BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3407
(749 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 129/223 (57%), Gaps = 5/223 (2%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSP-R 59
M+Y RGN DY+DW GNPGW + +LP+F KSED D+ +H GG L V
Sbjct: 156 MMYVRGNREDYDDWAADGNPGWAYNDVLPFFKKSEDNLDLDEVGTEYHAKGGLLPVGKFP 215
Query: 60 LSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRE 119
+P + I++ AG+EL +++D+N GF T R G+R S+++AFL PA+ R
Sbjct: 216 YNPPLSYAILK-AGEELGF-SVHDLNGQNSTGFMIAQMTARNGIRYSSARAFLRPARMRN 273
Query: 120 NLIILKNTEVIKILIDSKLK-AYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSG 178
NL IL NT KILI K GVE + G + +EV+LSAGAV SP +L+LSG
Sbjct: 274 NLHILLNTTATKILIHPHTKNVLGVEVSDQFGSTRKILVKKEVVLSAGAVNSPHILLLSG 333
Query: 179 IGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPA 220
+G + L++ N+ + +LP VG+NL +HV + F + D A
Sbjct: 334 VGPKDELQQVNVRTVHNLPGVGKNLHNHVTYFTNFFIDDADTA 376
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 153 bits (386), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 5/223 (2%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSP-R 59
M+Y RGN DY+DW GNPGW ++ +LP+F KSED ++ +H GG L V
Sbjct: 156 MMYIRGNREDYDDWAAQGNPGWSYQDVLPFFKKSEDNLELDAVGTEYHAKGGLLPVGKFP 215
Query: 60 LSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRE 119
+P + +++ AG+E+ ++ D+N GF T R G+R S+++AFL PA+ R
Sbjct: 216 YNPPLSYALLK-AGEEMGF-SVQDLNGQNSTGFMIAQMTARNGIRYSSARAFLRPARMRN 273
Query: 120 NLIILKNTEVIKILIDSKLK-AYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSG 178
NL IL NT V K+LI K GVE + G + + +EVI+S GAV SPQ+L+LSG
Sbjct: 274 NLHILLNTTVTKVLIHPGTKNVVGVEVSDQFGSMRKILVKKEVIVSGGAVNSPQILLLSG 333
Query: 179 IGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPA 220
+G ++ L++ N+ + LP VG+NL +HV + F + D A
Sbjct: 334 VGPKEDLQKVNVRPVHHLPGVGKNLHNHVAYFTNFFIDDADTA 376
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 119/205 (58%), Gaps = 6/205 (2%)
Query: 2 LYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRLS 61
++ RG+ D++ W G GW F+ + YF++SE S +H T G L VS
Sbjct: 94 VFTRGHPSDFDRWAAEGADGWSFRDVQKYFIRSEGNAVFS---GTWHGTNGPLGVSNLAE 150
Query: 62 PDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENL 121
P+ T + + +E+ + D N G G + T R RCST+ +L PA R+NL
Sbjct: 151 PNPTSRAFVQSCQEMGLPYNPDFNGASQEGAGIYQMTIRNNRRCSTAVGYLRPALGRKNL 210
Query: 122 IILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIGI 181
++ V+KI+ + +A GV+YI + G + +++E++++AGA+G+P+L+MLSG+G
Sbjct: 211 TVVTRALVLKIVFNGT-RATGVQYI-ANGTLNTAEASQEIVVTAGAIGTPKLMMLSGVGP 268
Query: 182 QKHLKEKNITVIKDLP-VGENLQDH 205
HL+E I V++DLP VGENLQDH
Sbjct: 269 AAHLRENGIPVVQDLPGVGENLQDH 293
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 135/271 (49%), Gaps = 12/271 (4%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRL 60
M+Y RG++ DY WE+AG WG+K F K E Q + + +H T G L VS
Sbjct: 91 MVYIRGHEEDYQAWEQAGGEYWGWKRAFALFKKLEHNQRFDKSN--YHGTDGELAVSDLK 148
Query: 61 SPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFREN 120
+ K AG E KI D N G G + T ++G R S+++AFL R N
Sbjct: 149 DLNPLSKSFVQAGMEAKISFNGDFNGAHQEGVGFYQVTQKHGQRWSSARAFLHDVIDRPN 208
Query: 121 LIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179
L I+ K+L + + KA GV YI + + + EVILS GAV +PQLLMLSG+
Sbjct: 209 LDIITEAHATKVLFEDR-KAVGVSYIQKNMHQQVKTTDSGEVILSLGAVNTPQLLMLSGV 267
Query: 180 GIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDP-AITLHYLRYLKVAAL--- 234
G LKE I ++ DLP VG+NLQDH+ + ++++ P + ++ V
Sbjct: 268 GAAAELKEHGIALVHDLPEVGKNLQDHLDITLMCAANSRTPIGVAFSFIPRGLVGLFSYI 327
Query: 235 ---KGISTVEVAKVVGFINTKRNSLYPNVEL 262
KG T VA+ GF+ + PN++
Sbjct: 328 FKRKGFLTSNVAESGGFVKSSPERDRPNLQF 358
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 147/289 (50%), Gaps = 27/289 (9%)
Query: 1 MLYQRGNDRDYNDWER-AGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RGN DY++W + G W + LPYF ++E +DI D +H G ++V+ P
Sbjct: 98 MCYLRGNALDYDNWAKIPGLEDWNYLQCLPYFKRAET-RDIGPND--YHGGDGPVSVATP 154
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAKF 117
+ +E AG E D+N Q GFGP D TTT G R ST++ +L+ AK
Sbjct: 155 KEGNNELYGAFIRAGIEAGYPATEDVNGYQQEGFGPMDRTTTPNGRRASTARGYLDIAKQ 214
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLS 177
R NL I + I + K +A GV Y +G+ V + REV+L AGA+ SPQ+L S
Sbjct: 215 RPNLTIETHATTDVIEFEGK-RAVGVSY-ERKGQAQRVRARREVLLCAGAIASPQILQRS 272
Query: 178 GIGIQKHLKEKNITVIKDLP-VGENLQDHVCF--------PGVLFSSNK---DPAITLHY 225
G+G +HL+E +I V+ +LP VGENLQDH+ P L+ + K P I +
Sbjct: 273 GVGNPEHLEEFDIPVVHELPGVGENLQDHLEMYIQYECKKPISLYPALKWYNQPKIGAEW 332
Query: 226 LRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVE--LLSIRIPMNSK 272
L + KGI + GFI T +PN++ L I I N K
Sbjct: 333 LFF-----GKGIGASNQFEAAGFIRTNDQEEWPNLQYHFLPIAISYNGK 376
>sp|Q6D6D9|BETA_ERWCT Choline dehydrogenase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1
Length = 559
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 146/282 (51%), Gaps = 19/282 (6%)
Query: 1 MLYQRGNDRDYNDWER-AGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RGN D++ W +G W + LPYF K+E +D+ D +H G ++V+ P
Sbjct: 94 MCYIRGNAMDFDHWATMSGLEDWSYLDCLPYFRKAET-RDVGAND--YHGASGPVSVTTP 150
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAKF 117
++ +E + AG + D+N Q GFGP D T T G R ST++ +L+ AK
Sbjct: 151 KMGNNELFHAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKS 210
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLS 177
R+NL I+ + +IL D K +A GV Y + + REV+L AGA+ SPQ+L S
Sbjct: 211 RKNLTIVTHALTDRILFDGK-RAVGVAYFKGESAQT-AKARREVLLCAGAIASPQILQRS 268
Query: 178 GIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAI---TLHYLRYLKVAA 233
G+G + L+ +I+V+ DLP VGENLQDH+ L + K+P L + K+ A
Sbjct: 269 GVGPKDLLQRLDISVVHDLPGVGENLQDHLEM--YLQYACKEPVSLYPALQWFNQPKIGA 326
Query: 234 L-----KGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
GI + GFI ++ +PN++ + + +N
Sbjct: 327 EWLFNGTGIGASNQFEAGGFIRSRDEFTWPNIQYHFLPVAIN 368
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 148/284 (52%), Gaps = 23/284 (8%)
Query: 1 MLYQRGNDRDYNDWERAGNPG---WGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS 57
M Y RGN D+++W A PG W + LPYF K+E +D+ D +H G ++V+
Sbjct: 94 MCYIRGNAMDFDNW--ATMPGLEDWSYLDCLPYFRKAET-RDVGSND--YHGATGPVSVA 148
Query: 58 -PRLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPA 115
P++ +E + AG + D+N Q GFGP D T T G R ST++ +L+ A
Sbjct: 149 TPKMGNNELFHAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQA 208
Query: 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175
K R+NL I+ + KIL + K +A GV Y + V + REV+L AGA+ SPQ+L
Sbjct: 209 KGRKNLTIVTHALTDKILFEGK-RAVGVAYFKGESPQT-VQARREVLLCAGAIASPQILQ 266
Query: 176 LSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPA---ITLHYLRYLKV 231
SG+G + L+ +I V+ DLP VGENLQDH+ L + K+P L + K+
Sbjct: 267 RSGVGPKDLLQGLDIPVVHDLPGVGENLQDHLEM--YLQYACKEPVSLYPALQWFNQPKI 324
Query: 232 AAL-----KGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
A GI + GFI ++ +PN++ + + +N
Sbjct: 325 GAEWLFSGTGIGASNQFEAGGFIRSRDEFAWPNIQYHFLPVAIN 368
>sp|A8GBX9|BETA_SERP5 Choline dehydrogenase OS=Serratia proteamaculans (strain 568)
GN=betA PE=3 SV=1
Length = 555
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 146/285 (51%), Gaps = 23/285 (8%)
Query: 1 MLYQRGNDRDYNDWERAGNPG---WGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS 57
M Y RGN D+++W +A PG W + LPYF K+E +DI D FH G ++V+
Sbjct: 94 MCYIRGNAMDFDNWAKA--PGLEDWSYLDCLPYFRKAET-RDIGPND--FHGGDGPVSVT 148
Query: 58 -PRLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPA 115
P+ +E + AG + D+N Q GFGP D T T G R ST++ +L+ A
Sbjct: 149 TPKAGNNELFHAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQA 208
Query: 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGK-ICHVNSTREVILSAGAVGSPQLL 174
+ R NL I+ + +I D K +A GV+Y+ + K + + REV+L AGA+ SPQ+L
Sbjct: 209 RSRPNLKIVTHALTDRIRFDGK-RAVGVDYLQGEAKDVTSARARREVLLCAGAIASPQIL 267
Query: 175 MLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPA---ITLHYLRYLK 230
SG+G L +I ++ +LP VGENLQDH+ L + K P L + K
Sbjct: 268 QRSGVGPAALLNRLDIDLVHELPGVGENLQDHLEM--YLQYACKKPVSLYPALQWFNQPK 325
Query: 231 VAAL-----KGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
+ A GI + GFI ++ +PN++ + + +N
Sbjct: 326 IGAEWLFNGSGIGASNQFEAGGFIRSREEFAWPNIQYHFLPVAIN 370
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 133 bits (335), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 134/275 (48%), Gaps = 24/275 (8%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRL 60
M+Y RG+ DYN W R G GW + H LPYF K++ + + + G L VS
Sbjct: 142 MVYIRGHAEDYNRWHRQGAEGWDYAHCLPYFRKAQKHELGANM---YRGGDGPLHVSRGK 198
Query: 61 SPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFREN 120
+ + A ++ D+N Q GFG D T G R ST+ A+L PA R N
Sbjct: 199 TNHPLHQAFLQAARQAGYPFTEDMNGFQQEGFGWMDMTIHQGKRWSTASAYLRPALSRPN 258
Query: 121 LIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIG 180
L T V ++L + +A GVEYI G+ +REVILS GA+ SPQLLMLSG+G
Sbjct: 259 LRAEVQTLVSRVLFEGT-RAVGVEYIKD-GQSHKAYVSREVILSGGAINSPQLLMLSGVG 316
Query: 181 IQKHLKEKNITVIKDLP-VGENLQDHV-------CFPGVLFSSNKDP----AITLHYL-R 227
LK+ I V+ LP VG+NLQDH+ C + S + P I L +L R
Sbjct: 317 NADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQHACTQPITLHSAQKPLRKVCIGLEWLWR 376
Query: 228 YLKVAALKGISTVEVAKVVGFINTKRNSLYPNVEL 262
+ A + T GFI ++ +P+++
Sbjct: 377 FTGDGATAHLET------GGFIRSRPGVPHPDIQF 405
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 145/286 (50%), Gaps = 25/286 (8%)
Query: 1 MLYQRGNDRDYNDWERA-GNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RGN D+++W +A G W + LPYF K+E +DI D +H G ++V+ P
Sbjct: 96 MCYIRGNALDFDNWAKAKGLEDWTYHDCLPYFRKAES-RDIGPND--YHGGDGPVSVTTP 152
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAKF 117
+ + + AG + D+N Q GFGP D T T G R ST++ +L+ A+
Sbjct: 153 KAGNNPLFHAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDQARE 212
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEY-INSQGKICHVNSTREVILSAGAVGSPQLLML 176
R NL I+ + +IL D K +A GV Y I + + REV+L AGA+ SPQ+L
Sbjct: 213 RPNLTIVTHATTDRILFDGK-RASGVSYLIGNANDATEARARREVLLCAGAIASPQILQR 271
Query: 177 SGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------CF-PGVLFSSNK---DPAITLH 224
SG+G L+E +I ++ +LP VG+NLQDH+ C P L+ + K P I
Sbjct: 272 SGVGPAALLRELDIALVHELPGVGQNLQDHLEMYLQYACTQPVSLYPALKLLNQPGIGAQ 331
Query: 225 YLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
+L GI + GFI T+ +PN++ + + +N
Sbjct: 332 WL-----FTGNGIGASNQFEAGGFIRTRPEFAWPNIQFHFLPVAIN 372
>sp|B2JS89|BETA_BURP8 Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=betA PE=3 SV=1
Length = 572
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 150/288 (52%), Gaps = 31/288 (10%)
Query: 1 MLYQRGNDRDYNDW-ERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGG--YLTVS 57
M Y RGN DY+ W ER G W + LPYF K+E +D D +H G ++T S
Sbjct: 97 MCYIRGNALDYDGWAERKGLENWTYLDCLPYFRKAET-RDAGAND--YHGGDGPVHVTTS 153
Query: 58 PRLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAK 116
R + + + AG + D+N Q GFGP D T T G R ST++ +L+ A+
Sbjct: 154 KR-GVNPLFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTANGRRASTARGYLDQAR 212
Query: 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLML 176
R NL I+ +IL K +A GV Y++ Q +I ++ REV+L +GA+ SPQ+L
Sbjct: 213 PRPNLTIVTYATTDRILFSGK-RAQGVVYLDGQAQIT-AHARREVLLCSGAIASPQILQR 270
Query: 177 SGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------C------FPGVLFSSNKDPAIT 222
SG+G L++ +I V+ DLP VG+NLQDH+ C +P +L + PAI
Sbjct: 271 SGVGPGGWLRDLDIPVVLDLPGVGQNLQDHLEMYMQYECKEPVSLYPALLLRNQ--PAIG 328
Query: 223 LHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
+ ++ LK + + E GFI T+ + +PN++ + + +N
Sbjct: 329 IEWM--LKGTGIGASNHFEAG---GFIRTRDDDPWPNIQYHFLPVAIN 371
>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1
Length = 568
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 136/274 (49%), Gaps = 22/274 (8%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSP-- 58
M+Y RG+ DY++W G GW ++ LPYF ++E + I +D G T +
Sbjct: 94 MVYVRGHACDYDEWVEQGAEGWSYQECLPYFRRAESW--IHGEDTYRGGDGPVGTCNGND 151
Query: 59 -RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKF 117
L+P + AG++ D N Q GFGP T G+R STS A+L A
Sbjct: 152 MELNP--LYQAFIDAGQQAGYPKTDDYNGYQQEGFGPMHMTVDKGIRASTSNAYLRRAMK 209
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLS 177
R NL + K K+LI +K +A GVE I GK+ V + EV+LSAG+VGSPQLL LS
Sbjct: 210 RSNLTVRKGVVTRKVLIKNK-QAIGVE-IEVGGKVQSVYANTEVLLSAGSVGSPQLLQLS 267
Query: 178 GIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAITLHYLRYLKVAAL-- 234
GIG + L++ I V DLP VGENLQDH+ V F ITL+ L L
Sbjct: 268 GIGPKAVLEQAGIAVKHDLPGVGENLQDHL---EVYFQYACHQPITLNSKLGLISKGLIG 324
Query: 235 -------KGISTVEVAKVVGFINTKRNSLYPNVE 261
G+ + FI ++ +PN++
Sbjct: 325 TRWILQKDGLGATNHFESCAFIRSRAGLKWPNIQ 358
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 117/207 (56%), Gaps = 7/207 (3%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRL 60
M+Y RG+ RD++ W G GWGF +LPYF + ED + + GG L V
Sbjct: 93 MVYVRGHARDFDHWAEEGATGWGFADVLPYFKRMEDNDG---GEDGWRGHGGPLHVQRGS 149
Query: 61 SPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFREN 120
+ AG++ D N + GFGP + T G R S + A+L+PA R+N
Sbjct: 150 RKNPLYGAFVEAGRQAGFELTDDYNGSKQEGFGPMEQTISGGRRWSAASAYLKPALKRKN 209
Query: 121 LIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIG 180
+ ++K +++I+++ +A GVE I + +I V + REVI++A ++ SP++LMLSGIG
Sbjct: 210 VSLVKGF-ARRVIIENQ-RAIGVE-IEAHKQIQVVKARREVIVAASSINSPKILMLSGIG 266
Query: 181 IQKHLKEKNITVIKDLP-VGENLQDHV 206
+HL+E I V+ D P VG NLQDH+
Sbjct: 267 PAEHLRENGIAVVADRPGVGRNLQDHM 293
>sp|B2TCJ8|BETA_BURPP Choline dehydrogenase OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=betA PE=3 SV=1
Length = 561
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 150/291 (51%), Gaps = 37/291 (12%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDA---AFHNTGG--YL 54
M Y RGN DY+ W AG W + LPYF K+E +DA A+H G ++
Sbjct: 97 MCYIRGNALDYDGWAAHAGLENWTYLDCLPYFRKAET------RDAGANAYHGGDGPVHV 150
Query: 55 TVSPRLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLE 113
T S + ++EA G + D+N Q GFGP D T T G R ST++ +L+
Sbjct: 151 TTSKPGNNPLFAAMVEA-GVQAGFPRTDDLNGYQQEGFGPMDRTVTANGRRASTARGYLD 209
Query: 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173
AK R NL I+ + ++L K +A GV Y++ G + + REV++ +GA+ SPQL
Sbjct: 210 RAKTRPNLTIVTHAVTDRVLFSGK-RAVGVAYLH-HGNAVNAQARREVLVCSGAIASPQL 267
Query: 174 LMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------C------FPGVLFSSNKDP 219
L SG+G L+E ++ ++ DLP VGENLQDH+ C +P + + + P
Sbjct: 268 LQRSGVGRSTWLRELDVPLVHDLPGVGENLQDHLEMYIQYECKEPISLYPALQWWNQ--P 325
Query: 220 AITLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
AI L ++ LK + + E GFI T+ + L+PN++ + + +N
Sbjct: 326 AIGLEWM--LKGTGIGASNQFEAG---GFIRTRDDDLWPNIQYHFLPVAIN 371
>sp|Q39A44|BETA_BURS3 Choline dehydrogenase OS=Burkholderia sp. (strain 383) GN=betA PE=3
SV=1
Length = 566
Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 150/290 (51%), Gaps = 35/290 (12%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-- 57
M Y RGN DY++W G W + LPYF K+E +D+ D +H G ++V+
Sbjct: 97 MCYIRGNALDYDNWSTHKGLENWTYLDCLPYFKKAET-RDVGPND--YHGGNGPVSVTTS 153
Query: 58 -PRLSPDETVKIIEA---AGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFL 112
P ++P + EA AG + D+N Q GFGP D T T G R ST++ +L
Sbjct: 154 KPGVNP-----LFEAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYL 208
Query: 113 EPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172
+ AK R NL I+ + +IL D K +A GV Y+ + ++ REV++ +GA+ SPQ
Sbjct: 209 DQAKVRPNLEIVTHALADRILFDGK-RASGVTYLRGSERAT-AHARREVLVCSGAIASPQ 266
Query: 173 LLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCF--------PGVLFSSNK---DPA 220
LL SG+G LKE +I V+ DLP VG+NLQDH+ P L+ + K P
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 221 ITLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
I L ++ L L + E GFI T+ + L+PN++ + + +N
Sbjct: 327 IGLEWM--LNGTGLGASNHFEAG---GFIRTRDDDLWPNIQYHFLPVAIN 371
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 139/278 (50%), Gaps = 30/278 (10%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFH-----NTG--GY 53
M++ RG DY++W P W + +L YF + E+ AA+H ++G G
Sbjct: 93 MMWVRGFASDYDEWAARAGPRWSYADVLGYFRRIENVT------AAWHFVSGDDSGVTGP 146
Query: 54 LTVSPRLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLE 113
L +S + SP AA +E N + GF T R G R ST+ A+L+
Sbjct: 147 LHISRQRSPRSVTAAWLAAARECGFAAARP-NSPRPEGFCETVVTQRRGARFSTADAYLK 205
Query: 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173
PA R+NL +L +++ID +A GVEY S G+ V + REV+L AGAV SPQL
Sbjct: 206 PAMRRKNLRVLTGATATRVVIDGD-RAVGVEY-QSDGQTRIVYARREVVLCAGAVNSPQL 263
Query: 174 LMLSGIGIQKHLKEKNITVIKDLP-VGENLQDH-VCFPGV------LFSSNKDPAITLHY 225
LMLSGIG + HL E +I + P VG NL DH V G LF++ K + +
Sbjct: 264 LMLSGIGDRDHLAEHDIDTVYHAPEVGCNLLDHLVTVLGFDVEKDSLFAAEKPGQLISYL 323
Query: 226 LRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELL 263
LR +G+ T V + GF+ ++ P++EL+
Sbjct: 324 LRR------RGMLTSNVGEAYGFVRSRPELKLPDLELI 355
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 139/278 (50%), Gaps = 30/278 (10%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFH-----NTG--GY 53
M++ RG DY++W P W + +L YF + E+ AA+H ++G G
Sbjct: 93 MMWVRGFASDYDEWAARAGPRWSYADVLGYFRRIENVT------AAWHFVSGDDSGVTGP 146
Query: 54 LTVSPRLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLE 113
L +S + SP AA +E N + GF T R G R ST+ A+L+
Sbjct: 147 LHISRQRSPRSVTAAWLAAARECGFAAARP-NSPRPEGFCETVVTQRRGARFSTADAYLK 205
Query: 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173
PA R+NL +L +++ID +A GVEY S G+ V + REV+L AGAV SPQL
Sbjct: 206 PAMRRKNLRVLTGATATRVVIDGD-RAVGVEY-QSDGQTRIVYARREVVLCAGAVNSPQL 263
Query: 174 LMLSGIGIQKHLKEKNITVIKDLP-VGENLQDH-VCFPGV------LFSSNKDPAITLHY 225
LMLSGIG + HL E +I + P VG NL DH V G LF++ K + +
Sbjct: 264 LMLSGIGDRDHLAEHDIDTVYHAPEVGCNLLDHLVTVLGFDVEKDSLFAAEKPGQLISYL 323
Query: 226 LRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELL 263
LR +G+ T V + GF+ ++ P++EL+
Sbjct: 324 LRR------RGMLTSNVGEAYGFVRSRPELKLPDLELI 355
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 130 bits (326), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 132/274 (48%), Gaps = 22/274 (8%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRL 60
M+Y RG+ DYN W R G GW + H LPYF K++ + + + G L VS
Sbjct: 139 MVYIRGHAEDYNRWHREGAEGWDYAHCLPYFRKAQRHELGANM---YRGGDGPLHVSRGK 195
Query: 61 SPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFREN 120
+ + A ++ D+N Q GFG D T G R ST+ A+L P R N
Sbjct: 196 TNHPLHQAFLQAARQAGYPFTEDMNGFQQEGFGWMDMTVHQGKRWSTACAYLHPVLSRPN 255
Query: 121 LIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIG 180
L T V ++L + +A GVEYI G+ +REVILS GA+ SPQLLMLSG+G
Sbjct: 256 LRAEVQTLVSRVLFEGT-RAVGVEYIKD-GQRHKAYVSREVILSGGAINSPQLLMLSGVG 313
Query: 181 IQKHLKEKNITVIKDLP-VGENLQDHV-------CFPGVLFSSNKDP----AITLHYLRY 228
L++ +I V+ LP VG+NLQDH+ C + S + P I L +L
Sbjct: 314 NADDLRKLDIPVVCHLPGVGQNLQDHLEVYVQQACTQPITLHSAQKPLRKVCIGLEWL-- 371
Query: 229 LKVAALKGISTVEVAKVVGFINTKRNSLYPNVEL 262
+ G + GFI ++ +P+++
Sbjct: 372 ---WSYTGDGATAHLETGGFIRSRPGVPHPDIQF 402
>sp|Q13NG7|BETA_BURXL Choline dehydrogenase OS=Burkholderia xenovorans (strain LB400)
GN=betA PE=3 SV=1
Length = 561
Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 148/288 (51%), Gaps = 31/288 (10%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGG--YLTVS 57
M Y RGN DY+ W AG W + LPYF K+E +DI A+H G ++T S
Sbjct: 97 MCYIRGNALDYDGWAAHAGLENWTYLDCLPYFRKAET-RDIGAN--AYHGGDGPVHVTTS 153
Query: 58 PRLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAK 116
+ ++EA G + D+N Q GFGP D T T G R ST++ +L+ AK
Sbjct: 154 KPGNNPLFAAMVEA-GVQAGFPRTDDLNGYQQEGFGPMDRTVTANGRRASTARGYLDRAK 212
Query: 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLML 176
R NL I+ + ++L K +A GV Y++ G + + + REV++ +GA+ SPQLL
Sbjct: 213 ARPNLTIVTHAVTDRVLFSGK-RAVGVSYLH-HGNVLNAQARREVLVCSGAIASPQLLQR 270
Query: 177 SGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------C------FPGVLFSSNKDPAIT 222
SG+G L+E ++ ++ DLP VGENLQDH+ C +P + + + PAI
Sbjct: 271 SGVGRSTWLRELDVPLVHDLPGVGENLQDHLEMYIQYECKEPVSLYPALQWWNQ--PAIG 328
Query: 223 LHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
L ++ GI + GFI T+ + +PN++ + + +N
Sbjct: 329 LEWM-----LNGTGIGASNQFEAGGFIRTRDDDPWPNIQYHFLPVAIN 371
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 129 bits (325), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 142/272 (52%), Gaps = 18/272 (6%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSP-R 59
M+Y RG+ D+++WE G GW ++ LPYF ++E++ I +D G T + +
Sbjct: 94 MVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAENW--IDGEDEYRGGDGPLSTCAGNK 151
Query: 60 LSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRE 119
++ + + AGKE D N Q GFGP T + G+R STS A+L AK R
Sbjct: 152 MTLNPLYRAFIDAGKEAGYPETSDYNGYQQEGFGPMHMTVKNGVRASTSNAYLSRAKKRS 211
Query: 120 NLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179
N ++K V +IL++ K +A GVE+ G++ + EVI SAG++GS QLL LSGI
Sbjct: 212 NFKLIKGVVVQRILLEEK-RAVGVEF-ELAGELRTCFAKNEVISSAGSIGSVQLLQLSGI 269
Query: 180 GIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAITLH-YLRYLK------- 230
G + L++ +T + LP VG+NLQDH+ V F + ITL+ L +
Sbjct: 270 GPKTVLEKAGVTPVHHLPGVGQNLQDHL---EVYFQYHCQKPITLNGKLDWFSKGLIGAE 326
Query: 231 -VAALKGISTVEVAKVVGFINTKRNSLYPNVE 261
+ KG+ + FI ++ +PN++
Sbjct: 327 WILTRKGLGATNHFESCAFIRSRAGLKWPNIQ 358
>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA
PE=3 SV=1
Length = 553
Score = 129 bits (324), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 149/295 (50%), Gaps = 32/295 (10%)
Query: 1 MLYQRGNDRDYNDWER-AGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPR 59
M Y RGN D W + G W + LPY+ K+E +DI D +H G ++V+
Sbjct: 97 MCYIRGNAMDLEGWSKLKGLENWTYADCLPYYKKAET-RDIGGND--YHGDHGPVSVA-- 151
Query: 60 LSPDETVKIIEAAGKELKIGTMY----DINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEP 114
+P + ++ A E + Y D+N Q GFGP D T T+ G R ST++ +L+
Sbjct: 152 -TPKDNNNVLFHAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTKNGRRSSTARGYLDM 210
Query: 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGK--ICHVNSTREVILSAGAVGSPQ 172
AK R NL I+ + KIL + K +A GVEYI K + V + +EV+L AGA+ SPQ
Sbjct: 211 AKERPNLTIITHAMTNKILFNGK-QAIGVEYIQGADKRDLKKVMANKEVLLCAGAIASPQ 269
Query: 173 LLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCF--------PGVLFSSNK---DPA 220
+L SG+G LK +I V+ DLP VGENLQDH+ P L+ + K PA
Sbjct: 270 ILQRSGVGESTFLKSMDIDVVHDLPGVGENLQDHLEMYLQYKCKQPVSLYPALKWYNQPA 329
Query: 221 ITLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERN 275
I +L +L KGI + GFI + +PN++ + + +N N
Sbjct: 330 IGAEWL-FLG----KGIGASNQFEAGGFIRSSDEFEWPNIQYHFLPVAINYNGSN 379
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 129 bits (324), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 142/272 (52%), Gaps = 18/272 (6%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSP-R 59
M+Y RG+ D+++WE G GW ++ LPYF ++E++ I +D G T + +
Sbjct: 94 MVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAENW--IDGEDEYRGGDGPLSTCAGNK 151
Query: 60 LSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRE 119
++ + + AGKE D N Q GFGP T + G+R STS A+L AK R
Sbjct: 152 MTLNPLYRAFIDAGKEAGYPETSDYNGYQQEGFGPMHMTVKNGVRASTSNAYLSRAKKRS 211
Query: 120 NLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179
N ++K V +IL++ K +A GVE+ G++ + EVI SAG++GS QLL LSGI
Sbjct: 212 NFKLIKGVVVQRILLEEK-RAVGVEF-ELAGELRTCFAKNEVISSAGSIGSVQLLQLSGI 269
Query: 180 GIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAITLH-YLRYLK------- 230
G + L++ +T + LP VG+NLQDH+ V F + ITL+ L +
Sbjct: 270 GPKTVLEKAGVTPVYHLPGVGQNLQDHL---EVYFQYHCQKPITLNGKLDWFSKGLIGTE 326
Query: 231 -VAALKGISTVEVAKVVGFINTKRNSLYPNVE 261
+ KG+ + FI ++ +PN++
Sbjct: 327 WILTRKGLGATNHFESCAFIRSRAGLKWPNIQ 358
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 153/307 (49%), Gaps = 34/307 (11%)
Query: 1 MLYQRGNDRDYNDWER-AGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RGN DY+ W + G W + LPYF K+E +DI D +H G ++V+ P
Sbjct: 96 MCYIRGNAMDYDGWAKLPGLEDWTYLDCLPYFRKAET-RDIGPND--YHGGEGPVSVTTP 152
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAKF 117
+ + + AG + D+N Q GFGP D T T G R ST++ +L+ AK
Sbjct: 153 KAGNNPLFHAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDTAKK 212
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEYI-NSQGKICHVNSTREVILSAGAVGSPQLLML 176
R L I+ + KIL + K +A GV Y+ S + + +EVI+S+GA+ SPQLL
Sbjct: 213 RSTLTIVTHALTDKILFEGK-RAVGVSYLQGSTEERVEARARKEVIVSSGAIASPQLLQR 271
Query: 177 SGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------C------FPGVLFSSNKDPAIT 222
SG+G + L+ +I V+ DLP VGENLQDH+ C +P +L+ + PAI
Sbjct: 272 SGVGPRALLESLDIPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLLWWNQ--PAIG 329
Query: 223 LHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGK---- 278
+L GI + GFI T+ +PN++ + + +N N K
Sbjct: 330 AEWL-----FNGTGIGASNQFEAGGFIRTREEFEWPNIQYHFLPVAINYNGSNGVKEHGF 384
Query: 279 -SVMGSL 284
+ MGS+
Sbjct: 385 QAHMGSM 391
>sp|Q88CW6|BETA_PSEPK Choline dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betA
PE=3 SV=1
Length = 565
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 158/308 (51%), Gaps = 36/308 (11%)
Query: 1 MLYQRGNDRDYNDW-ERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RGN D++ W E G W + LPYF K+E +DI D +H G ++V+ P
Sbjct: 96 MCYIRGNAMDFDGWAELPGLEDWTYLDCLPYFRKAET-RDIGPND--YHGGEGPVSVTTP 152
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAKF 117
+ + + AG + D+N Q GFGP D T T+ G R ST++ +L+ AK
Sbjct: 153 KAGNNPLFHAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRTVTKNGRRSSTARGYLDQAKK 212
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEYI--NSQGKICHVNSTREVILSAGAVGSPQLLM 175
R NL I+ + ++L D K +A GV Y+ +S+ ++ + +EVI+S+GA+ SPQLL
Sbjct: 213 RPNLTIVTHALTDRVLFDGK-RAIGVTYLVGDSEERV-EARARKEVIVSSGAIASPQLLQ 270
Query: 176 LSGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------C------FPGVLFSSNKDPAI 221
SG+G + L+ +I V+ DLP VGENLQDH+ C +P +L+ + PAI
Sbjct: 271 RSGVGPRALLESLDIPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLLWWNQ--PAI 328
Query: 222 TLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGK--- 278
++ GI + GFI T+ +PN++ + + +N N K
Sbjct: 329 GAEWM-----FNGTGIGASNQFEAGGFIRTRPEFKWPNIQYHFLPVAINYNGSNGVKEHG 383
Query: 279 --SVMGSL 284
+ MGS+
Sbjct: 384 FQAHMGSM 391
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 139/272 (51%), Gaps = 14/272 (5%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRL 60
M+Y RG++ DY+ WE+A WG+ L F + E Q + + H G L VS
Sbjct: 91 MVYIRGHEDDYHAWEQAAGRYWGWYRALELFKRLECNQRFDKSE--HHGVDGELAVSDLK 148
Query: 61 SPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFREN 120
+ K AG E I D N + G G + T + G R S+++AFL R N
Sbjct: 149 YINPLSKAFVQAGMEANINFNGDFNGEYQDGVGFYQVTQKNGQRWSSARAFLHGVLSRPN 208
Query: 121 LIILKNTEVIKILIDSKLKAYGVEYI--NSQGKICHVNSTREVILSAGAVGSPQLLMLSG 178
L I+ + KIL + + KA GV YI N ++ S EV+LS GAVG+P LLMLSG
Sbjct: 209 LDIITDAHASKILFEDR-KAVGVSYIKKNMHHQV-KTTSGGEVLLSLGAVGTPHLLMLSG 266
Query: 179 IGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDP-AITLHYLR------YLK 230
+G LKE ++++ DLP VG+NLQDH+ + +++++P + L ++ +
Sbjct: 267 VGAAAELKEHGVSLVHDLPEVGKNLQDHLDITLMCAANSREPIGVALSFIPRGVSGLFSY 326
Query: 231 VAALKGISTVEVAKVVGFINTKRNSLYPNVEL 262
V +G T VA+ GF+ + + PN++
Sbjct: 327 VFKREGFLTSNVAESGGFVKSSPDRDRPNLQF 358
>sp|Q8P5D7|BETA_XANCP Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=betA PE=3
SV=1
Length = 556
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 152/290 (52%), Gaps = 33/290 (11%)
Query: 1 MLYQRGNDRDYNDW-ERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RGN D++ W +R G WG++ +LPYF K+E +DI D +H G ++V+ P
Sbjct: 96 MCYIRGNALDFDHWAKRPGLEDWGYRDVLPYFRKAET-RDIGAND--YHGGEGPVSVATP 152
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAKF 117
+ + + + AG + D+N Q GFGP D T T G R ST++ +L+ AK
Sbjct: 153 KNDNNVLFQAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDMAKP 212
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEYI---NSQGKICHVNSTREVILSAGAVGSPQLL 174
R++L I+ + +IL K +A GV Y+ +S+G H + REV++ AGA+ SPQLL
Sbjct: 213 RDSLHIVTHATTDRILFAGK-RAVGVHYLVGNSSEGIDAH--ARREVLVCAGAIASPQLL 269
Query: 175 MLSGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------C------FPGVLFSSNKDPA 220
SG+G L+ ++ ++ DLP VG+NLQDH+ C +P + + + PA
Sbjct: 270 QRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHLEVYMQYACTKPVSLYPALQWWNQ--PA 327
Query: 221 ITLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
I +L A G + GFI T+ +PN++ + + +N
Sbjct: 328 IGAEWL-----FAGTGTGASNQFEAGGFIRTREEFDWPNIQYHFLPVAIN 372
>sp|B0RNU9|BETA_XANCB Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain B100) GN=betA PE=3 SV=1
Length = 556
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 152/290 (52%), Gaps = 33/290 (11%)
Query: 1 MLYQRGNDRDYNDW-ERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RGN D++ W +R G WG++ +LPYF K+E +DI D +H G ++V+ P
Sbjct: 96 MCYIRGNALDFDHWAKRPGLEDWGYRDVLPYFRKAET-RDIGAND--YHGGEGPVSVATP 152
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAKF 117
+ + + + AG + D+N Q GFGP D T T G R ST++ +L+ AK
Sbjct: 153 KNDNNVLFQAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDMAKP 212
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEYI---NSQGKICHVNSTREVILSAGAVGSPQLL 174
R++L I+ + +IL K +A GV Y+ +S+G H + REV++ AGA+ SPQLL
Sbjct: 213 RDSLHIVTHATTDRILFAGK-RAVGVHYLVGNSSEGIDAH--ARREVLVCAGAIASPQLL 269
Query: 175 MLSGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------C------FPGVLFSSNKDPA 220
SG+G L+ ++ ++ DLP VG+NLQDH+ C +P + + + PA
Sbjct: 270 QRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHLEVYMQYACTKPVSLYPALQWWNQ--PA 327
Query: 221 ITLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
I +L A G + GFI T+ +PN++ + + +N
Sbjct: 328 IGAEWL-----FAGTGTGASNQFEAGGFIRTREEFDWPNIQYHFLPVAIN 372
>sp|Q4UYN5|BETA_XANC8 Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=betA PE=3 SV=1
Length = 556
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 152/290 (52%), Gaps = 33/290 (11%)
Query: 1 MLYQRGNDRDYNDW-ERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RGN D++ W +R G WG++ +LPYF K+E +DI D +H G ++V+ P
Sbjct: 96 MCYIRGNALDFDHWAKRPGLEDWGYRDVLPYFRKAET-RDIGAND--YHGGEGPVSVATP 152
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAKF 117
+ + + + AG + D+N Q GFGP D T T G R ST++ +L+ AK
Sbjct: 153 KNDNNVLFQAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDMAKP 212
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEYI---NSQGKICHVNSTREVILSAGAVGSPQLL 174
R++L I+ + +IL K +A GV Y+ +S+G H + REV++ AGA+ SPQLL
Sbjct: 213 RDSLHIVTHATTDRILFAGK-RAVGVHYLVGNSSEGIDAH--ARREVLVCAGAIASPQLL 269
Query: 175 MLSGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------C------FPGVLFSSNKDPA 220
SG+G L+ ++ ++ DLP VG+NLQDH+ C +P + + + PA
Sbjct: 270 QRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHLEVYMQYACTKPVSLYPALQWWNQ--PA 327
Query: 221 ITLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
I +L A G + GFI T+ +PN++ + + +N
Sbjct: 328 IGAEWL-----FAGTGTGASNQFEAGGFIRTREEFDWPNIQYHFLPVAIN 372
>sp|B1K707|BETA_BURCC Choline dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3)
GN=betA PE=3 SV=1
Length = 566
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 149/290 (51%), Gaps = 35/290 (12%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-- 57
M Y RGN DY++W G W + LPYF K+E +D+ D +H G ++V+
Sbjct: 97 MCYIRGNALDYDNWSTHKGLENWTYLDCLPYFKKAET-RDVGPND--YHGGSGPVSVTTS 153
Query: 58 -PRLSPDETVKIIEA---AGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFL 112
P ++P + EA AG + D+N Q GFGP D T T G R ST++ +L
Sbjct: 154 KPGVNP-----LFEAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYL 208
Query: 113 EPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172
+ AK R NL I+ + +IL D K +A GV Y+ + ++ REV++ +GA+ SPQ
Sbjct: 209 DQAKVRPNLEIVTHALADRILFDGK-RASGVTYLRGSERAT-AHARREVLVCSGAIASPQ 266
Query: 173 LLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCF--------PGVLFSSNK---DPA 220
LL SG+G LKE +I V+ DLP VG+NLQDH+ P L+ + K P
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 221 ITLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
I L ++ L L + E GFI T+ + +PN++ + + +N
Sbjct: 327 IGLEWM--LNGTGLGASNHFEAG---GFIRTRDDDPWPNIQYHFLPVAIN 371
>sp|A0B2F7|BETA_BURCH Choline dehydrogenase OS=Burkholderia cenocepacia (strain HI2424)
GN=betA PE=3 SV=1
Length = 566
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 149/290 (51%), Gaps = 35/290 (12%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-- 57
M Y RGN DY++W G W + LPYF K+E +D+ D +H G ++V+
Sbjct: 97 MCYIRGNALDYDNWSTHKGLENWTYLDCLPYFKKAET-RDVGPND--YHGGSGPVSVTTS 153
Query: 58 -PRLSPDETVKIIEA---AGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFL 112
P ++P + EA AG + D+N Q GFGP D T T G R ST++ +L
Sbjct: 154 KPGVNP-----LFEAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYL 208
Query: 113 EPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172
+ AK R NL I+ + +IL D K +A GV Y+ + ++ REV++ +GA+ SPQ
Sbjct: 209 DQAKVRPNLEIVTHALADRILFDGK-RASGVTYLRGSERAT-AHARREVLVCSGAIASPQ 266
Query: 173 LLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCF--------PGVLFSSNK---DPA 220
LL SG+G LKE +I V+ DLP VG+NLQDH+ P L+ + K P
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 221 ITLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
I L ++ L L + E GFI T+ + +PN++ + + +N
Sbjct: 327 IGLEWM--LNGTGLGASNHFEAG---GFIRTRDDDPWPNIQYHFLPVAIN 371
>sp|Q1BQE2|BETA_BURCA Choline dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054)
GN=betA PE=3 SV=1
Length = 566
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 149/290 (51%), Gaps = 35/290 (12%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-- 57
M Y RGN DY++W G W + LPYF K+E +D+ D +H G ++V+
Sbjct: 97 MCYIRGNALDYDNWSTHKGLENWTYLDCLPYFKKAET-RDVGPND--YHGGSGPVSVTTS 153
Query: 58 -PRLSPDETVKIIEA---AGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFL 112
P ++P + EA AG + D+N Q GFGP D T T G R ST++ +L
Sbjct: 154 KPGVNP-----LFEAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYL 208
Query: 113 EPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172
+ AK R NL I+ + +IL D K +A GV Y+ + ++ REV++ +GA+ SPQ
Sbjct: 209 DQAKVRPNLEIVTHALADRILFDGK-RASGVTYLRGSERAT-AHARREVLVCSGAIASPQ 266
Query: 173 LLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCF--------PGVLFSSNK---DPA 220
LL SG+G LKE +I V+ DLP VG+NLQDH+ P L+ + K P
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 221 ITLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
I L ++ L L + E GFI T+ + +PN++ + + +N
Sbjct: 327 IGLEWM--LNGTGLGASNHFEAG---GFIRTRDDDPWPNIQYHFLPVAIN 371
>sp|A5WA97|BETA_PSEP1 Choline dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=betA PE=3 SV=1
Length = 565
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 158/308 (51%), Gaps = 36/308 (11%)
Query: 1 MLYQRGNDRDYNDW-ERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RGN D++ W E G W + LPYF K+E +DI D +H G ++V+ P
Sbjct: 96 MCYIRGNAMDFDGWAELPGLEDWTYLDCLPYFRKAET-RDIGPND--YHGGDGPVSVATP 152
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAKF 117
+ + + AG + D+N Q GFGP D + T+ G R ST++ +L+ AK
Sbjct: 153 KAGNNPLFHAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRSVTKNGRRSSTARGYLDQAKK 212
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEYI--NSQGKICHVNSTREVILSAGAVGSPQLLM 175
R NL I+ + ++L D K +A GV Y+ +S+ ++ + +EVI+S+GA+ SPQLL
Sbjct: 213 RPNLTIVTHALTDRVLFDGK-RAVGVTYLVGDSEERV-EARARKEVIVSSGAIASPQLLQ 270
Query: 176 LSGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------C------FPGVLFSSNKDPAI 221
SG+G + L+ +I V+ DLP VGENLQDH+ C +P +L+ + PAI
Sbjct: 271 RSGVGPRALLESLDIPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLLWWNQ--PAI 328
Query: 222 TLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGK--- 278
+L GI + GFI T+ +PN++ + + +N N K
Sbjct: 329 GAEWL-----FNGTGIGASNQFEAGGFIRTRPEFKWPNIQYHFLPVAINYNGSNGVKEHG 383
Query: 279 --SVMGSL 284
+ MGS+
Sbjct: 384 FQAHMGSM 391
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 137/279 (49%), Gaps = 32/279 (11%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQ-DISRQDAAFHNTGGYLTVSPR 59
M+Y RG+ DY W+R G GW + H LPYF K++ + SR + G L R
Sbjct: 137 MVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHELGASR----YRGADGPL----R 188
Query: 60 LSPDETVKIIEAAGKELKIGTMY----DINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPA 115
+S +T + A E Y D+N Q GFG D T G R S + A+L PA
Sbjct: 189 VSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPA 248
Query: 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175
R NL T V ++L + +A GVEY+ + G+ +++EVILS GA+ SPQLLM
Sbjct: 249 LSRTNLKAEAETLVSRVLFEGT-RAVGVEYVKN-GQSHRAYASKEVILSGGAINSPQLLM 306
Query: 176 LSGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------CFPGVLFSSNKDP----AITL 223
LSGIG LK+ I V+ LP VG+NLQDH+ C + S + P I L
Sbjct: 307 LSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGL 366
Query: 224 HYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVEL 262
+L K + +E GFI ++ +P+++
Sbjct: 367 EWL--WKFTGEGATAHLETG---GFIRSQPGVPHPDIQF 400
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRL 60
M+Y RG+ RDY+ W +G GW + +LPYF + E+ S + T G L +
Sbjct: 92 MVYVRGHARDYDHWSESGARGWAYADVLPYFKRMEN---SSGGQEGWRGTNGPLYIQRGK 148
Query: 61 SPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFREN 120
+ AG E D N ++ GFGP + T G R S + A+L+PA R N
Sbjct: 149 RDNPLFHAFVEAGHEAGFEVTEDYNGEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPN 208
Query: 121 LIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIG 180
+ ++K KI+++ K +A GVE I + + + REVI++A ++ SP+LLMLSGIG
Sbjct: 209 VKLVKGL-ARKIVLEGK-RAVGVE-IEAGRSFSTIRARREVIIAASSINSPKLLMLSGIG 265
Query: 181 IQKHLKEKNITVIKDLP-VGENLQDHV 206
LKE I V+ D P VG+NLQDH+
Sbjct: 266 PAAQLKEHGIEVVADRPGVGQNLQDHL 292
>sp|A9AMZ9|BETA_BURM1 Choline dehydrogenase OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=betA PE=3 SV=1
Length = 566
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 148/287 (51%), Gaps = 29/287 (10%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-- 57
M Y RGN DY++W G W + LPYF K+E +DI D +H G ++V+
Sbjct: 97 MCYIRGNALDYDNWATHQGLENWTYLDCLPYFKKAET-RDIGPND--YHGGDGPVSVTTS 153
Query: 58 -PRLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPA 115
P ++P + + AG + D+N Q GFGP D T T G R ST++ +L+ A
Sbjct: 154 KPGVNP--LFEAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQA 211
Query: 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175
K R NL I+ + +IL D K +A GV Y+ + ++ REV++ +GA+ SPQLL
Sbjct: 212 KTRPNLEIVTHALADRILFDGK-RASGVTYLRGNERAT-AHARREVLVCSGAIASPQLLQ 269
Query: 176 LSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCF--------PGVLFSSNK---DPAITL 223
SG+G LKE +I ++ DLP VG+NLQDH+ P L+ + K P I L
Sbjct: 270 RSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPKIGL 329
Query: 224 HYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
++ L L + E GFI T+ + +PN++ + + +N
Sbjct: 330 EWM--LNGTGLGASNHFEAG---GFIRTRDDDPWPNIQYHFLPVAIN 371
>sp|Q1IG70|BETA_PSEE4 Choline dehydrogenase OS=Pseudomonas entomophila (strain L48)
GN=betA PE=3 SV=1
Length = 565
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 158/308 (51%), Gaps = 36/308 (11%)
Query: 1 MLYQRGNDRDYNDW-ERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RGN D++ W E G W + LPYF K+E +DI D +H G ++V+ P
Sbjct: 96 MCYIRGNAMDFDGWAELPGLEDWTYLDCLPYFRKAET-RDIGPND--YHGGEGPVSVATP 152
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAKF 117
+ + + AG + D+N Q GFGP D + T+ G R ST++ +L+ AK
Sbjct: 153 KAGNNPLFHAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRSVTKKGRRSSTARGYLDQAKK 212
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEYI--NSQGKICHVNSTREVILSAGAVGSPQLLM 175
R NL I+ + ++L D K +A GV Y+ +S+ ++ + +EVI+S+GA+ SPQLL
Sbjct: 213 RPNLTIVTHALSDRVLFDGK-RAVGVTYLVGDSEERV-EARARKEVIVSSGAIASPQLLQ 270
Query: 176 LSGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------C------FPGVLFSSNKDPAI 221
SG+G + L+ +I V+ DLP VGENLQDH+ C +P +L+ + PAI
Sbjct: 271 RSGVGPRALLESLDIPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLLWWNQ--PAI 328
Query: 222 TLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGK--- 278
+L GI + GFI T+ +PN++ + + +N N K
Sbjct: 329 GAEWL-----FNGTGIGASNQFEAGGFIRTRPEFKWPNIQYHFLPVAINYNGSNGVKEHG 383
Query: 279 --SVMGSL 284
+ MGS+
Sbjct: 384 FQAHMGSM 391
>sp|B1Z034|BETA_BURA4 Choline dehydrogenase OS=Burkholderia ambifaria (strain MC40-6)
GN=betA PE=3 SV=1
Length = 566
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 150/290 (51%), Gaps = 35/290 (12%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-- 57
M Y RGN DY++W G W + LPYF K+E +D+ D +H G ++V+
Sbjct: 97 MCYIRGNALDYDNWSTHKGLENWTYLDCLPYFKKAET-RDVGPND--YHGGDGPVSVTTS 153
Query: 58 -PRLSPDETVKIIEA---AGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFL 112
P ++P + EA AG + D+N Q GFGP D T T G R ST++ +L
Sbjct: 154 KPGVNP-----LFEAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYL 208
Query: 113 EPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172
+ AK R NL I+ + +IL D K +A GV Y+ + + ++ REV++ +GA+ SPQ
Sbjct: 209 DQAKGRPNLEIVTHALADRILFDGK-RASGVTYLRGSER-ANAHARREVLVCSGAIASPQ 266
Query: 173 LLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCF--------PGVLFSSNK---DPA 220
LL SG+G LKE +I ++ DLP VG+NLQDH+ P L+ + K P
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 221 ITLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
I L ++ L L + E GFI T+ + +PN++ + + +N
Sbjct: 327 IGLEWM--LNGTGLGASNHFEAG---GFIRTRDDDPWPNIQYHFLPVAIN 371
>sp|B0KN19|BETA_PSEPG Choline dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betA
PE=3 SV=1
Length = 565
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 159/308 (51%), Gaps = 36/308 (11%)
Query: 1 MLYQRGNDRDYNDW-ERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RGN D++ W E G W + LPYF K+E +DI D +H G ++V+ P
Sbjct: 96 MCYIRGNAMDFDGWAELPGLQDWTYLDCLPYFRKAET-RDIGPND--YHGGEGPVSVATP 152
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAKF 117
+ + + AG + D+N Q GFGP D + T+ G R ST++ +L+ AK
Sbjct: 153 KAGNNPLFHAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRSVTKNGRRSSTARGYLDQAKK 212
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEYI--NSQGKICHVNSTREVILSAGAVGSPQLLM 175
R NL I+ + ++L D K +A GV Y+ +S+ ++ + +EVI+S+GA+ SPQLL
Sbjct: 213 RPNLTIVTHALSDRVLFDGK-RAVGVTYLVGDSEERV-EARARKEVIVSSGAIASPQLLQ 270
Query: 176 LSGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------C------FPGVLFSSNKDPAI 221
SG+G + L+ +I V+ DLP VGENLQDH+ C +P +L+ + PAI
Sbjct: 271 RSGVGPRALLESLDIPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLLWWNQ--PAI 328
Query: 222 TLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGK--- 278
++ K + + E GFI T+ +PN++ + + +N N K
Sbjct: 329 GAEWM--FKGTGIGASNQFEAG---GFIRTRPEFKWPNIQYHFLPVAINYNGSNGVKEHG 383
Query: 279 --SVMGSL 284
+ MGS+
Sbjct: 384 FQAHMGSM 391
>sp|Q3K5H3|BETA_PSEPF Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=betA PE=3 SV=1
Length = 567
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 152/307 (49%), Gaps = 34/307 (11%)
Query: 1 MLYQRGNDRDYNDWER-AGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RGN DY+ W + G W + LPYF K+E +DI D +H G ++V+ P
Sbjct: 96 MCYIRGNAMDYDGWAKLPGLEDWSYLDCLPYFRKAET-RDIGPND--YHGGDGPVSVTTP 152
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAKF 117
+ + + AG + D+N Q GFGP D T T G R ST++ +L+ AK
Sbjct: 153 KAGNNPLFHAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRTVTPNGRRASTARGYLDVAKK 212
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEY-INSQGKICHVNSTREVILSAGAVGSPQLLML 176
R L I+ + K+L + K +A GV Y + + + + +EVI+ +GA+ SPQLL
Sbjct: 213 RSTLTIVTHALTDKVLFEGK-RAVGVRYLVGAAEERVEARARKEVIVCSGAIASPQLLQR 271
Query: 177 SGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------C------FPGVLFSSNKDPAIT 222
SG+G K L+ +I V+ DLP VGENLQDH+ C +P +L+ + PAI
Sbjct: 272 SGVGPAKLLESLDIPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLLWYNQ--PAIG 329
Query: 223 LHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGK---- 278
+L GI + GFI T+ +PN++ + + +N N K
Sbjct: 330 AEWL-----FNGTGIGASNQFEAGGFIRTRPEFEWPNIQYHFLPVAINYNGSNGVKEHGF 384
Query: 279 -SVMGSL 284
+ MGS+
Sbjct: 385 QAHMGSM 391
>sp|Q9L4K0|BETA2_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=1 SV=1
Length = 558
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 142/288 (49%), Gaps = 25/288 (8%)
Query: 1 MLYQRGNDRDYNDWERAGNPG---WGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS 57
M Y RGN DY+ W A PG W + LPYF KSE +DI D +H G ++V+
Sbjct: 98 MCYIRGNALDYDHW--AKQPGLEEWDYLSCLPYFKKSET-RDIGPND--YHGGDGPVSVT 152
Query: 58 -PRLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDT-TTRYGLRCSTSKAFLEPA 115
P+ + + AGK+ D+N Q GFGP D T G R ST++ +L+ A
Sbjct: 153 TPKAGNNPLYRTFIEAGKQAGYPETEDVNGYQQEGFGPMDRFVTPKGRRASTARGYLDTA 212
Query: 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175
K R NL I I + K +A GV Y +G+ + REV+L GA+ SPQ+L
Sbjct: 213 KQRSNLTIETRAVTDVIEFEGK-RAVGVRY-EQKGQPKQARARREVLLCGGAIASPQILQ 270
Query: 176 LSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAITLHYLRYL---KV 231
SG+G + LKE I V+ +LP VGENLQDH+ + K+P L++ K+
Sbjct: 271 RSGVGNPEWLKELGIPVVHELPGVGENLQDHLEM--YIQYECKEPISLYPALKWYNQPKI 328
Query: 232 AAL-----KGISTVEVAKVVGFINTKRNSLYPNVE--LLSIRIPMNSK 272
A G+ + GFI ++ + +PN++ L I I N K
Sbjct: 329 GAEWLFKGTGVGASNQFESCGFIRSRDDEEWPNLQYHFLPIAISYNGK 376
>sp|A4JJG6|BETA_BURVG Choline dehydrogenase OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=betA PE=3 SV=1
Length = 566
Score = 127 bits (318), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 147/287 (51%), Gaps = 29/287 (10%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-- 57
M Y RGN DY++W G W + LPYF K+E +D+ D +H G ++V+
Sbjct: 97 MCYIRGNALDYDNWSTHQGLERWTYLDCLPYFRKAET-RDVGPND--YHGGDGPVSVTTS 153
Query: 58 -PRLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPA 115
P +P + + AG + D+N Q GFGP D T T G R ST++ +L+ A
Sbjct: 154 KPGANP--LFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQA 211
Query: 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175
K R NL I+ + +IL D K +A GV Y+ + ++ REV++ +GA+ SPQLL
Sbjct: 212 KTRPNLEIVTHALADRILFDGK-RASGVAYLRGSERAT-AHARREVLVCSGAIASPQLLQ 269
Query: 176 LSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCF--------PGVLFSSNK---DPAITL 223
SG+G LKE +I ++ DLP VG+NLQDH+ P L+ + K P I L
Sbjct: 270 RSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPKIGL 329
Query: 224 HYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
++ L L + E GFI T+ + +PN++ + + +N
Sbjct: 330 EWM--LNGTGLGASNHFEAG---GFIRTRDDDPWPNIQYHFLPVAIN 371
>sp|C3K3D3|BETA_PSEFS Choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25)
GN=betA PE=3 SV=1
Length = 567
Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 154/307 (50%), Gaps = 34/307 (11%)
Query: 1 MLYQRGNDRDYNDWER-AGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RGN DY++W + G W + LPYF K+E +DI D +H G ++V+ P
Sbjct: 96 MCYIRGNAMDYDNWAKLPGLENWTYLDCLPYFRKAET-RDIGPND--YHGGEGPVSVTTP 152
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAKF 117
+ + + AG + D+N Q GFGP D T T+ G R ST++ +L+ AK
Sbjct: 153 KAGNNPLFHAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTKNGRRASTARGYLDTAKK 212
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEY-INSQGKICHVNSTREVILSAGAVGSPQLLML 176
R L I+ + K+L + K +A GV Y I + + + +EV++ +GA+ SPQLL
Sbjct: 213 RSTLTIVTHALTDKVLFEGK-RAVGVRYLIGAAEERVEARARKEVLVCSGAIASPQLLQR 271
Query: 177 SGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------C------FPGVLFSSNKDPAIT 222
SG+G K L+ +I V+ DLP VGENLQDH+ C +P +L+ + PAI
Sbjct: 272 SGVGPAKLLESLDIPVVHDLPGVGENLQDHLELYLQYACTQPVSLYPSLLWYNQ--PAIG 329
Query: 223 LHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGK---- 278
+L GI + GFI ++ +PN++ + + +N N K
Sbjct: 330 AEWL-----FNGTGIGASNQFEAGGFIRSRPEFDWPNIQYHFLPVAINYNGSNGVKEHGF 384
Query: 279 -SVMGSL 284
+ MGS+
Sbjct: 385 QAHMGSM 391
>sp|Q2T6D0|BETA_BURTA Choline dehydrogenase OS=Burkholderia thailandensis (strain E264 /
ATCC 700388 / DSM 13276 / CIP 106301) GN=betA PE=3 SV=1
Length = 565
Score = 126 bits (317), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 150/287 (52%), Gaps = 29/287 (10%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-- 57
M Y RGN DY++W G W + LPYF K+E +D+ D +H G ++V+
Sbjct: 97 MCYIRGNALDYDNWSTHKGLEDWTYLDCLPYFRKAET-RDVGPND--YHGGDGPVSVTTS 153
Query: 58 -PRLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPA 115
P ++P + + AG + D+N Q GFGP D T T G R ST++ +L+ A
Sbjct: 154 KPGVNP--LFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPRGRRASTARGYLDQA 211
Query: 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175
+ R NL I+ + +IL K +A GV +++ ++ ++ REV++ +GA+ SPQLL
Sbjct: 212 RARPNLEIVTHALADRILFSGK-RATGVTFLHGSARVT-AHARREVLVCSGAIASPQLLQ 269
Query: 176 LSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCF--------PGVLFSSNK---DPAITL 223
SG+G + L+E +I V+ DLP VG NLQDH+ P L+ + K P I L
Sbjct: 270 RSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKEPVSLYPALKWWNQPKIGL 329
Query: 224 HYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
++ + L + E GFI T+ + L+PN++ + + +N
Sbjct: 330 DWM--INGTGLGASNHFEAG---GFIRTRDDDLWPNIQYHFLPVAIN 371
>sp|Q0B711|BETA_BURCM Choline dehydrogenase OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=betA PE=3 SV=1
Length = 566
Score = 126 bits (317), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 148/290 (51%), Gaps = 35/290 (12%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-- 57
M Y RGN DY++W G W + LPYF K+E +D+ D +H G ++V+
Sbjct: 97 MCYIRGNALDYDNWSTHKGLENWTYLDCLPYFKKAET-RDVGPND--YHGGNGPVSVTTS 153
Query: 58 -PRLSPDETVKIIEA---AGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFL 112
P +P + EA AG + D+N Q GFGP D T T G R ST++ +L
Sbjct: 154 KPGANP-----LFEAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYL 208
Query: 113 EPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172
+ AK R NL I+ + +IL D K +A GV Y+ + ++ REV++ +GA+ SPQ
Sbjct: 209 DQAKGRPNLEIVTHALADRILFDGK-RASGVTYLRGSER-ASAHARREVLVCSGAIASPQ 266
Query: 173 LLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCF--------PGVLFSSNK---DPA 220
LL SG+G LKE +I ++ DLP VG+NLQDH+ P L+ + K P
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 221 ITLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
I L ++ L L + E GFI T+ + +PN++ + + +N
Sbjct: 327 IGLEWM--LNGTGLGASNHFEAG---GFIRTRDDDPWPNIQYHFLPVAIN 371
>sp|Q8PPG8|BETA_XANAC Choline dehydrogenase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=betA PE=3 SV=1
Length = 556
Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 149/290 (51%), Gaps = 33/290 (11%)
Query: 1 MLYQRGNDRDYNDW-ERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RGN D++ W +R G W ++ +LPYF K+E +DI D +H G ++V+ P
Sbjct: 96 MCYIRGNALDFDHWAKRPGLEDWSYRDVLPYFRKAET-RDIGAND--YHGGDGPVSVATP 152
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAKF 117
+ + + AG + D+N Q GFGP D T T G R ST++ +L+ AK
Sbjct: 153 KNDNNVLFHAMVEAGVQAGYPRTGDLNGYQQEGFGPMDRTVTPRGRRASTARGYLDMAKP 212
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEYI---NSQGKICHVNSTREVILSAGAVGSPQLL 174
R+ L I+ + +IL K +A GV Y+ +S+G H + REV++ AGA+ SPQLL
Sbjct: 213 RDGLHIVTHATTDRILFAGK-RAIGVHYLVGNSSEGIDAH--ARREVLVCAGAIASPQLL 269
Query: 175 MLSGIGIQKHLKEKNITVIKDLP-VGENLQDHV-------C------FPGVLFSSNKDPA 220
SG+G L+ ++ ++ DLP VG+NLQDH+ C +P + + + PA
Sbjct: 270 QRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHLEVYIQYACTKPVSLYPALQWWNQ--PA 327
Query: 221 ITLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
I +L A G + GFI T+ +PN++ + + +N
Sbjct: 328 IGAQWL-----FAGTGTGASNQFEAGGFIRTREEFDWPNIQYHFLPVAIN 372
>sp|Q62CH8|BETA_BURMA Choline dehydrogenase OS=Burkholderia mallei (strain ATCC 23344)
GN=betA PE=3 SV=1
Length = 565
Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 149/287 (51%), Gaps = 29/287 (10%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-- 57
M Y RGN DY++W G W + LPYF K+E +D+ D +H G ++V+
Sbjct: 97 MCYIRGNALDYDNWATHKGLEDWAYLDCLPYFRKAET-RDVGPND--YHGGDGPVSVTTS 153
Query: 58 -PRLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPA 115
P ++P + + AG + D+N Q GFGP D T T G R ST++ +L+ A
Sbjct: 154 KPGVNP--LFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPRGRRASTARGYLDQA 211
Query: 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175
+ R NL I+ + +IL K +A GV +++ ++ ++ REV++ +GA+ SPQLL
Sbjct: 212 RARPNLEIVTHALADRILFSGK-RATGVTFLHGSARVT-AHARREVLVCSGAIASPQLLQ 269
Query: 176 LSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCF--------PGVLFSSNK---DPAITL 223
SG+G + L+E +I V+ DLP VG NLQDH+ P L+ + K P I L
Sbjct: 270 RSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKEPVSLYPALKWWNQPKIGL 329
Query: 224 HYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
++ L L + E GFI T+ + +PN++ + + +N
Sbjct: 330 EWM--LNGTGLGASNHFEAG---GFIRTRDDDPWPNIQYHFLPVAIN 371
>sp|Q3JLL7|BETA_BURP1 Choline dehydrogenase OS=Burkholderia pseudomallei (strain 1710b)
GN=betA PE=3 SV=1
Length = 565
Score = 126 bits (316), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 149/287 (51%), Gaps = 29/287 (10%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-- 57
M Y RGN DY++W G W + LPYF K+E +D+ D +H G ++V+
Sbjct: 97 MCYIRGNALDYDNWATHKGLEDWAYLDCLPYFRKAET-RDVGPND--YHGGDGPVSVTTS 153
Query: 58 -PRLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPA 115
P ++P + + AG + D+N Q GFGP D T T G R ST++ +L+ A
Sbjct: 154 KPGVNP--LFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPRGRRASTARGYLDQA 211
Query: 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175
+ R NL I+ + +IL K +A GV +++ ++ ++ REV++ +GA+ SPQLL
Sbjct: 212 RARPNLEIVTHALADRILFSGK-RATGVTFLHGSARVT-AHARREVLVCSGAIASPQLLQ 269
Query: 176 LSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCF--------PGVLFSSNK---DPAITL 223
SG+G + L+E +I V+ DLP VG NLQDH+ P L+ + K P I L
Sbjct: 270 RSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKEPVSLYPALKWWNQPKIGL 329
Query: 224 HYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
++ L L + E GFI T+ + +PN++ + + +N
Sbjct: 330 EWM--LNGTGLGASNHFEAG---GFIRTRDDDPWPNIQYHFLPVAIN 371
>sp|B4EHJ2|BETA_BURCJ Choline dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=betA PE=3 SV=1
Length = 566
Score = 125 bits (315), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 148/290 (51%), Gaps = 35/290 (12%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-- 57
M Y RGN DY++W G W + LPYF K+E +D+ D +H G ++V+
Sbjct: 97 MCYIRGNALDYDNWSTHKGLENWTYLDCLPYFKKAET-RDVGPND--YHGGSGPVSVTTS 153
Query: 58 -PRLSPDETVKIIEA---AGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFL 112
P ++P + EA AG + D+N Q GFGP D T T G R ST++ +L
Sbjct: 154 KPGVNP-----LFEAMVDAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYL 208
Query: 113 EPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172
+ AK R NL I+ + +IL D K +A GV Y+ + ++ REV++ +GA+ SPQ
Sbjct: 209 DQAKARPNLEIVTHALADRILFDGK-RASGVTYLRGSERAT-AHARREVLVCSGAIASPQ 266
Query: 173 LLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCF--------PGVLFSSNK---DPA 220
LL SG+G LK +I V+ DLP VG+NLQDH+ P L+ + K P
Sbjct: 267 LLQRSGVGPGAWLKALDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 221 ITLHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
I L ++ L L + E GFI T+ + +PN++ + + +N
Sbjct: 327 IGLEWM--LNGTGLGASNHFEAG---GFIRTRDDDPWPNIQYHFLPVAIN 371
>sp|A6VEI3|BETA_PSEA7 Choline dehydrogenase OS=Pseudomonas aeruginosa (strain PA7)
GN=betA PE=3 SV=1
Length = 561
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 145/288 (50%), Gaps = 29/288 (10%)
Query: 1 MLYQRGNDRDYNDWERAGNPG---WGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS 57
M Y RGN D++ W A PG W + LPYF K+E +DI D +H G ++V+
Sbjct: 96 MCYIRGNALDFDGW--AKEPGLEDWSYLDCLPYFRKAET-RDIGPND--YHGGDGPVSVT 150
Query: 58 -PRLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPA 115
P+ + + AG + D+N Q GFGP D T T G R +T + +L+ A
Sbjct: 151 TPKAGNNPLFHAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRTVTPEGRRAATGRGYLDQA 210
Query: 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQG-KICHVNSTREVILSAGAVGSPQLL 174
+ R NL I+ + +IL K +A GV Y+ G ++ REV++ +GA+ SPQLL
Sbjct: 211 RGRPNLTIVTHALSDRILFSGK-RAIGVSYLVGNGDNPVTAHARREVLVCSGAIASPQLL 269
Query: 175 MLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCF--------PGVLFSSNK---DPAIT 222
SG+G L++ +I V+ DLP VG NLQDH+ P ++ + K PAI
Sbjct: 270 QRSGVGPAALLRDLDIPVVHDLPGVGANLQDHLELYLQYACKQPVSIYPATKWWNQPAIG 329
Query: 223 LHYLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN 270
+L +L KG+ + GFI T+ +PN++ + + +N
Sbjct: 330 AQWL-FLG----KGLGASNQFEAGGFIRTREAFEWPNIQFHFLPVAIN 372
>sp|B0V945|BETA_ACIBY Choline dehydrogenase OS=Acinetobacter baumannii (strain AYE)
GN=betA PE=3 SV=1
Length = 552
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 138/289 (47%), Gaps = 20/289 (6%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RGN D W G W + LPY+ K+E +DI D +H G ++V+ P
Sbjct: 97 MCYIRGNAMDLEQWATHKGLENWTYADCLPYYKKAET-RDIGGND--YHGDSGPVSVATP 153
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCSTSKAFLEPAKF 117
+ + + AG + D+N Q GFGP D T T G R ST++ +L+ AK
Sbjct: 154 KNGNNVLFHAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRSSTARGYLDMAKG 213
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEYI--NSQGKICHVNSTREVILSAGAVGSPQLLM 175
R NL IL + KIL + K +A GVEYI Q + REV+L AGA+ SPQ+L
Sbjct: 214 RPNLTILTHATTNKILFNQK-QAIGVEYIIGADQNNLQRALVKREVLLCAGAIASPQILQ 272
Query: 176 LSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAITLHYLRYLKVAAL 234
SG+G LK +I V+ DLP VGENLQDH+ L K P L++ A+
Sbjct: 273 RSGVGQSTFLKSMDIDVVHDLPGVGENLQDHLEM--YLQYKCKQPVSLYPALKWYNQPAI 330
Query: 235 --------KGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERN 275
GI + GFI + +PN++ + + +N N
Sbjct: 331 GAEWLFNGTGIGASNQFEAGGFIRSSDEFKWPNIQYHFLPVAINYNGSN 379
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 273,265,269
Number of Sequences: 539616
Number of extensions: 11609242
Number of successful extensions: 31159
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 30484
Number of HSP's gapped (non-prelim): 218
length of query: 749
length of database: 191,569,459
effective HSP length: 125
effective length of query: 624
effective length of database: 124,117,459
effective search space: 77449294416
effective search space used: 77449294416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)