RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3400
(417 letters)
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 75
Score = 150 bits (381), Expect = 7e-46
Identities = 55/75 (73%), Positives = 62/75 (82%)
Query: 205 EDAPTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 264
E+ ++LE FAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 1 EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 60
Query: 265 CKLKPLLQKWLEEAD 279
KLKPLL+KWL +A+
Sbjct: 61 SKLKPLLEKWLNDAE 75
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 72
Score = 148 bits (374), Expect = 8e-45
Identities = 47/69 (68%), Positives = 55/69 (79%)
Query: 211 DDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPL 270
LE FA +FK RRIKLG+TQ +VG AL ++G+ FSQTTICRFE LQLSFKN CKLK +
Sbjct: 3 RALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAI 62
Query: 271 LQKWLEEAD 279
L KWLEEA+
Sbjct: 63 LSKWLEEAE 71
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 73.8 bits (181), Expect = 2e-17
Identities = 36/57 (63%), Positives = 45/57 (78%)
Query: 299 KKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355
K+RT+I + K ALE HF + KPS+QEI +A+ L LEKEVVRVWFCNRRQ+EKR+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 57
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 72.2 bits (177), Expect = 9e-17
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 296 RKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354
+ + RT + L T + P+P A L + L V+RVWF N+R K+K+
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 72.0 bits (176), Expect = 1e-16
Identities = 38/61 (62%), Positives = 48/61 (78%)
Query: 296 RKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355
+++KRTSIE V+ +LET F K PKPS Q+IT +A+ L LEK+VVRVWFCNRRQK KR
Sbjct: 7 ARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66
Query: 356 T 356
+
Sbjct: 67 S 67
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 70.6 bits (173), Expect = 4e-16
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 296 RKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355
RKKR LE F + +A L L + V++WF NRR K K++
Sbjct: 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 69.5 bits (170), Expect = 5e-16
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 298 RKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354
RKKR LE + + + ++ + L + + +WF NRR KEK+
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 67.6 bits (165), Expect = 3e-15
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 296 RKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354
++R+ RT+ + LE F + P LA L + ++VWF NRR + ++
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 59
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 66.9 bits (163), Expect = 7e-15
Identities = 21/61 (34%), Positives = 27/61 (44%)
Query: 297 KRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMT 356
+RK+R LE F +Q SA E LA + L V++WF N R K KR
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61
Query: 357 P 357
Sbjct: 62 K 62
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 66.1 bits (161), Expect = 1e-14
Identities = 32/56 (57%), Positives = 44/56 (78%)
Query: 300 KRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355
KRTSIE ++ ALE F + KP++++IT +A+ L +EKEV+RVWF NRRQKEKR+
Sbjct: 1 KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 56
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 65.7 bits (160), Expect = 1e-14
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 298 RKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354
R++RT LE F + P +A L + VRVWF NRR K ++
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 58
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 65.3 bits (159), Expect = 2e-14
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 298 RKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355
RK RT ALE F ++ S E + SL L + V++WF NRR K KR+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 64.8 bits (158), Expect = 4e-14
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 298 RKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354
++ RTS ALE F + P LA + L + ++VWF NRR K +R
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 58
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 62.9 bits (153), Expect = 1e-13
Identities = 19/57 (33%), Positives = 24/57 (42%)
Query: 298 RKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354
+ + LE F Q S E LA LQL + V+ WF NRR K +R
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 62.9 bits (153), Expect = 1e-13
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 298 RKKRTSIEVTVKGALETHFHKQ---PKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354
R R + E LE+ F K P + + L + L + ++ W NRR+KEK
Sbjct: 1 RGHRFTKENVR--ILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
Query: 355 MT 356
+T
Sbjct: 59 IT 60
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 62.6 bits (152), Expect = 2e-13
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 301 RTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEK 353
++SI + LE F ++ +++E +A + VRVWF N+R + K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 61.6 bits (149), Expect = 6e-13
Identities = 22/60 (36%), Positives = 29/60 (48%)
Query: 296 RKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355
+KRK+R LE F +Q SA E LA ++L V++WF N R K KR
Sbjct: 8 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 60.9 bits (148), Expect = 7e-13
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 311 ALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354
LE FH + + +A +L L + +++WF NRR K K+
Sbjct: 11 ELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 54
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 61.6 bits (149), Expect = 7e-13
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
Query: 298 RKKRTSIEVTVKGALETHFHKQPKPSAQEITTLA---------------DSLQLEKEVVR 342
R R + +E++F++ P + +A D ++ V
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 60
Query: 343 VWFCNRRQKEKR 354
WF NRR++ KR
Sbjct: 61 NWFANRRKEIKR 72
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 59.9 bits (145), Expect = 2e-12
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 298 RKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRMT 356
R+ RT+ + LE HF + +A + L+ L L V++WF NRR++ K +
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 60
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 60.8 bits (147), Expect = 2e-12
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 273 KWLEEADSTTGSPTSIDKIAAQGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLAD 332
W++ + + + G RT+ LE FH S +A
Sbjct: 5 DWMKVKRNPPKTAKVSEP--GLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAA 62
Query: 333 SLQLEKEVVRVWFCNRRQKEKRM 355
+L+L + V++WF NRR K+K+
Sbjct: 63 TLELNETQVKIWFQNRRMKQKKR 85
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 58.6 bits (142), Expect = 5e-12
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 297 KRKKRTSIEVTVKGALETHFHKQ---PKPSAQEITTLADSLQLEKEVVRVWFCNRRQK 351
+ KR + + + + P P+ E +A L V WF N R++
Sbjct: 2 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 59
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 57.9 bits (140), Expect = 8e-12
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 299 KKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQK 351
+ RT+ L+ F++ + + L+ L L + +++WF N R K
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 57.2 bits (138), Expect = 1e-11
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 299 KKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354
+ RT+ G LE F+K+ S LA L L + ++VWF NRR K+KR
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 57.3 bits (138), Expect = 2e-11
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 298 RKKRTSIEVTVKGALETHF---HKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354
R+KR + L +F P PS + LA + V WF N+R + K+
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 355 MTP 357
Sbjct: 62 NIG 64
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 57.0 bits (137), Expect = 2e-11
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 293 AQGRKRKKRTSIEVTVKGALETHFHK-QPKPSAQEITTLADSLQLEKEVVRVWFCNRRQK 351
+ + RT I + G L++ H P + I TL+ L L K + +F N+R
Sbjct: 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62
Query: 352 EKRMTPP 358
K P
Sbjct: 63 VKHSGPS 69
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 54.8 bits (132), Expect = 9e-11
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 295 GRKRKKRTSIEVTVKGALETHFHKQPK-PSAQEITTLADSLQLEKEVVRVWFCNRRQKEK 353
G K +E LE F K P + + L+ L ++ WF +RR ++K
Sbjct: 1 GIKDSPVNKVEPND--TLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 54.3 bits (131), Expect = 1e-10
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 312 LETHFHKQ-PKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKR 354
LE F P + + L+ L + ++ WF RR +EK
Sbjct: 8 LEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 53.7 bits (129), Expect = 2e-10
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 301 RTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRR 349
R + L F + +PS + T++ L LE V +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 53.5 bits (128), Expect = 5e-10
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 6/78 (7%)
Query: 283 GSPTSIDKIAAQGRKRKKRTSIEVT--VKGALETHFHKQ----PKPSAQEITTLADSLQL 336
GS S + KR + T K + + K + +
Sbjct: 1 GSSGSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGV 60
Query: 337 EKEVVRVWFCNRRQKEKR 354
++V+++W N +
Sbjct: 61 RRQVLKIWMHNNKNSGPS 78
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 49.3 bits (117), Expect = 1e-08
Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 296 RKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM 355
+K K++T+ ++ V L+ F + +E+ L +L + + WF +++ +
Sbjct: 6 QKFKEKTAEQLRV---LQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 62
Query: 356 TP 357
Sbjct: 63 EE 64
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 45.0 bits (106), Expect = 4e-07
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 298 RKKRTSIEVTVKGALETHFHKQPK-PSAQEITTLADSLQLEKEVVRVWFCNRRQKEKRM- 355
+ ++ LE +F+K K P + +A L +E + WF R + +R
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
Query: 356 TPPNTLGGPQD 366
P+ D
Sbjct: 62 GLPSECRSVTD 72
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 44.0 bits (103), Expect = 1e-06
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 21/66 (31%)
Query: 311 ALETHFHKQPKPSAQEITTLADSLQLEKEV---------------------VRVWFCNRR 349
L + +Q PS +E TL + + + V WF NRR
Sbjct: 11 ILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 70
Query: 350 QKEKRM 355
++E
Sbjct: 71 KEEAFR 76
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 42.4 bits (99), Expect = 4e-06
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 293 AQGRKRKKRTSIEVTVKGALETHFHKQPKPSAQEITTLADSLQLEKEVVRVWFCNRRQKE 352
+ G K++T ++ + L++ F + ++ L L + + WF + R
Sbjct: 2 SSGSSGKRKTKEQLAI---LKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYAL 58
Query: 353 KRMTP---PNTLGGPQDG 367
K + GP G
Sbjct: 59 KHGQLKWFRDNASGPSSG 76
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus
caldolyticus [TaxId: 1394]}
Length = 77
Score = 34.0 bits (78), Expect = 0.003
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 214 EAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFE 255
F + K+ R + G +Q ++ G +T I E
Sbjct: 9 RKFGRTLKKIRTQKGVSQEELADLAG------LHRTYISEVE 44
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller
protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Length = 69
Score = 31.6 bits (72), Expect = 0.018
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 212 DLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFE 255
DL F ++ ++ R G +Q + G ++ + E
Sbjct: 6 DLVKFGQRLRELRTAKGLSQETLAFLSG------LDRSYVGGVE 43
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain
{Bacillus subtilis [TaxId: 1423]}
Length = 68
Score = 30.1 bits (68), Expect = 0.061
Identities = 6/39 (15%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 217 AKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFE 255
++ KQ R + G++ +++ G +++ + E
Sbjct: 3 GQRIKQYRKEKGYSLSELAEKAG------VAKSYLSSIE 35
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal
domain {Nitrosomonas europaea [TaxId: 915]}
Length = 67
Score = 30.1 bits (68), Expect = 0.075
Identities = 5/38 (13%), Positives = 11/38 (28%), Gaps = 6/38 (15%)
Query: 218 KQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFE 255
+ F + + ALG S+ + +
Sbjct: 4 EMFGDWMHRNNLSLTTAAEALGI------SRRMVSYYR 35
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain
{Salmonella bacteriophage P22 [TaxId: 10754]}
Length = 66
Score = 29.4 bits (66), Expect = 0.13
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 214 EAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFE 255
+ ++ + RR KL QA +G +G S I ++E
Sbjct: 2 QLMGERIRARRKKLKIRQAALGKMVG------VSNVAISQWE 37
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Length = 65
Score = 28.3 bits (63), Expect = 0.31
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 213 LEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICR 253
++ +++ K+RRI L TQ ++ G Q +I
Sbjct: 1 MQTLSERLKKRRIALKMTQTELATKAG------VKQQSIQL 35
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 264
Score = 30.4 bits (67), Expect = 0.39
Identities = 22/194 (11%), Positives = 39/194 (20%), Gaps = 23/194 (11%)
Query: 45 HHHHHHHHHQVPSSPSPNGHPVSLSAAHNPWVSLQPGAGADPWSSSMPGIHNHHHPHHHQ 104
H H H G + P +
Sbjct: 72 THAHLDHTGGFAEIKKETGAQLVAGERDKPL-----------LEGGYYPGDEKNEDLAFP 120
Query: 105 QSPVDIKPPPDMHRTSHQHGGMGSPHSWHTPVVSSHYIPSGNSGAASPLQHHSAYHV--N 162
VD T H+P +S + + + + V N
Sbjct: 121 AVKVDRAVKEGDRVTLGDTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVALN 180
Query: 163 VMNGMLHHHQPSPQLHHSLRDIQAHSPSYSQSQHPDAPSGSEEDAPTSD----------D 212
+ G + + +A HP+ + A D +
Sbjct: 181 RLVGQPTYAGIVDDYRATFAKAKAMKIDVLLGPHPEVYGMQAKRAEMKDGAPNPFIKPGE 240
Query: 213 LEAFAKQFKQRRIK 226
L +A + K
Sbjct: 241 LVTYATSLSEDFDK 254
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow
(Bos taurus) [TaxId: 9913]}
Length = 284
Score = 29.3 bits (65), Expect = 0.79
Identities = 18/160 (11%), Positives = 33/160 (20%), Gaps = 18/160 (11%)
Query: 43 YQHHHHHHHHHQVPSSPSPNGHPVSLSAAHNPWVSLQPGAGADPWSSSMPGIHNHHHPHH 102
Q H + + PV + + A G N +
Sbjct: 81 MQGRFHMYEGY----PFWKVTFPVRVFRLLGVETLVVTNA---------AGGLNPNFEVG 127
Query: 103 HQQSPVDIKPPPDMHRTSHQHGGMGSPHSWHTPVVSSHYIPSGNS---GAASPLQHHSAY 159
D P + G P +S Y +
Sbjct: 128 DIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQREL 187
Query: 160 HVNVMNGMLHHHQPSPQLHHSLRDIQAHSPSYSQSQHPDA 199
+ + + LR++ A + S P+
Sbjct: 188 QEGTYVMLGGPNFETVAECRLLRNLGAD--AVGMSTVPEV 225
>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga
maritima [TaxId: 2336]}
Length = 420
Score = 29.4 bits (64), Expect = 0.88
Identities = 12/161 (7%), Positives = 35/161 (21%), Gaps = 1/161 (0%)
Query: 19 GMNIVNTSIGYPSPRSVPDSGELKYQHHHHHHHHHQVPSSPSPNGHPVSLSAAHNPWVSL 78
+ ++ G P P + P + +H + G P L +
Sbjct: 37 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDP-VLKQQILKLLER 95
Query: 79 QPGAGADPWSSSMPGIHNHHHPHHHQQSPVDIKPPPDMHRTSHQHGGMGSPHSWHTPVVS 138
G + + + + + +D + + ++ VV
Sbjct: 96 MYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVV 155
Query: 139 SHYIPSGNSGAASPLQHHSAYHVNVMNGMLHHHQPSPQLHH 179
+ + + + +
Sbjct: 156 PLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPA 196
>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase,
MSAT {Thermococcus profundus [TaxId: 49899]}
Length = 403
Score = 29.3 bits (64), Expect = 1.1
Identities = 14/170 (8%), Positives = 35/170 (20%), Gaps = 2/170 (1%)
Query: 18 DGMNIVNTSIGYPSPRSVPDSGELKYQHHHHHHHHHQVPSSPSPNGHPVSLSAAHNPWVS 77
+ ++++ + G P+P + P K H + + G L A W+
Sbjct: 27 ETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFT-PLRLALARWME 85
Query: 78 LQPGAGADPWSSSMPGIHNHHHPHHHQQSPVDIKPPPDMHRTSH-QHGGMGSPHSWHTPV 136
+ + P T +
Sbjct: 86 KRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISI 145
Query: 137 VSSHYIPSGNSGAASPLQHHSAYHVNVMNGMLHHHQPSPQLHHSLRDIQA 186
+ + + + Q + S+ +
Sbjct: 146 PLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKK 195
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter
gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}
Length = 262
Score = 28.4 bits (62), Expect = 1.6
Identities = 18/198 (9%), Positives = 41/198 (20%), Gaps = 17/198 (8%)
Query: 37 DSGELKYQHHHHHHHHHQVPSSPSPNGHPVSLSAAHNPWVSLQPGAGADPWSSSMPGIHN 96
+ K H H H S + G +D ++ +
Sbjct: 59 KFSDTKILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYF 118
Query: 97 HHHPHHHQQSPVDIKPPPDMHRTSHQHGGMGSPHSWHTPVVSSHYIPSGNSGAASPLQH- 155
VD HT ++ + + G
Sbjct: 119 TQS-------TVDKVLHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVII 171
Query: 156 --HSAYHVNVMNGMLHHHQPSPQLHHSLRDIQAHSPSYSQSQHPDAPSGSEEDAPTSD-- 211
+ + + + + HS++ +++ H + S
Sbjct: 172 GSIGVNPGYKLVDNITYPKIAEDYKHSIKVLESMRCDIFLGSHAGMFDLKNKYVLLSKGQ 231
Query: 212 -----DLEAFAKQFKQRR 224
D +Q+
Sbjct: 232 NNPFVDPTGCKNYIEQKA 249
>d1qwza_ b.100.1.1 (A:) Sortase B {Staphylococcus aureus [TaxId:
1280]}
Length = 235
Score = 28.0 bits (62), Expect = 1.9
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 45 HHHHHHHHHQV 55
HHHHHHHHH
Sbjct: 2 HHHHHHHHHHS 12
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain
{Bacteriophage lambda [TaxId: 10710]}
Length = 87
Score = 26.2 bits (57), Expect = 2.5
Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 208 PTSDDLEAFAKQ----FKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFE 255
P + + A++ +++++ +LG +Q V +G Q+ +
Sbjct: 1 PLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMG------MGQSGVGALF 46
>d1psza_ c.92.2.2 (A:) Pneumococcal surface antigen PssA
{Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
Length = 286
Score = 27.6 bits (60), Expect = 2.6
Identities = 8/116 (6%), Positives = 23/116 (19%)
Query: 35 VPDSGELKYQHHHHHHHHHQVPSSPSPNGHPVSLSAAHNPWVSLQPGAGADPWSSSMPGI 94
V D ++ Y + + + + + P +
Sbjct: 95 VSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYT 154
Query: 95 HNHHHPHHHQQSPVDIKPPPDMHRTSHQHGGMGSPHSWHTPVVSSHYIPSGNSGAA 150
+ + P + + ++ P I + G
Sbjct: 155 DKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTP 210
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 27.5 bits (59), Expect = 3.3
Identities = 25/199 (12%), Positives = 42/199 (21%), Gaps = 21/199 (10%)
Query: 15 SDLDGMN---IVNTSIGYPSPRSVPDSGELKY------------QHHHHHHHHHQVPSSP 59
SD DG N + + SP PD +L Y Q +
Sbjct: 24 SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR 83
Query: 60 SPNGHPVSLSAAHNPWVSLQPGAGADPWSSSMPGIHNHHHPHHHQQSPVDIKPPPDMHRT 119
S + + + G+ G + P
Sbjct: 84 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAF 143
Query: 120 SHQHGGMGS---PHSWHTPVVSSHYIPSGNSGAASPLQHHSAYHVNVMNGMLHHH---QP 173
+ G + + S N A V+ G H
Sbjct: 144 TSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 203
Query: 174 SPQLHHSLRDIQAHSPSYS 192
+ + +PS +
Sbjct: 204 TGGVQVLSSTFLDETPSLA 222
>d1rmja_ g.28.1.1 (A:) Insulin-like growth factor binding protein
6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 26.1 bits (57), Expect = 3.5
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 45 HHHHHHHHHQVPSSPSPN 62
+HHHHHH + +P++ +
Sbjct: 3 YHHHHHHDYDIPTTENLY 20
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 334
Score = 27.4 bits (59), Expect = 3.8
Identities = 14/145 (9%), Positives = 32/145 (22%), Gaps = 6/145 (4%)
Query: 14 ASDLDGMNIVNTSIGYPSPRSVPDSGELKYQHHHHHHHHHQVPSSPSPNGHPVSLSAAHN 73
+ + ++I + S G D + + S + + A+ N
Sbjct: 133 GLNPNHIHIYSASWGPE-----DDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGN 187
Query: 74 PWVSLQPGAGADPWSSSMPGIHNHHHPHHHQQSPVDIKPPPDMHRTSHQHGGMGSPHSWH 133
D +++S+ + + T
Sbjct: 188 GGRE-HDSCNCDGYTNSIYTLSISSATQFGNVPWYSEACSSTLATTYSSGNQNEKQIVTT 246
Query: 134 TPVVSSHYIPSGNSGAASPLQHHSA 158
+G S +A A
Sbjct: 247 DLRQKCTESHTGTSASAPLAAGIIA 271
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas
maltophilia [TaxId: 40324]}
Length = 266
Score = 27.3 bits (59), Expect = 3.9
Identities = 28/196 (14%), Positives = 53/196 (27%), Gaps = 15/196 (7%)
Query: 37 DSGELKYQHHHHHHHHHQVPSSPSPNGHPVSLSAAHNPWVSLQPGAGADPWSSSMPGIHN 96
+L+ H H H P + ++A V L G D GI
Sbjct: 72 TPRDLRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLARGGSDDLH--FGDGITY 129
Query: 97 HHHPHHHQQSPVDIKPPPDMHRTSHQHGGMGSPHSWHTPVVSSHYIPSGNSGAASPLQHH 156
++ + T+H G HTP ++ +G + +
Sbjct: 130 PPANADRIVMDGEVITVGGIVFTAHFMAG-------HTPGSTAWTWTDTRNGKPVRIAYA 182
Query: 157 SAYHVNVMNGMLHHHQPSP--QLHHSLRDIQAHSPSYSQSQHPDAPSGSEEDAPTSDD-- 212
+ + P S ++A + HP A + +
Sbjct: 183 DSLSAPGYQLQGNPRYPHLIEDYRRSFATVRALPCDVLLTPHPGASNWDYAAGARAGAKA 242
Query: 213 --LEAFAKQFKQRRIK 226
+A+A +Q+
Sbjct: 243 LTCKAYADAAEQKFDG 258
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.128 0.401
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,657,790
Number of extensions: 78847
Number of successful extensions: 542
Number of sequences better than 10.0: 1
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 76
Length of query: 417
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 329
Effective length of database: 1,199,356
Effective search space: 394588124
Effective search space used: 394588124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.7 bits)