BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3403
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X7B|A Chain A, Crystal Structure Of The N-Terminal Acetylase Ard1 From
Sulfolobus Solfataricus P2
Length = 168
Score = 62.0 bits (149), Expect = 8e-10, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 72/126 (57%), Gaps = 8/126 (6%)
Query: 393 IIKLIQKDLSEPYSIYTYRYFIHNWPKFCFLAMDEQKCVGAIVCKLD-----IHR--KVI 445
IIK+ + L E Y Y + + + F+A+ + VG I+ +++ I + ++
Sbjct: 26 IIKINRLTLPENYPYYFFVEHLKEYGLAFFVAIVDNSVVGYIMPRIEWGFSNIKQLPSLV 85
Query: 446 RRGYIAMLAVDENYRKRKIGSNLVLKAIRAMVAD-DADEVVLETEITNRPALKLYENLGF 504
R+G++ +AV E YR++ I + L+ ++++M D +A+E+ LE ++N PA+ LYE L F
Sbjct: 86 RKGHVVSIAVLEEYRRKGIATTLLEASMKSMKNDYNAEEIYLEVRVSNYPAIALYEKLNF 145
Query: 505 VRDKRL 510
+ K L
Sbjct: 146 KKVKVL 151
>pdb|3PP9|A Chain A, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|B Chain B, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|C Chain C, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
Length = 187
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 409 TYRYFIHNWPKFCFLAMDEQKCVGAIVCKLDIHRKVIRRGYIAMLAVDENYRKRKIGSNL 468
Y +I+ + ++A+ + +G IV K + + YI + VD+ YR +G L
Sbjct: 66 VYNEYINKPNQIIYIALLHNQIIGFIVLKKNWNN----YAYIEDITVDKKYRTLGVGKRL 121
Query: 469 VLKAIRAMVADDADEVVLETEITNRPALKLYENLGFV 505
+ +A + + + LET+ N A K YE GFV
Sbjct: 122 IAQAKQWAKEGNXPGIXLETQNNNVAACKFYEKCGFV 158
>pdb|3TFY|A Chain A, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|B Chain B, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|C Chain C, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
Length = 169
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 423 LAMDEQKCVGAIVCKLDIHRKVIRRGYIAMLAVDENYRKRKIGSNLVLKAIRAMVADDA- 481
LA VGA+ C++D H + +R YI L YR+ IG+ ++ + D
Sbjct: 48 LAYFNDIAVGAVCCRVD-HSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTF 106
Query: 482 DEVVLETEITNRPALKLYENLGF 504
D + L +I+N A+ Y GF
Sbjct: 107 DNIYLHVQISNESAIDFYRKFGF 129
>pdb|2OB0|A Chain A, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|B Chain B, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|C Chain C, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2PSW|A Chain A, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|B Chain B, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|C Chain C, Human Mak3 Homolog In Complex With Coa
Length = 170
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 423 LAMDEQKCVGAIVCKLDIHRKVIRRGYIAMLAVDENYRKRKIGSNLVLKAIRAMVADDA- 481
LA VGA+ C++D H + +R YI L YR+ IG+ + + D
Sbjct: 49 LAYFNDIAVGAVCCRVD-HSQNQKRLYIXTLGCLAPYRRLGIGTKXLNHVLNICEKDGTF 107
Query: 482 DEVVLETEITNRPALKLYENLGF 504
D + L +I+N A+ Y GF
Sbjct: 108 DNIYLHVQISNESAIDFYRKFGF 130
>pdb|2CNM|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNS|A Chain A, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|B Chain B, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|C Chain C, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNT|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|D Chain D, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea
Length = 160
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 382 VSYKSELQMPDIIKLIQKDLSEPYSIYTYRYFIHNWPKFCFLAMDEQKCVGAIVCKLDIH 441
+S S +P ++ Q+ + P+S T+ F + ++ L + + A I
Sbjct: 4 ISILSTTDLPAAWQIEQRAHAFPWSEKTF--FGNQGERYLNLKLTADDRMAAFA----IT 57
Query: 442 RKVIRRGYIAMLAVDENYRKRKIGSNLVLKAIRAMVADDADEVVLETEITNRPALKLYEN 501
+ V+ + +AVD ++++R +G L+ I + + LE +N A+ LYE+
Sbjct: 58 QVVLDEATLFNIAVDPDFQRRGLGRMLLEHLIDELETRGVVTLWLEVRASNAAAIALYES 117
Query: 502 LGF 504
LGF
Sbjct: 118 LGF 120
>pdb|1TIQ|A Chain A, Crystal Structure Of An Acetyltransferase (Paia) In
Complex With Coa And Dtt From Bacillus Subtilis,
Northeast Structural Genomics Target Sr64.
pdb|1TIQ|B Chain B, Crystal Structure Of An Acetyltransferase (Paia) In
Complex With Coa And Dtt From Bacillus Subtilis,
Northeast Structural Genomics Target Sr64
Length = 180
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 397 IQKDLSEPYSIYTYRYFIHNWPKFCFLAMDEQKCVGAIVCKLDIHRKVIRRGYIAMLAVD 456
++K+LS S + + YF H + + +D+ + L+I R I+
Sbjct: 50 LEKELSNXSSQFFFIYFDHEIAGYVKVNIDDAQSEEXGAESLEIERIYIKN--------- 100
Query: 457 ENYRKRKIGSNLVLKAIRAMVADDADEVVLETEITNRPALKLYENLGFVR 506
+++K +G +L+ KAI + + + L N A+ Y+ GFV+
Sbjct: 101 -SFQKHGLGKHLLNKAIEIALERNKKNIWLGVWEKNENAIAFYKKXGFVQ 149
>pdb|3D8P|A Chain A, Crystal Structure Of Acetyltransferase Of Gnat Family
(Np_373092.1) From Staphylococcus Aureus Mu50 At 2.20 A
Resolution
pdb|3D8P|B Chain B, Crystal Structure Of Acetyltransferase Of Gnat Family
(Np_373092.1) From Staphylococcus Aureus Mu50 At 2.20 A
Resolution
Length = 163
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 413 FIHNWPKFCFLAMDEQKCVGAI-VCKLDIHRKVIRRGYIAMLAVDENYRKRKIGSNLVLK 471
++++ +F + Q VG I + +LD + +++ + VD+ YR KIG L+ K
Sbjct: 48 YLNSGGQFWLAINNHQNIVGTIGLIRLDNNXSALKKXF-----VDKGYRNLKIGKKLLDK 102
Query: 472 AIRAMVADDADEVVLETEITNRPALKLYENLGFVRDKR 509
I + D + L T A Y N GF KR
Sbjct: 103 VIXTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKR 140
>pdb|3EC4|A Chain A, Crystal Structure Of Putative Acetyltransferase From The
Gnat Family (yp_497011.1) From Novosphingobium
Aromaticivorans Dsm 12444 At 1.80 A Resolution
pdb|3EC4|B Chain B, Crystal Structure Of Putative Acetyltransferase From The
Gnat Family (yp_497011.1) From Novosphingobium
Aromaticivorans Dsm 12444 At 1.80 A Resolution
Length = 228
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 391 PDIIKLIQKDLSE-----------PYSIYTYRYFIHNWPKFCFLAMDEQKCVGAIVCKLD 439
P I+ L + D+ E P++ T+RY +F + +D + A +
Sbjct: 99 PGIVALGETDVPEXTALALATEPGPWASGTWRYG-----QFYGVRIDGRLAAXAG----E 149
Query: 440 IHRKVIRRGYIAMLAVDENYRKRKIGSNLVLKAIRAMVADDADEVVLETEITNRPALKLY 499
R ++ + YR R + + L+ K I A A + L + +N A++LY
Sbjct: 150 RXRPAPNLAEVSGVCTWPEYRGRGLAARLIRKVI-AGXAARGEVPYLHSYASNASAIRLY 208
Query: 500 ENLGFVRDKR 509
E+LGF R +R
Sbjct: 209 ESLGF-RARR 217
>pdb|1VKC|A Chain A, Putative Acetyl Transferase From Pyrococcus Furiosus
pdb|1VKC|B Chain B, Putative Acetyl Transferase From Pyrococcus Furiosus
Length = 158
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 445 IRRGYIAMLAVDENYRKRKIGSNLVLKAIRAMVADDADEVVLETEITNRPALKLYENLGF 504
++ YI + V + R IGS L+ KA A ++VL EI N PA+K YE G+
Sbjct: 89 VKIAYIYDIEVVKWARGLGIGSALLRKAEEWAKERGAKKIVLRVEIDN-PAVKWYEERGY 147
>pdb|1YVK|A Chain A, Crystal Structure Of The Bacillis Subtilis
Acetyltransferase In Complex With Coa, Northeast
Structural Genomics Target Sr237.
pdb|1YVK|B Chain B, Crystal Structure Of The Bacillis Subtilis
Acetyltransferase In Complex With Coa, Northeast
Structural Genomics Target Sr237.
pdb|1YVK|C Chain C, Crystal Structure Of The Bacillis Subtilis
Acetyltransferase In Complex With Coa, Northeast
Structural Genomics Target Sr237.
pdb|1YVK|D Chain D, Crystal Structure Of The Bacillis Subtilis
Acetyltransferase In Complex With Coa, Northeast
Structural Genomics Target Sr237
Length = 163
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 450 IAMLAVDENYRKRKIGSNLVLKAIRAMVADDADEVVLETEITNRPALKLYENLGF 504
I +AV E+ +K+ G LVL AI AD + + T ++ L LY+ GF
Sbjct: 66 IVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGF 120
>pdb|2FE7|A Chain A, The Crystal Structure Of A Probable N-Acetyltransferase
From Pseudomonas Aeruginosa
pdb|2FE7|B Chain B, The Crystal Structure Of A Probable N-Acetyltransferase
From Pseudomonas Aeruginosa
Length = 166
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 413 FIHNWPKFCFLAMDEQKCVGAIVCKLDIHRKVIRRG-YIAMLAVDENYRKRKIGSNLVLK 471
F P + + E + +G V + R G Y+ L V YR G L+ +
Sbjct: 53 FAEGSPTRALMCLSEGRPIGYAVFFYSYSTWLGRNGIYLEDLYVTPEYRGVGAGRRLLRE 112
Query: 472 AIRAMVADDADEVVLETEITNRPALKLYENLG 503
R VA+D + N+PA+ Y ++G
Sbjct: 113 LAREAVANDCGRLEWSVLDWNQPAIDFYRSIG 144
>pdb|2AE6|A Chain A, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|B Chain B, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|C Chain C, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|D Chain D, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
Length = 166
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 422 FLAMDEQKCVGAIVCKLDIHRKVIRRGYIAMLAVDENYRKRKIGSNLVLKAIRAMVADDA 481
F+A+ Q+ G I ++ ++ + V +++ + IG +L+ + + D A
Sbjct: 56 FVAISGQQLAGFIEVHPPTSLAAHQKQWLLSIGVSPDFQDQGIGGSLL-----SYIKDXA 110
Query: 482 D-----EVVLETEITNRPALKLYENLGFVRD 507
+ ++ L TN+ A++ YE GFV++
Sbjct: 111 EISGIHKLSLRVXATNQEAIRFYEKHGFVQE 141
>pdb|3FB3|A Chain A, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3FB3|B Chain B, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3I3G|A Chain A, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
pdb|3I3G|B Chain B, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
Length = 161
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 448 GYIAMLAVDENYRKRKIGSNLVLKAIRAMVADDADEVVLETEITNRPALKLYENLGFVRD 507
G+I + VD +YR +G L++ + +V+L+ ++ +L YE LGF
Sbjct: 97 GHIEDVVVDPSYRGAGLGKALIMDLCEISRSKGCYKVILD---SSEKSLPFYEKLGFRAH 153
Query: 508 KR 509
+R
Sbjct: 154 ER 155
>pdb|1U6M|A Chain A, The Crystal Structure Of Acetyltransferase
pdb|1U6M|B Chain B, The Crystal Structure Of Acetyltransferase
pdb|1U6M|C Chain C, The Crystal Structure Of Acetyltransferase
pdb|1U6M|D Chain D, The Crystal Structure Of Acetyltransferase
Length = 199
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 449 YIAMLAVDENYRKRKIGSNLVLKAIRAMVADDADEVVLETEITNRPALKLYENLGF 504
Y+ ++VDE +R IGS L+ A + L + N A KLY + GF
Sbjct: 114 YLDTISVDERFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGF 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,438,342
Number of Sequences: 62578
Number of extensions: 507603
Number of successful extensions: 980
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 970
Number of HSP's gapped (non-prelim): 23
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)