 339 ~qVqVWFQNRR~K~KR~~~~~ 359 (417)
+||+|||||||+||||.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999987653
No 79
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=96.25 E-value=0.00056 Score=65.17 Aligned_cols=131 Identities=8% Similarity=0.118 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc--CChhhhhhcchhHH---HHHHhhhcCCCCCCc
Q psy3400 213 LEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ--LSFKNMCKLKPLLQ---KWLEEADSTTGSPTS 287 (417)
Q Consensus 213 le~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq--LS~knm~kLkPlLq---kWLeEae~~~~s~~s 287 (417)
.+.|.+.+|+.|...|+||.+++..+|. ++++|+++|+.. .+...+.++-..|. .||-..+........
T Consensus 28 ~~~~~~~l~~~r~~~g~t~~~la~~~g~------s~~~is~~e~g~~~p~~~~l~~ia~~l~~~~~~l~~~~~~~~~~~~ 101 (311)
T 4ich_A 28 SDELRRRVRGLIHSRPGAQREFAAAIGL------DESKLSKSLNGTRRFSPHELVRIAEHSGVTVNWLINGRDDARTVAA 101 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHHHHHHCCChhhhhcCCCccccccC
Confidence 4578999999999999999999988764 788999998764 34444444433332 244332221111110
Q ss_pred hhHHh--hcCCCCCCCceech-hhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 288 IDKIA--AQGRKRKKRTSIEV-TVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 288 ~~~~~--~~~kkRRkRT~fT~-~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
..... ...++++.|...+. .-+......|.+..|-. -...+||+..|+++..|..+|.|+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~r~~il~aa~~l~~~~G~~~-~T~~~IA~~AGvs~gtlY~yF~sKe~ 166 (311)
T 4ich_A 102 VPAPTARSRSAPAGEPQSEARRRILETAWRLIARRGYHN-VRIHDIASELGTSNATIHYHFPSKKD 166 (311)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred CCCcccccCCCCCccchhhHHHHHHHHHHHHHHHcCCcc-CCHHHHHHHhCCCchhHHHhCCCHHH
Confidence 00101 11111111222222 22334444566555432 34668899999999999999999853
No 80
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=95.57 E-value=0.0076 Score=50.01 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=43.8
Q ss_pred CCCCChHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccCChhh
Q psy3400 205 EDAPTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKN 263 (417)
Q Consensus 205 ~d~~~~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqLS~kn 263 (417)
.+.....-.+.|.+.+|+.|...|+||.+++..+|. ++++|+++|+.+.++..
T Consensus 26 ~~~~~~~l~~~lG~~ir~~R~~~glTQ~eLA~~~gv------s~~~is~~E~G~~~~~~ 78 (101)
T 4ghj_A 26 KHVTAAALAEEIGDRLKQARLNRDLTQSEVAEIAGI------ARKTVLNAEKGKVQLDI 78 (101)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTS------CHHHHHHHHTTCCBHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCC------CHHHHHHHHCCCCCHHH
Confidence 344445667889999999999999999999998764 88999999998766644
No 81
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=93.61 E-value=0.043 Score=44.64 Aligned_cols=52 Identities=25% Similarity=0.232 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc--CChhhhhh
Q psy3400 209 TSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ--LSFKNMCK 266 (417)
Q Consensus 209 ~~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq--LS~knm~k 266 (417)
..+..+.|.+.||+.|...|+||.+++..+|. ++++|+++|+.. .++..+.+
T Consensus 22 ~~~~~~~ig~~lr~~R~~~gltq~elA~~~gi------s~~~is~iE~G~~~ps~~~l~~ 75 (99)
T 3g5g_A 22 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNL------DRTYISGIERNSRNLTIKSLEL 75 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHHTTCSCCBHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHCCCCCCCHHHHHH
Confidence 34667889999999999999999999988764 788999998864 34444433
No 82
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=93.48 E-value=0.059 Score=41.23 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 210 SDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 210 ~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
.++...|...+|+.|...|+||.+++..+|. ++++|+++|+..
T Consensus 9 ~~~~~~~~~~l~~~R~~~gltq~elA~~~gi------s~~~is~~e~g~ 51 (83)
T 3f6w_A 9 NARYQALLDLLLEARSAAGITQKELAARLGR------PQSFVSKTENAE 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHTS------CHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHCCC
Confidence 3567789999999999999999999998864 788999998765
No 83
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=93.37 E-value=0.09 Score=39.97 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 209 TSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 209 ~~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
...+...|...+|..|...|+||.+++..+|. ++++|+++|+...
T Consensus 4 ~~~~~~~~~~~l~~~r~~~glsq~~lA~~~gi------s~~~i~~~e~g~~ 48 (84)
T 2ef8_A 4 HDHRYRCLVQLLTKLRKEASLSQSELAIFLGL------SQSDISKIESFER 48 (84)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHHTTSS
T ss_pred ccHHHHHHHHHHHHHHHHcCCCHHHHHHHhCC------CHHHHHHHHcCCC
Confidence 34678899999999999999999999998864 7889999988653
No 84
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=93.27 E-value=0.048 Score=42.75 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 210 SDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 210 ~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
..+.+.|...+|..|...|+||.+++..+|. ++++|+++|+...
T Consensus 9 ~~~~~~~g~~l~~~R~~~gltq~elA~~~gi------s~~~is~~E~G~~ 52 (86)
T 3eus_A 9 TPEHVYLCQRLRQARLDAGLTQADLAERLDK------PQSFVAKVETRER 52 (86)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCHHHHHHHTTC------CHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHhCc------CHHHHHHHHCCCC
Confidence 4566789999999999999999999988764 8889999988753
No 85
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=93.15 E-value=0.06 Score=41.18 Aligned_cols=50 Identities=24% Similarity=0.227 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc--CChhhhhh
Q psy3400 211 DDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ--LSFKNMCK 266 (417)
Q Consensus 211 ~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq--LS~knm~k 266 (417)
+..+.|.+.+|..|...|+||.+++..+|. ++++|+++|+-. .+...+.+
T Consensus 7 ~~~~~~g~~lk~~R~~~glsq~~lA~~~gi------s~~~i~~~e~g~~~~~~~~l~~ 58 (82)
T 3s8q_A 7 FLLSKVSFVIKKIRLEKGMTQEDLAYKSNL------DRTYISGIERNSRNLTIKSLEL 58 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHHTTCCCCBHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhCc------CHHHHHHHHCCCCCCCHHHHHH
Confidence 456789999999999999999999988764 788999998764 34444433
No 86
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=93.10 E-value=0.049 Score=40.35 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 209 TSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 209 ~~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
+.++++.|.+.+|..|...|+||.+++..+|. ++++|+++|+..
T Consensus 7 ~~~~~~~~~~~l~~~r~~~g~s~~~lA~~~gi------s~~~i~~~e~g~ 50 (74)
T 1y7y_A 7 HYADLVKFGQRLRELRTAKGLSQETLAFLSGL------DRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHCCC
Confidence 34678899999999999999999999998864 677888887654
No 87
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=92.64 E-value=0.1 Score=38.42 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 210 SDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 210 ~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
.+..+.|.+.+|..|...|+||.+++..+|. ..++++|+++|+..
T Consensus 3 ~~~~~~~g~~l~~~r~~~glsq~~lA~~~g~----~is~~~i~~~e~g~ 47 (71)
T 2ewt_A 3 SEYAKQLGAKLRAIRTQQGLSLHGVEEKSQG----RWKAVVVGSYERGD 47 (71)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHTTT----SSCHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCCHHHHHHHHCC----cCCHHHHHHHHCCC
Confidence 3456789999999999999999999988752 24788999998764
No 88
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=92.34 E-value=0.11 Score=42.68 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 211 DDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 211 ~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
+-.+.|.+.||+.|...|+||.+++..+|. ++++|+++|+..
T Consensus 17 ~~~~~~g~~lr~~R~~~gltq~elA~~~gi------s~~~is~~E~G~ 58 (114)
T 3vk0_A 17 DLRAVLAYNMRLFRVNKGWSQEELARQCGL------DRTYVSAVERKR 58 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCC
Confidence 445679999999999999999999998764 788999998765
No 89
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=92.25 E-value=0.14 Score=40.40 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 211 DDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 211 ~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
+..+.|.+.||+.|...|+||.+++..+|. ++++|+++|+-..
T Consensus 5 ~~~~~~~~~lk~~r~~~glsq~~lA~~~gi------s~~~is~~e~G~~ 47 (94)
T 2kpj_A 5 KQKAIFSENLNSYIAKSEKTQLEIAKSIGV------SPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHTC------CHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHhCCC
Confidence 457789999999999999999999998864 7889999987643
No 90
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=92.20 E-value=0.079 Score=40.78 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=37.2
Q ss_pred HHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcc---cCChhhhhhc
Q psy3400 215 AFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEAL---QLSFKNMCKL 267 (417)
Q Consensus 215 ~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~l---qLS~knm~kL 267 (417)
.|...+|..|...|+||.+++..++. ++++|+++|+- ..+...+.+|
T Consensus 10 ~~~~~ik~~R~~~gltq~elA~~~gi------s~~~is~~E~G~~~~p~~~~l~~i 59 (78)
T 3qq6_A 10 MIGQRIKQYRKEKGYSLSELAEKAGV------AKSYLSSIERNLQTNPSIQFLEKV 59 (78)
T ss_dssp THHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHHTTSCCCCBHHHHHHH
T ss_pred CccHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCCCCCCCHHHHHHH
Confidence 48889999999999999999998865 78899999876 3444444443
No 91
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=92.17 E-value=0.087 Score=40.33 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 210 SDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 210 ~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
.++...|...+|+.|...|+||.+++..+|. ++++|+++|+...
T Consensus 7 ~~~~~~l~~~l~~~r~~~gltq~~lA~~~gv------s~~~is~~e~g~~ 50 (80)
T 3kz3_A 7 LEDARRLKAIWEKKKNELGLSYESVADKMGM------GQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHTTS------CHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHhCc------CHHHHHHHHcCCC
Confidence 3556778899999999999999999998875 7889999887654
No 92
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=91.80 E-value=0.068 Score=41.13 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 211 DDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 211 ~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
.....|.+.||..|...|+||.+++..+|. ++++|+++|+..
T Consensus 8 ~~~~~~~~~l~~~r~~~glsq~~lA~~~gi------s~~~i~~~e~g~ 49 (88)
T 2wiu_B 8 YSPTQLANAMKLVRQQNGWTQSELAKKIGI------KQATISNFENNP 49 (88)
T ss_dssp CSHHHHHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHhCC------CHHHHHHHHcCC
Confidence 345678899999999999999999998864 788999998753
No 93
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=91.25 E-value=0.19 Score=38.84 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 209 TSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 209 ~~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
.......|.+.+|..|...|+||.+++..+|. ++++|+++|+..
T Consensus 12 ~~~~~~~~~~~l~~~r~~~glsq~elA~~~gi------s~~~is~~e~g~ 55 (83)
T 2a6c_A 12 HMKMRSQLLIVLQEHLRNSGLTQFKAAELLGV------TQPRVSDLMRGK 55 (83)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCHHHHHHHHTS------CHHHHHHHHTTC
T ss_pred CccccHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCC
Confidence 46677889999999999999999999998865 788999998765
No 94
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.24 E-value=0.05 Score=42.83 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=40.2
Q ss_pred echhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchh
Q psy3400 304 IEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNR 348 (417)
Q Consensus 304 fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNR 348 (417)
.++.-.+.|+.+|.....+....+..|+.+.+|+..+|+-||-.|
T Consensus 13 ~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 445557889999999999999999999999999999999999743
No 95
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=91.14 E-value=0.16 Score=37.87 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 211 DDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 211 ~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
+..+.|.+.+|..|...|+||.+++..+|. ++++|+++|+..
T Consensus 6 ~~~~~~~~~l~~~r~~~glsq~~lA~~~gi------s~~~i~~~e~g~ 47 (77)
T 2b5a_A 6 EIKRKFGRTLKKIRTQKGVSQEELADLAGL------HRTYISEVERGD 47 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCC------CHHHHHHHHCCC
Confidence 345679999999999999999999998864 788999998764
No 96
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=90.85 E-value=0.16 Score=37.97 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 213 LEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 213 le~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
.+.|.+.+|..|...|+||.+++..+|. ++++|+++|+...
T Consensus 5 ~~~~~~~l~~~r~~~g~sq~~lA~~~gi------s~~~i~~~e~g~~ 45 (78)
T 3b7h_A 5 GEFVSEHLMELITQQNLTINRVATLAGL------NQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCCC
Confidence 3568899999999999999999998864 7889999987653
No 97
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=90.52 E-value=0.14 Score=42.92 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 211 DDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 211 ~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
+.+..|.+.||+.|...|+||.+|+..+|. ++++|+++|+-..
T Consensus 3 ~~~~~lG~~Lr~~R~~~glSq~eLA~~~gi------s~~~is~iE~G~~ 45 (112)
T 2wus_R 3 EKWKELGETFRKKREERRITLLDASLFTNI------NPSKLKRIEEGDL 45 (112)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHSSC------CHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHCCCC
Confidence 467789999999999999999999988754 7888999987764
No 98
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=90.51 E-value=0.27 Score=42.41 Aligned_cols=48 Identities=10% Similarity=-0.047 Sum_probs=31.0
Q ss_pred CceechhhHHHHhhhccCCCCCCHHHHHHHHHH-------cCCCCCchhcccchh
Q psy3400 301 RTSIEVTVKGALETHFHKQPKPSAQEITTLADS-------LQLEKEVVRVWFCNR 348 (417)
Q Consensus 301 RT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~-------LgLs~~qVqVWFQNR 348 (417)
+..++.++...|...+..++..+..++...... ..++.++|..|+...
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~ 135 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTK 135 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHH
Confidence 345677777777777776777777665443222 246778888887643
No 99
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=89.73 E-value=0.28 Score=38.09 Aligned_cols=42 Identities=17% Similarity=0.303 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 211 DDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 211 ~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
...+.|.+.+|..|...|+||.+++..+|. ++++|+++|+..
T Consensus 13 ~~~~~l~~~l~~~R~~~glsq~~lA~~~gi------s~~~is~~e~g~ 54 (92)
T 1lmb_3 13 EDARRLKAIYEKKKNELGLSQESVADKMGM------GQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHTS------CHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCC
Confidence 344567777788889999999999998864 788999998764
No 100
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=89.63 E-value=0.24 Score=41.80 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 213 LEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 213 le~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
...|...+|..|...|+||.+++..+|. +|++|+++|+...
T Consensus 38 ~~~lg~~L~~~R~~~glTQ~eLA~~lGi------s~~~Is~iE~G~~ 78 (120)
T 2o38_A 38 KLRLAYALNAVIDRARLSQAAAAARLGI------NQPKVSALRNYKL 78 (120)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCCC
Confidence 4568899999999999999999998864 8899999998654
No 101
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=89.18 E-value=0.076 Score=38.53 Aligned_cols=39 Identities=28% Similarity=0.489 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 214 EAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 214 e~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
+.|.+.+|..|...|+||.+++..+|. ++++|+++|+-.
T Consensus 4 ~~~~~~l~~~r~~~g~s~~~lA~~~gi------s~~~i~~~e~g~ 42 (68)
T 2r1j_L 4 QLMGERIRARRKKLKIRQAALGKMVGV------SNVAISQWERSE 42 (68)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTS------CHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCC------CHHHHHHHHcCC
Confidence 457888999999999999999998864 677888887654
No 102
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=89.00 E-value=0.17 Score=37.04 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=32.6
Q ss_pred HHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 215 AFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 215 ~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
.|.+.+|..|...|+||.+++..+|. ++++|+++|+-..
T Consensus 3 ~~~~~l~~~r~~~glsq~~lA~~~gi------s~~~i~~~e~g~~ 41 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATKAGV------KQQSIQLIEAGVT 41 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHTS------CHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCC------CHHHHHHHHcCCC
Confidence 47888999999999999999988764 7788888877643
No 103
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=88.80 E-value=0.18 Score=41.94 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 211 DDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 211 ~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
.++..|.+.+|..|...|+||.+++..+|. ++++|+++|+..
T Consensus 8 ~~~~~~g~~lk~~R~~~glsq~~lA~~~gi------s~~~is~~E~g~ 49 (126)
T 3ivp_A 8 YDFRALGLAIKEARKKQGLTREQVGAMIEI------DPRYLTNIENKG 49 (126)
T ss_dssp CCTHHHHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHHHcCCCHHHHHHHhCc------CHHHHHHHHCCC
Confidence 346678999999999999999999988764 788999998765
No 104
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=88.74 E-value=0.61 Score=37.22 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=31.3
Q ss_pred HHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcc
Q psy3400 216 FAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEAL 257 (417)
Q Consensus 216 Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~l 257 (417)
|.+.+|..|...|+||.+++..+|. ++++|+++|+.
T Consensus 2 ~~~~l~~~r~~~gltq~~lA~~~gi------s~~~i~~~e~g 37 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAGV------AKSYLSSIERN 37 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHHTT
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcC
Confidence 5678899999999999999998864 78899999876
No 105
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=88.71 E-value=0.2 Score=38.08 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=30.4
Q ss_pred HHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 217 AKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 217 ak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
...+|+.|..+|+||.+++..+|. ++++|+++|+-..
T Consensus 13 g~~lr~~R~~~gltq~elA~~~gv------s~~tis~~E~G~~ 49 (73)
T 3fmy_A 13 PEFIVKVRKKLSLTQKEASEIFGG------GVNAFSRYEKGNA 49 (73)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCS------CTTHHHHHHTTSS
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCc------CHHHHHHHHcCCC
Confidence 355677799999999999998864 7889999998753
No 106
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=88.46 E-value=0.22 Score=37.63 Aligned_cols=38 Identities=26% Similarity=0.534 Sum_probs=32.3
Q ss_pred HHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 216 FAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 216 Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
|.+.||..|...|+||.+++..+|. ++++|+++|+...
T Consensus 3 ~~~~lk~~r~~~glsq~~lA~~~gi------s~~~i~~~e~g~~ 40 (77)
T 2k9q_A 3 LSNELKVERIRLSLTAKSVAEEMGI------SRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTS------CHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCC------CHHHHHHHHcCCC
Confidence 6778999999999999999988764 7788999987653
No 107
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=88.30 E-value=0.2 Score=36.40 Aligned_cols=38 Identities=32% Similarity=0.540 Sum_probs=31.7
Q ss_pred HHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 216 FAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 216 Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
|.+.+|..|...|+||.+++..+|. ++++|+++|+-..
T Consensus 2 ~~~~l~~~r~~~glsq~~lA~~~gi------s~~~i~~~e~g~~ 39 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVGT------TQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTS------CHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCCC
Confidence 6788999999999999999988764 6778888876653
No 108
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=88.08 E-value=0.15 Score=40.82 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=32.2
Q ss_pred HHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 215 AFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 215 ~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
.|.+.+|..|...|+||.+++..+|. ++++|+++|+-..
T Consensus 30 ~~~~~lk~~R~~~glsq~elA~~lgv------s~~~is~~E~G~~ 68 (99)
T 2ppx_A 30 PRMPRIKIIRRALKLTQEEFSARYHI------PLGTLRDWEQGRS 68 (99)
T ss_dssp --CCHHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCc------CHHHHHHHHcCCC
Confidence 57888999999999999999998864 7889999987653
No 109
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=87.88 E-value=0.3 Score=38.04 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=32.9
Q ss_pred HHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 215 AFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 215 ~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
.|.+.||..|...|+||.+++..++. ++++|+++|+-.
T Consensus 13 ~~~~~l~~~r~~~glsq~~lA~~~gi------s~~~is~~e~g~ 50 (91)
T 1x57_A 13 EVGKVIQQGRQSKGLTQKDLATKINE------KPQVIADYESGR 50 (91)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTS------CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCC
Confidence 48888999999999999999998864 788999998764
No 110
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=87.71 E-value=0.34 Score=39.56 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc--CChhhhhh
Q psy3400 211 DDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ--LSFKNMCK 266 (417)
Q Consensus 211 ~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq--LS~knm~k 266 (417)
.-.+.|...+|..|...|+||.+++..+|. ++++|+++|+.. .+...+.+
T Consensus 24 ~~~~~~g~~l~~~R~~~glsq~~lA~~~gi------s~~~is~~E~g~~~~~~~~l~~ 75 (117)
T 3f52_A 24 LLREALGAALRSFRADKGVTLRELAEASRV------SPGYLSELERGRKEVSSELLAS 75 (117)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHTTS------CHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHCCCCCCCHHHHHH
Confidence 345689999999999999999999988764 788999998765 34444444
No 111
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=87.40 E-value=0.24 Score=36.67 Aligned_cols=39 Identities=28% Similarity=0.489 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 214 EAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 214 e~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
+.|.+.+|+.|...|+||.+++..+|. ++++|+++|+-.
T Consensus 4 ~~~~~~l~~~r~~~gls~~~lA~~~gi------s~~~i~~~e~g~ 42 (76)
T 1adr_A 4 QLMGERIRARRKKLKIRQAALGKMVGV------SNVAISQWERSE 42 (76)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTS------CHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCC
Confidence 357888999999999999999998864 778888887754
No 112
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=86.94 E-value=0.39 Score=42.50 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC--Chhhhhh
Q psy3400 211 DDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL--SFKNMCK 266 (417)
Q Consensus 211 ~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL--S~knm~k 266 (417)
+-...|.+.||+.|...|+||.+++..++. ++++|+++|+-.. +...+.+
T Consensus 7 ~~~~~~~~~l~~~r~~~gltq~~lA~~~gi------s~~~is~~e~g~~~p~~~~l~~ 58 (192)
T 1y9q_A 7 MFKSQIANQLKNLRKSRGLSLDATAQLTGV------SKAMLGQIERGESSPTIATLWK 58 (192)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHSS------CHHHHHHHHTTCSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCCCCCCHHHHHH
Confidence 445679999999999999999999988764 7889999987643 3344443
No 113
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=86.27 E-value=0.29 Score=40.01 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhhh--hhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 212 DLEAFAKQFKQRRI--KLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 212 ele~Fak~fK~rRI--~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
....|.+.||..|. ..|+||.+++..+|. ++++|+++|+-.
T Consensus 31 ~~~~~g~~lk~~R~~~~~glsq~elA~~~gi------s~~~is~~E~G~ 73 (107)
T 2jvl_A 31 VGKEVGKAIEQGRQKFEPTMTQAELGKEIGE------TAATVASYERGT 73 (107)
T ss_dssp CCHHHHHHHHHHHTTSSSCCCHHHHHHHHTC------CHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCC
Confidence 34568889999999 999999999998864 778999998764
No 114
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=86.14 E-value=0.15 Score=41.04 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=30.3
Q ss_pred HHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 216 FAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 216 Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
+.+.||+.|...|+||.+++..+|. ++++|+++|+-.
T Consensus 25 ~~~rLk~lR~~~glTq~eLA~~~Gi------S~~tis~iE~G~ 61 (88)
T 3t76_A 25 SYNKLWKLLIDRDMKKGELREAVGV------SKSTFAKLGKNE 61 (88)
T ss_dssp ECHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCC
Confidence 3356788899999999999998865 788999998764
No 115
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=86.01 E-value=0.43 Score=42.25 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 210 SDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 210 ~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
.+....|.+.+|+.|...|+||.+++..+|. ++++|+++|+-..
T Consensus 5 ~~~~~~~g~~l~~~r~~~g~s~~~la~~~gi------s~~~ls~~e~g~~ 48 (198)
T 2bnm_A 5 KTASTGFAELLKDRREQVKMDHAALASLLGE------TPETVAAWENGEG 48 (198)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCCC
Confidence 3456789999999999999999999998764 7889999988654
No 116
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=85.90 E-value=0.51 Score=39.45 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=46.3
Q ss_pred CCCChHHHHHHHHHHHhhh-hhhc-cchhhhhhhhhcccccccccccccchhcccCChhhhhhcchhHHHHHHhh
Q psy3400 206 DAPTSDDLEAFAKQFKQRR-IKLG-FTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEA 278 (417)
Q Consensus 206 d~~~~~ele~Fak~fK~rR-I~lG-~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqLS~knm~kLkPlLqkWLeEa 278 (417)
+..|.+|.+.++..|.-.+ +.-| .||.+|...+|. |++||+|.. +...++.+.++.||++.
T Consensus 34 ~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGi------S~stISRi~------r~L~~l~~~~k~~l~~~ 96 (101)
T 1jhg_A 34 LMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGA------GIATITRGS------NSLKAAPVELRQWLEEV 96 (101)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCC------CHHHHHHHH------HHHHHSCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCC------ChhhhhHHH------HHHHHccHHHHHHHHHH
Confidence 4567788888877777654 3346 999999999877 899999973 34566788888998764
No 117
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=85.67 E-value=0.44 Score=38.72 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=33.2
Q ss_pred HHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 215 AFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 215 ~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
.|.+.+|..|...|+||.+++..+|. ++++|+++|+..
T Consensus 9 ~~~~~l~~~r~~~glsq~~lA~~~gi------s~~~i~~~e~g~ 46 (114)
T 3op9_A 9 QFAENLSRLKKEHGLKNHQIAELLNV------QTRTVAYYMSGE 46 (114)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTS------CHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCC
Confidence 48888999999999999999998864 888999998764
No 118
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=85.32 E-value=0.63 Score=36.68 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=33.5
Q ss_pred CCCCCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchh
Q psy3400 296 RKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNR 348 (417)
Q Consensus 296 kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNR 348 (417)
++|+.+..|+.+++......+. .. ....+||+.+|++..+|..|....
T Consensus 15 ~~~~~~~~ys~e~k~~~v~~~~-~g----~s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 15 KGKRPLRSLTPRDKIHAIQRIH-DG----ESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp CCSSCCSSCCHHHHHHHHHHHH-HT----CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHH-CC----CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3445566788887665555553 22 125688999999999999997543
No 119
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=84.04 E-value=0.071 Score=44.14 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 214 EAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 214 e~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
..|.+.+|..|...|+||.+++..+|. ++++|+++|+..
T Consensus 22 ~~~g~~Lk~~R~~~gltq~elA~~~gi------s~~~is~~E~G~ 60 (111)
T 3mlf_A 22 SNAMKTLKELRTDYGLTQKELGDLFKV------SSRTIQNMEKDS 60 (111)
T ss_dssp CSSCEEHHHHHHHTTCCHHHHHHHHTS------CHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHCCC
Confidence 345667899999999999999998764 788999998864
No 120
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=83.38 E-value=0.41 Score=37.61 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=31.2
Q ss_pred HHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 216 FAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 216 Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
|.+.+|..|...|+||.+++..+|. ++++|+++|+-.
T Consensus 5 ~~~~l~~~r~~~gltq~~lA~~~gi------s~~~is~~e~g~ 41 (99)
T 2l49_A 5 ISEKIVLMRKSEYLSRQQLADLTGV------PYGTLSYYESGR 41 (99)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHCC------CHHHHHHHTTTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCC
Confidence 5677899999999999999988764 788899998764
No 121
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=83.36 E-value=0.3 Score=41.55 Aligned_cols=40 Identities=20% Similarity=0.386 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 214 EAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 214 e~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
+.|.+.+|+.|...|+||.+++..++. ++++|+++|+-+.
T Consensus 2 ~~~G~~lr~~R~~~gltq~elA~~~gi------s~~~is~iE~g~~ 41 (130)
T 3fym_A 2 KTVGEALKGRRERLGMTLTELEQRTGI------KREMLVHIENNEF 41 (130)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHCC------CHHHHHHHHTTCG
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHCCCC
Confidence 357888999999999999999998765 7889999988774
No 122
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=82.59 E-value=0.81 Score=38.26 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=29.3
Q ss_pred HHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 219 QFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 219 ~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
+|+..|..+|+||.+++..+|. +++||+++|+-..
T Consensus 75 ~l~~~R~~~glsq~~la~~~g~------s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 75 FIVKVRKKLSLTQKEASEIFGG------GVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHHTTCCHHHHHHHHCS------CTTHHHHHHHTSS
T ss_pred HHHHHHHHcCCCHHHHHHHHCC------CHHHHHHHHCCCC
Confidence 4677788999999999998864 7889999998754
No 123
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=82.55 E-value=0.54 Score=37.28 Aligned_cols=37 Identities=19% Similarity=0.522 Sum_probs=31.3
Q ss_pred HHHHHHhhhhhhccchhhhhhhhhccccccccccc----ccchhccc
Q psy3400 216 FAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTT----ICRFEALQ 258 (417)
Q Consensus 216 Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtT----I~RFE~lq 258 (417)
|...+|..|...|+||.+++..+|. ++++ |+++|+..
T Consensus 2 ~g~~lk~~R~~~glsq~~lA~~~gi------s~~~~~~~is~~E~g~ 42 (98)
T 3lfp_A 2 LIRRLKDARLRAGISQEKLGVLAGI------DEASASARMNQYEKGK 42 (98)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHTTC------CHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCC------CcchhhhHHHHHHCCC
Confidence 5678899999999999999998764 7778 99998774
No 124
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=82.15 E-value=0.35 Score=41.80 Aligned_cols=48 Identities=35% Similarity=0.447 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc--CChhhhhh
Q psy3400 213 LEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ--LSFKNMCK 266 (417)
Q Consensus 213 le~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq--LS~knm~k 266 (417)
+..|...+++.|...|+||.+++..+|. ++++|+++|+.. .++..+.+
T Consensus 66 ~~~~g~~L~~~R~~~glTq~elA~~lGi------s~s~is~~E~G~~~ps~~~l~~ 115 (141)
T 3kxa_A 66 LKAGGETFVSLRMKKGFTQSELATAAGL------PQPYLSRIENSKQSLQDKTVQK 115 (141)
T ss_dssp HHHSSCCHHHHHHHTTCCHHHHHHHTTC------CHHHHHHHHHTCSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCCCCCCHHHHHH
Confidence 3334456677899999999999988764 888999998864 44444443
No 125
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=81.21 E-value=1.2 Score=35.75 Aligned_cols=46 Identities=9% Similarity=-0.026 Sum_probs=30.0
Q ss_pred ceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCC-------CCCchhcccch
Q psy3400 302 TSIEVTVKGALETHFHKQPKPSAQEITTLADSLQL-------EKEVVRVWFCN 347 (417)
Q Consensus 302 T~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgL-------s~~qVqVWFQN 347 (417)
..++.++...+......++..+..++.....+.|+ +.++|..|+..
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 35677778888888777777777665443323264 77888888753
No 126
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=80.53 E-value=0.77 Score=38.06 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=38.6
Q ss_pred CCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 299 KKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 299 RkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
++|..||.+++..+...+..+...+. .+||+.+|++..+|..|..+++.
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 35778999999888877755555443 36899999999999999988765
No 127
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=80.49 E-value=0.99 Score=36.02 Aligned_cols=38 Identities=21% Similarity=0.088 Sum_probs=31.2
Q ss_pred HHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 215 AFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 215 ~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
.|...++..|...|+||.+++..+|. ++++|+++|+..
T Consensus 18 ~~g~~l~~~r~~~gltq~~lA~~~gi------s~~~is~~e~g~ 55 (104)
T 3cec_A 18 HPGEVIADILDDLDINTANFAEILGV------SNQTIQEVINGQ 55 (104)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTS------CHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCC
Confidence 35566788899999999999998864 788999998764
No 128
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=79.63 E-value=0.88 Score=33.76 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=29.6
Q ss_pred HHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 217 AKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 217 ak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
.+.+|..|...|+||.+++..+|. ++++|+++|+..
T Consensus 10 ~~~l~~~r~~~glsq~~lA~~~gi------s~~~is~~e~g~ 45 (73)
T 3omt_A 10 FNRLKSVLAEKGKTNLWLTETLDK------NKTTVSKWCTND 45 (73)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHTTC------CHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCC
Confidence 345788888999999999998764 788999998764
No 129
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=76.71 E-value=0.26 Score=35.38 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=28.0
Q ss_pred HHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 218 KQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 218 k~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
+.+|..|...|+||.+++..+|. ++++|+++|+-.
T Consensus 4 ~~l~~~r~~~g~s~~~lA~~~gi------s~~~i~~~e~g~ 38 (66)
T 2xi8_A 4 NNLKLIREKKKISQSELAALLEV------SRQTINGIEKNK 38 (66)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHTS------CHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCC
Confidence 45788889999999999988864 677888887654
No 130
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=76.45 E-value=1.8 Score=35.10 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=36.8
Q ss_pred HhhhhhhccchhhhhhhhhcccccccccccccchhcccCChhhhhhcchhHHHHHHhhhcC
Q psy3400 221 KQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADST 281 (417)
Q Consensus 221 K~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqLS~knm~kLkPlLqkWLeEae~~ 281 (417)
|.++|..|++|.+++..+|. +|+||+.+|+-...+.--.++--.|..|+.+-...
T Consensus 25 kLK~il~GikQ~eLAK~iGI------sqsTLSaIenG~~~PsL~~kIAk~fg~w~~~~~~~ 79 (83)
T 2l1p_A 25 ALKDLLKDMNQSSLAKECPL------SQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKKT 79 (83)
T ss_dssp HHHHHHTTSCHHHHHHHSSS------CHHHHHHHHTCSSCCCCCSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCHHHHHHHcCC------CHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHh
Confidence 34444449999999988765 88999998876642211134445788899876543
No 131
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=76.44 E-value=0.74 Score=33.60 Aligned_cols=48 Identities=8% Similarity=0.171 Sum_probs=32.0
Q ss_pred CceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhh
Q psy3400 301 RTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 301 RT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR 349 (417)
|..|+.+++..+...+.. .........++|.++|++..+|+.|....+
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 445888877766444432 222122366899999999999999965443
No 132
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=74.83 E-value=1.5 Score=35.33 Aligned_cols=37 Identities=5% Similarity=-0.030 Sum_probs=31.3
Q ss_pred HHHHHHh-hhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 216 FAKQFKQ-RRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 216 Fak~fK~-rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
|...++. .|...|+||.+++..+|. ++++|+++|...
T Consensus 11 ~g~~l~~~~r~~~glsq~~lA~~~gi------s~~~is~~e~g~ 48 (113)
T 2eby_A 11 PGDILLYEYLEPLDLKINELAELLHV------HRNSVSALINNN 48 (113)
T ss_dssp HHHHHHHHTTTTTTCCHHHHHHHHTS------CHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCC
Confidence 6777887 899999999999998865 788999998764
No 133
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=74.60 E-value=0.92 Score=38.02 Aligned_cols=69 Identities=12% Similarity=0.205 Sum_probs=37.0
Q ss_pred CCCCCChHHHHHHHHHHHhhhhhhc-cchhhhhhhhhccccccccc-ccccchhcccCChhhhhhcchhHHHHHHhhhc
Q psy3400 204 EEDAPTSDDLEAFAKQFKQRRIKLG-FTQADVGLALGTLYGNVFSQ-TTICRFEALQLSFKNMCKLKPLLQKWLEEADS 280 (417)
Q Consensus 204 ~~d~~~~~ele~Fak~fK~rRI~lG-~TQ~dVg~aLg~l~g~~~SQ-tTI~RFE~lqLS~knm~kLkPlLqkWLeEae~ 280 (417)
.+|+ |.+-.++...+||..-|... |....+++..|.|....... ..+..+......|..|.. ||..++.
T Consensus 15 ~~~i-Tk~I~~~Ik~~Lk~~~isQ~~FA~~VL~rsQgtLs~lLr~P~kPW~~L~~Gre~f~RM~n-------WL~l~e~ 85 (101)
T 1wiz_A 15 SVEV-SPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEEDPRTASQSLLVNLRAMQN-------FLNLPEV 85 (101)
T ss_dssp SCCC-CTTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHTCCCTTTCCHHHHHHHHHHHH-------HTTSCHH
T ss_pred hhHh-hHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhHHHHHHcCCCCCHHHHHHHHHHHHHHHH-------HhcCCHH
Confidence 4455 77777777777777666544 44444444444443333334 244444444444444444 8876653
No 134
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=74.40 E-value=3.2 Score=35.68 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=42.2
Q ss_pred CCCCceechhhHHHHhhhc-cCCCCCCHHHHHHHH-HHc--CCCCCchhcccchhhh
Q psy3400 298 RKKRTSIEVTVKGALETHF-HKQPKPSAQEITTLA-DSL--QLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 298 RRkRT~fT~~Ql~~LE~~F-~~n~yPS~~er~eLA-~~L--gLs~~qVqVWFQNRR~ 350 (417)
+++|.++|.+|+..|..++ ..++..+..++...| .++ +++..+|..|..|+..
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 5689999999999999999 788888877655532 266 7899999999877543
No 135
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=74.08 E-value=0.36 Score=42.58 Aligned_cols=31 Identities=6% Similarity=0.027 Sum_probs=22.4
Q ss_pred CCCCCCCceechhhHHHHhhhccCCCCCCHH
Q psy3400 295 GRKRKKRTSIEVTVKGALETHFHKQPKPSAQ 325 (417)
Q Consensus 295 ~kkRRkRT~fT~~Ql~~LE~~F~~n~yPS~~ 325 (417)
.+.||.||.|+..|++.|+..|..++||...
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 3567899999999999999999999999753
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=74.04 E-value=1 Score=41.22 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 214 EAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 214 e~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
..|...||+.|...|+||.+++..+ .|+++|+++|+...
T Consensus 4 ~~~g~~i~~~r~~~~~tq~~la~~~-------~s~~~is~~e~g~~ 42 (293)
T 2qfc_A 4 EKLGSEIKKIRVLRGLTQKQLSENI-------CHQSEVSRIESGAV 42 (293)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTTTTT-------SCHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH-------cCHHHHHHHHCCCC
Confidence 5688899999999999999998654 47889999987654
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=74.03 E-value=1.3 Score=40.50 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 214 EAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 214 e~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
+.|.+.+|+.|...|+||.+++..+ .++++|+++|+...
T Consensus 4 ~~~g~~i~~~R~~~~~tq~~la~~~-------~s~~~~s~~e~g~~ 42 (293)
T 3u3w_A 4 EKLGSEIKKIRVLRGLTQKQLSENI-------CHQSEVSRIESGAV 42 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTT-------SCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHh-------CCHHHHHHHHCCCC
Confidence 4688899999999999999999754 48899999988753
No 138
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=74.03 E-value=2.2 Score=32.45 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 210 SDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 210 ~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
.+..+.|.+.+|..|... ||.+++..+|. ++++|+++|+...
T Consensus 11 ~~~~~~~g~~l~~~R~~~--sq~~lA~~~gi------s~~~is~~E~g~~ 52 (86)
T 2ofy_A 11 LERGQRLGELLRSARGDM--SMVTVAFDAGI------SVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHHHHHHHHTTS--CHHHHHHHHTC------CHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHC--CHHHHHHHhCC------CHHHHHHHHcCCC
Confidence 344566888898888877 99999988764 7889999988653
No 139
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=73.77 E-value=4.4 Score=33.24 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=29.0
Q ss_pred eechhhHHHHhhhccCCCCCCHHHHHHHHHHcC--CCCCchhcccchhhh
Q psy3400 303 SIEVTVKGALETHFHKQPKPSAQEITTLADSLQ--LEKEVVRVWFCNRRQ 350 (417)
Q Consensus 303 ~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~Lg--Ls~~qVqVWFQNRR~ 350 (417)
.++.++...+... ..++..+.. +|+..|| ++.++|..|+.....
T Consensus 60 ~l~~~~~~~i~~~-~~~~~~s~~---~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRA-ASNSCKTAR---DIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHH-HHHCCCCHH---HHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHH-HhCCCCCHH---HHHHHHCCCccHHHHHHHHHHCCC
Confidence 3677776666655 444555554 5777788 788899999875544
No 140
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=73.31 E-value=0.94 Score=30.78 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=27.8
Q ss_pred echhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 304 IEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 304 fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
++.+++..+...+... . ...+||+.+|++..+|..|+.....
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHccc
Confidence 4455555444444432 2 3568899999999999999975443
No 141
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=72.17 E-value=2 Score=33.47 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=30.1
Q ss_pred HHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 216 FAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 216 Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
|.+.|+..|...|+||.+++..+|. ++++|+++|+..
T Consensus 9 ~g~~l~~~r~~~gltq~~lA~~~gi------s~~~is~~e~g~ 45 (94)
T 2ict_A 9 PGDIIQESLDELNVSLREFARAMEI------APSTASRLLTGK 45 (94)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTC------CHHHHHHHHHTS
T ss_pred hhHHHHHHHHHcCCCHHHHHHHhCC------CHHHHHHHHcCC
Confidence 5667888899999999999998864 677888887654
No 142
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=71.86 E-value=1.4 Score=40.04 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=35.8
Q ss_pred CChHHHHHHHH---------HHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 208 PTSDDLEAFAK---------QFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 208 ~~~~ele~Fak---------~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
.+.++|-..++ .||..|...|+||.++...||. +|++|+++|+-.
T Consensus 74 iaPd~LY~~~~~~~~~~s~~~lk~lR~~~glTQ~elA~~LGv------sr~tis~yE~G~ 127 (170)
T 2auw_A 74 FGRDNVYAWAKEQAGEVSHEMFGDWMHRNNLSLTTAAEALGI------SRRMVSYYRTAH 127 (170)
T ss_dssp BCHHHHHHHHHHHTTCCCHHHHHHHHHHTTCCHHHHHHHHTS------CHHHHHHHHTTS
T ss_pred CCHHHHHHhhhhhccCCCcHHHHHHHHHcCCCHHHHHHHhCC------CHHHHHHHHcCC
Confidence 66666644332 5788899999999999999876 889999999865
No 143
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=71.82 E-value=0.49 Score=35.05 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=29.5
Q ss_pred HHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 216 FAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 216 Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
|.+.+|..|...|+||.+++..+|. ++++|+++|+..
T Consensus 11 ~~~~l~~~r~~~g~s~~~lA~~~gi------s~~~i~~~e~g~ 47 (76)
T 3bs3_A 11 MLNRIKVVLAEKQRTNRWLAEQMGK------SENTISRWCSNK 47 (76)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHHTC------CHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCC
Confidence 5667888899999999999998864 677888877643
No 144
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=71.81 E-value=2.3 Score=38.48 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 213 LEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 213 le~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
+..|.+.+|+.|...|+||.+++..+|. ++++|+++|+..
T Consensus 15 ~~~~~~~l~~~r~~~g~t~~~lA~~~gi------s~~~i~~~~~g~ 54 (236)
T 3bdn_A 15 ARRLKAIYEKKKNELGLSQESVADKMGM------GQSGVGALFNGI 54 (236)
T ss_dssp HHHHHHHHHHHTTTTTCCSHHHHHHHTS------CHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCC
Confidence 4478999999999999999999998764 788888887753
No 145
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=70.30 E-value=2.1 Score=36.14 Aligned_cols=48 Identities=10% Similarity=-0.012 Sum_probs=30.7
Q ss_pred CceechhhHHHHhhhccCCCCCCHHHHHHHH-HHc----C--CCCCchhcccchh
Q psy3400 301 RTSIEVTVKGALETHFHKQPKPSAQEITTLA-DSL----Q--LEKEVVRVWFCNR 348 (417)
Q Consensus 301 RT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA-~~L----g--Ls~~qVqVWFQNR 348 (417)
+..++.++...+...+..++..+..++.... .+. + ++.++|..|+..+
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 3456777788888877777767766544322 211 4 6778888887543
No 146
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=69.91 E-value=1.6 Score=36.55 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=30.0
Q ss_pred CCCCCChHHHHHHHHHHHhhhhhhccchhhhh-----hhhhcccccccccccccchh-cccCChhhhhhcchhHHHHHHh
Q psy3400 204 EEDAPTSDDLEAFAKQFKQRRIKLGFTQADVG-----LALGTLYGNVFSQTTICRFE-ALQLSFKNMCKLKPLLQKWLEE 277 (417)
Q Consensus 204 ~~d~~~~~ele~Fak~fK~rRI~lG~TQ~dVg-----~aLg~l~g~~~SQtTI~RFE-~lqLS~knm~kLkPlLqkWLeE 277 (417)
+++..|.+-..++-..|+...| +|+.++ +..|++....-....+..+. .....|..|.. ||++
T Consensus 14 ~~~ldTk~I~~~ike~L~~~~i----sQ~~FA~~VLgrsQgtlS~lL~~PkpW~~L~~~Gre~yiRM~n-------WL~~ 82 (101)
T 1x2l_A 14 EEQLDTAEIAFQVKEQLLKHNI----GQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQ-------FLSD 82 (101)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTC----CHHHHHHHTTCSCHHHHHHHHHCCCCGGGCCHHHHHHHHHHHH-------HHTC
T ss_pred cCccCHHHHHHHHHHHHHHcCC----CHHHHHHHHHccccchHHHHhcCCCCHHHHhHhhhHHHHHHHH-------HccC
Confidence 4444555555555555555554 665544 33333332222233333332 33344444444 9986
Q ss_pred hh
Q psy3400 278 AD 279 (417)
Q Consensus 278 ae 279 (417)
.+
T Consensus 83 ~e 84 (101)
T 1x2l_A 83 EQ 84 (101)
T ss_dssp TH
T ss_pred HH
Confidence 43
No 147
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=69.69 E-value=1.6 Score=31.86 Aligned_cols=50 Identities=10% Similarity=-0.053 Sum_probs=37.3
Q ss_pred eechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCC
Q psy3400 303 SIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTP 357 (417)
Q Consensus 303 ~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~ 357 (417)
.++..++.+|...|... ....+||..+|++...|+.+....|.|.|+...
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~ 64 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLADAE 64 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC---
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 36777888887765433 235689999999999999999988888887654
No 148
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=69.45 E-value=2.4 Score=33.80 Aligned_cols=51 Identities=12% Similarity=0.044 Sum_probs=39.4
Q ss_pred eechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 303 SIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 303 ~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
.++..++.+|...+.-. ...+||+.|++++.+|+.+..+-|.|.+......
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~ 77 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQ 77 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHH
Confidence 47888888888764332 2468999999999999999998888887765443
No 149
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=69.13 E-value=2.8 Score=34.24 Aligned_cols=45 Identities=4% Similarity=0.032 Sum_probs=33.1
Q ss_pred HHHHHh-hhhhhccchhhhhhhhhcccccccccccccchhccc--CChhhhhhc
Q psy3400 217 AKQFKQ-RRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ--LSFKNMCKL 267 (417)
Q Consensus 217 ak~fK~-rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq--LS~knm~kL 267 (417)
-..||+ .|...|+||.+++..+|. ++++|+++|+.. ++...+.+|
T Consensus 15 G~~Lk~~lr~~~gltq~eLA~~lGi------s~~~is~ie~G~~~~s~~~~~kl 62 (104)
T 3trb_A 15 GEILAEELGFLDKMSANQLAKHLAI------PTNRVTAILNGARSITADTALRL 62 (104)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHTS------CHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHcCCCCCCHHHHHHH
Confidence 345675 588889999999998865 888999998764 444444443
No 150
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=68.77 E-value=2 Score=33.80 Aligned_cols=48 Identities=6% Similarity=0.122 Sum_probs=37.3
Q ss_pred echhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccC
Q psy3400 304 IEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMT 356 (417)
Q Consensus 304 fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~ 356 (417)
++..++.+|...|...- ...+||..||++..+|+++...-|.|.|+..
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 56777778877553332 3678999999999999999998888887754
No 151
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=67.61 E-value=1.9 Score=42.04 Aligned_cols=40 Identities=25% Similarity=0.150 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhhh------hccchhhhhhhhhcccccccccccccchhccc
Q psy3400 213 LEAFAKQFKQRRIK------LGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 213 le~Fak~fK~rRI~------lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
...|.+.+|..|.. .|+||.+|+..+|. |+++|+++|+..
T Consensus 4 ~~~lG~~Lr~lR~~~~~~~~~gLtqeelA~~~gv------S~~~is~iE~G~ 49 (292)
T 3pxp_A 4 RAAFGKLVQALRREHRDEKGRVWTQEVLAERTQL------PKRTIERIENGS 49 (292)
T ss_dssp HHHHHHHHHHHHHTCBCTTSCBCCHHHHHHHHTC------CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHccCccCcCCCCHHHHHHHHCc------CHHHHHHHHCCC
Confidence 35678889999999 99999999988764 888999998765
No 152
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=65.80 E-value=2.2 Score=28.30 Aligned_cols=40 Identities=10% Similarity=0.243 Sum_probs=26.9
Q ss_pred eechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccch
Q psy3400 303 SIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCN 347 (417)
Q Consensus 303 ~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQN 347 (417)
.++.+++..+...+... . ...+||+.|+++..+|+.|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 35565554444444332 2 2568899999999999999753
No 153
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=65.65 E-value=3.6 Score=31.86 Aligned_cols=49 Identities=14% Similarity=0.090 Sum_probs=37.3
Q ss_pred CceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 301 RTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 301 RT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
-..++..++.+|...+.- ....+||+.|++++.+|+.+..+-+.|.+..
T Consensus 19 ~~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GGGSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred HccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 345788888888874322 2456899999999999999988777776654
No 154
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=64.97 E-value=1.3 Score=38.24 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 216 FAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 216 Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
|.+.+|+.|...|+||.+++..+|. |+++++++|+-.
T Consensus 2 ig~~lk~~R~~~gltq~elA~~lgi------s~~~vs~~e~G~ 38 (158)
T 2p5t_A 2 IGKNIKSLRKTHDLTQLEFARIVGI------SRNSLSRYENGT 38 (158)
T ss_dssp -------------------------------------------
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCc------CHHHHHHHHCCC
Confidence 5677899999999999999988764 778888887654
No 155
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=63.03 E-value=5.3 Score=29.43 Aligned_cols=54 Identities=9% Similarity=0.146 Sum_probs=38.9
Q ss_pred eechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCC
Q psy3400 303 SIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTP 357 (417)
Q Consensus 303 ~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~ 357 (417)
.++..++.+|...|-.+.+ ......+||+.+|+++.+|+.+...-+.|.|+...
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888732111 11235689999999999999998888888776543
No 156
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=62.75 E-value=2 Score=35.89 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhhhhccchhhhhh-----hhhcccccccccccccchh-cccCChhhhhhcchhHHHHHHhhhcCCCC
Q psy3400 213 LEAFAKQFKQRRIKLGFTQADVGL-----ALGTLYGNVFSQTTICRFE-ALQLSFKNMCKLKPLLQKWLEEADSTTGS 284 (417)
Q Consensus 213 le~Fak~fK~rRI~lG~TQ~dVg~-----aLg~l~g~~~SQtTI~RFE-~lqLS~knm~kLkPlLqkWLeEae~~~~s 284 (417)
.+++|.++|+....-+++|..++. ..+++.........+..+. +.+..|..|. .||+..+.....
T Consensus 19 Tk~I~~~ike~L~~~~isQ~~FA~~ILgrsqgtlSdlL~~PKpW~~L~~~Gre~fiRM~-------nWL~l~e~qr~~ 89 (101)
T 1wh6_A 19 TLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQ-------LWLSDQLGQAVG 89 (101)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTCCHHHHHHHHHHH-------HHHHHTTCSCCC
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHccCcCcHHHHhcCCCCHHHHhHHhHHHHHHHH-------HHhCCcHHHHHh
Confidence 334444455555555556666553 2233222222233333322 2233344444 499998876543
No 157
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=62.31 E-value=2.6 Score=31.80 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=27.0
Q ss_pred HHHhhhhhhccchhhhhhhhhcccccccccccccchhccc
Q psy3400 219 QFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 219 ~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
.||+.|...| ||.+++..+|. ++++|+++|+..
T Consensus 3 ~l~~~r~~~g-sq~~lA~~lgv------s~~~is~~e~g~ 35 (79)
T 3bd1_A 3 AIDIAINKLG-SVSALAASLGV------RQSAISNWRARG 35 (79)
T ss_dssp HHHHHHHHHS-SHHHHHHHHTC------CHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CHHHHHHHHCC------CHHHHHHHHHCC
Confidence 4677888899 99999998865 788888887654
No 158
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=61.80 E-value=3.9 Score=33.32 Aligned_cols=47 Identities=11% Similarity=-0.025 Sum_probs=36.4
Q ss_pred CceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhh
Q psy3400 301 RTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEK 353 (417)
Q Consensus 301 RT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~K 353 (417)
...++..++.+|.-.+.-- ...+||+.|++++.+|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4568899999887765322 2478999999999999999887766654
No 159
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=61.79 E-value=4.6 Score=30.20 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=34.2
Q ss_pred echhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 304 IEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 304 fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
++..++.+|.-.|.. ....+||+.++++..+|+.++.+-+.|.+..
T Consensus 17 L~~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 17 LSERERQVLSAVVAG------LPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HCHHHHHHHHHHTTT------CCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 567777777764322 2346899999999999999988777776653
No 160
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=58.99 E-value=3.6 Score=39.64 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=31.5
Q ss_pred HHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 216 FAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 216 Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
+.+.+|+.|...|+||.+++..+ .|++++++||+...
T Consensus 4 ig~~lk~~R~~~gltq~~la~~~-------is~~~is~~E~g~~ 40 (317)
T 2awi_A 4 IGSVLKQIRQELNYHQIDLYSGI-------MSKSVYIKVEADSR 40 (317)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTTT-------SCHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCCCCHHHHHHHh-------cCHHHHHHHHCCCC
Confidence 66789999999999999999643 68999999998753
No 161
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=58.13 E-value=5.4 Score=29.24 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=36.3
Q ss_pred CceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhc
Q psy3400 301 RTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354 (417)
Q Consensus 301 RT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR 354 (417)
...++..++.+|...+ ..+ ...+||+.++++...|+.++.+-+.|.+.
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 4457888888888743 222 35689999999999999999877776654
No 162
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=57.71 E-value=3.8 Score=32.07 Aligned_cols=49 Identities=10% Similarity=-0.037 Sum_probs=36.7
Q ss_pred CceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 301 RTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 301 RT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
-..++..++.+|.-.|.- ....+||+.|+++..+|+.+..+-|.|.+..
T Consensus 27 l~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAKG------YSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GGGCCSHHHHHHHHHHTT------CCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred HhcCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 345788888888775432 1235789999999999999998877776654
No 163
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=55.92 E-value=2.7 Score=25.14 Aligned_cols=15 Identities=40% Similarity=0.784 Sum_probs=12.1
Q ss_pred CCCchhcccchhhhh
Q psy3400 337 EKEVVRVWFCNRRQK 351 (417)
Q Consensus 337 s~~qVqVWFQNRR~K 351 (417)
++..|-+-|||||.-
T Consensus 2 skkpvpiiycnrrtg 16 (21)
T 8tfv_A 2 SKKPVPIIYCNRRTG 16 (26)
T ss_dssp CCCCCCCEEEEGGGT
T ss_pred CCCcccEEEEcCccc
Confidence 466788999999973
No 164
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=53.44 E-value=5.5 Score=31.32 Aligned_cols=43 Identities=9% Similarity=0.292 Sum_probs=30.0
Q ss_pred CceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccc
Q psy3400 301 RTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFC 346 (417)
Q Consensus 301 RT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQ 346 (417)
|..|+.+++......+.... .....+||..+|++..+|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHH
Confidence 34577877766555553320 12367899999999999999975
No 165
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=52.03 E-value=8.9 Score=28.57 Aligned_cols=50 Identities=10% Similarity=0.019 Sum_probs=36.8
Q ss_pred eechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhh
Q psy3400 303 SIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEK 353 (417)
Q Consensus 303 ~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~K 353 (417)
.++..++.+|...|-.... ......+||..+|+++.+|+.|...-+.|.|
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3677888888887742100 0123458999999999999999988888877
No 166
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A*
Probab=51.77 E-value=2 Score=35.38 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=30.2
Q ss_pred CCCCChHHHHHHHHHHHhhhhhhc-cchhhhhhhhhcccccccccc-cccchhcccCChhhhhhcchhHHHHHHhhhcC
Q psy3400 205 EDAPTSDDLEAFAKQFKQRRIKLG-FTQADVGLALGTLYGNVFSQT-TICRFEALQLSFKNMCKLKPLLQKWLEEADST 281 (417)
Q Consensus 205 ~d~~~~~ele~Fak~fK~rRI~lG-~TQ~dVg~aLg~l~g~~~SQt-TI~RFE~lqLS~knm~kLkPlLqkWLeEae~~ 281 (417)
++..|.+-.++...+|+..-|.+. |....+++..|++....-... .+.........|..|. .||..++..
T Consensus 5 ~~~~T~~I~~~ik~~Lk~~~isQ~~FA~~VL~rsQgtLs~lL~~Pkdpw~~l~~Gre~f~rM~-------nWL~l~e~e 76 (93)
T 2o4a_A 5 NTEVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQ-------NFLQLPEAE 76 (93)
T ss_dssp --CCCTTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCCCTTSCCHHHHHHHHHHH-------HHHTSCHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhhHHHHHHcCCCCcHHHHHHHHHHHHHHH-------HHhCCCHHH
Confidence 444555555566666666555333 333333333333332222222 3333333333333433 488776643
No 167
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=50.83 E-value=7.9 Score=31.92 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=36.2
Q ss_pred eechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccC
Q psy3400 303 SIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMT 356 (417)
Q Consensus 303 ~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~ 356 (417)
.++..++.+|. .|.. .....+||+.||++..+|+.+...-|.|.|+..
T Consensus 109 ~L~~~~r~v~~-~~~~-----g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-----GYSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTT-----TCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 46677777777 4332 224678999999999999999988888877653
No 168
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=47.95 E-value=10 Score=29.39 Aligned_cols=52 Identities=8% Similarity=0.100 Sum_probs=36.9
Q ss_pred echhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccC
Q psy3400 304 IEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMT 356 (417)
Q Consensus 304 fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~ 356 (417)
++..++.+|...|-.... ......+||..+|++..+|+.+...-+.|.|+..
T Consensus 19 L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 567778888777642100 1123568899999999999999988887777654
No 169
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=44.43 E-value=10 Score=32.24 Aligned_cols=52 Identities=10% Similarity=-0.011 Sum_probs=39.6
Q ss_pred eechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCCCC
Q psy3400 303 SIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTPPN 359 (417)
Q Consensus 303 ~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~~~ 359 (417)
.++..++.+|.-.|... ....+||+.||+++.+|+++...-|.+.|+.....
T Consensus 93 ~Lp~~~r~vl~L~~~~g-----~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~ 144 (157)
T 2lfw_A 93 RMTPLSRQALLLTAMEG-----FSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRAL 144 (157)
T ss_dssp TSCTTHHHHHTTTSSSC-----CCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCC
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777777776654332 33578999999999999999998888888765543
No 170
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=42.14 E-value=7.5 Score=32.29 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=36.6
Q ss_pred echhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 304 IEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 304 fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
+++.++.++...|... ....+||..+|++..+|+.|...-|.|.|+.
T Consensus 23 L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 23 LTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp SCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 6777788887765433 2357899999999999999999888877654
No 171
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=41.71 E-value=16 Score=31.18 Aligned_cols=52 Identities=23% Similarity=0.142 Sum_probs=36.3
Q ss_pred HHHHHHHhhhhh------hccchhhhhhhhhcccccccccccccchhccc---CChhhhhhc
Q psy3400 215 AFAKQFKQRRIK------LGFTQADVGLALGTLYGNVFSQTTICRFEALQ---LSFKNMCKL 267 (417)
Q Consensus 215 ~Fak~fK~rRI~------lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq---LS~knm~kL 267 (417)
.|++.|+.-|-. -++||.+|+..++. .|..+|+++|+.+|+-. -+...+.+|
T Consensus 7 ~~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~-~G~~is~s~is~~E~G~r~~Ps~~~l~~i 67 (135)
T 3r1f_A 7 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKA-EGITMSAPYLSQLRSGNRTNPSGATMAAL 67 (135)
T ss_dssp CHHHHHHHHHHHCCCTTSCCCCHHHHHHHHHT-TTCCCCHHHHHHHHHTSSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCCCHHHHHHHHcc-cCCCcCHHHHHHHHCCCCCCCCHHHHHHH
Confidence 366666666653 35999999999983 46668999999998754 344444443
No 172
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=41.60 E-value=8.1 Score=27.39 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=23.8
Q ss_pred HHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 328 TTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 328 ~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
.+||+.|++++.+|+.+..+-+.|.+..
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 5899999999999999988877776543
No 173
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=40.03 E-value=15 Score=28.99 Aligned_cols=49 Identities=16% Similarity=0.071 Sum_probs=35.0
Q ss_pred CCCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhh
Q psy3400 299 KKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEK 353 (417)
Q Consensus 299 RkRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~K 353 (417)
.....+|..++.+|.-.+.- ....+||+.|++++++|+....+-+.|..
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~G------~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEKG------FTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ----CCCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 34556889999988876622 23668999999999999998877666543
No 174
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=39.91 E-value=9.5 Score=32.71 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=36.3
Q ss_pred echhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCC
Q psy3400 304 IEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTP 357 (417)
Q Consensus 304 fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~ 357 (417)
++..++.+|.-.|... ....+||..||++..+|+.+...-|.|.|+...
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 189 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 189 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666554332 235689999999999999999988888887543
No 175
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=39.24 E-value=5.3 Score=33.89 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=12.8
Q ss_pred HHHHHHHHhhhhhhccchhhhhh
Q psy3400 214 EAFAKQFKQRRIKLGFTQADVGL 236 (417)
Q Consensus 214 e~Fak~fK~rRI~lG~TQ~dVg~ 236 (417)
+.+|+++|+....-+++|..++.
T Consensus 30 k~I~~~ikewL~~~~isQ~~FA~ 52 (111)
T 1wh8_A 30 YSITKRVKEVLTDNNLGQRLFGE 52 (111)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHH
Confidence 34445555555555567776654
No 176
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=38.90 E-value=8.4 Score=33.99 Aligned_cols=48 Identities=13% Similarity=0.078 Sum_probs=38.0
Q ss_pred echhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccC
Q psy3400 304 IEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMT 356 (417)
Q Consensus 304 fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~ 356 (417)
++..++.+|...|... ....+||+.||++...|+.+...-|.|.|+..
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 6777888887776432 34568999999999999999998888887653
No 177
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=38.04 E-value=13 Score=30.54 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=36.4
Q ss_pred echhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 304 IEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 304 fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
++..++.+|...|... ....+||..+|++..+|+.+...-|.|.|+.
T Consensus 26 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 6677788887765333 2357899999999999999998888877654
No 178
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=37.38 E-value=6.8 Score=33.22 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=32.9
Q ss_pred hHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 308 VKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 308 Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
-+..-...|.+..| . -...+||+..|+++..|...|.|+..
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHH
Confidence 34555566777777 5 67889999999999999999999843
No 179
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=35.71 E-value=13 Score=31.28 Aligned_cols=44 Identities=27% Similarity=0.358 Sum_probs=35.1
Q ss_pred CCCCChHHHHHHHHHHHhhhh-hhccchhhhhhhhhcccccccccccccch
Q psy3400 205 EDAPTSDDLEAFAKQFKQRRI-KLGFTQADVGLALGTLYGNVFSQTTICRF 254 (417)
Q Consensus 205 ~d~~~~~ele~Fak~fK~rRI-~lG~TQ~dVg~aLg~l~g~~~SQtTI~RF 254 (417)
+|..|.+|++.+++.++-.+. .-|.|+.++...+|. |-.||+|.
T Consensus 34 edL~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~------StaTIsRv 78 (107)
T 3frw_A 34 EDVCTINELLSLSQRFEVAKMLTDKRTYLDISEKTGA------STATISRV 78 (107)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCC------CHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCc------cHHHHHHH
Confidence 367889999999988887765 348999999888765 77788885
No 180
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=35.71 E-value=17 Score=32.91 Aligned_cols=48 Identities=10% Similarity=0.038 Sum_probs=37.2
Q ss_pred CceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhc
Q psy3400 301 RTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354 (417)
Q Consensus 301 RT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR 354 (417)
...+|..++.+|.-.+.- ..-.+||+.|++++++|+....|-|.|..-
T Consensus 173 ~~~Lt~~e~~vl~~~~~g------~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKG------KTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHTT------CCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 456899999998765422 234689999999999999999888877543
No 181
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=35.21 E-value=43 Score=26.48 Aligned_cols=47 Identities=19% Similarity=0.107 Sum_probs=36.9
Q ss_pred CCceechhhHHHHhhhcc-----CCCCCCHHHHHHHHHHcC--CCCCchhcccc
Q psy3400 300 KRTSIEVTVKGALETHFH-----KQPKPSAQEITTLADSLQ--LEKEVVRVWFC 346 (417)
Q Consensus 300 kRT~fT~~Ql~~LE~~F~-----~n~yPS~~er~eLA~~Lg--Ls~~qVqVWFQ 346 (417)
+...++.+++..|...|. .+.+.+..+...+...+| +++..|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445688999999988873 457899999999988887 56677777765
No 182
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.52 E-value=20 Score=33.15 Aligned_cols=48 Identities=15% Similarity=-0.024 Sum_probs=37.0
Q ss_pred ceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 302 TSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 302 T~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
..++..++.+|.-.+.-- ...+||+.|++++.+|++...+-|.|.|..
T Consensus 196 ~~L~~~erevl~L~~~G~------s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIRKGL------SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 357888888887754222 356899999999999999998888877654
No 183
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=34.37 E-value=22 Score=29.89 Aligned_cols=43 Identities=21% Similarity=0.147 Sum_probs=31.1
Q ss_pred HHHHHHHhhhhh------hccchhhhhhhhhcccccccccccccchhccc
Q psy3400 215 AFAKQFKQRRIK------LGFTQADVGLALGTLYGNVFSQTTICRFEALQ 258 (417)
Q Consensus 215 ~Fak~fK~rRI~------lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lq 258 (417)
.|++.++.-|-. -++||.+|+..++. .|..+|+++|+.+|+-.
T Consensus 5 ~~a~RL~~L~~~~~~~~~~~lT~~elA~~~~~-~G~~iS~s~is~iE~G~ 53 (123)
T 3qwg_A 5 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKA-EGITMSAPYLSQLRSGN 53 (123)
T ss_dssp CHHHHHHHHHHHSSCTTTCSCCHHHHHHHHHH-TTCCCCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHhhccCCCCCCCHHHHHHHHcc-cCCCcCHHHHHHHHcCC
Confidence 355555555442 25999999999983 46668999999998754
No 184
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=33.47 E-value=11 Score=34.07 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=2.5
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q psy3400 84 ADPWSSSMPGIHNHHHPHH 102 (417)
Q Consensus 84 ~~~~~~~~~~~~~~~h~~~ 102 (417)
..|+-..+.|||+|||+||
T Consensus 159 ~rp~ny~~~~~~~~~~~~~ 177 (178)
T 3ga4_A 159 PQAFNVQEEFHHHHHHHHH 177 (178)
T ss_dssp CCSCC--------------
T ss_pred cCCCChHHhhhhccccccC
Confidence 3455556678766655544
No 185
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=33.42 E-value=16 Score=31.42 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=31.7
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
+......|.+..|-. -...+||+..|+++..|..+|.|+..
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~ 74 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDD 74 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHH
Confidence 455556677776643 34678999999999999999999854
No 186
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=33.14 E-value=30 Score=28.73 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=30.2
Q ss_pred CCCChHHHHHHHHHHHhhhhhhccchhhhhhhhhcccccc
Q psy3400 206 DAPTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNV 245 (417)
Q Consensus 206 d~~~~~ele~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~ 245 (417)
+.-+.+|+.+||.-++++|.. ..=.+.+..|-.|||..
T Consensus 27 ~~L~~~ElqqFA~Llr~YR~G--~~I~~Fc~kLl~LyG~~ 64 (98)
T 4fqn_A 27 TKLSSQEIQQFAALLHEYRNG--ASIHEFCINLRQLYGDS 64 (98)
T ss_dssp TTSCHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHCGG
T ss_pred hhcChHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHhchH
Confidence 445689999999999999984 45567888888888853
No 187
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=32.89 E-value=15 Score=25.60 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=24.3
Q ss_pred hhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccc
Q psy3400 306 VTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFC 346 (417)
Q Consensus 306 ~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQ 346 (417)
.++...+...|... + ...+||+.||++..+|+.|+.
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 44444444444322 2 356889999999999999975
No 188
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=32.67 E-value=23 Score=31.26 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhhhhhcc--chhhhhhhhhcccccccccccccch
Q psy3400 212 DLEAFAKQFKQRRIKLGF--TQADVGLALGTLYGNVFSQTTICRF 254 (417)
Q Consensus 212 ele~Fak~fK~rRI~lG~--TQ~dVg~aLg~l~g~~~SQtTI~RF 254 (417)
..+.|.+.+|+.|...|+ ||.+++..+|.- +++++.+.
T Consensus 7 ~q~~i~~~i~~~~~~~g~~ps~~elA~~lgis-----s~~tv~~~ 46 (202)
T 1jhf_A 7 RQQEVFDLIRDHISQTGMPPTRAEIAQRLGFR-----SPNAAEEH 46 (202)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCS-----SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCccHHHHHHHhCCC-----ChHHHHHH
Confidence 445678889999999999 999999988651 15566554
No 189
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=32.02 E-value=12 Score=31.29 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=30.1
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR 349 (417)
+..-.+.|.+. ..-...+||+..|+++..|...|.|+.
T Consensus 20 l~aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 57 (190)
T 2v57_A 20 LDAAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERT 57 (190)
T ss_dssp HHHHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 34445557666 566678899999999999999999984
No 190
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=31.80 E-value=25 Score=31.76 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=36.8
Q ss_pred CceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhc
Q psy3400 301 RTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354 (417)
Q Consensus 301 RT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR 354 (417)
...+|..++.+|.-.+. .....+||+.|++++++|+....|-|.|..-
T Consensus 171 ~~~Lt~~e~~vl~~~~~------g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV------GKTMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp CCCCCHHHHHHHHHHTT------TCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 45689999999876432 1235689999999999999999888777543
No 191
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=31.79 E-value=15 Score=29.32 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=30.8
Q ss_pred CceechhhHHHHhhhccCCC--CCCH-HHHHHHHHHcCCCCCchhcccch
Q psy3400 301 RTSIEVTVKGALETHFHKQP--KPSA-QEITTLADSLQLEKEVVRVWFCN 347 (417)
Q Consensus 301 RT~fT~~Ql~~LE~~F~~n~--yPS~-~er~eLA~~LgLs~~qVqVWFQN 347 (417)
+..|+.+++......+.... +.+. ....+||..+|++..+|..|...
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 34577777755544432211 2221 45778999999999999999653
No 192
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=31.45 E-value=5.2 Score=34.02 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=32.3
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR 349 (417)
+..-...|.+..| . ....+||+..|+++..|...|.|+-
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~ 60 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRW 60 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHH
Confidence 4555566888888 5 5788999999999999999999984
No 193
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=31.02 E-value=10 Score=33.33 Aligned_cols=45 Identities=9% Similarity=0.001 Sum_probs=0.0
Q ss_pred eechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhh
Q psy3400 303 SIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKE 352 (417)
Q Consensus 303 ~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~ 352 (417)
.++..++.+|...|. ......+||+.||++..+|+.++...|.|.
T Consensus 198 ~L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 198 ELDERERLIVYLRYY-----KDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp --------------------------------------------------
T ss_pred hCCHHHHHHHHHHHh-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 355566666665443 334567899999999999999988666654
No 194
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=31.01 E-value=15 Score=31.48 Aligned_cols=24 Identities=17% Similarity=0.587 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCCCchhcccchhhh
Q psy3400 327 ITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 327 r~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
...||+.||+...+++.|++..|+
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~Rq 95 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQARS 95 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCCB
T ss_pred HHHHHHHhCCCcccEEEEEeecCC
Confidence 467899999999999999865553
No 195
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=30.10 E-value=13 Score=31.58 Aligned_cols=43 Identities=12% Similarity=0.264 Sum_probs=32.1
Q ss_pred hhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 307 TVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 307 ~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
.-+......|.+..|-. -...+||+..|+++..|..+|.|+-.
T Consensus 35 ~Il~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 35 QIIKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 33455566677776643 34678899999999999999999853
No 196
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=29.59 E-value=17 Score=30.70 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=24.0
Q ss_pred hccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 315 HFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 315 ~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
.|.+..|-. -...+||+..|+++..|...|.|+..
T Consensus 37 lf~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 71 (212)
T 3nxc_A 37 LESSDGSQR-ITTAKLAASVGVSEAALYRHFPSKTR 71 (212)
T ss_dssp HHC-------CCHHHHHHHTTSCHHHHHTTCSSHHH
T ss_pred HHhcCChhh-cCHHHHHHHhCCChhHHHHHCCCHHH
Confidence 456555433 34678999999999999999999853
No 197
>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=29.36 E-value=9.8 Score=33.59 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=9.7
Q ss_pred HHHHHHhhhhhhccchhhhh
Q psy3400 216 FAKQFKQRRIKLGFTQADVG 235 (417)
Q Consensus 216 Fak~fK~rRI~lG~TQ~dVg 235 (417)
+|..+++.-...+++|+-++
T Consensus 26 I~~~Ik~eLk~~~IsQ~~FA 45 (141)
T 1yse_A 26 IYQWVRDELKRAGISQAVFA 45 (141)
T ss_dssp HHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHH
Confidence 34444444444445666555
No 198
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=28.91 E-value=27 Score=31.57 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=32.5
Q ss_pred Cceechhh-HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 301 RTSIEVTV-KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 301 RT~fT~~Q-l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
|...+.++ +..-...|.+..|-. -.+..||+.+|+++..|...|.||..
T Consensus 13 ~~~~~r~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~ 62 (237)
T 2hxo_A 13 QEPLSRERIVGAAVELLDTVGERG-LTFRALAERLATGPGAIYWHITGKAE 62 (237)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTTT-CCHHHHHHHHTSCGGGGGGTCCCHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHHCCChHHHHHhcCCHHH
Confidence 33344433 344455566666543 34678899999999999999999854
No 199
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=28.89 E-value=22 Score=28.88 Aligned_cols=42 Identities=10% Similarity=0.237 Sum_probs=29.7
Q ss_pred ceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchh
Q psy3400 302 TSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNR 348 (417)
Q Consensus 302 T~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNR 348 (417)
..++.+++..+...+... . ...+||+.||++..+|..|+..-
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHcc
Confidence 346666666666666432 1 35678999999999999998643
No 200
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=28.24 E-value=46 Score=31.09 Aligned_cols=50 Identities=10% Similarity=0.041 Sum_probs=38.7
Q ss_pred CCceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhcc
Q psy3400 300 KRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355 (417)
Q Consensus 300 kRT~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~ 355 (417)
....+|..++++|.-... .....+||+.|++++++|+....|-+.|..-.
T Consensus 194 ~~~~Lt~re~~vl~~~~~------G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~~ 243 (265)
T 3qp6_A 194 SNMPLSQREYDIFHWMSR------GKTNWEIATILNISERTVKFHVANVIRKLNAN 243 (265)
T ss_dssp CCCCCCHHHHHHHHHHHT------TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CcCCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 345789999999987642 22356899999999999999999888876543
No 201
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=27.46 E-value=28 Score=29.54 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=30.8
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR 349 (417)
+......|.+..|-... +.+||+..|+++..|-..|.|+-
T Consensus 20 l~aA~~lf~~~G~~~~s-~~~Ia~~agvs~~t~Y~yF~sKe 59 (203)
T 3ccy_A 20 IERAAAMFARQGYSETS-IGDIARACECSKSRLYHYFDSKE 59 (203)
T ss_dssp HHHHHHHHHHTCTTTSC-HHHHHHHTTCCGGGGTTTCSCHH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCCcCeeeeeeCCHH
Confidence 44555567777664433 67899999999999999999984
No 202
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=26.94 E-value=18 Score=30.05 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=24.4
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
+..-...|.+..|- .-...+||+..|+++..|...|.|+..
T Consensus 18 l~aA~~lf~~~G~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~ 58 (199)
T 3on2_A 18 LARAESTLEKDGVD-GLSLRQLAREAGVSHAAPSKHFRDRQA 58 (199)
T ss_dssp HHHHHHHHHHHCGG-GCCHHHHHHHTC-----CCCSSSSHHH
T ss_pred HHHHHHHHHhcChh-hhhHHHHHHHhCCChHHHHHHhCCHHH
Confidence 34444556555543 233678999999999999999999853
No 203
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=26.62 E-value=22 Score=30.11 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=29.0
Q ss_pred eechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccch
Q psy3400 303 SIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCN 347 (417)
Q Consensus 303 ~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQN 347 (417)
.++.+++..+...+... ....+||+.|+++..+|+.|+..
T Consensus 25 ~~s~e~r~~ii~l~~~G-----~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLAHQG-----VRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 56777766666655432 23557899999999999999864
No 204
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=26.51 E-value=16 Score=30.55 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=30.1
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR 349 (417)
+..-...|.+..|-.. ...+||+..|+++..|...|.|+.
T Consensus 23 l~aa~~l~~~~G~~~~-s~~~Ia~~agvs~~t~Y~~F~sK~ 62 (206)
T 3kz9_A 23 MEIALEVFARRGIGRG-GHADIAEIAQVSVATVFNYFPTRE 62 (206)
T ss_dssp HHHHHHHHHHSCCSSC-CHHHHHHHHTSCHHHHHHHCCSHH
T ss_pred HHHHHHHHHhcCcccc-cHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3444555777665433 366889999999999999999984
No 205
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=26.29 E-value=22 Score=29.80 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=30.6
Q ss_pred hHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhh
Q psy3400 308 VKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 308 Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR 349 (417)
-+......|.+..|-. -...+||+..|+++..|...|.|+.
T Consensus 21 Il~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~ 61 (211)
T 3him_A 21 IRAAAIEVFAAKGYGA-TTTREIAASLDMSPGAVYPHYKTKE 61 (211)
T ss_dssp HHHHHHHHHHHHCSTT-CCHHHHHHHTTCCTTSSTTTCSSHH
T ss_pred HHHHHHHHHHHcCCCc-CCHHHHHHHhCCCcChhhhcCCCHH
Confidence 3445555566666543 3467899999999999999999985
No 206
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=25.68 E-value=13 Score=31.16 Aligned_cols=40 Identities=10% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR 349 (417)
+......|.+..|-. -.+.+||+..|+++..|...|.|+.
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (203)
T 3f1b_A 20 LDAAVDVFSDRGFHE-TSMDAIAAKAEISKPMLYLYYGSKD 59 (203)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHCCSHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHhCCchHHHHHHhCCHH
Confidence 344455566666533 3467899999999999999999984
No 207
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=25.26 E-value=27 Score=28.36 Aligned_cols=53 Identities=9% Similarity=0.146 Sum_probs=36.7
Q ss_pred echhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhccCC
Q psy3400 304 IEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMTP 357 (417)
Q Consensus 304 fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR~~~ 357 (417)
++..++.++...|-.+.+ ......+||..+|++..+|+......+.|.|+...
T Consensus 20 Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~ 72 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 72 (99)
T ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777643211 11345689999999999999998877777776543
No 208
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=25.24 E-value=16 Score=27.22 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.5
Q ss_pred HHHHHHHcCCCCCchhcccchhh
Q psy3400 327 ITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 327 r~eLA~~LgLs~~qVqVWFQNRR 349 (417)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 56899999999999999998765
No 209
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=25.21 E-value=26 Score=30.32 Aligned_cols=39 Identities=0% Similarity=-0.145 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhhhhccchhhhhhhhhcccccccccccccchhcccC
Q psy3400 213 LEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 259 (417)
Q Consensus 213 le~Fak~fK~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqL 259 (417)
.+.|.+.+|+.|... ||.+++..+|. ++++|+++|+...
T Consensus 7 ~~~~~~rl~~~r~~~--tq~elA~~~Gi------s~~~i~~~e~g~~ 45 (189)
T 2fjr_A 7 NVDVLDRICEAYGFS--QKIQLANHFDI------ASSSLSNRYTRGA 45 (189)
T ss_dssp HHHHHHHHHHHHTCS--SHHHHHHHTTC------CHHHHHHHHHSSS
T ss_pred cHHHHHHHHHHHhhc--CHHHHHHHhCc------CHHHHHHHHhCCC
Confidence 345777777777555 99999998864 7889999887543
No 210
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=24.94 E-value=17 Score=30.30 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=30.1
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
+......|.+..|-.. ...+||+..|+++..|...|.|+..
T Consensus 16 l~aa~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSGV-GLNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHCCcccC-CHHHHHHHhCCChhhHHHHcCCHHH
Confidence 4445555666655433 3668899999999999999999853
No 211
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.89 E-value=47 Score=27.30 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=18.6
Q ss_pred CCCChHHHHHHHHHHHhhhhhh
Q psy3400 206 DAPTSDDLEAFAKQFKQRRIKL 227 (417)
Q Consensus 206 d~~~~~ele~Fak~fK~rRI~l 227 (417)
-+.+.+|+++||++|++.+-.|
T Consensus 4 a~~dpeElr~Fa~~L~~F~d~L 25 (94)
T 3fx7_A 4 VQMDTEEVREFVGHLERFKELL 25 (94)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999998755
No 212
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=24.88 E-value=17 Score=28.11 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCCCchhcccchh
Q psy3400 327 ITTLADSLQLEKEVVRVWFCNR 348 (417)
Q Consensus 327 r~eLA~~LgLs~~qVqVWFQNR 348 (417)
..+||+.||++...|..|+.++
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~ 34 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAG 34 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHhCC
Confidence 6789999999999999998754
No 213
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=24.64 E-value=19 Score=31.99 Aligned_cols=41 Identities=12% Similarity=0.267 Sum_probs=31.1
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
+..-.+.|.+..|-. ..+.+||+..|+++..|...|.|+..
T Consensus 49 l~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~ 89 (255)
T 3g1o_A 49 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEA 89 (255)
T ss_dssp HHHHHHHHTTSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCcc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 455566687776533 33668899999999999999999853
No 214
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=23.81 E-value=55 Score=24.10 Aligned_cols=41 Identities=0% Similarity=-0.075 Sum_probs=30.5
Q ss_pred ceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhh
Q psy3400 302 TSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 302 T~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR 349 (417)
..++.+.+..+...... + ..+||+.+|++...|..|-.+++
T Consensus 9 ~~~~g~~lr~~R~~~gl----t---q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL----T---QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTC----C---HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCC----C---HHHHHHHhCcCHHHHHHHHcCCC
Confidence 35777777777665432 2 46789999999999999987754
No 215
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=23.63 E-value=19 Score=29.69 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.6
Q ss_pred hccchhhhhhhhhcccccccccccccchhcc
Q psy3400 227 LGFTQADVGLALGTLYGNVFSQTTICRFEAL 257 (417)
Q Consensus 227 lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~l 257 (417)
.|+||.+++..+|. ++++|+++|+-
T Consensus 4 ~glTQ~eLA~~~Gv------s~~~is~~E~G 28 (122)
T 1nr3_A 4 RGWSQKKIARELKT------TRQNVSAIERK 28 (122)
T ss_dssp CSCSSCSTHHHHHH------CCSSSCCHHHH
T ss_pred cCCCHHHHHHHhCC------CHHHHHHHHcC
Confidence 68999999998875 78899999876
No 216
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.52 E-value=19 Score=31.69 Aligned_cols=41 Identities=10% Similarity=0.187 Sum_probs=30.3
Q ss_pred hHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhh
Q psy3400 308 VKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 308 Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR 349 (417)
-+..-...|.+..|-. -....||+..|+++..|...|.|+.
T Consensus 21 il~aA~~l~~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~~K~ 61 (216)
T 2oi8_A 21 IKDHAWEQIATAGASA-LSLNAIAKRMGMSGPALYRYFDGRD 61 (216)
T ss_dssp HHHHHHHHHHHHCTTS-CCHHHHHHHTTCCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHhcCccc-CCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3444455576666543 3467889999999999999999984
No 217
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=23.18 E-value=7 Score=33.47 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=32.6
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
+..-...|.+..| . -....||+..|+++..|..+|.|+..
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~ 58 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQA 58 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 4445566888887 5 67889999999999999999999853
No 218
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=23.18 E-value=16 Score=30.96 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=30.2
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
+......|.+..|-.. ...+||+..|+++..|..+|.|+-.
T Consensus 18 l~aA~~lf~e~G~~~~-t~~~IA~~agvsk~tlY~~F~sKe~ 58 (192)
T 2fq4_A 18 LSASYELLLESGFKAV-TVDKIAERAKVSKATIYKWWPNKAA 58 (192)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCcccc-cHHHHHHHcCCCHHHHHHHCCCHHH
Confidence 3444455666665433 3678999999999999999999854
No 219
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=23.14 E-value=25 Score=27.67 Aligned_cols=42 Identities=5% Similarity=0.025 Sum_probs=29.2
Q ss_pred eechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhh
Q psy3400 303 SIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 303 ~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR 349 (417)
.++.+++..+...+.. .+ + ..+||+.|+++..+|..|+..-+
T Consensus 17 ~~s~~~r~~i~~~~~~-g~-s---~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD-GI-R---PCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHHHT-TC-C---HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-CC-C---HHHHHHHHCcCHHHHHHHHHHHH
Confidence 3666666665555542 22 2 45789999999999999987543
No 220
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=23.07 E-value=32 Score=30.28 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=35.6
Q ss_pred ceechhhHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhhhhhc
Q psy3400 302 TSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354 (417)
Q Consensus 302 T~fT~~Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~K~KR 354 (417)
..+|..+...|+-...- ....+||+.|++++++|++..+|-|.|..-
T Consensus 148 ~~LT~rE~~vL~~l~~g------~s~~eIa~~l~is~~TV~~hi~~l~~KL~~ 194 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG------LTNKQIADRMFLAEKTVKNYVSRLLAKLGM 194 (225)
T ss_dssp TTSCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 45788888777655432 235689999999999999999988877644
No 221
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.81 E-value=24 Score=32.16 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=29.8
Q ss_pred HHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 310 GALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 310 ~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
..-...|.+..|-. -.+.+||+.+|+++..|...|.||..
T Consensus 26 ~AA~~l~~e~G~~~-~S~~~IA~~aGvs~~tlY~hF~sK~~ 65 (243)
T 2g7l_A 26 DTAVALMRAEGLEK-VTMRRLAQELDTGPASLYVYVANTAE 65 (243)
T ss_dssp HHHHHHHHHHCSSS-CCHHHHHHHTTSCHHHHTTTCCSHHH
T ss_pred HHHHHHHHhcCchh-cCHHHHHHHHCCChhHHHHHcCCHHH
Confidence 44455566655533 34678999999999999999999864
No 222
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=22.53 E-value=33 Score=26.14 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=21.2
Q ss_pred Hhhhhhhccchhhhhhhhhcccccccccccccchhc
Q psy3400 221 KQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEA 256 (417)
Q Consensus 221 K~rRI~lG~TQ~dVg~aLg~l~g~~~SQtTI~RFE~ 256 (417)
+..+.+.|+||.+++..+|. +++||++.+.
T Consensus 15 ~~~l~~~glT~~~LA~~~Gv------s~stls~~~~ 44 (74)
T 1neq_A 15 IAGLKKRKLSLSALSRQFGY------APTTLANALE 44 (74)
T ss_dssp HHHHHTTSCCHHHHHHHHSS------CHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHCc------CHHHHHHHHc
Confidence 33344668999999988874 6777776654
No 223
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=22.15 E-value=91 Score=26.01 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=32.4
Q ss_pred CCceechhhHHHHhhhcc-----CCCCCCHHHHHHHHHHcCCCCC
Q psy3400 300 KRTSIEVTVKGALETHFH-----KQPKPSAQEITTLADSLQLEKE 339 (417)
Q Consensus 300 kRT~fT~~Ql~~LE~~F~-----~n~yPS~~er~eLA~~LgLs~~ 339 (417)
+|..+|.+|+..|...|. .+.+.+..+...+.+.||+...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 456799999999999984 4568999999999888886654
No 224
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=22.06 E-value=25 Score=29.06 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=31.2
Q ss_pred hHHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 308 VKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 308 Ql~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
-+......|.+..|-. -...+||+..|+++..|...|.|+..
T Consensus 14 Il~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 55 (195)
T 3ppb_A 14 ILETALQLFVSQGFHG-TSTATIAREAGVATGTLFHHFPSKEQ 55 (195)
T ss_dssp HHHHHHHHHHHTCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 3445555676666543 34778999999999999999999853
No 225
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=21.97 E-value=48 Score=28.84 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=29.6
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR 349 (417)
+......|.+..|-. -.+.+||+..|+++..|...|.|+.
T Consensus 36 l~aA~~lf~~~G~~~-~t~~~IA~~Agvs~~t~Y~~F~sKe 75 (230)
T 2iai_A 36 LSVAVQVFIERGYDG-TSMEHLSKAAGISKSSIYHHVTGKE 75 (230)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHHCCChhHHHHhCCCHH
Confidence 444555566665543 3367889999999999999999984
No 226
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=21.66 E-value=18 Score=32.14 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=30.6
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR 349 (417)
+......|.+..|-. .....||+..|+++..|...|.|+.
T Consensus 29 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~tlY~~F~sKe 68 (231)
T 2zcx_A 29 LDAARELGTERGIRE-ITLTDIAATVGMHKSALLRYFETRE 68 (231)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHH
Confidence 455556677766543 3467899999999999999999984
No 227
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=21.64 E-value=13 Score=33.07 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=30.3
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
+....+.|.+..|-. -.+.+||+..|+++..|..+|.|+..
T Consensus 52 l~aA~~lf~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sKe~ 92 (245)
T 3aqt_A 52 ITSARTLMAERGVDN-VGIAEITEGANIGTGTFYNYFPDREQ 92 (245)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSHHH
T ss_pred HHHHHHHHHhcCccc-CcHHHHHHHhCCChHHHHHHcCCHHH
Confidence 344555566665533 34678999999999999999999853
No 228
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.60 E-value=14 Score=31.69 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=31.3
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
+..-...|.+.. ..-....||+..|+++..|..+|.|+..
T Consensus 26 l~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~ 65 (215)
T 2hku_A 26 FTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKER 65 (215)
T ss_dssp HHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 344455576666 6666889999999999999999999853
No 229
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=21.47 E-value=26 Score=29.77 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=31.0
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR 349 (417)
+..-...|.+..|-.. ...+||+..|+++..|...|.|+.
T Consensus 23 l~aA~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~ 62 (218)
T 3gzi_A 23 ILAARNLFIERPYAQV-SIREIASLAGTDPGLIRYYFGSKE 62 (218)
T ss_dssp HHHHHHHHHTSCCSCC-CHHHHHHHHTSCTHHHHHHHSSHH
T ss_pred HHHHHHHHHHCCCCcC-CHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3455566877776544 366789999999999999999984
No 230
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=21.31 E-value=42 Score=27.96 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHHhhhhhhc-cchhhhhhhhh
Q psy3400 209 TSDDLEAFAKQFKQRRIKLG-FTQADVGLALG 239 (417)
Q Consensus 209 ~~~ele~Fak~fK~rRI~lG-~TQ~dVg~aLg 239 (417)
|.+-.+.+..++|++.|.+. |.+..+++..|
T Consensus 19 Tk~i~~~I~~ELK~~~IsQa~FAk~vlnRsQG 50 (101)
T 2csf_A 19 TAAIYDEIQQEMKRAKVSQALFAKVAANKSQG 50 (101)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHhchh
Confidence 56666778888888888544 44333333333
No 231
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.25 E-value=33 Score=26.36 Aligned_cols=42 Identities=7% Similarity=-0.020 Sum_probs=21.5
Q ss_pred echhhHHHHhhhccC-----CCCCCHHHHHHHHHHcCCCCCchhccc
Q psy3400 304 IEVTVKGALETHFHK-----QPKPSAQEITTLADSLQLEKEVVRVWF 345 (417)
Q Consensus 304 fT~~Ql~~LE~~F~~-----n~yPS~~er~eLA~~LgLs~~qVqVWF 345 (417)
++.+++..+++.|.. +.+.+..+...+...+++++..|+.+|
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 344555555555532 234555665555555565554444433
No 232
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=21.12 E-value=15 Score=32.33 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=31.0
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQ 350 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR~ 350 (417)
+....+.|.+..| ..-...+||+..|+++..|...|.|+..
T Consensus 19 l~AA~~l~~~~G~-~~~tv~~IA~~agvs~~t~Y~~F~sK~~ 59 (231)
T 2qib_A 19 IGVALDLFSRRSP-DEVSIDEIASAAGISRPLVYHYFPGKLS 59 (231)
T ss_dssp HHHHHHHHHHSCG-GGCCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCc-hhcCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 4555566777665 3344678999999999999999999843
No 233
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=20.94 E-value=27 Score=29.49 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=30.0
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR 349 (417)
+......|.+..|-. -...+||+..|+++..|...|.|+-
T Consensus 23 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 23 STVGIELFTEQGFDA-TSVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHCTTT-SCHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcchHhhhCCCHH
Confidence 445555576666533 3367899999999999999999984
No 234
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=20.86 E-value=21 Score=35.78 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHhhhhhh
Q psy3400 210 SDDLEAFAKQFKQRRIKL 227 (417)
Q Consensus 210 ~~ele~Fak~fK~rRI~l 227 (417)
.+-++.|.+.|+...|+.
T Consensus 95 ~~Ra~dL~~af~Dp~i~a 112 (371)
T 3tla_A 95 KERAQEFNELVYNPDITC 112 (371)
T ss_dssp HHHHHHHHHHHTCTTEEE
T ss_pred HHHHHHHHHHhhCCCCCE
Confidence 455555656666655544
No 235
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=20.69 E-value=36 Score=29.15 Aligned_cols=42 Identities=26% Similarity=0.464 Sum_probs=26.1
Q ss_pred CCChHHHHHHHHHHHhhh-hhhccchhhhhhhhhcccccccccccccch
Q psy3400 207 APTSDDLEAFAKQFKQRR-IKLGFTQADVGLALGTLYGNVFSQTTICRF 254 (417)
Q Consensus 207 ~~~~~ele~Fak~fK~rR-I~lG~TQ~dVg~aLg~l~g~~~SQtTI~RF 254 (417)
..|.+|++.|++.++--+ +..|+||.++...+|. |..||+|.
T Consensus 53 L~T~~E~~aLs~R~eV~klL~~G~syreIA~~~g~------S~aTIsRv 95 (119)
T 3kor_A 53 LCTVNEIQSLSQRLQVAKMIKQGYTYATIEQESGA------STATISRV 95 (119)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCC------CHHHHHHH
T ss_pred hCCchHHHHHHHHHHHHHHHHcCCCHHHHHHHHCC------CHHHHHHH
Confidence 344455555555433222 3348999999887765 77788885
No 236
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=20.43 E-value=30 Score=25.13 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=17.6
Q ss_pred HHHHHHHcCCCCCchhccc
Q psy3400 327 ITTLADSLQLEKEVVRVWF 345 (417)
Q Consensus 327 r~eLA~~LgLs~~qVqVWF 345 (417)
..+||+.||++...|..|+
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4689999999999999998
No 237
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=20.42 E-value=79 Score=28.00 Aligned_cols=21 Identities=5% Similarity=-0.132 Sum_probs=13.5
Q ss_pred CCCCceechhhHHHHhhhccC
Q psy3400 298 RKKRTSIEVTVKGALETHFHK 318 (417)
Q Consensus 298 RRkRT~fT~~Ql~~LE~~F~~ 318 (417)
++.+..++.+++..|...+..
T Consensus 105 ~~~~~~lt~~e~~~l~~~~~~ 125 (290)
T 1a0p_A 105 QRLPKDLSEAQVERLLQAPLI 125 (290)
T ss_dssp ----CCCCHHHHHHHHHCSCT
T ss_pred CccCCCCCHHHHHHHHHHhcc
Confidence 345567899999888877654
No 238
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=20.39 E-value=69 Score=26.21 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=26.9
Q ss_pred ccchhhhhhhhhcccccccccccccchhcccCChhhhhhcchhH
Q psy3400 228 GFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL 271 (417)
Q Consensus 228 G~TQ~dVg~aLg~l~g~~~SQtTI~RFE~lqLS~knm~kLkPlL 271 (417)
+.+|.+|...+|. +.+||+|++.-. +..+|++.-+|
T Consensus 23 ~~gq~~vA~~iGV------~~StISR~k~~~--~~~~~~lLa~l 58 (97)
T 1xwr_A 23 MLGTEKTAEAVGV------DKSQISRWKRDW--IPKFSMLLAVL 58 (97)
T ss_dssp HHCHHHHHHHHTC------CTTTHHHHHHHH--HHHHHHHHHHH
T ss_pred HHhHHHHHHHhCC------CHHHHHHHHhhh--HHHHHHHHHHH
Confidence 4899999999877 788999987643 44677765544
No 239
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.05 E-value=15 Score=31.44 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=29.3
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHcCCCCCchhcccchhh
Q psy3400 309 KGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349 (417)
Q Consensus 309 l~~LE~~F~~n~yPS~~er~eLA~~LgLs~~qVqVWFQNRR 349 (417)
+..-...|.+..|-. -...+||+..|+++..|...|.|+.
T Consensus 15 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~gtlY~~F~sKe 54 (203)
T 2np5_A 15 AAALFDVAAESGLEG-ASVREVAKRAGVSIGAVQHHFSTKD 54 (203)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 344445566655432 3367889999999999999999984
Done!