RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3403
(511 letters)
>gnl|CDD|223532 COG0456, RimI, Acetyltransferases [General function prediction
only].
Length = 177
Score = 88.1 bits (218), Expect = 2e-20
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 400 DLSEPYSIYTYRYFIHNWPKFCFLA-------MDEQKCVGAIVC-KLDIHRKVIRRGYIA 451
D+ P+S + + P+ +A + + K VG ++ +D G+I
Sbjct: 36 DIRLPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRPSADHEGHIY 95
Query: 452 MLAVDENYRKRKIGSNLVLKAIRAMVADD-ADEVVLETEITNRPALKLYENLGFVRDKRL 510
LAVD YR R IG L+ +A+ + AD++VLE +N A+ LY LGF K
Sbjct: 96 NLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIR 155
Query: 511 F 511
Sbjct: 156 K 156
>gnl|CDD|216007 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 80
Score = 77.7 bits (192), Expect = 8e-18
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 424 AMDEQKCVGAIVCKLDIHRKVIRRGYIAMLAVDENYRKRKIGSNLVLKAIRAMVADDADE 483
A ++ + VG + I LAVD YR + IG+ L+
Sbjct: 1 AEEDGELVGFASLSIIDEEG--NVAEIEGLAVDPEYRGKGIGTALLEALEEYARELGLKR 58
Query: 484 VVLETEITNRPALKLYENLGFV 505
+ LE N A+ LYE LGF
Sbjct: 59 IELEVLEDNEAAIALYEKLGFK 80
>gnl|CDD|173926 cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes
that characteristically catalyze the transfer of an acyl
group to a substrate. NAT (N-Acyltransferase) is a
large superfamily of enzymes that mostly catalyze the
transfer of an acyl group to a substrate and are
implicated in a variety of functions, ranging from
bacterial antibiotic resistance to circadian rhythms in
mammals. Members include GCN5-related
N-Acetyltransferases (GNAT) such as Aminoglycoside
N-acetyltransferases, Histone N-acetyltransferase (HAT)
enzymes, and Serotonin N-acetyltransferase, which
catalyze the transfer of an acetyl group to a substrate.
The kinetic mechanism of most GNATs involves the ordered
formation of a ternary complex: the reaction begins with
Acetyl Coenzyme A (AcCoA) binding, followed by binding
of substrate, then direct transfer of the acetyl group
from AcCoA to the substrate, followed by product and
subsequent CoA release. Other family members include
Arginine/ornithine N-succinyltransferase, Myristoyl-CoA:
protein N-myristoyltransferase, and
Acyl-homoserinelactone synthase which have a similar
catalytic mechanism but differ in types of acyl groups
transferred. Leucyl/phenylalanyl-tRNA-protein
transferase and FemXAB nonribosomal peptidyltransferases
which catalyze similar peptidyltransferase reactions are
also included.
Length = 65
Score = 58.1 bits (141), Expect = 4e-11
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 421 CFLAMDEQKCVGAIVCKLDIHRKVIRRGYIAMLAVDENYRKRKIGSNLVLKAIRAMVADD 480
+A D+ + VG YI LAV YR + IGS L+ A
Sbjct: 1 FLVAEDDGEIVGFASLS--PDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERG 58
Query: 481 ADEVVLE 487
A + LE
Sbjct: 59 AKRLRLE 65
>gnl|CDD|222185 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 79
Score = 45.3 bits (108), Expect = 2e-06
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 420 FCFLAMDEQKCVGAIVCKLDIHRKVIRRGYIAMLAVDENYRKRKIGSNLVLKAIRAMVAD 479
+A D+ + VG + + YI +AVD YR + GS L+ + +
Sbjct: 4 HFLVAYDDGEIVGFLRLRPIGEG-----AYIGGVAVDPEYRGQGYGSKLLRHLLEEL--- 55
Query: 480 DADEVVLETEITNRPALKLYENLGFVR 506
+ L + A K YE LGF
Sbjct: 56 GEKPLFL---FAHPQAKKFYEKLGFEP 79
>gnl|CDD|233477 TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase.
Members of this model belong to the GCN5-related
N-acetyltransferase (GNAT) superfamily. This model
covers prokarotes and the archaea. The seed contains a
characterized accession for Gram negative E. coli. An
untraceable characterized accession (PIR|S66013) for
Gram positive B. subtilis scores well (205.0) in the
full alignment. Characterized members are lacking in the
archaea. Noise cutoff (72.4) was set to exclude M. loti
paralog of rimI. Trusted cutoff (80.0) was set at next
highest scoring member in the mini-database [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 131
Score = 46.6 bits (111), Expect = 2e-06
Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 391 PDIIKLIQKDLSEPYSIYTYRYFIHNWPKFCFLAMDEQKCVGAIVCKLDIHRKVIRRGYI 450
++++ + P++ + + N+ LA K VG ++ + +I
Sbjct: 3 KAVLEIEAAAFAFPWTEAQFAEELANYHLCYLLARIGGKVVGYAGVQIVLDE-----AHI 57
Query: 451 AMLAVDENYRKRKIGSNLVLKAIRAMVADDADEVVLETEITNRPALKLYENLGF 504
+AV Y+ + IG L+ + I +E+ LE ++N A LY+ LGF
Sbjct: 58 LNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGF 111
>gnl|CDD|132489 TIGR03448, mycothiol_MshD, mycothiol synthase. Members of this
family are MshD, the acetyltransferase that catalyzes
the final step of mycothiol biosynthesis in various
members of the Actinomyctes, Mycothiol replaces
glutathione in these species [Biosynthesis of cofactors,
prosthetic groups, and carriers, Glutathione and
analogs].
Length = 292
Score = 47.8 bits (114), Expect = 6e-06
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 448 GYIAMLAVDENYRKRKIGSNLVLKAIRAMVADDADEVVLETEITNRPALKLYENLGFVR 506
G + ++ VD + R +G L L + + A V+L E N A++ YE LGF
Sbjct: 227 GEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLGFTV 285
>gnl|CDD|223530 COG0454, WecD, Histone acetyltransferase HPA2 and related
acetyltransferases [Transcription / General function
prediction only].
Length = 156
Score = 46.0 bits (106), Expect = 7e-06
Identities = 26/156 (16%), Positives = 44/156 (28%), Gaps = 23/156 (14%)
Query: 375 MIGGIKYVSYKSELQMPDIIKLIQKDLSEPYSIYTYRYFIHNWPKFCFLAMDE------- 427
M + ++ L + + LA+
Sbjct: 1 MEAELVALADADLDAAAAGAALTARLFAALAEALLRLLEAE----IGLLAVAPEYRGKGL 56
Query: 428 -----QKCVGAIVCKLDIHRKVIRRGYIAMLAVDENYRKRKIGSNLVLKAIR--AMVADD 480
+ + L I ++ A L V YR + IGS L+ A+
Sbjct: 57 GFALLLVLLEILAGGLGIAAELREAELDARLYVLPEYRGKGIGSALLEAALEWARKRGIS 116
Query: 481 ADEVVLETE-----ITNRPALKLYENLGFVRDKRLF 511
+ + LE N A++ YE LGF +R
Sbjct: 117 LNRLALEVYEKNGFGGNGAAVRFYEKLGFKEARREV 152
>gnl|CDD|222196 pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 152
Score = 45.0 bits (107), Expect = 1e-05
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 452 MLAVDENYRKRKIGSNLVLKAIRAMVADD--ADEVVLETEITNRPALKLYENLGFVRDKR 509
+L + +R + L+++ + D VV E ++ N+ + L E GF +
Sbjct: 83 LLVGEPRFRGKGFTR-AWLRSLIHYLFLDPRTQRVVGEPDVDNKRMIALLERAGFRKVGE 141
>gnl|CDD|222199 pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 127
Score = 42.9 bits (102), Expect = 4e-05
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 418 PKFCFLAMDEQKCVGAIVC---KLDIHRKVIRRGYIAMLAVDENYRKRKIGSNLVLKAIR 474
A D+ K VG + +L++ K G I +A YR R + L+ +A+
Sbjct: 40 EGRVLGAFDDGKLVGQLALYPFRLNVPGKTYPAGGITGVATYPEYRGRGLMRKLLRRALA 99
Query: 475 AMVADDADEVVL 486
M L
Sbjct: 100 EMRERGQPLSYL 111
>gnl|CDD|117022 pfam08445, FR47, FR47-like protein. The members of this family are
similar to the C-terminal region of the D. melanogaster
hypothetical protein FR47. This protein has been found
to consist of two N-acyltransferase-like domains swapped
with the C-terminal strands.
Length = 86
Score = 41.9 bits (99), Expect = 4e-05
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 448 GYIAMLAVDENYRKRKIGSNLVLKAIRAMVADDADEVVLETEITNRPALKLYENLGF-VR 506
G + L +R+R +GS LV A+ +A+ N P+ +LYE LGF
Sbjct: 22 GELGALQTLPEHRRRGLGSRLV-AALARGIAERGITPFAVVVAGNTPSRRLYEKLGFRKI 80
Query: 507 DKRLF 511
D+ +
Sbjct: 81 DETYW 85
>gnl|CDD|235142 PRK03624, PRK03624, putative acetyltransferase; Provisional.
Length = 140
Score = 40.7 bits (96), Expect = 3e-04
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 422 FLAMDEQKCVGAIVCKLDIHRKVIRRGYIAMLAVDENYRKRKIGSNLVLKAIRAMVADDA 481
+A + VG ++ D HR G+ LAV ++R R IG LV + + ++A
Sbjct: 48 LVAEVGGEVVGTVMGGYDGHR-----GWAYYLAVHPDFRGRGIGRALVARLEKKLIARGC 102
Query: 482 DEVVLETEITNRPALKLYENLGFVRD------KRL 510
++ L+ N L YE LG+ KRL
Sbjct: 103 PKINLQVREDNDAVLGFYEALGYEEQDRISLGKRL 137
>gnl|CDD|224584 COG1670, RimL, Acetyltransferases, including N-acetylases of
ribosomal proteins [Translation, ribosomal structure and
biogenesis].
Length = 187
Score = 41.5 bits (97), Expect = 3e-04
Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 16/119 (13%)
Query: 402 SEPYSIYTYRYFIHNWPKFCF----LAMDEQKCVGAIVCKL-DIHRKVIRRGYIAMLAVD 456
S+ + + F A + + +G V L DI R +D
Sbjct: 47 SDEELLRLLAEAWEDLGGGAFAIELKATGDGELIG--VIGLSDIDRAANGDLAEIGYWLD 104
Query: 457 ENYRKRKIGSNLVLKAIRAMVA-----DDADEVVLETEITNRPALKLYENLGFVRDKRL 510
Y + + +A+RA++ + + N ++++YE LGF + L
Sbjct: 105 PEYWGKGYAT----EALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRLEGEL 159
>gnl|CDD|222309 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 118
Score = 38.5 bits (90), Expect = 0.001
Identities = 24/87 (27%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 418 PKFCFLAMDEQKCVGAIVCKLDIHRKVIRRGYIAMLAVDENYRKRKIGSNLVLKAIRAMV 477
+ G IV + G + +L V YR R IG L L AI A
Sbjct: 43 GSITGFVAERG---GEIVGFAGLDPD----GRLDLLYVRPRYRGRGIGRAL-LDAIEAEA 94
Query: 478 ADDADEVVLETEITNRPALKLYENLGF 504
L TE + A Y LGF
Sbjct: 95 RKGIK--RLTTE-ASLLARPFYLRLGF 118
>gnl|CDD|182877 PRK10975, PRK10975, TDP-fucosamine acetyltransferase; Provisional.
Length = 194
Score = 39.1 bits (92), Expect = 0.002
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 421 CFLAMDEQKCVGAIVCKLDIHRKVIRRGYIAMLAVDENYRKRKIGSNLVLKAIRAMVADD 480
C L D G I + + I +LAV + R IG+ L+ A+ A
Sbjct: 103 CLLLRDAS---GQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARG 159
Query: 481 ADEVVLETEITNRPALKLYENLGFV 505
+ + T++ N AL+LY G
Sbjct: 160 LTRLRVATQMGNLAALRLYIRSGAN 184
>gnl|CDD|181904 PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase;
Provisional.
Length = 146
Score = 38.0 bits (89), Expect = 0.003
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 453 LAVDENYRKRKIGSNLVLKAIRAMVADDADEVVLETEITNRPALKLYENLGF 504
+AVD +Y+++ +G L+ I + + LE +N A+ LYE+LGF
Sbjct: 69 IAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGF 120
>gnl|CDD|225695 COG3153, COG3153, Predicted acetyltransferase [General function
prediction only].
Length = 171
Score = 37.3 bits (87), Expect = 0.007
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 422 FLAMDEQKCVGAIVCKLDIHRKVIRRGY----IAMLAVDENYRKRKIGSNLVLKAIRAMV 477
+A D+ + VG I L V +A LAVD Y+ + IGS LV + + A+
Sbjct: 49 LVAEDDGEVVGHI---LFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALR 105
Query: 478 ADDADEVVLETEITNRPALKLYENLGFVRDKRL 510
A VV+ + T Y GF
Sbjct: 106 LAGASAVVVLGDPT------YYSRFGFEPAAGA 132
>gnl|CDD|178308 PLN02706, PLN02706, glucosamine 6-phosphate N-acetyltransferase.
Length = 150
Score = 35.8 bits (83), Expect = 0.016
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 427 EQKCVGAIVC--KLDIHRKVIRR----GYIAMLAVDENYRKRKIGSNLVLKAIRAMV--A 478
E G I+ + + RK IR G+I + VD R + +G K I A+ A
Sbjct: 59 EDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLG----KKIIEALTEHA 114
Query: 479 DDAD--EVVLETEITNRPALKLYENLGFVR 506
A +V+L+ N+ YE G+VR
Sbjct: 115 RSAGCYKVILDCSEENKA---FYEKCGYVR 141
>gnl|CDD|236088 PRK07757, PRK07757, acetyltransferase; Provisional.
Length = 152
Score = 35.6 bits (83), Expect = 0.020
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 422 FLAMDEQKCVGAIVCKLDIHRKVIRRGYIAMLAVDENYRKRKIGSNLVLKAIR 474
++A +E + VG C L I + I LAV E+YR + IG LV +
Sbjct: 44 YVAEEEGEIVG--CCALHILWE--DLAEIRSLAVSEDYRGQGIGRMLVEACLE 92
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 33.4 bits (76), Expect = 0.30
Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 5/144 (3%)
Query: 145 VNNSQLTNNSSSYSCKNCDNGHILHDSSHFNTSQPKSLAPINNGPKKSLTKLKSLSSSQG 204
++ LT+ +N H L SS+ T + L G + S
Sbjct: 219 ASSKGLTSTKELVPVQNSGGNHSLSKSSNSQTPE---LEYSEKGKDHHHSHNHQHHSIGI 275
Query: 205 NNDVHHKHEKKHSSESINGSTVNKKKINPE--TKASKEANNYSSKTCVKNKLSNVNNNNT 262
NN + K + + + NK + + + + +N SS + +
Sbjct: 276 NNHHSKHADSKLQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKH 335
Query: 263 DFCSSQETQPNQNTVQSTLVLNQT 286
+ + P ++ + V + +
Sbjct: 336 SNRNKSNSSPKSHSSANGSVPSSS 359
Score = 33.0 bits (75), Expect = 0.48
Identities = 39/242 (16%), Positives = 86/242 (35%), Gaps = 34/242 (14%)
Query: 2 IGGIKYVSYKSELQMPDIIKLIQKDLSEPYSIYTYRYFIHNWPKFCFLMDQLKTINIIEN 61
G YVSY+ L+ + +QK+ + + + PK ++ T+++ +
Sbjct: 168 FGFKSYVSYRFRLRKQ---REVQKE-----NEFYMQLLQQALPK-----EENHTLSVTDK 214
Query: 62 DTATQSIRSALNNTTLVPSNLN----SESKDVEDSNCNITVICHSYDNTQSQDILYNGVT 117
+ + S + + LVP + S SK + D+ S + ++ +
Sbjct: 215 EKSEASSKGLTSTKELVPVQNSGGNHSLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIG 274
Query: 118 NSNHNDLG-SNKLSE-----RYESTECLEPDECVNNSQLTNNSSSYSCKNCDNGHILHDS 171
+NH+ +KL + + + + T+NSSS + + S
Sbjct: 275 INNHHSKHADSKLQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIG-------S 327
Query: 172 SHFNTSQPKSLAPINNGPKKSLTKLKSLSSSQGNNDVHHKHEKKHSSESINGSTVNKKKI 231
+++ + N+ PK S + S ++ V K+ + + + KK
Sbjct: 328 KSSKSAKHSNRNKSNSSPK----SHSSANGSVPSSSVSDNESKQKRASKSSSGARDSKKD 383
Query: 232 NP 233
Sbjct: 384 AS 385
Score = 31.4 bits (71), Expect = 1.4
Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 2/148 (1%)
Query: 171 SSHFNTSQPKSLAPINNGPKKSLTKLKSLSSSQGNNDVHHKHEKKHSSESINGSTVNKKK 230
SS TS + + N+G SL+K + + + K + + +N
Sbjct: 220 SSKGLTSTKELVPVQNSGGNHSLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIGINNHH 279
Query: 231 INPETKASKEANNYSSKTCVKNKLSNVNNNNTDFCSSQETQPNQNTVQSTLVLNQTNEEV 290
+ + + S+ N + + S+ + + + + +
Sbjct: 280 SKHADSKLQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNRN 339
Query: 291 SGNIHSTPELCSTDDVSKVESSALDDTS 318
N S+P+ S+ + S SS D+ S
Sbjct: 340 KSN--SSPKSHSSANGSVPSSSVSDNES 365
>gnl|CDD|180411 PRK06123, PRK06123, short chain dehydrogenase; Provisional.
Length = 248
Score = 32.8 bits (75), Expect = 0.36
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 16/60 (26%)
Query: 431 VGAIVCKLDIHRKVIRRGYIAMLAVDENYRKRKIGSNLVLKAIR-------AMVADDADE 483
+GA L RGY AV NY + + + V++AIR A+ AD ADE
Sbjct: 14 IGAATALL-----AAERGY----AVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADE 64
>gnl|CDD|222034 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 136
Score = 31.1 bits (71), Expect = 0.49
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 21/108 (19%)
Query: 409 TYRYF--IHNWPK--FCFLA--MDEQKCVGAIVCKLDIHRKVIRRGYIAMLAVDENYRKR 462
+ +W F A + +G L I GY + Y +
Sbjct: 39 AEAWIARALHWALRGFGLWAIEDKDTGFIG--TIGLHIPDDEAEIGY----WLGPEYWGK 92
Query: 463 KIGSNLVLKAIRAMVA-----DDADEVVLETEITNRPALKLYENLGFV 505
+ +A RA++ D +V + N + ++ E LGF
Sbjct: 93 GYAT----EAARALLDYAFEELGLDRIVARIDPENIASQRVLEKLGFK 136
>gnl|CDD|234577 PRK00021, truA, tRNA pseudouridine synthase A; Validated.
Length = 244
Score = 32.0 bits (74), Expect = 0.58
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 262 TDFCSSQETQPNQNTVQSTL 281
T+F Q QPN TVQ L
Sbjct: 13 TNFHGWQ-RQPNGRTVQGEL 31
>gnl|CDD|211337 cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial
pseudouridine synthases similar to E. coli TruA. This
group consists of eukaryotic and bacterial pseudouridine
synthases similar to E. coli TruA, Pseudomonas
aeruginosa truA and human pseudouridine synthase-like 1
(PUSL1). Pseudouridine synthases catalyze the
isomerization of specific uridines in an RNA molecule to
pseudouridines (5-ribosyluracil, psi). No cofactors are
required. E. coli TruA makes psi38/39 and/or 40 in tRNA.
psi38 and psi39 in tRNAs are highly phylogenetically
conserved. P. aeruginosa truA is required for induction
of type III secretory genes and may act through
modifying tRNAs critical for the expression of type III
genes or their regulators.
Length = 239
Score = 32.1 bits (74), Expect = 0.59
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 262 TDFCSSQETQPNQNTVQSTL--VLNQ-TNEEVS 291
T+F Q QPN TVQ L L++ E V
Sbjct: 8 TNFSGWQ-RQPNGRTVQGELEKALSKIAGEPVR 39
>gnl|CDD|182099 PRK09831, PRK09831, putative acyltransferase; Provisional.
Length = 147
Score = 31.1 bits (70), Expect = 0.62
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 449 YIAMLAVDENYRKRKIGSNLVLKAIRAMVADDADEVVLETEITNRPALKLYENLGF--VR 506
YI ML VD Y +R + S L ++ ++ ++ E+ ++ IT +P +E GF V+
Sbjct: 74 YIDMLFVDPEYTRRGVASAL----LKPLIKSES-ELTVDASITAKP---FFERYGFQTVK 125
Query: 507 DKRL 510
+R+
Sbjct: 126 QQRV 129
>gnl|CDD|224167 COG1246, ArgA, N-acetylglutamate synthase and related
acetyltransferases [Amino acid transport and
metabolism].
Length = 153
Score = 30.7 bits (70), Expect = 0.92
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 448 GYIAMLAVDENYRKRKIGSNLVLKAIRAMVADDADEVVLET--EITNRPALKLYENLGFV 505
G + LAV +YR G L+ + + DA E+ ++ +T R + + + GF
Sbjct: 66 GELRSLAVHPDYRGSGRGERLLERLL-----ADARELGIKELFVLTTR-SPEFFAERGFT 119
Query: 506 R 506
R
Sbjct: 120 R 120
>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal
growth factor (EGF) presents in a large number of
proteins, mostly animal; the list of proteins currently
known to contain one or more copies of an EGF-like
pattern is large and varied; the functional significance
of EGF-like domains in what appear to be unrelated
proteins is not yet clear; a common feature is that
these repeats are found in the extracellular domain of
membrane-bound proteins or in proteins known to be
secreted (exception: prostaglandin G/H synthase); the
domain includes six cysteine residues which have been
shown to be involved in disulfide bonds; the main
structure is a two-stranded beta-sheet followed by a
loop to a C-terminal short two-stranded sheet;
Subdomains between the conserved cysteines vary in
length; the region between the 5th and 6th cysteine
contains two conserved glycines of which at least one
is present in most EGF-like domains; a subset of
these bind calcium.
Length = 36
Score = 28.2 bits (63), Expect = 1.0
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 137 ECLEPDECVNNSQLTNNSSSYSCKNCDNGHILHDS 171
EC + C N N SY C C G+ S
Sbjct: 1 ECAASNPCSNGGTCVNTPGSYRCV-CPPGYTGDRS 34
>gnl|CDD|148505 pfam06923, GutM, Glucitol operon activator protein (GutM). This
family consists of several glucitol operon activator
(GutM) proteins. Expression of the glucitol (gut) operon
in Escherichia coli is regulated by an unusual, complex
system which consists of an activator (encoded by the
gutM gene) and a repressor (encoded by the gutR gene) in
addition to the cAMP-CRP complex (CRP, cAMP receptor
protein). Synthesis of the mRNA, which initiates at the
promoter specific to the gutR gene, occurs within the
gutM gene. Expressional control of the gut operon
appears to occur as a consequence of the antagonistic
action of the products of the autogenously regulated
gutM and gutR genes.
Length = 109
Score = 29.1 bits (66), Expect = 1.9
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 441 HRKVIRRGYIAMLAVDENYR 460
++ R G I +LA+D++ R
Sbjct: 44 NKGRFRPGTIVLLAIDDDGR 63
>gnl|CDD|182263 PRK10140, PRK10140, putative acetyltransferase YhhY; Provisional.
Length = 162
Score = 29.2 bits (65), Expect = 2.9
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 446 RRGYIA--MLAVDENYRKRKIGSNLVLKAIRAMV--ADD---ADEVVLETEITNRPALKL 498
RR ++A + VD ++ R + S L +R M+ D+ D + L + N PA+K+
Sbjct: 75 RRSHVADFGICVDSRWKNRGVASAL----MREMIEMCDNWLRVDRIELTVFVDNAPAIKV 130
Query: 499 YENLGF 504
Y+ GF
Sbjct: 131 YKKYGF 136
>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a
large number of membrane-bound and extracellular (mostly
animal) proteins. Many of these proteins require calcium
for their biological function and calcium-binding sites
have been found to be located at the N-terminus of
particular EGF-like domains; calcium-binding may be
crucial for numerous protein-protein interactions. Six
conserved core cysteines form three disulfide bridges as
in non calcium-binding EGF domains, whose structures are
very similar. EGF_CA can be found in tandem repeat
arrangements.
Length = 38
Score = 26.4 bits (59), Expect = 3.3
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 137 ECLEPDECVNNSQLTNNSSSYSCKNCDNGHILH 169
EC + C N N SY C C G+
Sbjct: 4 ECASGNPCQNGGTCVNTVGSYRCS-CPPGYTGR 35
>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain.
Length = 39
Score = 26.4 bits (59), Expect = 4.1
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 137 ECLEPDECVNNSQLTNNSSSYSCKNCDNGH 166
EC + C N N SY C+ C G+
Sbjct: 4 ECASGNPCQNGGTCVNTVGSYRCE-CPPGY 32
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 29.8 bits (67), Expect = 4.1
Identities = 32/206 (15%), Positives = 62/206 (30%), Gaps = 18/206 (8%)
Query: 75 TTLVPSNLNSESKDVEDSNCNITVICHSYDNTQSQDILYNGVTNSNHNDLGSNKLSERYE 134
S + S D + SN + T S +T ++N+ N ++
Sbjct: 29 DPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDK--------ADNNNTSNQDNN--DKKF 78
Query: 135 STECLEPDECVNNSQLTNNSSSYSCKNCDNGHILHDSSHFNTSQPKSLAPINNGPKKSLT 194
ST + N + + N + + N S + + N
Sbjct: 79 STIDSSTSDSNNIIDFIYKNLPQTN---INQLLTKNKYDDNYSLTTLIQNLFNLNSDISD 135
Query: 195 KLKSLSSSQGNNDVHHKHEKKHSSESINGSTVNKKKINPETKASKEANNYSSKTCVKNKL 254
+ +S + ND K+S SI T + + K ++ ++K NK
Sbjct: 136 YEQPRNSEKSTND-----SNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQ 190
Query: 255 SNVNNNNTDFCSSQETQPNQNTVQST 280
N S+ + + Q +
Sbjct: 191 PNSPKPTQPNQSNSQPASDDTANQKS 216
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 29.5 bits (66), Expect = 6.1
Identities = 22/187 (11%), Positives = 51/187 (27%), Gaps = 28/187 (14%)
Query: 117 TNSNHNDLGSNKLSERY---ESTECLEPDECVNNSQLTNNSSSYSCKNCDNGHILHDSSH 173
N+ + + E + ++ + + +L + S +N + I++ S
Sbjct: 1 PNALGLNERNRAYEEIFGAPRKSDAFVSKQLLPPRRLQRKLNPISIRNGADNDIINSESK 60
Query: 174 FNTSQPKSLAPINN---GPKKSLTKLKSLSSSQGNNDVHHKHEKKH--SSESING---ST 225
S + + H S S +G S
Sbjct: 61 -----ESFGKYALGHQIFSSFSSSPKLFQRRNSAGPITHSPSATSSTSSLNSNDGDQFSP 115
Query: 226 VNKK-KINPETKASKEANNYSSKTCVKNK-----------LSNVNNNNTDFCSSQETQPN 273
+ NP + S++ + + V+ + ++ TD S PN
Sbjct: 116 ASDSLSFNPSSTQSRKDSGPGDGSPVQKRKNPLLPSSSTHGTHPPIVFTDNNGSHAGAPN 175
Query: 274 QNTVQST 280
+ +
Sbjct: 176 ARSRKEI 182
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 29.0 bits (64), Expect = 6.7
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 201 SSQGNNDVHHKHEKKHSSESINGSTVNKKKINPETKASKEANNYSSKTCVKNKLSNVN-- 258
++ N K E ++ + K P + AN ++ T +N +
Sbjct: 274 NTNTNTATTEKKETTTQQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTSTP 333
Query: 259 --NNNTDFCSSQETQPNQNTVQST 280
N NT+ S+ T N N Q +
Sbjct: 334 SKNTNTNTNSNTNTNSNTNANQGS 357
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 28.8 bits (64), Expect = 9.3
Identities = 35/196 (17%), Positives = 71/196 (36%), Gaps = 12/196 (6%)
Query: 177 SQPKSLAPINNGP---KKSLTKLKSLSSSQGNNDVHHKHEKKHSSESINGSTVNKKKINP 233
+Q KSL ++ KK+ LKS + D + E + K+ ++
Sbjct: 549 NQEKSLQDVSVEASEIKKNFLGLKSSEKEINSPDEVKGAVCISTLEELETLKSEKENLDG 608
Query: 234 ETKASKEANNYSSKTCVKNKLSNVNNNNTDFCSSQETQPNQNT-----VQSTLVLNQTNE 288
E + + + SK ++ + ++ +SQE+ T V+S L +
Sbjct: 609 EL-SKCKDDLEESKNKLQETEKKLEELKSELDASQESNSLAETQLKCMVESYESLELRAK 667
Query: 289 EVSGNIHSTP-ELCSTDDVSKVESSALDDTSLKVENLE--IQSGEESCTDLCSPSQQVEP 345
++ S ++ S +D + E + K LE I+ E+ ++ +
Sbjct: 668 DLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQKLDEEEQKI 727
Query: 346 LTSNDIEKSKTKHFEC 361
+I + K EC
Sbjct: 728 KQEKEIAAAAEKLAEC 743
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.128 0.369
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,517,328
Number of extensions: 2121283
Number of successful extensions: 1289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1269
Number of HSP's successfully gapped: 67
Length of query: 511
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 410
Effective length of database: 6,457,848
Effective search space: 2647717680
Effective search space used: 2647717680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.2 bits)