Query psy3407
Match_columns 749
No_of_seqs 319 out of 1795
Neff 4.8
Searched_HMMs 46136
Date Sat Aug 17 00:13:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02106 choline dehydrogenase 100.0 6.4E-61 1.4E-65 544.6 33.8 382 1-405 97-501 (560)
2 TIGR01810 betA choline dehydro 100.0 3.4E-60 7.5E-65 535.4 34.8 383 1-405 91-496 (532)
3 KOG1238|consensus 100.0 5.7E-61 1.2E-65 541.0 27.5 389 1-404 149-581 (623)
4 COG2303 BetA Choline dehydroge 100.0 2E-53 4.4E-58 483.1 25.0 383 1-405 96-503 (542)
5 PLN02785 Protein HOTHEAD 100.0 3.7E-43 8.1E-48 402.6 27.4 344 1-405 140-546 (587)
6 PF00732 GMC_oxred_N: GMC oxid 100.0 7.3E-41 1.6E-45 348.0 8.8 203 1-206 89-295 (296)
7 TIGR02462 pyranose_ox pyranose 100.0 9.2E-38 2E-42 354.6 27.7 349 3-405 128-509 (544)
8 PF05199 GMC_oxred_C: GMC oxid 99.7 8.7E-17 1.9E-21 151.0 7.2 100 292-405 1-118 (144)
9 PRK12835 3-ketosteroid-delta-1 96.9 0.0023 4.9E-08 75.0 8.2 65 110-175 217-282 (584)
10 PRK12837 3-ketosteroid-delta-1 96.5 0.0084 1.8E-07 69.1 8.7 63 111-175 179-242 (513)
11 PRK07843 3-ketosteroid-delta-1 96.1 0.014 3.1E-07 67.9 8.2 63 112-176 214-276 (557)
12 PRK07121 hypothetical protein; 95.9 0.022 4.9E-07 65.0 8.5 58 112-170 183-240 (492)
13 PRK12844 3-ketosteroid-delta-1 95.9 0.022 4.8E-07 66.4 8.3 56 114-171 216-271 (557)
14 PRK08274 tricarballylate dehyd 95.5 0.035 7.6E-07 62.7 8.0 66 114-181 139-204 (466)
15 PRK05675 sdhA succinate dehydr 95.4 0.092 2E-06 61.6 11.2 54 116-170 136-190 (570)
16 PF00890 FAD_binding_2: FAD bi 95.4 0.033 7.1E-07 61.6 7.1 56 116-174 151-207 (417)
17 PRK06263 sdhA succinate dehydr 95.2 0.1 2.3E-06 60.6 10.7 58 112-170 140-198 (543)
18 TIGR01811 sdhA_Bsu succinate d 95.1 0.15 3.2E-06 60.4 11.5 52 118-170 145-197 (603)
19 PRK08958 sdhA succinate dehydr 94.9 0.17 3.7E-06 59.7 11.5 54 116-170 153-207 (588)
20 PRK12845 3-ketosteroid-delta-1 94.8 0.077 1.7E-06 62.3 8.1 55 116-172 227-281 (564)
21 PRK12839 hypothetical protein; 94.8 0.079 1.7E-06 62.3 8.2 54 116-170 224-277 (572)
22 PRK06134 putative FAD-binding 94.7 0.085 1.8E-06 61.9 8.2 59 114-174 225-283 (581)
23 PRK07573 sdhA succinate dehydr 94.7 0.19 4E-06 60.0 11.0 53 116-170 180-233 (640)
24 PRK06452 sdhA succinate dehydr 94.7 0.22 4.9E-06 58.3 11.5 52 116-169 146-198 (566)
25 TIGR01813 flavo_cyto_c flavocy 94.6 0.099 2.1E-06 58.6 8.1 59 111-170 135-193 (439)
26 PRK06175 L-aspartate oxidase; 94.3 0.11 2.4E-06 58.7 7.7 54 114-170 137-190 (433)
27 PRK12843 putative FAD-binding 94.0 0.14 3E-06 60.2 8.0 58 112-171 227-284 (578)
28 PRK09078 sdhA succinate dehydr 94.0 0.13 2.8E-06 60.8 7.8 54 116-170 159-213 (598)
29 TIGR01816 sdhA_forward succina 93.9 0.14 3.1E-06 60.0 7.6 57 112-170 125-182 (565)
30 PRK09231 fumarate reductase fl 93.7 0.48 1E-05 55.8 11.6 54 115-170 143-197 (582)
31 PTZ00139 Succinate dehydrogena 93.6 0.16 3.5E-06 60.2 7.5 54 116-170 176-230 (617)
32 PRK08275 putative oxidoreducta 93.2 0.21 4.5E-06 58.4 7.5 58 111-169 142-200 (554)
33 COG0029 NadB Aspartate oxidase 93.1 0.29 6.4E-06 56.5 8.2 101 68-169 91-196 (518)
34 PLN02815 L-aspartate oxidase 93.1 0.2 4.4E-06 59.2 7.3 54 115-169 165-222 (594)
35 PLN00128 Succinate dehydrogena 93.0 0.23 5E-06 59.2 7.6 53 117-170 198-251 (635)
36 PF15410 PH_9: Pleckstrin homo 92.9 0.14 3E-06 48.2 4.6 72 562-636 23-114 (119)
37 TIGR01176 fum_red_Fp fumarate 92.8 0.62 1.4E-05 55.0 10.7 53 116-170 143-196 (580)
38 TIGR01812 sdhA_frdA_Gneg succi 92.8 0.58 1.3E-05 54.6 10.4 53 116-170 139-192 (566)
39 PF01266 DAO: FAD dependent ox 92.8 0.14 3E-06 53.9 4.8 56 116-179 157-212 (358)
40 PRK08071 L-aspartate oxidase; 92.8 0.6 1.3E-05 54.1 10.3 50 119-170 142-191 (510)
41 PRK05945 sdhA succinate dehydr 92.7 0.67 1.5E-05 54.4 10.9 55 114-170 143-198 (575)
42 PRK12842 putative succinate de 92.7 0.33 7.2E-06 56.9 8.2 56 115-172 223-278 (574)
43 PRK08641 sdhA succinate dehydr 92.7 0.78 1.7E-05 54.2 11.3 51 119-170 150-201 (589)
44 cd01246 PH_oxysterol_bp Oxyste 92.7 0.59 1.3E-05 40.3 7.8 80 553-636 3-88 (91)
45 PRK09077 L-aspartate oxidase; 92.6 0.3 6.6E-06 56.8 7.8 55 115-170 148-208 (536)
46 PRK07395 L-aspartate oxidase; 92.5 0.2 4.3E-06 58.8 6.1 53 116-170 145-198 (553)
47 PF00169 PH: PH domain; Inter 92.5 0.19 4E-06 43.2 4.5 86 552-638 4-101 (104)
48 cd01260 PH_CNK Connector enhan 92.2 0.63 1.4E-05 41.5 7.7 72 564-636 19-93 (96)
49 PRK08626 fumarate reductase fl 92.1 0.3 6.6E-06 58.4 7.1 53 116-170 168-221 (657)
50 PRK06481 fumarate reductase fl 92.0 0.42 9E-06 55.2 7.9 55 116-172 200-254 (506)
51 TIGR00551 nadB L-aspartate oxi 91.9 0.95 2E-05 52.0 10.6 51 117-170 140-190 (488)
52 cd01233 Unc104 Unc-104 pleckst 91.8 0.5 1.1E-05 42.9 6.6 90 549-639 2-97 (100)
53 PRK07057 sdhA succinate dehydr 91.7 0.43 9.4E-06 56.3 7.6 53 117-170 159-212 (591)
54 PRK07512 L-aspartate oxidase; 91.3 0.34 7.3E-06 56.2 6.1 53 115-170 146-198 (513)
55 KOG2404|consensus 91.2 0.22 4.7E-06 55.1 4.1 52 117-170 155-207 (477)
56 PRK08205 sdhA succinate dehydr 91.1 0.58 1.2E-05 55.1 7.9 58 112-170 146-207 (583)
57 PRK07803 sdhA succinate dehydr 91.1 0.53 1.1E-05 56.0 7.6 50 120-171 165-215 (626)
58 PTZ00306 NADH-dependent fumara 91.1 0.5 1.1E-05 60.2 7.7 53 118-171 559-622 (1167)
59 PRK13977 myosin-cross-reactive 91.1 0.55 1.2E-05 55.5 7.6 68 102-169 219-293 (576)
60 PRK12834 putative FAD-binding 90.6 0.54 1.2E-05 54.8 7.0 55 118-174 164-233 (549)
61 PRK06854 adenylylsulfate reduc 90.2 0.74 1.6E-05 54.6 7.7 53 115-169 142-195 (608)
62 PRK13800 putative oxidoreducta 90.0 1.5 3.3E-05 54.4 10.4 49 119-169 156-205 (897)
63 PRK06069 sdhA succinate dehydr 89.9 0.76 1.6E-05 54.0 7.5 53 116-170 148-201 (577)
64 TIGR03377 glycerol3P_GlpA glyc 89.8 1 2.3E-05 51.9 8.4 61 116-179 138-199 (516)
65 cd01230 PH_EFA6 EFA6 Pleckstri 89.3 1.1 2.4E-05 42.6 6.6 75 562-637 23-108 (117)
66 PF13738 Pyr_redox_3: Pyridine 88.6 0.59 1.3E-05 46.0 4.6 62 110-178 86-147 (203)
67 PLN02464 glycerol-3-phosphate 88.6 0.99 2.1E-05 53.8 7.3 61 116-178 242-304 (627)
68 TIGR02485 CobZ_N-term precorri 88.1 1.2 2.6E-05 50.1 7.2 58 114-175 131-189 (432)
69 TIGR02061 aprA adenosine phosp 88.0 1.2 2.6E-05 53.2 7.3 51 118-169 138-191 (614)
70 PRK07804 L-aspartate oxidase; 87.4 1.3 2.7E-05 51.9 7.0 56 114-170 152-211 (541)
71 smart00233 PH Pleckstrin homol 87.4 2 4.3E-05 35.9 6.5 87 551-638 3-99 (102)
72 cd00900 PH-like Pleckstrin hom 87.2 3.7 7.9E-05 34.3 8.0 84 552-636 2-96 (99)
73 PRK11101 glpA sn-glycerol-3-ph 87.1 1.3 2.9E-05 51.7 7.0 60 117-179 160-220 (546)
74 PRK05257 malate:quinone oxidor 86.7 2.6 5.6E-05 49.0 8.9 67 111-180 189-256 (494)
75 COG0579 Predicted dehydrogenas 85.6 3.3 7.1E-05 47.6 8.8 68 109-184 157-225 (429)
76 cd01263 PH_anillin Anillin Ple 85.5 2 4.2E-05 41.3 6.0 76 560-636 14-119 (122)
77 cd01250 PH_centaurin Centaurin 85.0 5.6 0.00012 34.4 8.3 73 562-636 13-91 (94)
78 COG0578 GlpA Glycerol-3-phosph 84.9 1.3 2.8E-05 52.0 5.4 61 117-181 175-236 (532)
79 TIGR03378 glycerol3P_GlpB glyc 84.8 2 4.2E-05 49.2 6.6 69 102-177 262-330 (419)
80 cd00821 PH Pleckstrin homology 84.0 3.8 8.2E-05 33.8 6.5 84 553-637 3-94 (96)
81 PF06039 Mqo: Malate:quinone o 83.7 3.4 7.3E-05 48.0 7.8 68 111-181 187-255 (488)
82 cd01253 PH_beta_spectrin Beta- 83.5 5.8 0.00013 35.8 8.0 75 562-636 20-101 (104)
83 COG1053 SdhA Succinate dehydro 83.2 2.2 4.8E-05 50.5 6.4 132 71-208 99-241 (562)
84 PF12831 FAD_oxidored: FAD dep 81.7 0.45 9.7E-06 53.8 0.0 63 111-179 95-157 (428)
85 PRK05329 anaerobic glycerol-3- 81.4 3.4 7.4E-05 47.2 6.9 59 111-173 264-322 (422)
86 PRK04176 ribulose-1,5-biphosph 80.0 3.5 7.6E-05 43.8 6.0 51 116-167 114-171 (257)
87 PF01134 GIDA: Glucose inhibit 79.9 4.4 9.6E-05 46.0 7.0 51 115-172 105-155 (392)
88 TIGR01320 mal_quin_oxido malat 79.6 5.9 0.00013 45.9 8.1 61 117-180 189-250 (483)
89 TIGR02733 desat_CrtD C-3',4' d 79.4 2.8 6.1E-05 47.8 5.4 57 116-174 242-299 (492)
90 KOG0042|consensus 79.2 1.1 2.4E-05 52.5 2.0 68 98-169 219-287 (680)
91 PTZ00383 malate:quinone oxidor 78.9 5.9 0.00013 46.2 7.8 53 121-181 232-284 (497)
92 TIGR02731 phytoene_desat phyto 78.7 3.3 7E-05 46.7 5.5 49 118-167 225-274 (453)
93 PRK13339 malate:quinone oxidor 78.6 8.2 0.00018 45.2 8.8 69 110-181 189-258 (497)
94 PLN02661 Putative thiazole syn 75.8 5.9 0.00013 44.5 6.4 55 111-167 178-242 (357)
95 TIGR02730 carot_isom carotene 75.6 4.1 8.9E-05 46.7 5.3 56 114-175 237-292 (493)
96 PRK06185 hypothetical protein; 75.2 8.7 0.00019 42.4 7.6 60 116-180 119-178 (407)
97 PRK07208 hypothetical protein; 74.1 5.9 0.00013 44.9 6.0 56 117-173 229-284 (479)
98 TIGR03862 flavo_PP4765 unchara 74.1 12 0.00025 42.5 8.2 89 67-173 57-145 (376)
99 cd01241 PH_Akt Akt pleckstrin 74.1 14 0.0003 33.8 7.4 73 561-636 13-98 (102)
100 TIGR02352 thiamin_ThiO glycine 72.7 5.5 0.00012 42.2 5.1 46 116-168 147-192 (337)
101 TIGR01373 soxB sarcosine oxida 72.7 8.4 0.00018 42.6 6.7 57 115-178 192-248 (407)
102 COG2081 Predicted flavoprotein 72.1 13 0.00027 42.6 7.9 90 67-173 82-171 (408)
103 cd01265 PH_PARIS-1 PARIS-1 ple 72.1 19 0.00042 32.4 7.8 30 606-636 61-90 (95)
104 PRK08401 L-aspartate oxidase; 71.0 26 0.00056 40.2 10.3 51 112-170 126-176 (466)
105 TIGR02734 crtI_fam phytoene de 69.5 4.8 0.0001 46.0 4.0 54 116-175 229-282 (502)
106 PF03486 HI0933_like: HI0933-l 68.5 7.9 0.00017 44.1 5.4 91 67-173 80-170 (409)
107 PRK00711 D-amino acid dehydrog 68.2 13 0.00027 41.2 6.8 53 115-175 210-262 (416)
108 PRK12266 glpD glycerol-3-phosp 68.1 13 0.00027 43.3 7.1 56 116-175 165-221 (508)
109 PRK13369 glycerol-3-phosphate 67.8 13 0.00029 42.9 7.2 56 116-175 165-220 (502)
110 PLN02985 squalene monooxygenas 66.2 17 0.00037 42.5 7.7 52 115-169 157-208 (514)
111 cd01257 PH_IRS Insulin recepto 65.0 13 0.00029 34.4 5.2 49 588-637 51-99 (101)
112 KOG4254|consensus 62.0 6.3 0.00014 45.7 3.0 65 100-171 259-323 (561)
113 PRK10157 putative oxidoreducta 62.0 19 0.00041 40.8 6.8 63 108-179 110-172 (428)
114 PRK11728 hydroxyglutarate oxid 61.9 26 0.00055 38.9 7.8 56 116-180 159-214 (393)
115 TIGR02732 zeta_caro_desat caro 61.7 12 0.00026 43.1 5.3 57 116-174 229-289 (474)
116 COG1233 Phytoene dehydrogenase 61.4 10 0.00022 43.9 4.7 56 114-176 232-287 (487)
117 cd01264 PH_melted Melted pleck 61.0 22 0.00049 33.1 6.0 73 565-638 19-99 (101)
118 cd01252 PH_cytohesin Cytohesin 60.0 42 0.00092 31.5 7.8 23 563-585 14-36 (125)
119 PF13434 K_oxygenase: L-lysine 59.3 13 0.00028 41.2 4.9 61 110-173 99-161 (341)
120 cd01231 PH_Lnk LNK-family Plec 59.1 15 0.00033 34.6 4.4 56 581-636 43-104 (107)
121 cd01266 PH_Gab Gab (Grb2-assoc 59.1 24 0.00053 32.4 5.9 31 605-636 74-104 (108)
122 TIGR00136 gidA glucose-inhibit 57.6 41 0.00089 40.6 8.8 54 116-175 107-160 (617)
123 TIGR01292 TRX_reduct thioredox 57.4 45 0.00099 34.5 8.3 58 117-177 188-246 (300)
124 PRK06126 hypothetical protein; 55.4 36 0.00079 39.5 7.9 50 116-168 137-187 (545)
125 PRK15317 alkyl hydroperoxide r 55.2 48 0.001 38.6 8.8 59 117-177 398-457 (517)
126 TIGR00292 thiazole biosynthesi 54.0 25 0.00054 37.4 5.8 65 111-176 105-178 (254)
127 PLN02172 flavin-containing mon 53.7 25 0.00055 40.6 6.2 69 108-179 113-183 (461)
128 cd01247 PH_GPBP Goodpasture an 52.2 87 0.0019 28.2 8.1 81 553-636 3-88 (91)
129 COG0644 FixC Dehydrogenases (f 51.9 24 0.00052 39.4 5.5 52 110-167 99-150 (396)
130 PRK05192 tRNA uridine 5-carbox 51.7 25 0.00055 42.4 5.9 46 116-168 111-156 (618)
131 COG3634 AhpF Alkyl hydroperoxi 51.1 42 0.00092 38.2 7.0 60 116-177 400-460 (520)
132 PRK12409 D-amino acid dehydrog 50.9 32 0.0007 38.1 6.3 59 114-176 205-264 (410)
133 PRK10015 oxidoreductase; Provi 50.9 28 0.0006 39.6 5.9 52 109-167 111-162 (429)
134 cd01251 PH_centaurin_alpha Cen 50.7 27 0.00058 32.1 4.7 31 606-637 67-97 (103)
135 TIGR01377 soxA_mon sarcosine o 49.3 42 0.00092 36.4 6.8 55 115-178 154-208 (380)
136 KOG2852|consensus 48.4 30 0.00066 38.4 5.3 64 112-179 154-217 (380)
137 PLN02487 zeta-carotene desatur 48.3 22 0.00048 42.4 4.7 56 117-174 306-365 (569)
138 TIGR03197 MnmC_Cterm tRNA U-34 48.1 43 0.00092 36.9 6.6 46 115-168 144-189 (381)
139 PRK07364 2-octaprenyl-6-methox 47.7 46 0.001 36.7 6.9 50 115-168 131-180 (415)
140 PTZ00267 NIMA-related protein 47.5 25 0.00054 40.2 4.8 83 557-639 384-475 (478)
141 PRK07233 hypothetical protein; 46.0 24 0.00053 38.8 4.3 51 117-174 209-259 (434)
142 PRK12831 putative oxidoreducta 45.5 53 0.0011 37.9 7.1 57 117-174 329-401 (464)
143 TIGR03140 AhpF alkyl hydropero 44.9 85 0.0018 36.6 8.7 56 118-175 400-456 (515)
144 PLN02612 phytoene desaturase 43.2 30 0.00065 41.0 4.7 44 118-166 320-363 (567)
145 PF01494 FAD_binding_3: FAD bi 42.3 56 0.0012 34.3 6.2 57 109-167 114-170 (356)
146 PRK11259 solA N-methyltryptoph 42.0 54 0.0012 35.6 6.2 50 116-174 159-208 (376)
147 PRK12810 gltD glutamate syntha 41.8 50 0.0011 38.0 6.1 61 117-179 340-411 (471)
148 TIGR01316 gltA glutamate synth 41.6 70 0.0015 36.6 7.3 53 116-169 319-387 (449)
149 COG3573 Predicted oxidoreducta 41.6 56 0.0012 37.1 6.1 61 115-177 162-236 (552)
150 KOG1298|consensus 40.8 27 0.00057 40.2 3.6 51 115-168 157-207 (509)
151 TIGR03364 HpnW_proposed FAD de 40.2 57 0.0012 35.4 6.0 44 117-173 157-200 (365)
152 PRK06183 mhpA 3-(3-hydroxyphen 39.9 83 0.0018 36.7 7.6 52 117-171 125-176 (538)
153 PRK10262 thioredoxin reductase 39.5 1.2E+02 0.0026 32.5 8.3 62 115-179 194-257 (321)
154 PRK06327 dihydrolipoamide dehy 38.7 70 0.0015 36.7 6.7 58 114-174 232-289 (475)
155 TIGR01318 gltD_gamma_fam gluta 37.5 63 0.0014 37.2 6.1 62 117-179 331-409 (467)
156 COG0445 GidA Flavin-dependent 37.1 18 0.00039 43.1 1.6 52 116-173 111-162 (621)
157 PRK12769 putative oxidoreducta 36.8 66 0.0014 38.7 6.3 52 117-169 517-584 (654)
158 PRK08244 hypothetical protein; 35.8 92 0.002 35.8 7.1 55 110-168 104-158 (493)
159 TIGR02032 GG-red-SF geranylger 34.5 1E+02 0.0022 31.7 6.6 52 111-168 96-147 (295)
160 TIGR02028 ChlP geranylgeranyl 34.4 91 0.002 35.0 6.6 59 108-168 95-159 (398)
161 PRK07818 dihydrolipoamide dehy 34.1 1.1E+02 0.0024 34.9 7.4 59 112-173 219-277 (466)
162 PRK12809 putative oxidoreducta 33.4 79 0.0017 38.0 6.2 51 118-169 501-567 (639)
163 cd01219 PH_FGD FGD (faciogenit 32.3 2.2E+02 0.0048 25.9 7.7 82 550-637 3-96 (101)
164 PRK07045 putative monooxygenas 32.1 1.1E+02 0.0025 33.5 6.8 48 116-168 117-164 (388)
165 PTZ00363 rab-GDP dissociation 31.4 89 0.0019 36.2 6.0 47 117-168 243-289 (443)
166 TIGR01984 UbiH 2-polyprenyl-6- 30.3 1.3E+02 0.0029 32.7 6.9 43 118-167 118-160 (382)
167 PRK09564 coenzyme A disulfide 30.0 1.3E+02 0.0028 33.9 6.9 60 112-179 197-256 (444)
168 TIGR01350 lipoamide_DH dihydro 29.6 1.2E+02 0.0025 34.4 6.5 54 114-172 219-272 (461)
169 TIGR01372 soxA sarcosine oxida 28.8 1.5E+02 0.0033 37.7 7.8 61 116-179 361-421 (985)
170 TIGR02053 MerA mercuric reduct 28.2 1.3E+02 0.0028 34.3 6.6 57 111-171 212-268 (463)
171 PRK08243 4-hydroxybenzoate 3-m 28.2 1.4E+02 0.0031 33.0 6.8 48 117-167 114-161 (392)
172 cd01235 PH_SETbf Set binding f 28.1 2.7E+02 0.0058 24.5 7.3 32 604-636 66-97 (101)
173 PRK05976 dihydrolipoamide dehy 27.8 1.4E+02 0.0031 34.1 6.8 58 112-172 227-284 (472)
174 TIGR01988 Ubi-OHases Ubiquinon 27.0 1.6E+02 0.0036 31.8 6.9 52 109-167 110-161 (385)
175 PF08799 PRP4: pre-mRNA proces 26.5 35 0.00076 25.4 1.1 16 409-424 1-16 (30)
176 PF01593 Amino_oxidase: Flavin 26.5 89 0.0019 33.3 4.6 40 120-166 223-262 (450)
177 PF00070 Pyr_redox: Pyridine n 25.7 95 0.0021 26.5 3.8 35 111-147 45-79 (80)
178 COG0654 UbiH 2-polyprenyl-6-me 25.5 1.5E+02 0.0034 32.8 6.4 49 115-170 114-162 (387)
179 PRK08163 salicylate hydroxylas 25.5 1.5E+02 0.0031 32.6 6.2 54 111-171 115-168 (396)
180 PRK11445 putative oxidoreducta 25.1 2E+02 0.0042 31.6 7.1 56 110-170 103-158 (351)
181 cd01238 PH_Tec Tec pleckstrin 25.0 2.4E+02 0.0053 25.9 6.6 31 605-636 73-103 (106)
182 COG3075 GlpB Anaerobic glycero 25.0 59 0.0013 36.8 3.0 55 112-170 264-318 (421)
183 TIGR00275 flavoprotein, HI0933 24.7 1.4E+02 0.003 33.7 5.9 54 111-172 110-163 (400)
184 TIGR02023 BchP-ChlP geranylger 24.3 1.8E+02 0.0039 32.2 6.7 56 108-167 94-153 (388)
185 TIGR03329 Phn_aa_oxid putative 24.2 1.3E+02 0.0028 34.4 5.6 45 115-168 192-236 (460)
186 PRK04965 NADH:flavorubredoxin 23.7 1.9E+02 0.0041 31.9 6.6 63 111-180 188-250 (377)
187 cd01220 PH_CDEP Chondrocyte-de 23.4 4.1E+02 0.009 24.4 7.7 35 604-639 62-96 (99)
188 PRK11749 dihydropyrimidine deh 23.3 1.8E+02 0.0038 33.3 6.5 57 116-174 321-392 (457)
189 PRK12771 putative glutamate sy 23.3 1.7E+02 0.0037 34.5 6.5 60 118-179 317-391 (564)
190 COG3486 IucD Lysine/ornithine 23.1 2E+02 0.0044 33.4 6.7 55 118-174 290-346 (436)
191 PRK06115 dihydrolipoamide dehy 22.9 1.8E+02 0.0039 33.3 6.5 60 111-173 220-280 (466)
192 PF04820 Trp_halogenase: Trypt 22.7 1E+02 0.0022 35.6 4.4 54 107-166 155-208 (454)
193 cd01240 PH_beta-ARK Beta adren 22.4 72 0.0016 30.7 2.6 45 635-683 64-108 (116)
194 smart00500 SFM Splicing Factor 22.3 59 0.0013 26.2 1.7 19 406-424 3-21 (44)
195 PRK06416 dihydrolipoamide dehy 22.1 2.4E+02 0.0051 32.1 7.2 58 112-173 219-276 (462)
196 cd01254 PH_PLD Phospholipase D 21.7 3.8E+02 0.0083 25.3 7.4 30 606-636 89-118 (121)
197 PRK06370 mercuric reductase; V 21.2 2.6E+02 0.0056 31.9 7.3 58 111-172 217-274 (463)
198 PF13434 K_oxygenase: L-lysine 21.2 2.1E+02 0.0045 31.9 6.3 48 117-166 290-338 (341)
199 TIGR03467 HpnE squalene-associ 21.1 87 0.0019 34.2 3.4 44 118-167 209-252 (419)
200 PRK14989 nitrite reductase sub 21.1 1.8E+02 0.004 36.5 6.4 64 111-179 192-255 (847)
201 PRK07190 hypothetical protein; 21.0 2.1E+02 0.0046 33.3 6.6 51 110-167 113-163 (487)
202 PRK08773 2-octaprenyl-3-methyl 20.8 2.2E+02 0.0047 31.4 6.4 55 116-179 123-177 (392)
203 COG2072 TrkA Predicted flavopr 20.7 1.8E+02 0.0039 33.5 5.9 67 109-178 85-153 (443)
204 PRK12775 putative trifunctiona 20.7 2.3E+02 0.0051 36.3 7.3 57 117-174 620-691 (1006)
No 1
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=6.4e-61 Score=544.65 Aligned_cols=382 Identities=28% Similarity=0.438 Sum_probs=298.7
Q ss_pred CEEEcCChhhhHHHHHc-CCCCCCccchHHHHHHhhcCCCCCCCCCCCCCCCCCcccCCC-CCCChHHHHHHHHHHHcCC
Q psy3407 1 MLYQRGNDRDYNDWERA-GNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPR-LSPDETVKIIEAAGKELKI 78 (749)
Q Consensus 1 Miy~RGsp~DFD~Wa~l-G~~GWSYddLePYY~KaE~~~~gvsg~~~~hG~~GPl~V~~P-~~~~p~~~~f~~A~~eLG~ 78 (749)
|+|.|+++.|||.|+++ |++||+|++|+|||+|+|++ .. +..++||..||++++.+ .+.++..+.|.++++++|+
T Consensus 97 ~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~-~~--~~~~~~g~~gp~~~~~~~~~~~~~~~~~~~a~~~lG~ 173 (560)
T PRK02106 97 MVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETR-DG--GEDDYRGGDGPLSVTRGKPGTNPLFQAFVEAGVQAGY 173 (560)
T ss_pred eEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhcc-CC--CCccccCCCCCEEEeCCCCCCCHHHHHHHHHHHHcCC
Confidence 78999999999999987 88999999999999999998 52 23456888999998876 5678999999999999999
Q ss_pred CCCCCCCCCCCccccccccccCCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEec
Q psy3407 79 GTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNST 158 (749)
Q Consensus 79 ~~~~D~N~g~~~G~~~c~~~c~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~Ar 158 (749)
+...+.|++...|++.|..+|+.|+|+++..+||+++.+++|++|++++.|+||+++ +++|+||+|.+.+++ .++.++
T Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~~~-~~~~~a 251 (560)
T PRK02106 174 PRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE-GKRAVGVEYERGGGR-ETARAR 251 (560)
T ss_pred CcCCCCCCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCCcE-EEEEee
Confidence 999899988888998888899999999999999999888999999999999999998 679999999984444 444455
Q ss_pred cEEEEccCCCCChHHHhhcCCCccccccccCcceeecCC-CCCCcccccccceEEEEeCCCCccccch---H--HHH-H-
Q psy3407 159 REVILSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAITLHY---L--RYL-K- 230 (749)
Q Consensus 159 KeVILAAGAIeTPrLLL~SGIGpas~L~~~GIpvVaDLP-VGRNLqDHp~v~~v~~~~~e~~~~~~~~---~--~l~-~- 230 (749)
|+||||||||+||+|||+|||||+++|+++||++++|+| ||||||||+.+. +.+.++++....... . ... .
T Consensus 252 k~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (560)
T PRK02106 252 REVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVY-IQYECKQPVSLYPALKWWNKPKIGAEW 330 (560)
T ss_pred eeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccce-EEEEeCCCcccccccchhhhhHHHHHH
Confidence 999999999999999999999999999999999999999 999999999987 788877654321100 0 011 1
Q ss_pred HhhccC-ccccccceEEEEEecCCCCCCCceeeeeccccCCccccccccccccceeeeeeeccCCCCeEEecCCCCCCCc
Q psy3407 231 VAALKG-ISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGKSVMGSLFGQEVLVDDNDKDVIASPTNLTAKV 309 (749)
Q Consensus 231 ~~~r~G-~ts~~~~e~~~f~~s~~~~~~Pdiq~~f~p~~~g~d~~~~~~~~~g~~i~i~l~lP~srGrVtL~skDp~G~P 309 (749)
...+.| ++ ....+..+|.+.......|++++.+.+..+....... ....++.+...+++|.++|+|+|+++||++.|
T Consensus 331 ~~~~~g~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~srG~V~L~s~d~~~~P 408 (560)
T PRK02106 331 LFTGTGLGA-SNHFEAGGFIRSRAGVDWPNIQYHFLPVAIRYDGSNA-VKGHGFQAHVGPMRSPSRGSVKLKSADPRAHP 408 (560)
T ss_pred HhcCCCCcc-ccccceeeEEecCCCCCCCCeEEEEeeccccccCCCC-CCCCeEEEEEEecCCcceEEEEEeCCCCccCc
Confidence 233455 43 2233445666654323457777665543322111111 11123444556789999999999999999999
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHHHHHHHHHHHh-cCCCCcccccCCCC---CCcc--------cCCCCCCccccccC
Q psy3407 310 QTIFESFTKMSETNININKKQFMSNMDKVFETIKTK-FEPFAEGEIPIESR---SSYW--------NNNSDGTSKEACEM 377 (749)
Q Consensus 310 vI~i~Y~s~~~~p~~~~D~a~L~egir~arrIL~AA-ga~~~~~eis~~s~---~~~~--------~~~~~Gt~mGTcRM 377 (749)
.++++|+.+ | +|+++++++++.++++++++ +.++.+.++.+... .+.| .... |.+|||||
T Consensus 409 ~i~~~y~~~---~---~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~--H~~GTcrM 480 (560)
T PRK02106 409 SILFNYMST---E---QDWREFRDAIRLTREIMAQPALDPYRGREISPGADVQTDEEIDAFVREHAETAY--HPSCTCKM 480 (560)
T ss_pred eEccccCCC---H---HHHHHHHHHHHHHHHHHcChhhhhccccccCCCcccCCHHHHHHHHHhccCcCc--ccCCCeec
Confidence 999999999 7 99999999999999999874 33333333322110 0001 1223 49999999
Q ss_pred CCCCCCCCCCCCCccCCCCCccCCCCcc
Q psy3407 378 GKLGSSTPIKKHSVITSNNNSLNLENIL 405 (749)
Q Consensus 378 G~D~~~~p~PktSVVD~~grsHD~~NL~ 405 (749)
|+| | +||||++||+|+++|||
T Consensus 481 G~d------~-~sVVD~~~rV~Gv~nLr 501 (560)
T PRK02106 481 GTD------P-MAVVDPEGRVHGVEGLR 501 (560)
T ss_pred CCC------C-CeeECCCCEEeccCCeE
Confidence 997 7 89999999999999998
No 2
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=3.4e-60 Score=535.35 Aligned_cols=383 Identities=27% Similarity=0.422 Sum_probs=300.0
Q ss_pred CEEEcCChhhhHHHHH-cCCCCCCccchHHHHHHhhcCCCCCCCCCCCCCCCCCcccCCCCCCChHHHHHHHHHHHcCCC
Q psy3407 1 MLYQRGNDRDYNDWER-AGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRLSPDETVKIIEAAGKELKIG 79 (749)
Q Consensus 1 Miy~RGsp~DFD~Wa~-lG~~GWSYddLePYY~KaE~~~~gvsg~~~~hG~~GPl~V~~P~~~~p~~~~f~~A~~eLG~~ 79 (749)
|+|+|+++.|||.|++ .|+++|+|++|+|||+|+|++ .+.. .++||..||+.+.++++..+..+.|.++++++|++
T Consensus 91 ~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~-~~~~--~~~~g~~G~~~v~~~~~~~~~~~~~~~a~~~~G~~ 167 (532)
T TIGR01810 91 MIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETT-FGGE--KPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYN 167 (532)
T ss_pred eEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc-CCCC--cccCCCCCCEEEecCCCCCHHHHHHHHHHHHcCCC
Confidence 7899999999999998 688999999999999999998 6532 35789999999988877889999999999999999
Q ss_pred CCCCCCCCCCccccccccccCCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEecc
Q psy3407 80 TMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTR 159 (749)
Q Consensus 80 ~~~D~N~g~~~G~~~c~~~c~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArK 159 (749)
..+++|++...|++.|..+|++|+|+|+..+||+++++|+|++|+++++|+||+++ ++||+||+|.+ .|...++.++|
T Consensus 168 ~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~-~~~~~~~~~ak 245 (532)
T TIGR01810 168 KTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKK-GGRKEHTEANK 245 (532)
T ss_pred ccCCCCCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEe-CCcEEEEEEee
Confidence 99999988888998888889999999999999999888999999999999999998 68999999987 45445565669
Q ss_pred EEEEccCCCCChHHHhhcCCCccccccccCcceeecCC-CCCCcccccccceEEEEeCCCCcccc-----chHHH-HH-H
Q psy3407 160 EVILSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAITL-----HYLRY-LK-V 231 (749)
Q Consensus 160 eVILAAGAIeTPrLLL~SGIGpas~L~~~GIpvVaDLP-VGRNLqDHp~v~~v~~~~~e~~~~~~-----~~~~l-~~-~ 231 (749)
+||||||||+||+|||+|||||+++|+++||++++|+| ||||||||+.+. +.+.++++..... ..... .. .
T Consensus 246 ~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (532)
T TIGR01810 246 EVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVY-VQHACKQPVSLYPSLNWLKQPFIGAQWL 324 (532)
T ss_pred eEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccce-eEEEecCCcccccccchhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999 999999999987 7888776533210 00000 01 2
Q ss_pred hhccC-ccccccceEEEEEecCCCCCCCceeeeeccccCCccccccccccccceeeeeeeccCCCCeEEecCCCCCCCce
Q psy3407 232 AALKG-ISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGKSVMGSLFGQEVLVDDNDKDVIASPTNLTAKVQ 310 (749)
Q Consensus 232 ~~r~G-~ts~~~~e~~~f~~s~~~~~~Pdiq~~f~p~~~g~d~~~~~~~~~g~~i~i~l~lP~srGrVtL~skDp~G~Pv 310 (749)
..+.| +. ....+..+|.+.......|++++.+.+.......... ....++.+...+++|.++|+|+|+++||++.|.
T Consensus 325 ~~~~g~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~ 402 (532)
T TIGR01810 325 FGRKGAGA-SNHFEGGGFVRSNDDVDYPNIQYHFLPVAIRYDGTKA-PKAHGFQVHVGPMYSNSRGHVKIKSKDPFEKPE 402 (532)
T ss_pred hcCCCCcc-ccccceeEEEecCCCCCCCCeEEEEEeeeeccCCCCC-CCCCcEEEEEeecCCCCceEEEecCCCCccCce
Confidence 23445 33 2333445666554333467777766543221111111 112234445567899999999999999999999
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHHHHHHHHHHH-hcCCCCcccccCCCC---C----Ccc----cCCCCCCccccccCC
Q psy3407 311 TIFESFTKMSETNININKKQFMSNMDKVFETIKT-KFEPFAEGEIPIESR---S----SYW----NNNSDGTSKEACEMG 378 (749)
Q Consensus 311 I~i~Y~s~~~~p~~~~D~a~L~egir~arrIL~A-Aga~~~~~eis~~s~---~----~~~----~~~~~Gt~mGTcRMG 378 (749)
++++|+.+ | +|++.++++++.+++++++ ++..+...+..+... . .++ ... .|.+||||||
T Consensus 403 i~~~y~~~---~---~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~d~~~~~~ir~~~~~~--~H~~GTcrMG 474 (532)
T TIGR01810 403 IVFNYMSH---E---EDWREFREAIRVTREILKQKALDPYRGGEISPGPEVQTDEEIDEFVRRHGETA--LHPCGTCKMG 474 (532)
T ss_pred eccccCCC---H---HHHHHHHHHHHHHHHHHcCcchhhccccccCCCCCCCCHHHHHHHHhhhcccc--cccccceeCC
Confidence 99999999 8 9999999999999999987 443433333222110 0 001 122 3499999999
Q ss_pred C-CCCCCCCCCCCccCCCCCccCCCCcc
Q psy3407 379 K-LGSSTPIKKHSVITSNNNSLNLENIL 405 (749)
Q Consensus 379 ~-D~~~~p~PktSVVD~~grsHD~~NL~ 405 (749)
. | |++||||++||.|+++|||
T Consensus 475 ~~~------~~~~VVD~~~rV~Gv~nLr 496 (532)
T TIGR01810 475 PAS------DEMSVVDPETRVHGMEGLR 496 (532)
T ss_pred Ccc------cCCCccCCCCeEeccCCcE
Confidence 8 5 6899999999999999998
No 3
>KOG1238|consensus
Probab=100.00 E-value=5.7e-61 Score=541.03 Aligned_cols=389 Identities=30% Similarity=0.494 Sum_probs=319.1
Q ss_pred CEEEcCChhhhHHHHHcCCCCCCccchHHHHHHhhcCCCCCCCC-CCCCCCCCCcccCCCCCCChHHHHHHHHHHHcCCC
Q psy3407 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQD-AAFHNTGGYLTVSPRLSPDETVKIIEAAGKELKIG 79 (749)
Q Consensus 1 Miy~RGsp~DFD~Wa~lG~~GWSYddLePYY~KaE~~~~gvsg~-~~~hG~~GPl~V~~P~~~~p~~~~f~~A~~eLG~~ 79 (749)
|+|+||++.|||+|++.|++||+|++++|||+|+|+. .-+... .++||..||..+++-.+.+++..+|.++.+++|.+
T Consensus 149 m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~-~~~~~~~~~y~~~~g~~~ve~~~~~~~~~~~~~~ag~e~G~~ 227 (623)
T KOG1238|consen 149 MFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDK-VVPDPELTPYHGAGGPLLVEAGVYPNNLFTAFHRAGTEIGGS 227 (623)
T ss_pred eEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhc-cCCCcccCcccccCCcceeccccccCchhhHhHHhHHhcCCC
Confidence 8999999999999999999999999999999999998 433333 56899999999998888999999999999999954
Q ss_pred CCCCCCCCCCccccccccccCCCcccchhhhhhhhhcc-CCCeEEEcccEEEEEEeC-CCCcEEEEEEEecCCeEEEEEe
Q psy3407 80 TMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKF-RENLIILKNTEVIKILID-SKLKAYGVEYINSQGKICHVNS 157 (749)
Q Consensus 80 ~~~D~N~g~~~G~~~c~~~c~~GaR~Saa~ayL~pa~~-r~NLtIlT~a~V~RIl~d-~ggrAtGV~y~d~~G~~~~V~A 157 (749)
..|+|+..+.|+...+.+.++|.|+|++.+|++|+.. |+||++..++.|+||++| .+++++||++....|++++++|
T Consensus 228 -~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a 306 (623)
T KOG1238|consen 228 -IFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFVRDGGKEHTVKA 306 (623)
T ss_pred -ccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceEEEEEEEecCceeeeecc
Confidence 4599999999999999999999999999999999876 999999999999999999 5689999999883389999999
Q ss_pred ccEEEEccCCCCChHHHhhcCCCccccccccCcceeecCC-CCCCcccccccceEEEEeCCCCccc----cchHHHHH-H
Q psy3407 158 TREVILSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAIT----LHYLRYLK-V 231 (749)
Q Consensus 158 rKeVILAAGAIeTPrLLL~SGIGpas~L~~~GIpvVaDLP-VGRNLqDHp~v~~v~~~~~e~~~~~----~~~~~l~~-~ 231 (749)
+||||||||||+||||||+|||||+++|+++|||+++|+| ||+|||||+..+ +......+.... .+.....+ .
T Consensus 307 ~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~-~~~~~~~~~~~~~~~~~~~~~~~~yl 385 (623)
T KOG1238|consen 307 RKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNP-GFVFSTNPVELSLIRLVGITTVGQYL 385 (623)
T ss_pred cceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccc-eeeecCCCccccccccccchHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999987 333333343220 01112222 5
Q ss_pred hhccC-ccccccceEEEEEecCCC---CCCCceeeeeccccCCccccccc---------------cccccceeeeeeecc
Q psy3407 232 AALKG-ISTVEVAKVVGFINTKRN---SLYPNVELLSIRIPMNSKERNNG---------------KSVMGSLFGQEVLVD 292 (749)
Q Consensus 232 ~~r~G-~ts~~~~e~~~f~~s~~~---~~~Pdiq~~f~p~~~g~d~~~~~---------------~~~~g~~i~i~l~lP 292 (749)
..++| +++.+ .+..+|+++... .++||+|+++.++....+..... .....+.+...+++|
T Consensus 386 ~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~l~P 464 (623)
T KOG1238|consen 386 EGGSGPLASPG-VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALGEIYQALFGELTNSDSFVIFPKLLRP 464 (623)
T ss_pred HcCCCCcccCc-ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcchHHHHhhhhhhcCceeEEeehhcCC
Confidence 66778 55333 788999987764 58999999888665444421111 111125556667999
Q ss_pred CCCCeEEecCCCCCCCceEEEeecCCCCCcccHHHHHHHHHHHHHHHHHHHH-hcCCCCccccc---------CCCCCCc
Q psy3407 293 DNDKDVIASPTNLTAKVQTIFESFTKMSETNININKKQFMSNMDKVFETIKT-KFEPFAEGEIP---------IESRSSY 362 (749)
Q Consensus 293 ~srGrVtL~skDp~G~PvI~i~Y~s~~~~p~~~~D~a~L~egir~arrIL~A-Aga~~~~~eis---------~~s~~~~ 362 (749)
.|+|++.|.++||...|.|++||+.+ | .|++.+.+|++.+.++.+. |++.++.+... ...+.+|
T Consensus 465 ~SrG~l~L~s~nP~~~P~I~~NY~~~---p---~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~y 538 (623)
T KOG1238|consen 465 KSRGRLKLRSTNPRDNPLITPNYFTH---P---EDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLLAFLSDAY 538 (623)
T ss_pred CccceEEecCCCCCcCceeccCcCCC---H---HHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccccCCCHHH
Confidence 99999999999999999999999999 8 9999999999999999997 77776665432 0122345
Q ss_pred ccCCC------CCCccccccCCCCCCCCCCCCCCccCCCCCccCCCCc
Q psy3407 363 WNNNS------DGTSKEACEMGKLGSSTPIKKHSVITSNNNSLNLENI 404 (749)
Q Consensus 363 ~~~~~------~Gt~mGTcRMG~D~~~~p~PktSVVD~~grsHD~~NL 404 (749)
|.+-. --|..|||+||..- -.++|||+.-|.|.++||
T Consensus 539 w~c~~R~~~~TiyH~~GtckMGp~~-----D~~aVVD~~lrV~Gv~~L 581 (623)
T KOG1238|consen 539 WECFCRHTVVTIYHYSGTCKMGPSS-----DPTAVVDPQLRVHGVRGL 581 (623)
T ss_pred HHHHHHhccceeeccCCceEeCCcc-----CCCcccCCcceeccccCc
Confidence 65222 12489999999631 379999999999999998
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-53 Score=483.10 Aligned_cols=383 Identities=28% Similarity=0.431 Sum_probs=305.3
Q ss_pred CEEEcCChhhhHHHHHc-CCCCCCccchHHHHHHhhcCCCCCCCC--CCCCCCCCCcccCCCCCCChHHHHHHHHHHHcC
Q psy3407 1 MLYQRGNDRDYNDWERA-GNPGWGFKHILPYFLKSEDFQDISRQD--AAFHNTGGYLTVSPRLSPDETVKIIEAAGKELK 77 (749)
Q Consensus 1 Miy~RGsp~DFD~Wa~l-G~~GWSYddLePYY~KaE~~~~gvsg~--~~~hG~~GPl~V~~P~~~~p~~~~f~~A~~eLG 77 (749)
|+|+|+++.|||.|++. |+++|+|+||+|||+|+|++ .++++. ...||..||+++..+....++.++|.++++++|
T Consensus 96 ~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~-~~~~g~~~~~~~g~~gp~~~~~~~~~~~~~~a~~~a~~~~G 174 (542)
T COG2303 96 MVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDL-LGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLG 174 (542)
T ss_pred ceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhh-cCCCCCCCCCCcCCCCCccccCCCCchHHHHHHHHHHHHcC
Confidence 79999999999999875 78999999999999999998 776554 347999999999877667899999999999999
Q ss_pred CCCCCCCCCCCCccccccccccCCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCe-EEEEE
Q psy3407 78 IGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGK-ICHVN 156 (749)
Q Consensus 78 ~~~~~D~N~g~~~G~~~c~~~c~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~-~~~V~ 156 (749)
++..+++|+..++|++.|+.+|..|+|+|+..+||+++++++|++|+|++.|+||+++ ++|++||++...++. .....
T Consensus 175 ~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~-~~r~~gv~~~~~~~~~~~~~~ 253 (542)
T COG2303 175 FPTTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLE-GDRAVGVEVEIGDGGTIETAV 253 (542)
T ss_pred CCcCcccccCCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEE-CCeeEEEEEEeCCCCceEEEe
Confidence 9999999999999999888887799999999999999999999999999999999999 789999999864332 34455
Q ss_pred eccEEEEccCCCCChHHHhhcCCCccccccccCcceeecCC-CCCCcccccccceEEEEeCCCCcc-cc---chHHHH--
Q psy3407 157 STREVILSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAI-TL---HYLRYL-- 229 (749)
Q Consensus 157 ArKeVILAAGAIeTPrLLL~SGIGpas~L~~~GIpvVaDLP-VGRNLqDHp~v~~v~~~~~e~~~~-~~---~~~~l~-- 229 (749)
|.++||||||+|+||+|||+||||++..+..+||+++.++| ||+|||||.... +.+..+.+... .. ......
T Consensus 254 a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (542)
T COG2303 254 AAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIY-VAFEATEPTNDSVLSLFSKLGIGAD 332 (542)
T ss_pred cCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhh-hheeccCccccccccccccccccce
Confidence 55999999999999999999999999999999999999999 999999999987 77776655411 00 000000
Q ss_pred H-HhhccC-ccccccceEEEEEecCCCCCCCceeeeeccccCCccccccccccccceeeeeeeccCCCCeEEecCCCCCC
Q psy3407 230 K-VAALKG-ISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGKSVMGSLFGQEVLVDDNDKDVIASPTNLTA 307 (749)
Q Consensus 230 ~-~~~r~G-~ts~~~~e~~~f~~s~~~~~~Pdiq~~f~p~~~g~d~~~~~~~~~g~~i~i~l~lP~srGrVtL~skDp~G 307 (749)
. ...++| .. ....+. +|..+......|++++++.+..+... ......++.+.....+|.++|.|.+++.||..
T Consensus 333 ~~~~~~~G~~~-~~~~~~-gf~~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~rp~srg~v~~~~~d~~~ 407 (542)
T COG2303 333 RYLLTRDGPGA-TNHFEG-GFVRSGPAGEYPDGQYHFAPLPLAIR---AAGAEHGFTLHVGPMRPKSRGSVTLRSPDPDN 407 (542)
T ss_pred eEEeecCCCcc-cccccc-cccccCccccCCCccccccccccccc---ccccCCccEEeeccCCCccccceecCCCCCcC
Confidence 0 234555 33 222332 37777665678888888875544322 12234456666678999999999999999999
Q ss_pred CceEEEeecCCCCCcccHHHHHHHHHHHHHHHHHHHH-hcCCCCcccccCC----CCC-------CcccCCCCCCccccc
Q psy3407 308 KVQTIFESFTKMSETNININKKQFMSNMDKVFETIKT-KFEPFAEGEIPIE----SRS-------SYWNNNSDGTSKEAC 375 (749)
Q Consensus 308 ~PvI~i~Y~s~~~~p~~~~D~a~L~egir~arrIL~A-Aga~~~~~eis~~----s~~-------~~~~~~~~Gt~mGTc 375 (749)
.|.|+.+|.++ + .|.+++.++++.+++++.. +.......|..+. ... ....... |++|||
T Consensus 408 ~p~i~~~~~~~---~---~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~~--H~~GT~ 479 (542)
T COG2303 408 RPVIDPNYLSA---E---GDRAIFRAGIRLTREIIGQPALDARRKAELAPGPRVTTDEDISAAIRFLARTAY--HPMGTC 479 (542)
T ss_pred CcccCccccCc---h---hHHHHHHHHHHHHHHHhcCccchhhHHHhhcCCCccccHHHHHHHHHhccCccc--cccccc
Confidence 99999999988 7 7999999999999999984 3322222222111 100 0011222 499999
Q ss_pred cCCCCCCCCCCCCCCccCCCCCccCCCCcc
Q psy3407 376 EMGKLGSSTPIKKHSVITSNNNSLNLENIL 405 (749)
Q Consensus 376 RMG~D~~~~p~PktSVVD~~grsHD~~NL~ 405 (749)
|||.| |++||+|++||.|+++|||
T Consensus 480 rMG~D------p~~~V~d~~lrv~g~~nL~ 503 (542)
T COG2303 480 RMGSD------PAAVVDDPYLRVHGLENLR 503 (542)
T ss_pred cCCCC------chhhccccccccccCCCeE
Confidence 99999 8999999999999999998
No 5
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=3.7e-43 Score=402.57 Aligned_cols=344 Identities=21% Similarity=0.290 Sum_probs=232.4
Q ss_pred CEEEcCChhhhHHHHHcCCCCCCccchHHHHHHhhcCCCCCCCCCCCCCCCCCcccCCCCCCChHHHHHHHHHHHcCCCC
Q psy3407 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRLSPDETVKIIEAAGKELKIGT 80 (749)
Q Consensus 1 Miy~RGsp~DFD~Wa~lG~~GWSYddLePYY~KaE~~~~gvsg~~~~hG~~GPl~V~~P~~~~p~~~~f~~A~~eLG~~~ 80 (749)
|+|.|+++.||+. .||+|++++|||+++|+. .. ..+...+....|.++++++|++.
T Consensus 140 ~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~-~~-----------------~~~~~~~~~~~~~~a~~e~G~~~ 195 (587)
T PLN02785 140 GFYSRASTRFIQK------AGWDAKLVNESYPWVERQ-IV-----------------HWPKVAPWQAALRDSLLEVGVSP 195 (587)
T ss_pred eEEEeCCHHHhcc------CCCCcccccchHHHHhcc-cc-----------------cCCCcChHHHHHHHHHHHcCCCc
Confidence 7899999999964 689999999999999986 21 01124677899999999999974
Q ss_pred CCCCCCCCCcccc--cccccc--CCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCCC---CcEEEEEEEecCCeEE
Q psy3407 81 MYDINRDQYIGFG--PFDTTT--RYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDSK---LKAYGVEYINSQGKIC 153 (749)
Q Consensus 81 ~~D~N~g~~~G~~--~c~~~c--~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~g---grAtGV~y~d~~G~~~ 153 (749)
. |+....++. .+..+. +.|.|++++. ++ ++..++||+|++++.|+||+++++ +||+||+|.+.+|+.+
T Consensus 196 ~---n~~~~d~~~G~~~g~~i~~~~g~R~saa~-l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~ 270 (587)
T PLN02785 196 F---NGFTYDHVYGTKVGGTIFDEFGRRHTAAE-LL-AAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQH 270 (587)
T ss_pred c---CCCCCCCccceeeeEEEeCCCCEEcCHHH-HH-hhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceE
Confidence 3 322221111 111223 5689988876 44 567789999999999999999842 3899999988667655
Q ss_pred EE----EeccEEEEccCCCCChHHHhhcCCCccccccccCcceeecCC-CCCCcccccccceEEEEeCCCCccccchHHH
Q psy3407 154 HV----NSTREVILSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAITLHYLRY 228 (749)
Q Consensus 154 ~V----~ArKeVILAAGAIeTPrLLL~SGIGpas~L~~~GIpvVaDLP-VGRNLqDHp~v~~v~~~~~e~~~~~~~~~~l 228 (749)
++ +++||||||||||+||+|||+|||||+++|+++|||+++|+| ||+|||||+... +.+..+.+... .....
T Consensus 271 ~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~-i~~~~~~~~~~--~~~~~ 347 (587)
T PLN02785 271 QAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNS-IFVPSKAPVEQ--SLIQT 347 (587)
T ss_pred EEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccc-eEEEeCCCchh--hhHhh
Confidence 54 256999999999999999999999999999999999999999 999999999987 77766554321 00000
Q ss_pred HHHhhccC-ccccccceEEEEEecC---------------------CCCCCCce-eeeeccccCCcccccccccccccee
Q psy3407 229 LKVAALKG-ISTVEVAKVVGFINTK---------------------RNSLYPNV-ELLSIRIPMNSKERNNGKSVMGSLF 285 (749)
Q Consensus 229 ~~~~~r~G-~ts~~~~e~~~f~~s~---------------------~~~~~Pdi-q~~f~p~~~g~d~~~~~~~~~g~~i 285 (749)
. .....| +.... .+|.... .....|+. +..+.. . .... .....+..+
T Consensus 348 ~-~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~--~~~~~~~~~ 417 (587)
T PLN02785 348 V-GITKMGVYIEAS----SGFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHR--K-KNLP--HEAFNGGFI 417 (587)
T ss_pred h-hhhccccceecc----cccccCchhhhhhccccccccccccccCcccccchhhhhhccC--c-cccc--ccccccceE
Confidence 0 111222 21000 0000000 00000000 000000 0 0000 000001112
Q ss_pred eeeeeccCCCCeEEecCCCCCCCceEEEeecCCCCCcccHHHHHHHHHHHHHHHHHHHH-hcCCCCccccc---------
Q psy3407 286 GQEVLVDDNDKDVIASPTNLTAKVQTIFESFTKMSETNININKKQFMSNMDKVFETIKT-KFEPFAEGEIP--------- 355 (749)
Q Consensus 286 ~i~l~lP~srGrVtL~skDp~G~PvI~i~Y~s~~~~p~~~~D~a~L~egir~arrIL~A-Aga~~~~~eis--------- 355 (749)
...+++|.++|+|+|.++||++.|.++++|+.+ | .|++.++++++.+++++++ ++..+...+..
T Consensus 418 ~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~---p---~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 491 (587)
T PLN02785 418 LEKIAGPISTGHLSLINTNVDDNPSVTFNYFKH---P---QDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMS 491 (587)
T ss_pred EEEecCCCcceEEEecCCCCCcCCccccccCCC---H---HHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccc
Confidence 335579999999999999999999999999999 8 9999999999999999987 44443322110
Q ss_pred --------CCC-CC-C----c----ccCCCCCCccccccCCCCCCCCCCCCCCccCCCCCccCCCCcc
Q psy3407 356 --------IES-RS-S----Y----WNNNSDGTSKEACEMGKLGSSTPIKKHSVITSNNNSLNLENIL 405 (749)
Q Consensus 356 --------~~s-~~-~----~----~~~~~~Gt~mGTcRMG~D~~~~p~PktSVVD~~grsHD~~NL~ 405 (749)
+.. .. + + .... .|.+||||||. |||+++|.|+++||+
T Consensus 492 ~~~~~~~~p~~~~~d~~l~~~ir~~~~t~--~H~~GTc~MG~-----------VVD~~lrV~GV~~LR 546 (587)
T PLN02785 492 VKANINLIPKHTNDTKSLEQFCKDTVITI--WHYHGGCHVGK-----------VVDQNYKVLGVSRLR 546 (587)
T ss_pred cccccccCCCCCCCHHHHHHHHHHhcccc--cCCcccccCCC-----------eECCCCeEeccCCeE
Confidence 000 00 0 0 0112 34899999993 999999999999997
No 6
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=7.3e-41 Score=348.03 Aligned_cols=203 Identities=37% Similarity=0.615 Sum_probs=172.1
Q ss_pred CEEEcCChhhhHHHHHc-CCCCCCccchHHHHHHhhcCCCCCCCCCCCCCCCCCccc-CCCCCCChHHHHHHHHHHHcCC
Q psy3407 1 MLYQRGNDRDYNDWERA-GNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTV-SPRLSPDETVKIIEAAGKELKI 78 (749)
Q Consensus 1 Miy~RGsp~DFD~Wa~l-G~~GWSYddLePYY~KaE~~~~gvsg~~~~hG~~GPl~V-~~P~~~~p~~~~f~~A~~eLG~ 78 (749)
|+|.|+++.|||.|+.. |.++|+|++|+|||+++|++ .+++ ...||..||+++ ..+.+..+..+.|.++++++|+
T Consensus 89 ~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~-~~~~--~~~~g~~~~~~v~~~~~~~~~~~~~~~~a~~~~G~ 165 (296)
T PF00732_consen 89 GVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETF-LGPS--SDLHGVDGPLPVSSSPPYPSPMNQALMDAAEELGI 165 (296)
T ss_dssp -BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEE-HTTB--GGGSCBSSSEEEHHHCSCHCTHHHHHHHHHHHTTH
T ss_pred cccccCCcccchhhhhcccccccchhhHHHHHHHHHhh-cccc--ccccccccccccccccCCCCHHHHHHHHHHHHcCC
Confidence 68999999999999987 88899999999999999988 6665 467888899988 4455677888999999999999
Q ss_pred CCCCCCCCCCCccccccccccCCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeC-CCCcEEEEEEEecCCe-EEEEE
Q psy3407 79 GTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILID-SKLKAYGVEYINSQGK-ICHVN 156 (749)
Q Consensus 79 ~~~~D~N~g~~~G~~~c~~~c~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d-~ggrAtGV~y~d~~G~-~~~V~ 156 (749)
+...+.+.+..+|+|.+...|+.|+|+|++.+||+++.+++|++|+++++|+||+++ ++++|+||+|.+.++. ...+.
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~ 245 (296)
T PF00732_consen 166 PVPQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIV 245 (296)
T ss_dssp HBCSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEE
T ss_pred ccccccccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeec
Confidence 976688888777877665569999999999999999999999999999999999996 5789999999997665 34444
Q ss_pred eccEEEEccCCCCChHHHhhcCCCccccccccCcceeecCCCCCCccccc
Q psy3407 157 STREVILSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLPVGENLQDHV 206 (749)
Q Consensus 157 ArKeVILAAGAIeTPrLLL~SGIGpas~L~~~GIpvVaDLPVGRNLqDHp 206 (749)
++|+||||||||+||+|||+|||||..+|+++||+++.|+|||||||||+
T Consensus 246 ~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~ 295 (296)
T PF00732_consen 246 AAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHP 295 (296)
T ss_dssp EEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--E
T ss_pred cceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhccc
Confidence 44999999999999999999999999999999999999999999999997
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=9.2e-38 Score=354.61 Aligned_cols=349 Identities=10% Similarity=0.060 Sum_probs=220.9
Q ss_pred EEcCChhhhHHHHHcC-CCCC--CccchHHHHHHhhcCCCCCCCCCCCCCCCCCcccCCCC-CCChHHHHHHHHHHHcCC
Q psy3407 3 YQRGNDRDYNDWERAG-NPGW--GFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRL-SPDETVKIIEAAGKELKI 78 (749)
Q Consensus 3 y~RGsp~DFD~Wa~lG-~~GW--SYddLePYY~KaE~~~~gvsg~~~~hG~~GPl~V~~P~-~~~p~~~~f~~A~~eLG~ 78 (749)
+.|.+|.+ +.| ..|| +|+||+|||+++|++ +|+++ +. ..|+ ......+.+.++++ |+
T Consensus 128 ~~R~~p~~-----r~g~~~dWPI~y~eL~PyY~~Ae~~-~gv~g---------~~--~~~~~~~~~~~~~~~~~~~--g~ 188 (544)
T TIGR02462 128 TPRFHREE-----RPKLSDDAAEDDAEWDRLYTKAESL-IGTST---------DQ--FDESIRHNLVLRKLQDEYK--GQ 188 (544)
T ss_pred cCCCCHHh-----ccCCCCCCCCCHHHHHHHHHHHHHH-hCCCC---------Cc--CCCcccchhHHHHHHHHhc--cc
Confidence 56777753 233 2689 999999999999999 77542 11 1111 22334444444443 33
Q ss_pred -CCCCCCCCCCCccccccccccCCCcccchhhhhhhhhc----cCCCeEEEcccEEEEEEeCCC--CcEEEEEEEec-CC
Q psy3407 79 -GTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAK----FRENLIILKNTEVIKILIDSK--LKAYGVEYINS-QG 150 (749)
Q Consensus 79 -~~~~D~N~g~~~G~~~c~~~c~~GaR~Saa~ayL~pa~----~r~NLtIlT~a~V~RIl~d~g--grAtGV~y~d~-~G 150 (749)
+..+.+.+ +..+ .|+.++|+|+..+.+..+. +++|++|++++.|+||+++++ ++|+||+|.+. +|
T Consensus 189 ~~~~~~PlA-----~~~~--~c~~~ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g 261 (544)
T TIGR02462 189 RDFQPLPLA-----CHRR--TDPTYVEWHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSG 261 (544)
T ss_pred cccccCchh-----hhcc--CCCccceecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCC
Confidence 33233333 2222 6888999998777786655 489999999999999999843 58999999987 68
Q ss_pred eEEEEEeccEEEEccCCCCChHHHhhcCCCccccccccCcceeecC---C-CCCCcccccccceEEEEeCCCCcc-ccch
Q psy3407 151 KICHVNSTREVILSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDL---P-VGENLQDHVCFPGVLFSSNKDPAI-TLHY 225 (749)
Q Consensus 151 ~~~~V~ArKeVILAAGAIeTPrLLL~SGIGpas~L~~~GIpvVaDL---P-VGRNLqDHp~v~~v~~~~~e~~~~-~~~~ 225 (749)
+.++++| |.||||||+||||||||+|+++... .+.|+ +|+ . ||||||||+... +...++++... ..+.
T Consensus 262 ~~~~v~A-~~vVLAagaIetpRLLL~S~~~~~~--~p~gl---~Nss~~g~VGRnlmdh~~~~-~~~~~~~~~~~~~~~~ 334 (544)
T TIGR02462 262 DRFEIKA-DVYVLACGAVHNPQILVNSGFGQLG--RPDPT---NPPPLLPSLGRYITEQSMTF-CQIVLSTELVDSVRSD 334 (544)
T ss_pred cEEEEEC-CEEEEccCchhhHHHHHhCCCCCCc--CCCCc---CCCCCCCCCCcchhcCCCcc-EEEEecchhhhhccCC
Confidence 8899999 8999999999999999999987533 35666 553 5 999999999887 66666654311 0011
Q ss_pred HH---HH-H--HhhccCccccccceEEEEEecCCCCCCCce-------eeeeccccCCccccccc-cccccceeeeeeec
Q psy3407 226 LR---YL-K--VAALKGISTVEVAKVVGFINTKRNSLYPNV-------ELLSIRIPMNSKERNNG-KSVMGSLFGQEVLV 291 (749)
Q Consensus 226 ~~---l~-~--~~~r~G~ts~~~~e~~~f~~s~~~~~~Pdi-------q~~f~p~~~g~d~~~~~-~~~~g~~i~i~l~l 291 (749)
.. +. . .....++.. . .....|.........|.. +.......++...+... +....+. ...+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~~~~~~~~~~~v~l~-~~~e~l 411 (544)
T TIGR02462 335 PRGLDWWKEKVANHMMKHPE-D-PLPIPFRDPEPQVTTPFTEEHPWHTQIHRDAFSYGAVGPSIDSRVIVDLR-FFGRTE 411 (544)
T ss_pred ccccccccccchhhhccccC-C-cccccccccCcccccccccccccchhhhhhhhhcccccccccccceeeEE-EEeccC
Confidence 00 00 0 000111100 0 000001000000000000 00000000111111000 1111222 336789
Q ss_pred cCCCCeEEecC--CCCCCCceEEEeecCCCCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCC
Q psy3407 292 DDNDKDVIASP--TNLTAKVQTIFESFTKMSETNININKKQFMSNMDKVFETIKTKFEPFAEGEIPIESRSSYWNNNSDG 369 (749)
Q Consensus 292 P~srGrVtL~s--kDp~G~PvI~i~Y~s~~~~p~~~~D~a~L~egir~arrIL~AAga~~~~~eis~~s~~~~~~~~~~G 369 (749)
|..+|||+|++ +|.+|+|+++++|..+ + +|++.++++++.++++++++++...... + .+.......
T Consensus 412 P~~~NrV~Ld~~~~D~~G~P~~~i~~~~~---~---~d~~~~~~~~~~~~~i~~~~G~~~~~~~-~-----~~~~~~~~~ 479 (544)
T TIGR02462 412 PKEENKLVFQDKVTDTYNMPQPTFDFRFS---A---ADSKRARRMMTDMCNVAAKIGGYLPGSL-P-----QFMEPGLAL 479 (544)
T ss_pred CCCCCeEEcCCCCcCCCCCeeEEEEEeCC---H---HHHHHHHHHHHHHHHHHHHcCCCccccc-c-----cccCCCccc
Confidence 99999999974 7999999999999888 7 9999999999999999998865322111 0 111111123
Q ss_pred CccccccCCCCCCCCCCCCCCccCCCCCccCCCCcc
Q psy3407 370 TSKEACEMGKLGSSTPIKKHSVITSNNNSLNLENIL 405 (749)
Q Consensus 370 t~mGTcRMG~D~~~~p~PktSVVD~~grsHD~~NL~ 405 (749)
|.+||||||+| |++||||++||+|+++|||
T Consensus 480 H~~Gt~rMG~d------p~~sVvd~~~rv~g~~NL~ 509 (544)
T TIGR02462 480 HLAGTTRIGFD------EQTTVANTDSKVHNFKNLY 509 (544)
T ss_pred cCCCCeecCCC------CCCceECCCCcEeCCCCeE
Confidence 49999999998 8999999999999999998
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.67 E-value=8.7e-17 Score=150.98 Aligned_cols=100 Identities=12% Similarity=0.160 Sum_probs=72.3
Q ss_pred cCCCCeEEecCCCCCCCceEEEeecCCCCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCCC-----CCCcc---
Q psy3407 292 DDNDKDVIASPTNLTAKVQTIFESFTKMSETNININKKQFMSNMDKVFETIKTKFEPFAEGEIPIES-----RSSYW--- 363 (749)
Q Consensus 292 P~srGrVtL~skDp~G~PvI~i~Y~s~~~~p~~~~D~a~L~egir~arrIL~AAga~~~~~eis~~s-----~~~~~--- 363 (749)
|.++|+|+|+++||+|.|.++++|+.+ + +|++.+.++++.+++++++++.++...+..+.. ....+
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~---~---~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSD---P---RDLEALREGIKRARRILRAAFEEIGAGELLPGPSPFCPDASLDSDE 74 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSS---H---HHHHHHHHHHHHHHHHHTSGGGGTEEEEEESCGCSCCGCSTTTCHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCC---H---HHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccccch
Confidence 889999999999999999999999999 8 999999999999999999873332222211110 00000
Q ss_pred ----------cCCCCCCccccccCCCCCCCCCCCCCCccCCCCCccCCCCcc
Q psy3407 364 ----------NNNSDGTSKEACEMGKLGSSTPIKKHSVITSNNNSLNLENIL 405 (749)
Q Consensus 364 ----------~~~~~Gt~mGTcRMG~D~~~~p~PktSVVD~~grsHD~~NL~ 405 (749)
... .|.+||||||.+ |++||||++||.|+++|||
T Consensus 75 ~~~~~~~~~~~~~--~H~~Gt~~mG~~------~~~~VvD~~~rv~g~~nL~ 118 (144)
T PF05199_consen 75 DLECYIRQNVGTS--WHPSGTCRMGPD------PDTSVVDPDLRVHGVRNLR 118 (144)
T ss_dssp HHHHHHHHHGEEC--SS-BETT-BTSS------TTTTSB-TTSBBTTSBSEE
T ss_pred hhhhheeecccee--cccccceecccc------CCceeECCCCCeeeeeeEE
Confidence 012 249999999999 7999999999999999998
No 9
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.90 E-value=0.0023 Score=75.04 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=53.1
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC-hHHHh
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS-PQLLM 175 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT-PrLLL 175 (749)
..|..+.+..|++|++++.|++|+.|++++|+||.+.. +|+.+.++|++-||||+|+++. |.+|.
T Consensus 217 ~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 217 ARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVER-EGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEe-CCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 34555567789999999999999998668999999965 7888889996689999999985 44443
No 10
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.46 E-value=0.0084 Score=69.07 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=51.0
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC-hHHHh
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS-PQLLM 175 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT-PrLLL 175 (749)
++..+.+++|++|++++.|++|+.+ +++++||.+.. +|...+++|+|.||||+|.++. +.++.
T Consensus 179 l~~~~~~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~-~g~~~~i~A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 179 FLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVER-GGERRRVRARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred HHHHHHhCCCCEEEeCCEEEEEEec-CCEEEEEEEEE-CCcEEEEEeCceEEEeCCCccCCHHHHH
Confidence 4444455679999999999999987 68999999865 7888899997799999999964 44443
No 11
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.12 E-value=0.014 Score=67.94 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=51.0
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhh
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLML 176 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~ 176 (749)
|....++.+++|++++.|++|+.+ +++|+||.+.. +|+...++|++.||||+|.++.=+-|+.
T Consensus 214 L~~~~~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~-~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 214 LRIGLQRAGVPVLLNTPLTDLYVE-DGRVTGVHAAE-SGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred HHHHHHcCCCEEEeCCEEEEEEEe-CCEEEEEEEEe-CCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 334456778999999999999987 57999999876 7778889996689999999988554443
No 12
>PRK07121 hypothetical protein; Validated
Probab=95.94 E-value=0.022 Score=64.97 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=48.2
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT 170 (749)
|....++.+++|++++.|++|+.+++++++||.+.+ +|+...++|+|.||||+|.+..
T Consensus 183 L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 183 LAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCc
Confidence 333455678999999999999998557999999976 6777789998999999998875
No 13
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.87 E-value=0.022 Score=66.44 Aligned_cols=56 Identities=20% Similarity=0.426 Sum_probs=48.1
Q ss_pred hhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCCh
Q psy3407 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSP 171 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTP 171 (749)
...++.+++|++++.|++|+.+ +++|+||.+.. +|+.+.++|++-||||+|.+..-
T Consensus 216 ~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~-~g~~~~i~A~~aVIlAtGG~~~N 271 (557)
T PRK12844 216 EAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVR-DGREVLIRARRGVLLASGGFGHN 271 (557)
T ss_pred HHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEE-CCeEEEEEecceEEEecCCccCC
Confidence 3445679999999999999987 58999999976 78888899977899999998873
No 14
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.53 E-value=0.035 Score=62.67 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=53.9
Q ss_pred hhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCCCc
Q psy3407 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIGI 181 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIGp 181 (749)
...++.+++|+.++.|++|+.+ +++++||.+.+.+|+...++| |.||||+|.+...+.|+.+-.++
T Consensus 139 ~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a-~~VIlAtGg~~~n~~~~~~~~~~ 204 (466)
T PRK08274 139 RSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRA-KAVVLAAGGFESNREWLREAWGQ 204 (466)
T ss_pred HHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEEC-CEEEECCCCCCCCHHHHHhhcCC
Confidence 3345678999999999999987 579999998644676778888 89999999999988888765443
No 15
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.44 E-value=0.092 Score=61.62 Aligned_cols=54 Identities=17% Similarity=0.325 Sum_probs=46.6
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeT 170 (749)
..+.+++|+.++.|++|+.+++++++||...+ .+|+...++| |-||||+|.+..
T Consensus 136 ~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 190 (570)
T PRK05675 136 NLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKS-KATVLATGGAGR 190 (570)
T ss_pred HhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEec-CeEEECCCCccc
Confidence 44678999999999999987568999999876 3788888999 899999999874
No 16
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.41 E-value=0.033 Score=61.59 Aligned_cols=56 Identities=27% Similarity=0.418 Sum_probs=44.0
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
.++.+.+|+.++.|++|+.+ +++|+||.+.+. +|+..+++| +.||||+|.++. .++
T Consensus 151 ~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A-~aVIlAtGG~~~-~~~ 207 (417)
T PF00890_consen 151 AEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKA-KAVILATGGFGG-ELL 207 (417)
T ss_dssp HHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEE-SEEEE----BGG-HHH
T ss_pred HhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEee-eEEEeccCcccc-ccc
Confidence 34456999999999999998 579999999843 789999999 699999999998 444
No 17
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.22 E-value=0.1 Score=60.57 Aligned_cols=58 Identities=24% Similarity=0.503 Sum_probs=47.6
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCC
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeT 170 (749)
|....++.|++|++++.|++|+.+++++++||...+ .+|..+.++| |.||||+|.+..
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYA-KATILATGGAGQ 198 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEc-CcEEECCCCCCC
Confidence 333345678999999999999988556799999876 5787788999 899999999874
No 18
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.08 E-value=0.15 Score=60.35 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=44.5
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCC
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeT 170 (749)
.+|++|+.++.|++|+.+++++++||.+.+. +|....+.| |-||||+|.+..
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSA-DAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcC
Confidence 4689999999999999875679999999874 577678888 899999999864
No 19
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.95 E-value=0.17 Score=59.67 Aligned_cols=54 Identities=15% Similarity=0.322 Sum_probs=46.1
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeT 170 (749)
..+.+++|++++.|++|+.+++++++||...+. +|....++| |-||||+|.+..
T Consensus 153 ~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 207 (588)
T PRK08958 153 NLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKA-RATVLATGGAGR 207 (588)
T ss_pred hhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence 346789999999999999865689999998753 688888999 899999999874
No 20
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.80 E-value=0.077 Score=62.26 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=46.8
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
.++.|++|++++.|++|+.+ +++++||.+.. +|....++|+|-||||+|.++.-.
T Consensus 227 ~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-~g~~~~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 227 VLRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-RGREVTVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHHCCCEEEecCEeeEEEec-CCEEEEEEEEE-CCcEEEEEcCCEEEEecCCccccH
Confidence 45678999999999999976 58999998876 677788889889999999998643
No 21
>PRK12839 hypothetical protein; Provisional
Probab=94.79 E-value=0.079 Score=62.26 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=44.9
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT 170 (749)
+++.+++|++++.|++|+.+++++++||.+.+.+|. ..+.++|.||||+|++..
T Consensus 224 a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~-~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 224 ADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGA-VTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCc-EEEEeCCEEEEcCCCccc
Confidence 456689999999999999875689999999875554 556666999999999986
No 22
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=94.71 E-value=0.085 Score=61.94 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=48.0
Q ss_pred hhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
..+++.+++|++++.|++|+.+ +++++||.+.+ ++....++|+|.||||+|++..-.-+
T Consensus 225 ~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 225 KSAEDLGVRIWESAPARELLRE-DGRVAGAVVET-PGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEE-CCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 3445678999999999999987 68999999876 55556788878999999999764444
No 23
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.69 E-value=0.19 Score=60.01 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=45.7
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeT 170 (749)
.++.|++|+.++.|++|+.+ +++++||.+.+. +|....+.| |.||||+|.+..
T Consensus 180 ~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 233 (640)
T PRK07573 180 IAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTA-DAVVLATGGYGN 233 (640)
T ss_pred HHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEEC-CEEEECCCCccc
Confidence 45678999999999999987 579999999874 677778888 899999999886
No 24
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.67 E-value=0.22 Score=58.33 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=44.7
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIe 169 (749)
..+.|++++.++.|++|+.+ +++++||...+. +|....++| |-||||+|.++
T Consensus 146 ~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 198 (566)
T PRK06452 146 TSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG 198 (566)
T ss_pred HHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence 34568999999999999987 589999999874 566778889 99999999987
No 25
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=94.61 E-value=0.099 Score=58.57 Aligned_cols=59 Identities=22% Similarity=0.230 Sum_probs=47.1
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT 170 (749)
.|...+++.+++|+.++.|++|+.+++++++||++.+.+|+...+.+ +.||||+|++..
T Consensus 135 ~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~ 193 (439)
T TIGR01813 135 KLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAA-KAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEec-ceEEEecCCCCC
Confidence 34344456789999999999999975679999999875566556677 999999998875
No 26
>PRK06175 L-aspartate oxidase; Provisional
Probab=94.28 E-value=0.11 Score=58.74 Aligned_cols=54 Identities=24% Similarity=0.436 Sum_probs=44.3
Q ss_pred hhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC
Q psy3407 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT 170 (749)
.+.++.|++|++++.|++|+.+ +++++||...+ +|....++| |.||||+|++..
T Consensus 137 ~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~-~g~~~~i~A-k~VILAtGG~~~ 190 (433)
T PRK06175 137 KVKKRKNITIIENCYLVDIIEN-DNTCIGAICLK-DNKQINIYS-KVTILATGGIGG 190 (433)
T ss_pred HHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEE-CCcEEEEEc-CeEEEccCcccc
Confidence 3445679999999999999887 57899998766 566667899 899999999764
No 27
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=94.05 E-value=0.14 Score=60.20 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=48.1
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCCh
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSP 171 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTP 171 (749)
|...+++.+++|++++.|++|+.+ +++++||.+.. +|+.+.++|++.||||+|++..-
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQ-GGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEec-CCeEEEEEccceEEECCCCcccC
Confidence 334455678999999999999987 58999999876 77778888878999999998874
No 28
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.04 E-value=0.13 Score=60.77 Aligned_cols=54 Identities=19% Similarity=0.323 Sum_probs=46.0
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeT 170 (749)
..+.|++|++++.|++|+.+++++++||.+.+ .+|..+.+.| |.||||+|.++.
T Consensus 159 ~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 213 (598)
T PRK09078 159 SLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRA-HMVVLATGGYGR 213 (598)
T ss_pred HhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcc
Confidence 34578999999999999997557999999865 3787788999 899999999875
No 29
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=93.87 E-value=0.14 Score=59.98 Aligned_cols=57 Identities=18% Similarity=0.330 Sum_probs=47.3
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCC
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeT 170 (749)
|....++.+++|+.++.|++|+.+ +++++||...+. +|....++| |-||||+|.+..
T Consensus 125 L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~A-kaVILATGG~~~ 182 (565)
T TIGR01816 125 LYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRA-KAVVLATGGYGR 182 (565)
T ss_pred HHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEe-CeEEECCCCccc
Confidence 333345678999999999999987 689999998753 688888999 899999999875
No 30
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=93.69 E-value=0.48 Score=55.84 Aligned_cols=54 Identities=19% Similarity=0.373 Sum_probs=44.9
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeT 170 (749)
+.+.+|+++++++.|++|+.+ +++++||...+ .+|....++| |-||||+|.+..
T Consensus 143 ~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 197 (582)
T PRK09231 143 SLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR 197 (582)
T ss_pred hhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEC-CEEEECCCCCcC
Confidence 334468999999999999987 57999999865 3677778888 899999998764
No 31
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=93.58 E-value=0.16 Score=60.18 Aligned_cols=54 Identities=13% Similarity=0.284 Sum_probs=45.7
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeT 170 (749)
..+.|++|+.++.|++|+.+++++++||.+.+. +|+.+.++| |-||||+|.+..
T Consensus 176 a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 230 (617)
T PTZ00139 176 SLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRA-HYTVIATGGYGR 230 (617)
T ss_pred HHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEEC-CcEEEeCCCCcc
Confidence 446789999999999999854689999998663 688888898 899999998864
No 32
>PRK08275 putative oxidoreductase; Provisional
Probab=93.20 E-value=0.21 Score=58.37 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=46.4
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIe 169 (749)
.|....++.|++|+.++.|++|+.+++++++||.+.+. +|....++| |.||||+|+..
T Consensus 142 ~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~ 200 (554)
T PRK08275 142 VLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRA-KAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEEC-CEEEECCCCcc
Confidence 34343456789999999999999874578999998653 677677888 89999999875
No 33
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=93.08 E-value=0.29 Score=56.53 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=64.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCC---CccccccccccCCCccc--chhhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEE
Q psy3407 68 IIEAAGKELKIGTMYDINRDQ---YIGFGPFDTTTRYGLRC--STSKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYG 142 (749)
Q Consensus 68 ~f~~A~~eLG~~~~~D~N~g~---~~G~~~c~~~c~~GaR~--Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtG 142 (749)
..++.+.++|.+...+..++- .+|-.......+.+... .-..+.+..+++++|++|+.++.|.+|+.+++..+.|
T Consensus 91 ~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~G 170 (518)
T COG0029 91 EAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAG 170 (518)
T ss_pred HHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeE
Confidence 344556678998775544422 12322222222211111 1223344456778999999999999999985445669
Q ss_pred EEEEecCCeEEEEEeccEEEEccCCCC
Q psy3407 143 VEYINSQGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 143 V~y~d~~G~~~~V~ArKeVILAAGAIe 169 (749)
|.+.+.+++...++| +.||||+|.++
T Consensus 171 v~~~~~~~~~~~~~a-~~vVLATGG~g 196 (518)
T COG0029 171 VLVLNRNGELGTFRA-KAVVLATGGLG 196 (518)
T ss_pred EEEecCCCeEEEEec-CeEEEecCCCc
Confidence 999874446788899 99999999764
No 34
>PLN02815 L-aspartate oxidase
Probab=93.08 E-value=0.2 Score=59.22 Aligned_cols=54 Identities=19% Similarity=0.363 Sum_probs=44.5
Q ss_pred hccCCCeEEEcccEEEEEEeCC-CC--cEEEEEEEec-CCeEEEEEeccEEEEccCCCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDS-KL--KAYGVEYINS-QGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~-gg--rAtGV~y~d~-~G~~~~V~ArKeVILAAGAIe 169 (749)
+.+.+|++|+.++.|++|+.++ ++ +++||.+.+. +|....+.| |-||||+|.++
T Consensus 165 ~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g 222 (594)
T PLN02815 165 VKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFIS-KVTLLASGGAG 222 (594)
T ss_pred HHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEe-ceEEEcCCcce
Confidence 4445799999999999999863 33 4999998754 677788898 99999999886
No 35
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=92.99 E-value=0.23 Score=59.18 Aligned_cols=53 Identities=21% Similarity=0.372 Sum_probs=45.6
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeT 170 (749)
.+.|++|+.++.|++|+.++++++.||.+.+. +|+...++| |.||||+|.+.-
T Consensus 198 ~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 251 (635)
T PLN00128 198 MKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRA-HSTILATGGYGR 251 (635)
T ss_pred HhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEc-CeEEECCCCCcc
Confidence 45689999999999999875579999998764 688888999 899999999874
No 36
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=92.92 E-value=0.14 Score=48.19 Aligned_cols=72 Identities=31% Similarity=0.529 Sum_probs=48.4
Q ss_pred CCCCCcceeeeccceEEeecC-----CCC------CCc------eeeEEeccch---hhhcCCCceeEEEecccceEEEE
Q psy3407 562 KSAWTPGFVNLQNGILTVKEA-----PNS------PKN------ISVIQCHSFS---QVYDKSRPYTFKVNFNPYSFVLF 621 (749)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~-----~~~------~~~------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 621 (749)
+..|..-|+-|+.+.|.+-.. ++. ++| |++ .|+.. .=|.| ||+.|.+.-.-.+-.||
T Consensus 23 ~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L--~~a~a~~a~dY~K-r~~VFrL~~~dg~e~Lf 99 (119)
T PF15410_consen 23 KRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISL--HHALAEIASDYTK-RKNVFRLRTADGSEYLF 99 (119)
T ss_dssp ---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE---TT-EEEEETTBTT-CSSEEEEE-TTS-EEEE
T ss_pred CCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEe--cceEEEeCccccc-CCeEEEEEeCCCCEEEE
Confidence 446999999999999987433 111 112 343 34443 33888 99999999877899999
Q ss_pred ecCChhhhhHHHHhe
Q psy3407 622 AAPDESQLFDWLQDI 636 (749)
Q Consensus 622 ~~~~~~~~~~~~~~~ 636 (749)
.|+|+.++.+|++-|
T Consensus 100 qa~~~~~m~~Wi~~I 114 (119)
T PF15410_consen 100 QASDEEEMNEWIDAI 114 (119)
T ss_dssp E-SSHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHH
Confidence 999999999999876
No 37
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=92.81 E-value=0.62 Score=54.97 Aligned_cols=53 Identities=19% Similarity=0.349 Sum_probs=45.0
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeT 170 (749)
.+.+|++++.++.|++|+.+ +++++||...+. +|....++| |-||||+|...-
T Consensus 143 ~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 196 (580)
T TIGR01176 143 LTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILA-DAVVLATGGAGR 196 (580)
T ss_pred HhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEec-CEEEEcCCCCcc
Confidence 34578999999999999987 579999998763 677788999 899999998763
No 38
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=92.79 E-value=0.58 Score=54.61 Aligned_cols=53 Identities=17% Similarity=0.333 Sum_probs=44.5
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeT 170 (749)
..+.|++|+.++.|++|+.+ +++++||.+.+. +|+...++| |.||||+|....
T Consensus 139 ~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGG~~~ 192 (566)
T TIGR01812 139 CLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRA-KAVVLATGGYGR 192 (566)
T ss_pred HHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEEC-CeEEECCCcccC
Confidence 34458999999999999987 589999998763 676678888 999999998864
No 39
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=92.78 E-value=0.14 Score=53.93 Aligned_cols=56 Identities=39% Similarity=0.497 Sum_probs=42.5
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
.++.|++|++++.|++|..+ +++++||+.. +| .++| +.||+|+|+ .|++|+..+|+
T Consensus 157 ~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~--~g---~i~a-d~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 157 AQRAGVEIRTGTEVTSIDVD-GGRVTGVRTS--DG---EIRA-DRVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHHTT-EEEESEEEEEEEEE-TTEEEEEEET--TE---EEEE-CEEEE--GG-GHHHHHHTTTT
T ss_pred HHHhhhhccccccccchhhc-cccccccccc--cc---cccc-ceeEecccc-cceeeeecccc
Confidence 34568999999999999998 6789889874 34 3788 999999996 68888877763
No 40
>PRK08071 L-aspartate oxidase; Provisional
Probab=92.75 E-value=0.6 Score=54.12 Aligned_cols=50 Identities=24% Similarity=0.453 Sum_probs=43.7
Q ss_pred CCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC
Q psy3407 119 ENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 119 ~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT 170 (749)
.|++|+.++.|++|+.+ ++++.||...+.+|+...++| +.||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~g~~~~i~A-k~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE-NGRCIGVLTKDSEGKLKRYYA-DYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeec-CCEEEEEEEEECCCcEEEEEc-CeEEEecCCCcc
Confidence 68999999999999887 579999998775677778888 899999999875
No 41
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.74 E-value=0.67 Score=54.45 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=44.9
Q ss_pred hhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCC
Q psy3407 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeT 170 (749)
...++.|++|++++.|++|+.+ ++++.||...+ .+|+...++| |.||||+|+...
T Consensus 143 ~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVlATGG~~~ 198 (575)
T PRK05945 143 NNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRA-KAVMFATGGYGR 198 (575)
T ss_pred HHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEEC-CEEEECCCCCcC
Confidence 3345678999999999999887 57999998755 3677677888 899999999864
No 42
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=92.69 E-value=0.33 Score=56.93 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=45.1
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
..++.+++|++++.|++|+.+ +++++||.+.+ .+....++|+|.||||+|.+..-.
T Consensus 223 ~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~ 278 (574)
T PRK12842 223 SALDLGIPILTGTPARELLTE-GGRVVGARVID-AGGERRITARRGVVLACGGFSHDL 278 (574)
T ss_pred HHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEc-CCceEEEEeCCEEEEcCCCccchH
Confidence 345678999999999999987 57999999986 344456888678999999987433
No 43
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.67 E-value=0.78 Score=54.19 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=43.1
Q ss_pred CCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCC
Q psy3407 119 ENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 119 ~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeT 170 (749)
.+++++.++.|++|+.+++++++||...+. +|+...++| |.||||+|.+..
T Consensus 150 ~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 201 (589)
T PRK08641 150 GLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPA-DAVIMATGGPGI 201 (589)
T ss_pred CCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEEC-CEEEECCCCCcC
Confidence 358999999999999875689999999875 466677888 899999999875
No 44
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.66 E-value=0.59 Score=40.29 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=54.0
Q ss_pred CceeEEecCCCCCCcceeeeccceEEeecCCCCC--Cc---eeeEEeccchhhhcCCCceeEEEecccc-eEEEEecCCh
Q psy3407 553 GNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSP--KN---ISVIQCHSFSQVYDKSRPYTFKVNFNPY-SFVLFAAPDE 626 (749)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 626 (749)
|-|+.+=+-...|..=|+-|.++.|..-..++.. +. |.+-+|. -..+..+|++|.|.. |. ....|.|+++
T Consensus 3 G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~---~~~~~~~~~~F~i~~-~~~~~~~~~a~s~ 78 (91)
T cd01246 3 GWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAV---ISEDDSDDKCFTIDT-GGDKTLHLRANSE 78 (91)
T ss_pred EEEEEecccCCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEE---EEECCCCCcEEEEEc-CCCCEEEEECCCH
Confidence 4444443344678888888999988886665533 22 2222332 123566799999975 44 7788999999
Q ss_pred hhhhHHHHhe
Q psy3407 627 SQLFDWLQDI 636 (749)
Q Consensus 627 ~~~~~~~~~~ 636 (749)
.+.-+|++.|
T Consensus 79 ~e~~~Wi~al 88 (91)
T cd01246 79 EERQRWVDAL 88 (91)
T ss_pred HHHHHHHHHH
Confidence 9999999764
No 45
>PRK09077 L-aspartate oxidase; Provisional
Probab=92.65 E-value=0.3 Score=56.79 Aligned_cols=55 Identities=16% Similarity=0.377 Sum_probs=45.9
Q ss_pred hccCCCeEEEcccEEEEEEeCC-----CCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDS-----KLKAYGVEYINS-QGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~-----ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeT 170 (749)
+.+++|++|++++.|++|+.++ +++++||.+.+. +|+...++| |-||||+|.+..
T Consensus 148 ~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 208 (536)
T PRK09077 148 ARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRA-KFVVLATGGASK 208 (536)
T ss_pred HHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEec-CeEEECCCCCCC
Confidence 4456799999999999998863 379999999764 577778888 899999999874
No 46
>PRK07395 L-aspartate oxidase; Provisional
Probab=92.53 E-value=0.2 Score=58.76 Aligned_cols=53 Identities=23% Similarity=0.427 Sum_probs=44.6
Q ss_pred ccCCCeEEEcccEEEEEEeCC-CCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDS-KLKAYGVEYINSQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~-ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT 170 (749)
.+++|++|+.++.|++|+.++ +++++||...+ +|....++| |-||||+|.++.
T Consensus 145 ~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-~g~~~~i~A-kaVILATGG~~~ 198 (553)
T PRK07395 145 LQRPNIEIISQALALSLWLEPETGRCQGISLLY-QGQITWLRA-GAVILATGGGGQ 198 (553)
T ss_pred hhcCCcEEEECcChhhheecCCCCEEEEEEEEE-CCeEEEEEc-CEEEEcCCCCcc
Confidence 346799999999999999873 47999998876 777777888 899999999753
No 47
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=92.52 E-value=0.19 Score=43.22 Aligned_cols=86 Identities=22% Similarity=0.334 Sum_probs=58.5
Q ss_pred cCceeEEecCCCCCCcceeeeccceEEeecCCC---CCCceeeEEeccchhh---------hcCCCceeEEEecccceEE
Q psy3407 552 SGNLMYKINDKSAWTPGFVNLQNGILTVKEAPN---SPKNISVIQCHSFSQV---------YDKSRPYTFKVNFNPYSFV 619 (749)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 619 (749)
.|-|.-+-.....|..-|+-|.++.|..=..+. .-+...+|....+ .| ..+.+++.|.+.+..-.-.
T Consensus 4 ~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~ 82 (104)
T PF00169_consen 4 EGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSY 82 (104)
T ss_dssp EEEEEEEESSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEE
T ss_pred EEEEEEECCCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEE
Confidence 343333334566777777777777777666555 3444445554444 22 2357899999999888677
Q ss_pred EEecCChhhhhHHHHheee
Q psy3407 620 LFAAPDESQLFDWLQDIMI 638 (749)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~ 638 (749)
+|.++++.+.-+|++.|.-
T Consensus 83 ~~~~~s~~~~~~W~~~i~~ 101 (104)
T PF00169_consen 83 LFSAESEEERKRWIQAIQK 101 (104)
T ss_dssp EEEESSHHHHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHHHHH
Confidence 8889999999999998754
No 48
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=92.24 E-value=0.63 Score=41.46 Aligned_cols=72 Identities=22% Similarity=0.403 Sum_probs=54.7
Q ss_pred CCCcceeeeccceEEeecCCCCCCceeeEEeccch--hhhcCCCceeEEEecccc-eEEEEecCChhhhhHHHHhe
Q psy3407 564 AWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFS--QVYDKSRPYTFKVNFNPY-SFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 636 (749)
.|..-|+-|.++.|.+-..+++.+...+|.-.+.. .+-+..+++.|++. .|- ...+|+|.++.++-+|+..|
T Consensus 19 ~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~k~~~F~I~-~~~~~~~~f~a~s~~e~~~Wi~ai 93 (96)
T cd01260 19 KWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGFTIESAKEVKKKYAFKVC-HPVYKSFYFAAETLDDLSQWVNHL 93 (96)
T ss_pred CceeEEEEEECCEEEEECCCCCCccceEEEccCCEEEEchhcCCceEEEEC-CCCCcEEEEEeCCHHHHHHHHHHH
Confidence 79999999999999988888776666666543321 12245589999998 444 77789999999999999876
No 49
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=92.10 E-value=0.3 Score=58.41 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=45.8
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeT 170 (749)
..+.|++|+.++.|++|+.+ +++++||.+.+ .+|....+.| |.||||+|.+.-
T Consensus 168 ~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A-kaVVLATGG~g~ 221 (657)
T PRK08626 168 AIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVA-KATLIATGGYGR 221 (657)
T ss_pred HHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccC
Confidence 45678999999999999987 68999999986 4788888899 899999998764
No 50
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=92.01 E-value=0.42 Score=55.24 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=44.9
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
.+..+++|++++.|++|+.+ +++++||.+...+|+...++| +.||||+|.+....
T Consensus 200 ~~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g~~~~i~a-~~VVlAtGG~~~n~ 254 (506)
T PRK06481 200 VQERKIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISS-KAVVVTTGGFGANK 254 (506)
T ss_pred HHHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCCeEEEEec-CeEEEeCCCcccCH
Confidence 44568999999999999876 578999998764556677888 89999999877543
No 51
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=91.95 E-value=0.95 Score=52.02 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=42.8
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT 170 (749)
+++|++|+.++.|++|+.+ +++++||...+ .+....++| +.||||+|+...
T Consensus 140 ~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~-~~~~~~i~A-~~VVlAtGG~~~ 190 (488)
T TIGR00551 140 NHPNIRIIEGENALDLLIE-TGRVVGVWVWN-RETVETCHA-DAVVLATGGAGK 190 (488)
T ss_pred hcCCcEEEECeEeeeeecc-CCEEEEEEEEE-CCcEEEEEc-CEEEECCCcccC
Confidence 3479999999999999887 57899999876 355567888 999999999864
No 52
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=91.80 E-value=0.5 Score=42.95 Aligned_cols=90 Identities=26% Similarity=0.369 Sum_probs=62.1
Q ss_pred ccccCceeEEecCCCCCCcceeeeccceEEeecCCCCCCceeeEEeccch--hhhc----CCCceeEEEecccceEEEEe
Q psy3407 549 VFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFS--QVYD----KSRPYTFKVNFNPYSFVLFA 622 (749)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~ 622 (749)
|..+|-|.-+=.-...|..=|+-|+++.|..-...+.++.+.+|....-+ ..=| ..+|+.|.+-- |---..|.
T Consensus 2 v~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t-~~rt~~~~ 80 (100)
T cd01233 2 VSKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDKDPVERGVINLSTARVEHSEDQAAMVKGPNTFAVCT-KHRGYLFQ 80 (100)
T ss_pred cceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCCCccEeeEEEecccEEEEccchhhhcCCCcEEEEEC-CCCEEEEE
Confidence 44566666554445679999999999999987777666656666544221 1111 13689999943 44556788
Q ss_pred cCChhhhhHHHHheeeE
Q psy3407 623 APDESQLFDWLQDIMIS 639 (749)
Q Consensus 623 ~~~~~~~~~~~~~~~~~ 639 (749)
|++|.+.-+|++.|-.+
T Consensus 81 A~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 81 ALSDKEMIDWLYALNPL 97 (100)
T ss_pred cCCHHHHHHHHHHhhhh
Confidence 99999999999987543
No 53
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.67 E-value=0.43 Score=56.31 Aligned_cols=53 Identities=11% Similarity=0.297 Sum_probs=44.8
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeT 170 (749)
...+++++.++.|++|+.+++++++||.+.+. +|....++| |-||||+|.+..
T Consensus 159 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 212 (591)
T PRK07057 159 VAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEA-KTTLFATGGAGR 212 (591)
T ss_pred HhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEEC-CeEEECCCCccc
Confidence 45789999999999999875679999998763 577677888 899999998874
No 54
>PRK07512 L-aspartate oxidase; Provisional
Probab=91.30 E-value=0.34 Score=56.16 Aligned_cols=53 Identities=23% Similarity=0.416 Sum_probs=43.2
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT 170 (749)
+.++++++++.++.|++|+.+ +++++||.+.+ ++....++| +.||||+|.+..
T Consensus 146 ~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~-~~~~~~i~A-k~VVLATGG~~~ 198 (513)
T PRK07512 146 VRATPSITVLEGAEARRLLVD-DGAVAGVLAAT-AGGPVVLPA-RAVVLATGGIGG 198 (513)
T ss_pred HHhCCCCEEEECcChhheeec-CCEEEEEEEEe-CCeEEEEEC-CEEEEcCCCCcC
Confidence 334568999999999999876 57999999876 555567888 899999999863
No 55
>KOG2404|consensus
Probab=91.18 E-value=0.22 Score=55.09 Aligned_cols=52 Identities=31% Similarity=0.512 Sum_probs=44.9
Q ss_pred cCCC-eEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC
Q psy3407 117 FREN-LIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 117 ~r~N-LtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT 170 (749)
+.|+ ++|+++++|.+|+-+ .+++.||+|.|.+|+...+.+ ..||+|.|.+.-
T Consensus 155 ~~pe~~ki~~nskvv~il~n-~gkVsgVeymd~sgek~~~~~-~~VVlatGGf~y 207 (477)
T KOG2404|consen 155 ENPELVKILLNSKVVDILRN-NGKVSGVEYMDASGEKSKIIG-DAVVLATGGFGY 207 (477)
T ss_pred cChHHHhhhhcceeeeeecC-CCeEEEEEEEcCCCCccceec-CceEEecCCcCc
Confidence 4455 799999999999944 789999999998898888887 889999998874
No 56
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.12 E-value=0.58 Score=55.14 Aligned_cols=58 Identities=19% Similarity=0.328 Sum_probs=46.3
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCC---CcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCC
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSK---LKAYGVEYIN-SQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~g---grAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeT 170 (749)
|...+...|++|+.++.|++|+.+++ ++++||...+ .+|..+.++| |.||||+|....
T Consensus 146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 207 (583)
T PRK08205 146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHA-KAVVFATGGSGR 207 (583)
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEe-CeEEECCCCCcc
Confidence 33334567899999999999998742 7999999865 3677778889 899999998874
No 57
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.09 E-value=0.53 Score=56.03 Aligned_cols=50 Identities=16% Similarity=0.314 Sum_probs=42.4
Q ss_pred CeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCCh
Q psy3407 120 NLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSP 171 (749)
Q Consensus 120 NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTP 171 (749)
|++|+.++.|++|+.+ +++++||...+. +|....++| |.||||+|.++..
T Consensus 165 ~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~~ 215 (626)
T PRK07803 165 RIKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEA-PAVVLATGGIGKS 215 (626)
T ss_pred ceEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEc-CeEEECCCcccCC
Confidence 4999999999999987 579999988653 677778899 8999999987643
No 58
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=91.06 E-value=0.5 Score=60.20 Aligned_cols=53 Identities=25% Similarity=0.475 Sum_probs=45.3
Q ss_pred CCCeEEEcccEEEEEEeCC-----C---CcEEEEEEEec---CCeEEEEEeccEEEEccCCCCCh
Q psy3407 118 RENLIILKNTEVIKILIDS-----K---LKAYGVEYINS---QGKICHVNSTREVILSAGAVGSP 171 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~-----g---grAtGV~y~d~---~G~~~~V~ArKeVILAAGAIeTP 171 (749)
+.+++|++++.|++|+.++ + ++|+||.+.+. +|+...++| |-||||+|.++.-
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N 622 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSND 622 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccC
Confidence 3689999999999999873 2 38999999875 788888999 8999999998863
No 59
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=91.05 E-value=0.55 Score=55.52 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=51.1
Q ss_pred Ccccchhhhhhhh---hccCCCeEEEcccEEEEEEeC-CC--CcEEEEEEEec-CCeEEEEEeccEEEEccCCCC
Q psy3407 102 GLRCSTSKAFLEP---AKFRENLIILKNTEVIKILID-SK--LKAYGVEYINS-QGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 102 GaR~Saa~ayL~p---a~~r~NLtIlT~a~V~RIl~d-~g--grAtGV~y~d~-~G~~~~V~ArKeVILAAGAIe 169 (749)
-.|++-..+++.| .++..|+++++++.|++|+++ ++ ++|+||++... .++...+.+++.|||+.|++.
T Consensus 219 ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 219 FTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred CCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 3455555556666 346779999999999999996 33 79999999752 234456778899999999874
No 60
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=90.61 E-value=0.54 Score=54.81 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=42.4
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEEEEEEEe--cC------------CeEEEEEeccEEEEccCCCCC-hHHH
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAYGVEYIN--SQ------------GKICHVNSTREVILSAGAVGS-PQLL 174 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d--~~------------G~~~~V~ArKeVILAAGAIeT-PrLL 174 (749)
.++++|++++.|++|+.+ +++|+||...+ .+ +....++| |-||||+|.++. +.++
T Consensus 164 ~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~A-kaVILATGGf~~n~em~ 233 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRA-QAVIVTSGGIGGNHELV 233 (549)
T ss_pred hCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEec-CEEEEeCCCcccCHHHH
Confidence 457999999999999987 68999999742 11 23467888 889999999884 4443
No 61
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=90.16 E-value=0.74 Score=54.65 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=42.9
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIe 169 (749)
+.+++|++|+.++.|.+|+.+ +++++||...+. +|....++| +.||||+|++.
T Consensus 142 a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~ 195 (608)
T PRK06854 142 AKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKA-KAVIVATGGAA 195 (608)
T ss_pred HHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEEC-CEEEECCCchh
Confidence 334567999999999999887 479999987543 566677888 89999999875
No 62
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=89.95 E-value=1.5 Score=54.39 Aligned_cols=49 Identities=27% Similarity=0.479 Sum_probs=42.7
Q ss_pred CCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCC
Q psy3407 119 ENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 119 ~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIe 169 (749)
.++++.+++.+.+|+.+ +++++||...+. +|+.+.++| |.||||+|.++
T Consensus 156 ~~i~~~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g 205 (897)
T PRK13800 156 ERIRIENRLMPVRVLTE-GGRAVGAAALNTRTGEFVTVGA-KAVILATGPCG 205 (897)
T ss_pred CCcEEEeceeeEEEEee-CCEEEEEEEEecCCCcEEEEEC-CEEEECCCccc
Confidence 47999999999999887 679999998763 688888999 99999999876
No 63
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.90 E-value=0.76 Score=53.99 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=44.2
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeT 170 (749)
.+..|++++.++.|++|+.+ +++++||.+.+. +|+...++| |.||||+|+...
T Consensus 148 ~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~~ 201 (577)
T PRK06069 148 LRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQA-KAGIIATGGAGR 201 (577)
T ss_pred HhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEEC-CcEEEcCchhcc
Confidence 34478999999999999987 579999998763 676678888 899999999863
No 64
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=89.79 E-value=1 Score=51.91 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=49.6
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
+.+.|++|++++.|+.|+.+ +++++||++.+. +|+...++| +.||.|||+- +..|+...|+
T Consensus 138 A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~~~g~ 199 (516)
T TIGR03377 138 AQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEA-QVVINAAGIW-AGRIAEYAGL 199 (516)
T ss_pred HHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEc-CEEEECCCcc-hHHHHHhcCC
Confidence 34568999999999999886 578999999763 566778999 9999999965 7788776664
No 65
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.30 E-value=1.1 Score=42.64 Aligned_cols=75 Identities=20% Similarity=0.377 Sum_probs=55.9
Q ss_pred CCCCCcceeeeccceEEeecCCC----------CCCceeeEEec-cchhhhcCCCceeEEEecccceEEEEecCChhhhh
Q psy3407 562 KSAWTPGFVNLQNGILTVKEAPN----------SPKNISVIQCH-SFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLF 630 (749)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (749)
+..|.+-|.-|.++.|.+-.-.. .-.-|++-+|- .....|.| |++.|++.-.--.-.||-|+++.++-
T Consensus 23 ~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~K-r~~VF~L~~~~g~~~lfqA~~~ee~~ 101 (117)
T cd01230 23 KRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSK-KPHVFRLRTADWREFLFQTSSLKELQ 101 (117)
T ss_pred CCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccC-CCcEEEEEcCCCCEEEEECCCHHHHH
Confidence 34688889999888887743322 12446666666 55666654 78899998766688899999999999
Q ss_pred HHHHhee
Q psy3407 631 DWLQDIM 637 (749)
Q Consensus 631 ~~~~~~~ 637 (749)
.|++.|-
T Consensus 102 ~Wi~~I~ 108 (117)
T cd01230 102 SWIERIN 108 (117)
T ss_pred HHHHHHH
Confidence 9999873
No 66
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=88.64 E-value=0.59 Score=45.99 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=39.8
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcC
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSG 178 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SG 178 (749)
.||...+++-+++++.++.|+++..+++ + .-|++. +| ++++| +.||||.|....|+.+..-|
T Consensus 86 ~yl~~~~~~~~l~i~~~~~V~~v~~~~~-~-w~v~~~--~~--~~~~a-~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 86 DYLQEYAERFGLEIRFNTRVESVRRDGD-G-WTVTTR--DG--RTIRA-DRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHHTTGGEETS--EEEEEEETT-T-EEEEET--TS---EEEE-EEEEE---SSCSB---S-TT
T ss_pred HHHHHHHhhcCcccccCCEEEEEEEecc-E-EEEEEE--ec--ceeee-eeEEEeeeccCCCCcccccc
Confidence 4777767777899999999999999843 3 445553 45 56778 99999999999999988765
No 67
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=88.62 E-value=0.99 Score=53.83 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=49.3
Q ss_pred ccCCCeEEEcccEEEEEEeCC-CCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhcC
Q psy3407 116 KFRENLIILKNTEVIKILIDS-KLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLSG 178 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~-ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~SG 178 (749)
+.+.+++|+.++.|++|..++ +++++||++.+. +|+.+.++| +.||+|||+. +.+|+...|
T Consensus 242 A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a-~~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 242 AALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYA-KVVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEe-CEEEECCCHh-HHHHHHhcc
Confidence 345689999999999998874 478999999774 566667899 9999999976 677777665
No 68
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=88.06 E-value=1.2 Score=50.06 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=44.3
Q ss_pred hhccCCCeEEEcccEEEEEEeCC-CCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHh
Q psy3407 114 PAKFRENLIILKNTEVIKILIDS-KLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~-ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL 175 (749)
...++.+.+|++++.|++|+.++ +++++||...+ ++ ..++| |.||||+|.++.-+=|+
T Consensus 131 ~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~-~~--~~i~a-k~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 131 SSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTV-GT--HRITT-QALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcC-Cc--EEEEc-CEEEEcCCCcccCHHHH
Confidence 33456789999999999998863 57899998742 22 46778 89999999887755444
No 69
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=88.01 E-value=1.2 Score=53.22 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=42.5
Q ss_pred CCCeEEEcccEEEEEEeCCC--CcEEEEEEEec-CCeEEEEEeccEEEEccCCCC
Q psy3407 118 RENLIILKNTEVIKILIDSK--LKAYGVEYINS-QGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~g--grAtGV~y~d~-~G~~~~V~ArKeVILAAGAIe 169 (749)
..+.+|+.++.|++|+.+++ ++++||...+. +|+.+.++| |.||||+|.+.
T Consensus 138 ~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 191 (614)
T TIGR02061 138 NALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKA-KTVIVAAGGAV 191 (614)
T ss_pred hCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEEC-CEEEECCCccc
Confidence 34579999999999998742 79999998663 677778888 89999999885
No 70
>PRK07804 L-aspartate oxidase; Provisional
Probab=87.39 E-value=1.3 Score=51.86 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=43.0
Q ss_pred hhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe----cCCeEEEEEeccEEEEccCCCCC
Q psy3407 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYIN----SQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d----~~G~~~~V~ArKeVILAAGAIeT 170 (749)
...++.+++|+.++.|++|+.+++++++||.+.+ .++....++| |.||||+|....
T Consensus 152 ~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~A-k~VIlATGG~~~ 211 (541)
T PRK07804 152 AAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHA-PAVVLATGGLGQ 211 (541)
T ss_pred HHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEc-CeEEECCCCCCC
Confidence 3344556999999999999987557999999863 1222457888 999999999763
No 71
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=87.37 E-value=2 Score=35.87 Aligned_cols=87 Identities=20% Similarity=0.342 Sum_probs=57.1
Q ss_pred ccCceeEEec-CCCCCCcceeeeccceEEeecCCCC-----C-CceeeEEeccchhhhcC---CCceeEEEecccceEEE
Q psy3407 551 RSGNLMYKIN-DKSAWTPGFVNLQNGILTVKEAPNS-----P-KNISVIQCHSFSQVYDK---SRPYTFKVNFNPYSFVL 620 (749)
Q Consensus 551 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 620 (749)
..|-|+.+-. ....|.+-|+-|.++.|..-..+.. + .-|.+-.| ..+..=+. ..++.|.+-...---.+
T Consensus 3 ~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~~~ 81 (102)
T smart00233 3 KEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRSYL 81 (102)
T ss_pred eeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCceEE
Confidence 4566665554 5778999999999998887554432 1 22333333 33322222 36889998876655677
Q ss_pred EecCChhhhhHHHHheee
Q psy3407 621 FAAPDESQLFDWLQDIMI 638 (749)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~ 638 (749)
|.++++...-+|++.|..
T Consensus 82 f~~~s~~~~~~W~~~i~~ 99 (102)
T smart00233 82 LQAESEEEREEWVDALRK 99 (102)
T ss_pred EEcCCHHHHHHHHHHHHH
Confidence 888999999999887653
No 72
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=87.17 E-value=3.7 Score=34.25 Aligned_cols=84 Identities=18% Similarity=0.307 Sum_probs=58.8
Q ss_pred cCceeEEecCC----CCCCcceeeeccceEEeecCCCCCCce-eeEEeccchhhhcC----CCceeEEEeccc--ceEEE
Q psy3407 552 SGNLMYKINDK----SAWTPGFVNLQNGILTVKEAPNSPKNI-SVIQCHSFSQVYDK----SRPYTFKVNFNP--YSFVL 620 (749)
Q Consensus 552 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~ 620 (749)
+|.+.|+-.++ ..|.+.++-|.++.|..-......+.. .++..++.. |-.- .+++.|.+...+ .....
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~~~~~~F~i~~~~~~~~~~~ 80 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGSDDPNCFAIVTKDRGRRVFV 80 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCCCCCCceEEEECCCCCcEEEE
Confidence 47777777775 799999999999888775554432221 133333333 2222 357999998885 88889
Q ss_pred EecCChhhhhHHHHhe
Q psy3407 621 FAAPDESQLFDWLQDI 636 (749)
Q Consensus 621 ~~~~~~~~~~~~~~~~ 636 (749)
|.++++.++-.|+..+
T Consensus 81 ~~~~~~~~~~~W~~al 96 (99)
T cd00900 81 FQADSEEEAQEWVEAL 96 (99)
T ss_pred EEcCCHHHHHHHHHHH
Confidence 9999999999998765
No 73
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=87.05 E-value=1.3 Score=51.70 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=48.3
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
.+.++++++++.|+.|..+ +++++||++.+. +|+...++| +.||+|||+- +.+|+.+.|+
T Consensus 160 ~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A-~~VVnAaG~w-a~~l~~~~g~ 220 (546)
T PRK11101 160 KEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHA-PVVVNAAGIW-GQHIAEYADL 220 (546)
T ss_pred HhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEEC-CEEEECCChh-HHHHHHhcCC
Confidence 4568999999999999887 578999999763 466678999 8999999965 6777766553
No 74
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=86.65 E-value=2.6 Score=49.00 Aligned_cols=67 Identities=24% Similarity=0.232 Sum_probs=46.0
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCChHHHhhcCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGSPQLLMLSGIG 180 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIG 180 (749)
+...+.+.++++|+.++.|+.|..++++++ .|...+ .+|+..+++| +.||+|||+ .+.+|+..+|+.
T Consensus 189 L~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A-~~VVvaAGg-~s~~L~~~~Gi~ 256 (494)
T PRK05257 189 LVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRA-KFVFIGAGG-GALPLLQKSGIP 256 (494)
T ss_pred HHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEc-CEEEECCCc-chHHHHHHcCCC
Confidence 333333445699999999999987644443 344332 2454446888 899999998 577788888864
No 75
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=85.56 E-value=3.3 Score=47.61 Aligned_cols=68 Identities=29% Similarity=0.290 Sum_probs=49.3
Q ss_pred hhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCChHHHhhcCCCcccc
Q psy3407 109 KAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGSPQLLMLSGIGIQKH 184 (749)
Q Consensus 109 ~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIGpas~ 184 (749)
.+++..+. ..|.+|..++.|++|..+++| |.+.. .+|++. ++| |-||.||| ..+-+|+.++|+.+...
T Consensus 157 ~~l~e~a~-~~g~~i~ln~eV~~i~~~~dg----~~~~~~~~g~~~-~~a-k~Vin~AG-l~Ad~la~~~g~~~~~~ 225 (429)
T COG0579 157 RALAEEAQ-ANGVELRLNTEVTGIEKQSDG----VFVLNTSNGEET-LEA-KFVINAAG-LYADPLAQMAGIPEDFK 225 (429)
T ss_pred HHHHHHHH-HcCCEEEecCeeeEEEEeCCc----eEEEEecCCcEE-EEe-eEEEECCc-hhHHHHHHHhCCCcccc
Confidence 33444333 449999999999999987544 33332 267666 889 99999998 46888999999877533
No 76
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=85.51 E-value=2 Score=41.30 Aligned_cols=76 Identities=24% Similarity=0.396 Sum_probs=57.2
Q ss_pred cCCCCCCcceeeeccceEEeecCCCC-----CC-ceeeEEeccchhhh-----cCCCceeEEEec---------------
Q psy3407 560 NDKSAWTPGFVNLQNGILTVKEAPNS-----PK-NISVIQCHSFSQVY-----DKSRPYTFKVNF--------------- 613 (749)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~--------------- 613 (749)
.....|.+=+.-|.++.|..+..|.. |. +|.+-.|.. +.+- ++.||+||++..
T Consensus 14 ~~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~-~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~ 92 (122)
T cd01263 14 SGFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTS-SEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQ 92 (122)
T ss_pred CCCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcc-cccccCChhhcCCCCeEEEEEecccccccccceeec
Confidence 45678999999999999998876664 33 346666766 3342 789999999953
Q ss_pred ----ccceEEEEecCChhhhhHHHHhe
Q psy3407 614 ----NPYSFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 614 ----~~~~~~~~~~~~~~~~~~~~~~~ 636 (749)
..-.|++|+|-.+..+-.|+.-|
T Consensus 93 ~~~~~~r~~~~lsaDt~eer~~W~~ai 119 (122)
T cd01263 93 CRRGIERLRVMLSADTKEERQTWLSLL 119 (122)
T ss_pred cCCceeEEEEEEecCCHHHHHHHHHHH
Confidence 34568899998888899998764
No 77
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.97 E-value=5.6 Score=34.37 Aligned_cols=73 Identities=23% Similarity=0.399 Sum_probs=49.6
Q ss_pred CCCCCcceeeeccceEEeecCCCC--CCc---eeeEEeccchhhhcC-CCceeEEEecccceEEEEecCChhhhhHHHHh
Q psy3407 562 KSAWTPGFVNLQNGILTVKEAPNS--PKN---ISVIQCHSFSQVYDK-SRPYTFKVNFNPYSFVLFAAPDESQLFDWLQD 635 (749)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (749)
...|.+=|+-|..|.|.....++. ... |.+-.|+- ..+=+. .+++.|.+.-+. ...+|.|+++.++-.|+..
T Consensus 13 ~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~v-~~~~~~~~~~~~f~i~~~~-~~~~f~a~s~~~~~~Wi~a 90 (94)
T cd01250 13 NKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCTV-RHNGKQPDRRFCFEVISPT-KTWHFQADSEEERDDWISA 90 (94)
T ss_pred CCCceEEEEEEeCCeEEEEcCCcccccccceEEeccceEE-ecCccccCCceEEEEEcCC-cEEEEECCCHHHHHHHHHH
Confidence 467999999999999888766654 122 22222432 222222 378999997655 7778889999999999876
Q ss_pred e
Q psy3407 636 I 636 (749)
Q Consensus 636 ~ 636 (749)
|
T Consensus 91 l 91 (94)
T cd01250 91 I 91 (94)
T ss_pred H
Confidence 5
No 78
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=84.92 E-value=1.3 Score=52.00 Aligned_cols=61 Identities=23% Similarity=0.328 Sum_probs=50.8
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhcCCCc
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLSGIGI 181 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIGp 181 (749)
...+.++++.+.|++++.+ ++ ++||++.|. +|+++.++| +.||-|||.- +-+++...+..+
T Consensus 175 ~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira-~~VVNAaGpW-~d~i~~~~~~~~ 236 (532)
T COG0578 175 AEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRA-RAVVNAAGPW-VDEILEMAGLEQ 236 (532)
T ss_pred Hhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEc-CEEEECCCcc-HHHHHHhhcccC
Confidence 4567999999999999998 45 999999986 689999999 9999999965 556777766544
No 79
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=84.78 E-value=2 Score=49.23 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=50.5
Q ss_pred CcccchhhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhc
Q psy3407 102 GLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLS 177 (749)
Q Consensus 102 GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~S 177 (749)
|.|...+ |..+.++.+.+++.++.|.++.++ ++++++|... +++...++| +.||||+|+.-|..|+...
T Consensus 262 G~RL~~a---L~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~--~g~~~~l~A-D~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 262 GIRLEEA---LKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTR--NHRDIPLRA-DHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHH---HHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEec--CCccceEEC-CEEEEccCCCcCHHHHhhc
Confidence 5555432 223334567899999999999987 5788887653 443457888 8899999999888886654
No 80
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=83.98 E-value=3.8 Score=33.84 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=51.7
Q ss_pred CceeEEecCC-CCCCcceeeeccceEEeecCCCC---CCceeeEEeccchhhhcCC----CceeEEEecccceEEEEecC
Q psy3407 553 GNLMYKINDK-SAWTPGFVNLQNGILTVKEAPNS---PKNISVIQCHSFSQVYDKS----RPYTFKVNFNPYSFVLFAAP 624 (749)
Q Consensus 553 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 624 (749)
|.|..+-..+ .-|.+-++-|.++.|..-..+.. ..-..+|.... .+|.... .+++|.+-+.+=.-..|.++
T Consensus 3 G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~~ 81 (96)
T cd00821 3 GYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDSGRKNCFEIRTPDGRSYLLQAE 81 (96)
T ss_pred chhhhhhChhhCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcCCCCcEEEEecCCCcEEEEEeC
Confidence 4444444333 67888888887776665544433 12223333333 2232222 58999998877456667788
Q ss_pred ChhhhhHHHHhee
Q psy3407 625 DESQLFDWLQDIM 637 (749)
Q Consensus 625 ~~~~~~~~~~~~~ 637 (749)
++.+.-+|+..|.
T Consensus 82 s~~~~~~W~~~l~ 94 (96)
T cd00821 82 SEEEREEWIEALQ 94 (96)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998763
No 81
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=83.66 E-value=3.4 Score=47.96 Aligned_cols=68 Identities=24% Similarity=0.235 Sum_probs=51.3
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhcCCCc
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLSGIGI 181 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIGp 181 (749)
++.-+.+++|++|..++.|+.|.-.+++ -.-|.+.+. +|....++| |-|+|.||+- +=.||+.|||..
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg-~W~v~~~~~~~~~~~~v~a-~FVfvGAGG~-aL~LLqksgi~e 255 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDG-RWEVKVKDLKTGEKREVRA-KFVFVGAGGG-ALPLLQKSGIPE 255 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCC-CEEEEEEecCCCCeEEEEC-CEEEECCchH-hHHHHHHcCChh
Confidence 4444456779999999999999887433 344555443 678889999 9999999974 667999999843
No 82
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=83.53 E-value=5.8 Score=35.78 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=49.2
Q ss_pred CCCCCcceeeeccceEEeecCCCCC--Cc---eeeEEeccc-hhhhc-CCCceeEEEecccceEEEEecCChhhhhHHHH
Q psy3407 562 KSAWTPGFVNLQNGILTVKEAPNSP--KN---ISVIQCHSF-SQVYD-KSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQ 634 (749)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (749)
...|..=|+-|.++.|.+-.-+... +. +.+--++.. ..+.+ +.+++.|.+....-...+|.|+++..+-+|++
T Consensus 20 ~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~ 99 (104)
T cd01253 20 NRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVR 99 (104)
T ss_pred CCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHH
Confidence 4578888899998888765433221 11 111111221 23323 35789999986665778999999999999998
Q ss_pred he
Q psy3407 635 DI 636 (749)
Q Consensus 635 ~~ 636 (749)
.|
T Consensus 100 aL 101 (104)
T cd01253 100 AL 101 (104)
T ss_pred HH
Confidence 65
No 83
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=83.17 E-value=2.2 Score=50.48 Aligned_cols=132 Identities=16% Similarity=0.056 Sum_probs=78.1
Q ss_pred HHHHHcCCCCCCCCCCCC---CccccccccccCCCcccch-hhhhhhh-hccCCCeEEEcccEEEEEEeCCCCcEEEEEE
Q psy3407 71 AAGKELKIGTMYDINRDQ---YIGFGPFDTTTRYGLRCST-SKAFLEP-AKFRENLIILKNTEVIKILIDSKLKAYGVEY 145 (749)
Q Consensus 71 ~A~~eLG~~~~~D~N~g~---~~G~~~c~~~c~~GaR~Sa-a~ayL~p-a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y 145 (749)
.-+++.|.+......+.- +.|......+|..+.|-.. ....|.. ..+..++++..+..|++|+.++++++.||..
T Consensus 99 ~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~ 178 (562)
T COG1053 99 DELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVA 178 (562)
T ss_pred HHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEE
Confidence 344667887754333311 1221111235555555432 2222222 3344778999999999999886566999998
Q ss_pred Eec-CCeEEEEEeccEEEEccCCCC-----ChHHHhhcCCCccccccccCcceeecCCCCCCccccccc
Q psy3407 146 INS-QGKICHVNSTREVILSAGAVG-----SPQLLMLSGIGIQKHLKEKNITVIKDLPVGENLQDHVCF 208 (749)
Q Consensus 146 ~d~-~G~~~~V~ArKeVILAAGAIe-----TPrLLL~SGIGpas~L~~~GIpvVaDLPVGRNLqDHp~v 208 (749)
.+. +|+.+.++| |.||+|.|+.+ |+-.....|-|- .-....|.+ +-..++-|.||..
T Consensus 179 ~~~~~g~~~~~~a-kavilaTGG~g~~~~~~t~~~~~tGdG~-~ma~~aGa~----l~dme~~Q~hpt~ 241 (562)
T COG1053 179 RDLRTGELYVFRA-KAVILATGGAGRLYPYTTNAHIGTGDGV-AMAYRAGAP----LIDMEFVQFHPTG 241 (562)
T ss_pred EEecCCcEEEEec-CcEEEccCCceEEEeccCCccccCCcHH-HHHHhcCCc----ccCCCccccccce
Confidence 875 688888999 99999999988 444444422211 111233432 1156688888865
No 84
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=81.73 E-value=0.45 Score=53.78 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=0.0
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
.|...++..|++|+.++.|..++.+ +++++||.+.++.| ..+++| +.||-|.| ...|+-++|+
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g-~~~i~A-~~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSG-RKEIRA-KVFIDATG---DGDLAALAGA 157 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc-cccccccccccccc-cccccc-cccccccc---cccccccccc
Confidence 4545456689999999999999998 68999999987566 788999 99999998 3577777764
No 85
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=81.38 E-value=3.4 Score=47.21 Aligned_cols=59 Identities=20% Similarity=0.102 Sum_probs=44.3
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
.|....++.+.++++++.|.++..+ ++++++|. .. +|+...++| +.||||+|.+.+.-|
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~-~~-~g~~~~i~A-D~VVLAtGrf~s~GL 322 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVW-TR-NHGDIPLRA-RHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEE-ee-CCceEEEEC-CEEEEeCCCcccCce
Confidence 3444455678999999999999887 45676665 22 676778888 899999998765544
No 86
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=79.98 E-value=3.5 Score=43.76 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=39.7
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec----CC---eEEEEEeccEEEEccCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS----QG---KICHVNSTREVILSAGA 167 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~----~G---~~~~V~ArKeVILAAGA 167 (749)
+.+.|.+|+.++.|+.|..++++++.||...+. .| ....++| |.||+|+|.
T Consensus 114 A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~A-k~VI~ATG~ 171 (257)
T PRK04176 114 AIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEA-KAVVDATGH 171 (257)
T ss_pred HHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEc-CEEEEEeCC
Confidence 345689999999999998875558999987531 12 3467889 999999994
No 87
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=79.94 E-value=4.4 Score=46.04 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=38.4
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
+.+.+|++|+ +..|+.|..+ ++++.||... +|. .+.| +.||||+|++....
T Consensus 105 l~~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~--~g~--~~~a-~~vVlaTGtfl~G~ 155 (392)
T PF01134_consen 105 LESHPNLTII-QGEVTDLIVE-NGKVKGVVTK--DGE--EIEA-DAVVLATGTFLNGC 155 (392)
T ss_dssp HHTSTTEEEE-ES-EEEEEEC-TTEEEEEEET--TSE--EEEE-CEEEE-TTTGBTSE
T ss_pred HhcCCCeEEE-EcccceEEec-CCeEEEEEeC--CCC--EEec-CEEEEecccccCce
Confidence 3457999997 6799999998 6899998874 565 5777 89999999944333
No 88
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=79.58 E-value=5.9 Score=45.88 Aligned_cols=61 Identities=30% Similarity=0.263 Sum_probs=43.4
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCChHHHhhcCCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGSPQLLMLSGIG 180 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIG 180 (749)
++.|++|+.++.|++|..++++.+ .|...+ .+|...+++| +.||+|||+ .+.+|+...|+.
T Consensus 189 ~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A-~~VV~AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 189 VQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNT-RFVFVGAGG-GALPLLQKSGIP 250 (483)
T ss_pred HhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEEC-CEEEECCCc-chHHHHHHcCCC
Confidence 445899999999999987533332 233332 2454456888 999999997 477888888865
No 89
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=79.39 E-value=2.8 Score=47.83 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=41.8
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
.++.|.+|++++.|++|+.+ +++++||...+. .|....+.| +.||+++..-.+.+||
T Consensus 242 ~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~a-d~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 242 LKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKA-DDVVANLPPQSLLELL 299 (492)
T ss_pred HHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEEC-CEEEECCCHHHHHHhc
Confidence 34567899999999999998 568899987652 232346778 8899998875555533
No 90
>KOG0042|consensus
Probab=79.20 E-value=1.1 Score=52.53 Aligned_cols=68 Identities=22% Similarity=0.318 Sum_probs=55.6
Q ss_pred ccCCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCC
Q psy3407 98 TTRYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 98 ~c~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIe 169 (749)
+..+.+|...+.+ |. +.|.+++++-+..|.+++.++++++.|++++|. .|+++.++| |.||=|+|-+.
T Consensus 219 GQ~nDaRmnl~vA-lT--A~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~A-k~VVNATGpfs 287 (680)
T KOG0042|consen 219 GQHNDARMNLAVA-LT--AARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRA-KVVVNATGPFS 287 (680)
T ss_pred CCCchHHHHHHHH-HH--HHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEE-EEEEeCCCCcc
Confidence 3445677765543 21 347889999999999999997789999999997 799999999 99999999874
No 91
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=78.89 E-value=5.9 Score=46.24 Aligned_cols=53 Identities=28% Similarity=0.347 Sum_probs=41.3
Q ss_pred eEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCCCc
Q psy3407 121 LIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIGI 181 (749)
Q Consensus 121 LtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIGp 181 (749)
++|.+++.|+.|..+ ++....|+. .+| .++| +.||+|||+- |.+|+..+|++.
T Consensus 232 v~i~~~t~V~~I~~~-~~~~~~V~T--~~G---~i~A-~~VVvaAG~~-S~~La~~~Gi~~ 284 (497)
T PTZ00383 232 ISINLNTEVLNIERS-NDSLYKIHT--NRG---EIRA-RFVVVSACGY-SLLFAQKMGYGL 284 (497)
T ss_pred EEEEeCCEEEEEEec-CCCeEEEEE--CCC---EEEe-CEEEECcChh-HHHHHHHhCCCC
Confidence 899999999999876 344555543 245 4788 8999999975 888999999854
No 92
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=78.65 E-value=3.3 Score=46.69 Aligned_cols=49 Identities=8% Similarity=0.092 Sum_probs=37.2
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCe-EEEEEeccEEEEccCC
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAYGVEYINSQGK-ICHVNSTREVILSAGA 167 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~-~~~V~ArKeVILAAGA 167 (749)
..+.+|++++.|++|..+++++++||++.+..|+ .+.+.| +.||+++..
T Consensus 225 ~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a-~~VI~a~p~ 274 (453)
T TIGR02731 225 SRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTA-DAYVSAMPV 274 (453)
T ss_pred hcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEEC-CEEEEcCCH
Confidence 4467999999999998765678999998653332 235777 889998864
No 93
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=78.57 E-value=8.2 Score=45.16 Aligned_cols=69 Identities=23% Similarity=0.161 Sum_probs=46.5
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCChHHHhhcCCCc
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGSPQLLMLSGIGI 181 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIGp 181 (749)
+++..+.++++++|++++.|+.|..++++..+ |.+.+ ..|+...++| +.||+|||+ .+-+|+..+|+.+
T Consensus 189 aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~A-d~VV~AAGa-wS~~La~~~Gi~~ 258 (497)
T PRK13339 189 KLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVA-DYVFIGAGG-GAIPLLQKSGIPE 258 (497)
T ss_pred HHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEc-CEEEECCCc-chHHHHHHcCCCc
Confidence 34443334568999999999999876233332 33322 2443346788 999999997 5688888888743
No 94
>PLN02661 Putative thiazole synthesis
Probab=75.77 E-value=5.9 Score=44.53 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=42.0
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe------cCC----eEEEEEeccEEEEccCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYIN------SQG----KICHVNSTREVILSAGA 167 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d------~~G----~~~~V~ArKeVILAAGA 167 (749)
.+..+.+++|++|+.++.|+.|+.+ ++++.||.+.. ..+ ....++| |.||+|+|.
T Consensus 178 Li~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~A-kaVVlATGh 242 (357)
T PLN02661 178 IMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEA-KVVVSSCGH 242 (357)
T ss_pred HHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEEC-CEEEEcCCC
Confidence 4444566789999999999999998 57999998632 111 2346888 999999994
No 95
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=75.55 E-value=4.1 Score=46.74 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=43.1
Q ss_pred hhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHh
Q psy3407 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL 175 (749)
...++.+.+|++++.|.+|+.+ ++++.||... +|+ .+.| +.||+++|...|=+.|+
T Consensus 237 ~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~--~g~--~~~a-d~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 237 KGLEKHGGQIRYRARVTKIILE-NGKAVGVKLA--DGE--KIYA-KRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeC--CCC--EEEc-CEEEECCChHHHHHHhC
Confidence 3445668999999999999987 5789999874 454 4667 88999999876665444
No 96
>PRK06185 hypothetical protein; Provisional
Probab=75.18 E-value=8.7 Score=42.40 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=43.5
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIG 180 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIG 180 (749)
.+.+|++++.++.|..+..+ ++++++|.+...+|+ .+++| +.||.|.|+- |. +-...|+.
T Consensus 119 ~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~-~~i~a-~~vI~AdG~~-S~-vr~~~gi~ 178 (407)
T PRK06185 119 SAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGP-GEIRA-DLVVGADGRH-SR-VRALAGLE 178 (407)
T ss_pred hhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCc-EEEEe-CEEEECCCCc-hH-HHHHcCCC
Confidence 34578999999999999887 567888888653443 56888 8899999865 32 33334543
No 97
>PRK07208 hypothetical protein; Provisional
Probab=74.10 E-value=5.9 Score=44.93 Aligned_cols=56 Identities=16% Similarity=0.014 Sum_probs=39.9
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
+..+.+|++++.|++|..++++.+++|.+.+.+|+...+.| +.||+++..-.+.++
T Consensus 229 ~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~a-d~VI~a~p~~~l~~~ 284 (479)
T PRK07208 229 EALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTA-DQVISSMPLRELVAA 284 (479)
T ss_pred HHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEc-CEEEECCCHHHHHHh
Confidence 34568999999999999985555666766544576667888 888887665434433
No 98
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=74.09 E-value=12 Score=42.46 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCccccccccccCCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEE
Q psy3407 67 KIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYI 146 (749)
Q Consensus 67 ~~f~~A~~eLG~~~~~D~N~g~~~G~~~c~~~c~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~ 146 (749)
+.+.+-++++|++...+.+ |.-++. . .+.++-..-|...+++.|++|++++.|+.| + +++ .+|...
T Consensus 57 ~d~~~fF~~~Gi~~~~e~~-----grvfP~----S-~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~-~~~-~~v~~~ 122 (376)
T TIGR03862 57 VALQDWARGLGIETFVGSS-----GRVFPV----E-MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q-GGT-LRFETP 122 (376)
T ss_pred HHHHHHHHHCCCceEECCC-----CEECCC----C-CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e-CCc-EEEEEC
Confidence 3456667788886553222 222211 1 233333334444566889999999999999 3 222 445442
Q ss_pred ecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 147 NSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 147 d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
.+. ..++| +.||||+|..-.|++
T Consensus 123 --~~~-~~~~a-~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 123 --DGQ-STIEA-DAVVLALGGASWSQL 145 (376)
T ss_pred --CCc-eEEec-CEEEEcCCCcccccc
Confidence 222 24788 999999999887765
No 99
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=74.07 E-value=14 Score=33.84 Aligned_cols=73 Identities=25% Similarity=0.528 Sum_probs=44.8
Q ss_pred CCCCCCcceeeec-cceEE-eecCCCCC-------CceeeEEeccchhhhcCCCceeEEEec---c-cceEEEEecCChh
Q psy3407 561 DKSAWTPGFVNLQ-NGILT-VKEAPNSP-------KNISVIQCHSFSQVYDKSRPYTFKVNF---N-PYSFVLFAAPDES 627 (749)
Q Consensus 561 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~ 627 (749)
--..|.+=++-|+ +|.|. -|+-|... .+++|-.|.-.. .++.+++.|++.+ + +.. -.|.|+.|.
T Consensus 13 ~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~--~~~~~~~~F~i~~~~~~~~~~-r~f~a~s~e 89 (102)
T cd01241 13 YIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMK--TERPRPNTFIIRCLQWTTVIE-RTFHVESPE 89 (102)
T ss_pred CCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeee--ccCCCcceEEEEeccCCcccC-EEEEeCCHH
Confidence 3456777777777 66543 55544322 244444443321 2678899999984 2 221 245678999
Q ss_pred hhhHHHHhe
Q psy3407 628 QLFDWLQDI 636 (749)
Q Consensus 628 ~~~~~~~~~ 636 (749)
+.-+|+..|
T Consensus 90 e~~eWi~ai 98 (102)
T cd01241 90 EREEWIHAI 98 (102)
T ss_pred HHHHHHHHH
Confidence 999998866
No 100
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=72.66 E-value=5.5 Score=42.16 Aligned_cols=46 Identities=30% Similarity=0.325 Sum_probs=35.9
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
+...|++++.++.|+.|..+ ++++++|... +| .++| +.||+|+|+-
T Consensus 147 ~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~--~g---~~~a-~~vV~a~G~~ 192 (337)
T TIGR02352 147 LEKLGVEIIEHTEVQHIEIR-GEKVTAIVTP--SG---DVQA-DQVVLAAGAW 192 (337)
T ss_pred HHHcCCEEEccceEEEEEee-CCEEEEEEcC--CC---EEEC-CEEEEcCChh
Confidence 44568999999999999876 5678888642 34 5778 8999999963
No 101
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=72.66 E-value=8.4 Score=42.64 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=40.8
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSG 178 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SG 178 (749)
.+.+.|.+++.++.|+.|..++++++++|+.. +| .++| +.||+|||+- ++.++...|
T Consensus 192 ~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~--~g---~i~a-~~vVvaagg~-~~~l~~~~g 248 (407)
T TIGR01373 192 GADRRGVDIIQNCEVTGFIRRDGGRVIGVETT--RG---FIGA-KKVGVAVAGH-SSVVAAMAG 248 (407)
T ss_pred HHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeC--Cc---eEEC-CEEEECCChh-hHHHHHHcC
Confidence 34566899999999999976535677777653 45 4778 8899999985 455555444
No 102
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=72.06 E-value=13 Score=42.57 Aligned_cols=90 Identities=19% Similarity=0.143 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCccccccccccCCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEE
Q psy3407 67 KIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYI 146 (749)
Q Consensus 67 ~~f~~A~~eLG~~~~~D~N~g~~~G~~~c~~~c~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~ 146 (749)
+-|++-++.+|++.... ..|.-+ |....-++-.+++|.. .++.|++|++++.|..|..++ .+-.+.
T Consensus 82 ~d~i~~~e~~Gi~~~e~-----~~Gr~F----p~sdkA~~Iv~~ll~~-~~~~gV~i~~~~~v~~v~~~~----~~f~l~ 147 (408)
T COG2081 82 EDFIDWVEGLGIALKEE-----DLGRMF----PDSDKASPIVDALLKE-LEALGVTIRTRSRVSSVEKDD----SGFRLD 147 (408)
T ss_pred HHHHHHHHhcCCeeEEc-----cCceec----CCccchHHHHHHHHHH-HHHcCcEEEecceEEeEEecC----ceEEEE
Confidence 45666777888876532 223333 3322223344445543 567899999999999998873 333444
Q ss_pred ecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 147 NSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 147 d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
.++|. ++++ +.+|||.|..--|++
T Consensus 148 t~~g~--~i~~-d~lilAtGG~S~P~l 171 (408)
T COG2081 148 TSSGE--TVKC-DSLILATGGKSWPKL 171 (408)
T ss_pred cCCCC--EEEc-cEEEEecCCcCCCCC
Confidence 44665 6788 889999998877753
No 103
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.06 E-value=19 Score=32.43 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=22.6
Q ss_pred ceeEEEecccceEEEEecCChhhhhHHHHhe
Q psy3407 606 PYTFKVNFNPYSFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (749)
|+.|.|.- |-....|.|++|.+.-+|++.|
T Consensus 61 ~~~F~i~t-~~r~y~l~A~s~~e~~~Wi~al 90 (95)
T cd01265 61 KGRFEIHS-NNEVIALKASSDKQMNYWLQAL 90 (95)
T ss_pred CCEEEEEc-CCcEEEEECCCHHHHHHHHHHH
Confidence 66777754 3445578899999999998765
No 104
>PRK08401 L-aspartate oxidase; Provisional
Probab=71.04 E-value=26 Score=40.22 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=37.9
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT 170 (749)
|....++.|++++.+ .|++|+.+ +++++||.. +|. .++| +.||||+|+...
T Consensus 126 L~~~~~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~---~g~--~i~a-~~VVLATGG~~~ 176 (466)
T PRK08401 126 LYKHARELGVNFIRG-FAEELAIK-NGKAYGVFL---DGE--LLKF-DATVIATGGFSG 176 (466)
T ss_pred HHHHHHhcCCEEEEe-EeEEEEee-CCEEEEEEE---CCE--EEEe-CeEEECCCcCcC
Confidence 333345678999876 78888776 578999876 343 5777 889999998865
No 105
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=69.47 E-value=4.8 Score=46.04 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=42.2
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHh
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL 175 (749)
.++.+.+|++++.|++|..+ ++++++|+.. +|+ .+.| +.||+|++...+-..|+
T Consensus 229 ~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~--~g~--~~~a-d~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 229 AEDLGGELRLNAEVIRIETE-GGRATAVHLA--DGE--RLDA-DAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHCCCEEEECCeEEEEEee-CCEEEEEEEC--CCC--EEEC-CEEEECCcHHHHHHHhc
Confidence 34567999999999999987 5788898774 454 4567 88999998877776665
No 106
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=68.48 E-value=7.9 Score=44.13 Aligned_cols=91 Identities=23% Similarity=0.158 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCccccccccccCCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEE
Q psy3407 67 KIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYI 146 (749)
Q Consensus 67 ~~f~~A~~eLG~~~~~D~N~g~~~G~~~c~~~c~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~ 146 (749)
+.+.+-++++|++.....+ |.-++. .. +..+-...|....++.+++|++++.|..|..+ ++.+.+|+.
T Consensus 80 ~d~~~ff~~~Gv~~~~~~~-----gr~fP~----s~-~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~- 147 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEED-----GRVFPK----SD-KASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKT- 147 (409)
T ss_dssp HHHHHHHHHTT--EEE-ST-----TEEEET----T---HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEE-
T ss_pred HHHHHHHHhcCCeEEEcCC-----CEECCC----CC-cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeec-
Confidence 4566777889987653222 222211 11 22222233334455778999999999999987 456777877
Q ss_pred ecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 147 NSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 147 d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
+ ++ ..+.| +.||||+|..--|++
T Consensus 148 ~-~~--~~~~a-~~vILAtGG~S~p~~ 170 (409)
T PF03486_consen 148 K-NG--GEYEA-DAVILATGGKSYPKT 170 (409)
T ss_dssp T-TT--EEEEE-SEEEE----SSSGGG
T ss_pred c-Cc--ccccC-CEEEEecCCCCcccc
Confidence 2 33 35777 889999999888873
No 107
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=68.20 E-value=13 Score=41.19 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=38.2
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHh
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL 175 (749)
..++.+.+|++++.|++|..+ ++++++|+.. +| +++| +.||+|+|+- +..|+.
T Consensus 210 ~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~--~~---~~~a-~~VV~a~G~~-~~~l~~ 262 (416)
T PRK00711 210 MAEQLGVKFRFNTPVDGLLVE-GGRITGVQTG--GG---VITA-DAYVVALGSY-STALLK 262 (416)
T ss_pred HHHHCCCEEEcCCEEEEEEec-CCEEEEEEeC--Cc---EEeC-CEEEECCCcc-hHHHHH
Confidence 345668999999999999876 4566666542 33 4778 8999999974 455543
No 108
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=68.06 E-value=13 Score=43.34 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=42.4
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHh
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLM 175 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL 175 (749)
+.+.+++++.++.|+.|..+ ++ ..+|++.+. +|+...++| +.||+|+|+- +.+++-
T Consensus 165 A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~ 221 (508)
T PRK12266 165 AAERGAEILTRTRVVSARRE-NG-LWHVTLEDTATGKRYTVRA-RALVNAAGPW-VKQFLD 221 (508)
T ss_pred HHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEcCCCCEEEEEc-CEEEECCCcc-HHHHHh
Confidence 34568999999999999876 33 457777653 576778999 9999999975 556654
No 109
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=67.76 E-value=13 Score=42.94 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=43.0
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHh
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL 175 (749)
+.+.+.+++.++.|+.+..+ + ...+|...+..|++.+++| +.||.|+|+- +.+|+-
T Consensus 165 a~~~Ga~i~~~~~V~~i~~~-~-~~~~v~~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~ 220 (502)
T PRK13369 165 AAERGATILTRTRCVSARRE-G-GLWRVETRDADGETRTVRA-RALVNAAGPW-VTDVIH 220 (502)
T ss_pred HHHCCCEEecCcEEEEEEEc-C-CEEEEEEEeCCCCEEEEEe-cEEEECCCcc-HHHHHh
Confidence 34568999999999999876 3 3467777664477788999 9999999965 556654
No 110
>PLN02985 squalene monooxygenase
Probab=66.24 E-value=17 Score=42.51 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=39.6
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIe 169 (749)
+.+.+|+++..+ .|..++.+ +++++||++.+.+|++.+++| +-||.|.|.--
T Consensus 157 a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~~dG~~~~~~A-dLVVgADG~~S 208 (514)
T PLN02985 157 ASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYKNSAGEETTALA-PLTVVCDGCYS 208 (514)
T ss_pred HHhCCCeEEEee-eEEEEEEc-CCEEEEEEEEcCCCCEEEEEC-CEEEECCCCch
Confidence 445679999855 57777666 467899999766787777888 89999998643
No 111
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=65.02 E-value=13 Score=34.43 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=39.5
Q ss_pred ceeeEEeccchhhhcCCCceeEEEecccceEEEEecCChhhhhHHHHhee
Q psy3407 588 NISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
-|.+=.|++..+..|+.+.|.|.+-. |-.-..|+|++|.+.-+|++.|.
T Consensus 51 vI~L~~c~~v~~~~d~k~~~~f~i~t-~dr~f~l~aese~E~~~Wi~~i~ 99 (101)
T cd01257 51 VIPLESCFNINKRADAKHRHLIALYT-RDEYFAVAAENEAEQDSWYQALL 99 (101)
T ss_pred EEEccceEEEeeccccccCeEEEEEe-CCceEEEEeCCHHHHHHHHHHHh
Confidence 35555688888888888889999966 66677789999999999998763
No 112
>KOG4254|consensus
Probab=62.02 E-value=6.3 Score=45.72 Aligned_cols=65 Identities=26% Similarity=0.228 Sum_probs=48.4
Q ss_pred CCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCCh
Q psy3407 100 RYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSP 171 (749)
Q Consensus 100 ~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTP 171 (749)
+.|-...-+. .+.+.+++.+.+|.|++.|..|+.| +++|+||... +|+ ++++ |.||--|+-..|=
T Consensus 259 p~GG~Gavs~-aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~--dG~--ev~s-k~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 259 PRGGMGAVSF-AIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLA--DGT--EVRS-KIVVSNATPWDTF 323 (561)
T ss_pred CCCChhHHHH-HHHHHHHhccceeeehhhhhheecc-CCeEEEEEec--CCc--EEEe-eeeecCCchHHHH
Confidence 4454444444 3446678899999999999999999 4999999997 475 4566 7777777766665
No 113
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=61.98 E-value=19 Score=40.83 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=43.1
Q ss_pred hhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 108 SKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 108 a~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
...+|...+++.+++|++++.|++|+.+ ++++++|.. +|. +++| +.||+|.|+ + ..|....|+
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~---~g~--~i~A-~~VI~A~G~-~-s~l~~~lgl 172 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEA---DGD--VIEA-KTVILADGV-N-SILAEKLGM 172 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEc---CCc--EEEC-CEEEEEeCC-C-HHHHHHcCC
Confidence 3445655556678999999999999877 456666642 443 4778 899999997 3 344433343
No 114
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=61.94 E-value=26 Score=38.87 Aligned_cols=56 Identities=23% Similarity=0.169 Sum_probs=40.2
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIG 180 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIG 180 (749)
.++.|.+++.++.|.++..++ +.+ .|+. .+| +++| +.||+|+|+ .++.++...|+.
T Consensus 159 ~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~--~~g---~i~a-d~vV~A~G~-~s~~l~~~~g~~ 214 (393)
T PRK11728 159 IQARGGEIRLGAEVTALDEHA-NGV-VVRT--TQG---EYEA-RTLINCAGL-MSDRLAKMAGLE 214 (393)
T ss_pred HHhCCCEEEcCCEEEEEEecC-CeE-EEEE--CCC---EEEe-CEEEECCCc-chHHHHHHhCCC
Confidence 345689999999999998763 332 3433 244 4778 899999997 578888777653
No 115
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=61.70 E-value=12 Score=43.10 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=41.3
Q ss_pred ccCCCeEEEcccEEEEEEeCC--CC--cEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 116 KFRENLIILKNTEVIKILIDS--KL--KAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~--gg--rAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
.++.+.+|++++.|++|+.++ ++ +++||++.+.++ ...+.| +.||+|..+-.+.+||
T Consensus 229 L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~-~~~~~a-D~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 229 IEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEG-KKVIKA-DAYVAACDVPGIKRLL 289 (474)
T ss_pred HHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCc-ceEEEC-CEEEECCChHHHHhhC
Confidence 345678999999999999863 22 488988853222 134677 8899999887777766
No 116
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.40 E-value=10 Score=43.86 Aligned_cols=56 Identities=23% Similarity=0.198 Sum_probs=39.4
Q ss_pred hhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhh
Q psy3407 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLML 176 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~ 176 (749)
..+++.+.+|.+++.|++|+.+ +++ |+.+...+| ..+.| +.||..+.. ..+..|..
T Consensus 232 ~~~~~~Gg~I~~~~~V~~I~v~-~g~--g~~~~~~~g--~~~~a-d~vv~~~~~-~~~~~l~~ 287 (487)
T COG1233 232 ELAREHGGEIRTGAEVSQILVE-GGK--GVGVRTSDG--ENIEA-DAVVSNADP-ALLARLLG 287 (487)
T ss_pred HHHHHcCCEEECCCceEEEEEe-CCc--ceEEecccc--ceecc-ceeEecCch-hhhhhhhh
Confidence 4456778999999999999998 456 555554355 56677 778877776 44444443
No 117
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=61.03 E-value=22 Score=33.11 Aligned_cols=73 Identities=25% Similarity=0.428 Sum_probs=46.8
Q ss_pred CCcceeeeccceEEeecCC-C-C-C-CceeeEEeccchhhhcC----CCceeEEEecccceEEEEecCChhhhhHHHHhe
Q psy3407 565 WTPGFVNLQNGILTVKEAP-N-S-P-KNISVIQCHSFSQVYDK----SRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~-~-~-~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (749)
|--=+.-|+++.|.-.... . + + .-|.+=.|++--.+.++ ++|+.|.+ +.|---.+|.|.+|.+--+|+|-|
T Consensus 19 WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei-~tp~rt~~l~A~se~e~e~WI~~i 97 (101)
T cd01264 19 WKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEI-FTADKTYILKAKDEKNAEEWLQCL 97 (101)
T ss_pred ceeEEEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEE-EcCCceEEEEeCCHHHHHHHHHHH
Confidence 4444445556655443322 1 1 2 35566667766655543 45999999 556666677899999999999976
Q ss_pred ee
Q psy3407 637 MI 638 (749)
Q Consensus 637 ~~ 638 (749)
-+
T Consensus 98 ~~ 99 (101)
T cd01264 98 NI 99 (101)
T ss_pred Hh
Confidence 43
No 118
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=60.05 E-value=42 Score=31.52 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=12.4
Q ss_pred CCCCcceeeeccceEEeecCCCC
Q psy3407 563 SAWTPGFVNLQNGILTVKEAPNS 585 (749)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~ 585 (749)
..|..=|+-|.++.|..-..+..
T Consensus 14 ~~WkkRwfvL~~~~L~yyk~~~~ 36 (125)
T cd01252 14 KTWKRRWFILTDNCLYYFEYTTD 36 (125)
T ss_pred CCeEeEEEEEECCEEEEEcCCCC
Confidence 34555555566666655554443
No 119
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=59.34 E-value=13 Score=41.18 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=38.3
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCC--cEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKL--KAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~gg--rAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
.|+.-++++=...+.-++.|++|..++++ ...-|+..+.+|....+.| |.|||+.| .+|.+
T Consensus 99 dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~a-r~vVla~G--~~P~i 161 (341)
T PF13434_consen 99 DYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRA-RNVVLATG--GQPRI 161 (341)
T ss_dssp HHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEE-SEEEE------EE--
T ss_pred HHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEe-CeEEECcC--CCCCC
Confidence 36655555544447789999999987322 4556666666788889999 89999999 56654
No 120
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=59.09 E-value=15 Score=34.59 Aligned_cols=56 Identities=30% Similarity=0.532 Sum_probs=44.1
Q ss_pred cCCCCCCceeeEEeccchhhhcC------CCceeEEEecccceEEEEecCChhhhhHHHHhe
Q psy3407 581 EAPNSPKNISVIQCHSFSQVYDK------SRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (749)
..|.|+|--+-|.|-+...|-.- .+-+||.+.-..-.=.+|-|-|+.|+-.||.+|
T Consensus 43 ~pPKssrpk~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~I 104 (107)
T cd01231 43 LPPKSSKPKLQVACSSISEVRECTRLEMPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAEL 104 (107)
T ss_pred CCCCCCCCccccchhhhhhhhhcccccccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHH
Confidence 35788888889999999888542 256788777655566778899999999999987
No 121
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=59.08 E-value=24 Score=32.38 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=23.5
Q ss_pred CceeEEEecccceEEEEecCChhhhhHHHHhe
Q psy3407 605 RPYTFKVNFNPYSFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (749)
..|.|.+.- |--..+|+|++|.++-+|++.|
T Consensus 74 ~~~~f~i~t-~~r~y~l~A~s~ee~~~Wi~~I 104 (108)
T cd01266 74 FGYGFDIET-IVRDLYLVAKNEEEMTLWVNCI 104 (108)
T ss_pred cceEEEEEe-CCccEEEEECCHHHHHHHHHHH
Confidence 356788874 4445567889999999999876
No 122
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=57.60 E-value=41 Score=40.62 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=41.0
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHh
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL 175 (749)
.+.+|++++.+ .|..++.++++++.||... +|. .+.| +.||+|+|++...++..
T Consensus 107 e~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~--~G~--~I~A-d~VILATGtfL~g~ihi 160 (617)
T TIGR00136 107 ENQPNLSLFQG-EVEDLILEDNDEIKGVVTQ--DGL--KFRA-KAVIITTGTFLRGKIHI 160 (617)
T ss_pred HcCCCcEEEEe-EEEEEEEecCCcEEEEEEC--CCC--EEEC-CEEEEccCcccCCCEEe
Confidence 45679999855 6777776645789999885 454 5788 89999999997666655
No 123
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=57.42 E-value=45 Score=34.54 Aligned_cols=58 Identities=26% Similarity=0.246 Sum_probs=44.3
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhc
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLS 177 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~S 177 (749)
++.|+++++++.|.++.-+ +++.+|++.+. +|+..++.+ +.||+|.|....+.+|..+
T Consensus 188 ~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~-D~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 188 KNPNIEFLWNSTVKEIVGD--NKVEGVKIKNTVTGEEEELKV-DGVFIAIGHEPNTELLKGL 246 (300)
T ss_pred hCCCeEEEeccEEEEEEcc--CcEEEEEEEecCCCceEEEEc-cEEEEeeCCCCChHHHHHh
Confidence 3459999999999999754 37888887653 466678888 8999999976666666554
No 124
>PRK06126 hypothetical protein; Provisional
Probab=55.42 E-value=36 Score=39.53 Aligned_cols=50 Identities=8% Similarity=0.047 Sum_probs=38.0
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAI 168 (749)
.+.+|++|+.++.|+++..++ +.++ |.+.+ .+|+..+++| +.||.|.|+-
T Consensus 137 ~~~~~v~i~~~~~v~~i~~~~-~~v~-v~~~~~~~g~~~~i~a-d~vVgADG~~ 187 (545)
T PRK06126 137 AAQPGVTLRYGHRLTDFEQDA-DGVT-ATVEDLDGGESLTIRA-DYLVGCDGAR 187 (545)
T ss_pred HhCCCceEEeccEEEEEEECC-CeEE-EEEEECCCCcEEEEEE-EEEEecCCcc
Confidence 345789999999999998873 4454 55555 3577778999 8899998863
No 125
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=55.21 E-value=48 Score=38.57 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=47.7
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhc
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLS 177 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~S 177 (749)
+..|+++++++.|.++.-+ ++++++|++.+. +|+..++.+ ..|+++.|..-.+.+|..+
T Consensus 398 ~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~~~g~~~~i~~-D~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGD-GDKVTGLTYKDRTTGEEHHLEL-EGVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred cCCCcEEEECcEEEEEEcC-CCcEEEEEEEECCCCcEEEEEc-CEEEEeECCccCchHHhhh
Confidence 3479999999999999765 578999999764 566678888 8999999998777776544
No 126
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=54.04 E-value=25 Score=37.40 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=43.7
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCC-cEEEEEEEec----CC---eEEEEEeccEEEEccCC-CCChHHHhh
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKL-KAYGVEYINS----QG---KICHVNSTREVILSAGA-VGSPQLLML 176 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~gg-rAtGV~y~d~----~G---~~~~V~ArKeVILAAGA-IeTPrLLL~ 176 (749)
+|.....+.+.+++.++.|+.|+.++++ +++||..... .| ....++| |.||.|+|. =.-.+.|..
T Consensus 105 ~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~A-k~VVdATG~~a~v~~~l~~ 178 (254)
T TIGR00292 105 TLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRS-RVVVDATGHDAEIVAVCAK 178 (254)
T ss_pred HHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEc-CEEEEeecCCchHHHHHHH
Confidence 3433334457999999999999987443 8999987421 12 2467889 999999993 233344443
No 127
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=53.72 E-value=25 Score=40.56 Aligned_cols=69 Identities=22% Similarity=0.208 Sum_probs=47.1
Q ss_pred hhhhhhhhccCCCeE--EEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 108 SKAFLEPAKFRENLI--ILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 108 a~ayL~pa~~r~NLt--IlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
...||...+++-++. |+.++.|++|..++ ++ .-|+..+.++......+ +.||||.|....|++.-.-|+
T Consensus 113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~-w~V~~~~~~~~~~~~~~-d~VIvAtG~~~~P~~P~ipG~ 183 (461)
T PLN02172 113 VLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GK-WRVQSKNSGGFSKDEIF-DAVVVCNGHYTEPNVAHIPGI 183 (461)
T ss_pred HHHHHHHHHHHcCCcceEEecCEEEEEeecC-Ce-EEEEEEcCCCceEEEEc-CEEEEeccCCCCCcCCCCCCc
Confidence 345777666666776 89999999998762 32 33444432233334556 889999999999998877664
No 128
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=52.17 E-value=87 Score=28.18 Aligned_cols=81 Identities=15% Similarity=0.245 Sum_probs=47.3
Q ss_pred CceeEEecCCCCCCcceeeeccceEEeecCCC----CCC-ceeeEEeccchhhhcCCCceeEEEecccceEEEEecCChh
Q psy3407 553 GNLMYKINDKSAWTPGFVNLQNGILTVKEAPN----SPK-NISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDES 627 (749)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (749)
|-|.=.-|--..|.+=|.-|++|.|.-=..+. .|+ .|.+-.|+.-. +..++.+|.+.-++-.-..+.|.++.
T Consensus 3 G~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~---~~~~~~~F~i~~~~~r~~~L~A~s~~ 79 (91)
T cd01247 3 GVLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAA---HEFDENRFDISVNENVVWYLRAENSQ 79 (91)
T ss_pred eEEEEeccccCCCceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEc---CCCCCCEEEEEeCCCeEEEEEeCCHH
Confidence 33333344455777777777788775432221 122 23333343222 23457889998887444556678888
Q ss_pred hhhHHHHhe
Q psy3407 628 QLFDWLQDI 636 (749)
Q Consensus 628 ~~~~~~~~~ 636 (749)
+.-.|++.|
T Consensus 80 e~~~Wi~al 88 (91)
T cd01247 80 SRLLWMDSV 88 (91)
T ss_pred HHHHHHHHH
Confidence 888998765
No 129
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=51.86 E-value=24 Score=39.39 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=39.1
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCC
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGA 167 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGA 167 (749)
.||...++..+++++++++|+.+..++++.++++..- + ..++| |.||.|-|+
T Consensus 99 ~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~---~--~e~~a-~~vI~AdG~ 150 (396)
T COG0644 99 KWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAG---D--DEVRA-KVVIDADGV 150 (396)
T ss_pred HHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcC---C--EEEEc-CEEEECCCc
Confidence 3676666778999999999999999855555544432 2 67888 888888874
No 130
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=51.65 E-value=25 Score=42.36 Aligned_cols=46 Identities=22% Similarity=0.407 Sum_probs=36.6
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
.+.+|++++ ++.|..|..+ +++++||... +|. .+.| +.||+|+|+.
T Consensus 111 ~~~~nV~I~-q~~V~~Li~e-~grV~GV~t~--dG~--~I~A-k~VIlATGTF 156 (618)
T PRK05192 111 ENQPNLDLF-QGEVEDLIVE-NGRVVGVVTQ--DGL--EFRA-KAVVLTTGTF 156 (618)
T ss_pred HcCCCcEEE-EeEEEEEEec-CCEEEEEEEC--CCC--EEEC-CEEEEeeCcc
Confidence 356799986 6779999887 5789999875 453 5788 8999999985
No 131
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.09 E-value=42 Score=38.20 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=46.7
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhc
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLS 177 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~S 177 (749)
+.-+|++|++++.-+.|.-| +.+++|.+|.|. +|..+.+.- .-|.+--|-+-...+|.-+
T Consensus 400 ~sl~Nv~ii~na~Ttei~Gd-g~kV~Gl~Y~dr~sge~~~l~L-eGvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 400 RSLPNVTIITNAQTTEVKGD-GDKVTGLEYRDRVSGEEHHLEL-EGVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred hcCCCcEEEecceeeEEecC-CceecceEEEeccCCceeEEEe-eeeEEEEecccChhHhhch
Confidence 35689999999999998776 689999999986 677777765 5566767766666666544
No 132
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=50.88 E-value=32 Score=38.12 Aligned_cols=59 Identities=20% Similarity=0.074 Sum_probs=38.3
Q ss_pred hhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCC-eEEEEEeccEEEEccCCCCChHHHhh
Q psy3407 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQG-KICHVNSTREVILSAGAVGSPQLLML 176 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G-~~~~V~ArKeVILAAGAIeTPrLLL~ 176 (749)
..+.+.+++|+.++.|++|..+ ++.+ .|...+.++ ...+++| +.||+|+|+- ++.|+..
T Consensus 205 ~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a-~~vV~a~G~~-s~~l~~~ 264 (410)
T PRK12409 205 AACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEF-DGVVVCAGVG-SRALAAM 264 (410)
T ss_pred HHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEec-CEEEECCCcC-hHHHHHH
Confidence 3345668999999999999876 3443 344433111 1235788 9999999964 5555543
No 133
>PRK10015 oxidoreductase; Provisional
Probab=50.88 E-value=28 Score=39.58 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=38.6
Q ss_pred hhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCC
Q psy3407 109 KAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGA 167 (749)
Q Consensus 109 ~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGA 167 (749)
..+|...++..+++++.++.|+.|..+ ++++++|.. ++ ..++| +.||+|.|+
T Consensus 111 d~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~---~~--~~i~A-~~VI~AdG~ 162 (429)
T PRK10015 111 DPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA---GD--DILEA-NVVILADGV 162 (429)
T ss_pred HHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe---CC--eEEEC-CEEEEccCc
Confidence 345655445678999999999999876 467777753 23 35888 999999996
No 134
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=50.65 E-value=27 Score=32.06 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=21.6
Q ss_pred ceeEEEecccceEEEEecCChhhhhHHHHhee
Q psy3407 606 PYTFKVNFNPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
+|.|.|.- |---.+|+|++|.+.-+|++.|-
T Consensus 67 ~~~F~i~t-~~Rty~l~a~s~~e~~~Wi~ai~ 97 (103)
T cd01251 67 WYGVTLVT-PERKFLFACETEQDRREWIAAFQ 97 (103)
T ss_pred cceEEEEe-CCeEEEEECCCHHHHHHHHHHHH
Confidence 44555543 34445678999999999988663
No 135
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=49.34 E-value=42 Score=36.44 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=36.9
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSG 178 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SG 178 (749)
++++.+.+++.++.|++|..+ ++++ .|+. .+| +++| +.||+|+|+- +++|+..-|
T Consensus 154 ~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~--~~~---~i~a-~~vV~aaG~~-~~~l~~~~g 208 (380)
T TIGR01377 154 LAEAHGATVRDGTKVVEIEPT-ELLV-TVKT--TKG---SYQA-NKLVVTAGAW-TSKLLSPLG 208 (380)
T ss_pred HHHHcCCEEECCCeEEEEEec-CCeE-EEEe--CCC---EEEe-CEEEEecCcc-hHHHhhhcc
Confidence 344568999999999999876 3433 3443 234 4777 8899999985 445554434
No 136
>KOG2852|consensus
Probab=48.42 E-value=30 Score=38.43 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=46.1
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
|..++++.|++++.+. |..|. |+..|+++|.+....+..+...+ ..+|||||.- |++||..-+|
T Consensus 154 ~sea~k~~~V~lv~Gk-v~ev~-dEk~r~n~v~~ae~~~ti~~~d~-~~ivvsaGPW-Tskllp~~rI 217 (380)
T KOG2852|consen 154 LSEAEKRGGVKLVFGK-VKEVS-DEKHRINSVPKAEAEDTIIKADV-HKIVVSAGPW-TSKLLPFTRI 217 (380)
T ss_pred HHHHHhhcCeEEEEee-eEEee-cccccccccchhhhcCceEEeee-eEEEEecCCC-chhhcccccc
Confidence 4456789999999886 44454 44678888888643344455556 7899999974 8999998766
No 137
>PLN02487 zeta-carotene desaturase
Probab=48.29 E-value=22 Score=42.36 Aligned_cols=56 Identities=14% Similarity=0.045 Sum_probs=40.5
Q ss_pred cCCCeEEEcccEEEEEEeCC--CC--cEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 117 FRENLIILKNTEVIKILIDS--KL--KAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~--gg--rAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
++.|.+|++++.|.+|+.+. ++ +++||++.+ ++....+.| +.||++++.-...+||
T Consensus 306 ~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~~a-D~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 306 TDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIVKA-DAYVAACDVPGIKRLL 365 (569)
T ss_pred HHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEEEC-CEEEECCCHHHHHHhC
Confidence 46678999999999999972 22 589999853 333345677 8899988866554444
No 138
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=48.15 E-value=43 Score=36.90 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=32.6
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
+..+ +++++.++.|+.|..+ +++ .+|+ ..+|. .++| +.||+|+|+-
T Consensus 144 ~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~--t~~g~--~~~a-~~vV~a~G~~ 189 (381)
T TIGR03197 144 HAGI-RLTLHFNTEITSLERD-GEG-WQLL--DANGE--VIAA-SVVVLANGAQ 189 (381)
T ss_pred ccCC-CcEEEeCCEEEEEEEc-CCe-EEEE--eCCCC--EEEc-CEEEEcCCcc
Confidence 3445 8999999999999876 333 3343 33454 3677 8999999964
No 139
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=47.69 E-value=46 Score=36.74 Aligned_cols=50 Identities=22% Similarity=0.172 Sum_probs=36.0
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
+.+.+|++++.++.|++|..++ +. +.|++.+ ++...+++| +.||.|-|+-
T Consensus 131 ~~~~~~v~i~~~~~v~~v~~~~-~~-~~v~~~~-~~~~~~i~a-dlvIgADG~~ 180 (415)
T PRK07364 131 LQSCPNITWLCPAEVVSVEYQQ-DA-ATVTLEI-EGKQQTLQS-KLVVAADGAR 180 (415)
T ss_pred HhcCCCcEEEcCCeeEEEEecC-Ce-eEEEEcc-CCcceEEee-eEEEEeCCCC
Confidence 3345789999999999998763 33 3366654 444567889 9999999963
No 140
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=47.55 E-value=25 Score=40.23 Aligned_cols=83 Identities=20% Similarity=0.396 Sum_probs=57.4
Q ss_pred EEecCCCCCCcceeeeccceEEee--cCC----CCC---CceeeEEeccchhhhcCCCceeEEEecccceEEEEecCChh
Q psy3407 557 YKINDKSAWTPGFVNLQNGILTVK--EAP----NSP---KNISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDES 627 (749)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (749)
+|....-.|-..|.-+.+|-+++. +-| .+| .+..|-+|.---..+.+.+|++|.+.+..-.=.+|.+.++.
T Consensus 384 ~k~~~~~~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 463 (478)
T PTZ00267 384 YKYSSDMRWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEVYSQKHPNQLVLWFNNGQKIIAYAKTAE 463 (478)
T ss_pred eccCCCcchhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHHhcCCCCceEEEEecCCcEEEEecCChH
Confidence 344444469888888887776663 111 222 33345555444466889999999998877767778889999
Q ss_pred hhhHHHHheeeE
Q psy3407 628 QLFDWLQDIMIS 639 (749)
Q Consensus 628 ~~~~~~~~~~~~ 639 (749)
..-.|++.|+-.
T Consensus 464 ~~~~W~~~~~~~ 475 (478)
T PTZ00267 464 DRDQWISKFQRA 475 (478)
T ss_pred HHHHHHHHHHHH
Confidence 999999988643
No 141
>PRK07233 hypothetical protein; Provisional
Probab=46.01 E-value=24 Score=38.82 Aligned_cols=51 Identities=25% Similarity=0.167 Sum_probs=36.9
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
+..+.+|++++.|.+|..+ +++++++.. +|+ .++| +.||+|+.+-..++||
T Consensus 209 ~~~g~~v~~~~~V~~i~~~-~~~~~~~~~---~~~--~~~a-d~vI~a~p~~~~~~ll 259 (434)
T PRK07233 209 EARGGEIRLGTPVTSVVID-GGGVTGVEV---DGE--EEDF-DAVISTAPPPILARLV 259 (434)
T ss_pred HhcCceEEeCCCeeEEEEc-CCceEEEEe---CCc--eEEC-CEEEECCCHHHHHhhc
Confidence 3456799999999999987 456766652 443 4677 8899999865555544
No 142
>PRK12831 putative oxidoreductase; Provisional
Probab=45.48 E-value=53 Score=37.86 Aligned_cols=57 Identities=25% Similarity=0.273 Sum_probs=42.1
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-------c---------CCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYIN-------S---------QGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-------~---------~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
+..|+++++++.+.+++.+++++++||++.. . +|....+.+ ..||+|.|..-...+|
T Consensus 329 ~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~-D~Vi~AiG~~p~~~~~ 401 (464)
T PRK12831 329 KEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEV-DTVIMSLGTSPNPLIS 401 (464)
T ss_pred HHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEEC-CEEEECCCCCCChhhh
Confidence 3568999999999999876567999998752 1 234457888 8999999965443333
No 143
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=44.90 E-value=85 Score=36.59 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=44.5
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHh
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLM 175 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL 175 (749)
+.|++|++++.|.++.-+ ++++++|++.+. +|+...+.+ ..||+|.|..-...+|-
T Consensus 400 ~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~~~~~i~~-D~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGD-GDKVTGIRYQDRNSGEEKQLDL-DGVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCCEEEECCeeEEEEcC-CCEEEEEEEEECCCCcEEEEEc-CEEEEEeCCcCCchHHh
Confidence 468999999999999755 468889998763 466667888 89999999877666664
No 144
>PLN02612 phytoene desaturase
Probab=43.24 E-value=30 Score=40.95 Aligned_cols=44 Identities=11% Similarity=0.026 Sum_probs=34.5
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccC
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAG 166 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAG 166 (749)
+.+.+|++++.|.+|+.++++++++|+.. +|+ .+.| +.||+|..
T Consensus 320 ~~G~~I~l~~~V~~I~~~~~g~v~~v~~~--~G~--~~~a-d~VI~a~p 363 (567)
T PLN02612 320 SLGGEVRLNSRIKKIELNDDGTVKHFLLT--NGS--VVEG-DVYVSATP 363 (567)
T ss_pred hcCCEEEeCCeeeEEEECCCCcEEEEEEC--CCc--EEEC-CEEEECCC
Confidence 45789999999999999756778888774 564 4667 88999864
No 145
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=42.34 E-value=56 Score=34.31 Aligned_cols=57 Identities=19% Similarity=0.074 Sum_probs=38.1
Q ss_pred hhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCC
Q psy3407 109 KAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGA 167 (749)
Q Consensus 109 ~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGA 167 (749)
...|...+++.+.+|..++.|..+..++ +.++.+.....+|+..+++| +.||-|-|+
T Consensus 114 ~~~L~~~~~~~gv~i~~~~~v~~~~~d~-~~~~~~~~~~~~g~~~~i~a-dlvVgADG~ 170 (356)
T PF01494_consen 114 DRALREEAEERGVDIRFGTRVVSIEQDD-DGVTVVVRDGEDGEEETIEA-DLVVGADGA 170 (356)
T ss_dssp HHHHHHHHHHHTEEEEESEEEEEEEEET-TEEEEEEEETCTCEEEEEEE-SEEEE-SGT
T ss_pred HHhhhhhhhhhhhhheeeeecccccccc-cccccccccccCCceeEEEE-eeeecccCc
Confidence 3344443344459999999999998873 44554443333688889999 877777774
No 146
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=42.02 E-value=54 Score=35.57 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=34.7
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
..+.+++++.++.|++|..++ + ++.+...+| .++| +.||+|+|+. ++.|+
T Consensus 159 ~~~~gv~i~~~~~v~~i~~~~-~---~~~v~~~~g---~~~a-~~vV~A~G~~-~~~l~ 208 (376)
T PRK11259 159 AREAGAELLFNEPVTAIEADG-D---GVTVTTADG---TYEA-KKLVVSAGAW-VKDLL 208 (376)
T ss_pred HHHCCCEEECCCEEEEEEeeC-C---eEEEEeCCC---EEEe-eEEEEecCcc-hhhhc
Confidence 345689999999999998763 3 233333345 4778 8999999975 34443
No 147
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=41.82 E-value=50 Score=37.96 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=44.1
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEec----------CCeEEEEEeccEEEEccCCCC-ChHHHhhcCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINS----------QGKICHVNSTREVILSAGAVG-SPQLLMLSGI 179 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~----------~G~~~~V~ArKeVILAAGAIe-TPrLLL~SGI 179 (749)
...|+++++++.+.+|.-+ ++++++|++... .|...++.+ ..||+|.|..- +..||...|+
T Consensus 340 ~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~-D~VI~A~G~~p~~~~l~~~~gl 411 (471)
T PRK12810 340 HEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVEGSEFVLPA-DLVLLAMGFTGPEAGLLAQFGV 411 (471)
T ss_pred HHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccCCceEEEEC-CEEEECcCcCCCchhhccccCc
Confidence 3568999999999999754 578999987521 255677888 99999999543 3446555453
No 148
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=41.64 E-value=70 Score=36.57 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=39.9
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-------cCC---------eEEEEEeccEEEEccCCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYIN-------SQG---------KICHVNSTREVILSAGAVG 169 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-------~~G---------~~~~V~ArKeVILAAGAIe 169 (749)
++..|+++++++.+.++.-++++++++|++.. .+| ....+.+ ..||+|.|..-
T Consensus 319 l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-D~Vi~AiG~~p 387 (449)
T TIGR01316 319 AEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEA-DAVIVAIGNGS 387 (449)
T ss_pred HHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEEC-CEEEECCCCCC
Confidence 34668999999999999766567899998852 123 3456888 89999999643
No 149
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=41.62 E-value=56 Score=37.09 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=44.3
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEE--ec----CCe--------EEEEEeccEEEEccCCCCChHHHhhc
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYI--NS----QGK--------ICHVNSTREVILSAGAVGSPQLLMLS 177 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~--d~----~G~--------~~~V~ArKeVILAAGAIeTPrLLL~S 177 (749)
+..++.+++....+|.+|... +++++||.-. .+ .|+ .++++| ..||++.|.|+--.=|.+-
T Consensus 162 ~~~~~~v~f~~RHrV~~l~~t-~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A-~aviv~SGGIGGnhelVRr 236 (552)
T COG3573 162 AQRRGRVTFRFRHRVDGLTTT-GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSA-SAVIVASGGIGGNHELVRR 236 (552)
T ss_pred HHhCCceEEEeeeeccceEee-CCeEeeecccccCCCccccCCCccceeecceEEee-eeEEEecCCcCCCHHHHHh
Confidence 345778999999999999988 7899999742 11 121 256778 8899999988765555443
No 150
>KOG1298|consensus
Probab=40.80 E-value=27 Score=40.21 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=41.4
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
+...+|+++..+ .|..|+-+ ++.++||.|.++.|++.+..| .-.|+|-|-+
T Consensus 157 a~slpNV~~eeG-tV~sLlee-~gvvkGV~yk~k~gee~~~~A-pLTvVCDGcf 207 (509)
T KOG1298|consen 157 AASLPNVRLEEG-TVKSLLEE-EGVVKGVTYKNKEGEEVEAFA-PLTVVCDGCF 207 (509)
T ss_pred HhcCCCeEEeee-eHHHHHhc-cCeEEeEEEecCCCceEEEec-ceEEEecchh
Confidence 456789988655 47777666 569999999988888889999 8999999976
No 151
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=40.15 E-value=57 Score=35.44 Aligned_cols=44 Identities=25% Similarity=0.227 Sum_probs=30.5
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
++.+++|++++.|+.|.. + +|+. .+|. ++| +.||+|+|+- ++.|
T Consensus 157 ~~~Gv~i~~~t~V~~i~~---~---~v~t--~~g~---i~a-~~VV~A~G~~-s~~l 200 (365)
T TIGR03364 157 EQHGVEFHWNTAVTSVET---G---TVRT--SRGD---VHA-DQVFVCPGAD-FETL 200 (365)
T ss_pred hcCCCEEEeCCeEEEEec---C---eEEe--CCCc---EEe-CEEEECCCCC-hhhh
Confidence 345899999999999852 2 3433 2453 567 8999999984 4444
No 152
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=39.91 E-value=83 Score=36.68 Aligned_cols=52 Identities=19% Similarity=0.109 Sum_probs=38.7
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCCh
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSP 171 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTP 171 (749)
+.+|++|+.++.|+.|+.++ +.+ .|++.+.+|+..+++| +.||-|-|+--+-
T Consensus 125 ~~~gv~v~~g~~v~~i~~~~-~~v-~v~~~~~~G~~~~i~a-d~vVgADG~~S~v 176 (538)
T PRK06183 125 RFPHVRVRFGHEVTALTQDD-DGV-TVTLTDADGQRETVRA-RYVVGCDGANSFV 176 (538)
T ss_pred hCCCcEEEcCCEEEEEEEcC-CeE-EEEEEcCCCCEEEEEE-EEEEecCCCchhH
Confidence 34689999999999998874 333 4566544677778999 8899988865444
No 153
>PRK10262 thioredoxin reductase; Provisional
Probab=39.53 E-value=1.2e+02 Score=32.55 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=45.0
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec--CCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINS--QGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~--~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
..+..++++++++.|.+|.-+ ++++++|++.+. .+...++.+ ..||++.|..-...|+ .+++
T Consensus 194 ~l~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~-D~vv~a~G~~p~~~l~-~~~l 257 (321)
T PRK10262 194 KVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDV-AGLFVAIGHSPNTAIF-EGQL 257 (321)
T ss_pred hccCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCeEEEEEC-CEEEEEeCCccChhHh-hccc
Confidence 345678999999999999754 356888988753 244567888 9999999976666544 3444
No 154
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=38.65 E-value=70 Score=36.74 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=40.8
Q ss_pred hhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
...++.|++|++++.|.+|.-++ +. ..|++.+.+|....+.+ ..||+|.|..-....|
T Consensus 232 ~~l~~~gi~i~~~~~v~~i~~~~-~~-v~v~~~~~~g~~~~i~~-D~vl~a~G~~p~~~~l 289 (475)
T PRK06327 232 KAFTKQGLDIHLGVKIGEIKTGG-KG-VSVAYTDADGEAQTLEV-DKLIVSIGRVPNTDGL 289 (475)
T ss_pred HHHHHcCcEEEeCcEEEEEEEcC-CE-EEEEEEeCCCceeEEEc-CEEEEccCCccCCCCC
Confidence 33456789999999999997653 33 34555553466567888 8999999976555443
No 155
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=37.48 E-value=63 Score=37.23 Aligned_cols=62 Identities=23% Similarity=0.218 Sum_probs=44.0
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-------cC---------CeEEEEEeccEEEEccCCCCC-hHHHhhcCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYIN-------SQ---------GKICHVNSTREVILSAGAVGS-PQLLMLSGI 179 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-------~~---------G~~~~V~ArKeVILAAGAIeT-PrLLL~SGI 179 (749)
...|+++++++.+.+|..++++++++|++.. .+ |...++.+ ..||+|.|..-. ..+|..+|+
T Consensus 331 ~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~-D~Vi~a~G~~p~~~~~~~~~gl 409 (467)
T TIGR01318 331 REEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPA-DVVIMAFGFQPHAMPWLAGHGI 409 (467)
T ss_pred HhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEEC-CEEEECCcCCCCccccccccCc
Confidence 3568999999999999876567899998742 12 34567888 899999996543 334444443
No 156
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=37.13 E-value=18 Score=43.08 Aligned_cols=52 Identities=19% Similarity=0.392 Sum_probs=38.4
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
...+||+|+-++ |..|+.+++.+++||... +|. .+.| +.|||++|++-.-++
T Consensus 111 e~~~NL~l~q~~-v~dli~e~~~~v~GV~t~--~G~--~~~a-~aVVlTTGTFL~G~I 162 (621)
T COG0445 111 ENQPNLHLLQGE-VEDLIVEEGQRVVGVVTA--DGP--EFHA-KAVVLTTGTFLRGKI 162 (621)
T ss_pred hcCCCceehHhh-hHHHhhcCCCeEEEEEeC--CCC--eeec-CEEEEeecccccceE
Confidence 457899998665 677777645579999886 465 4667 889999998755444
No 157
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=36.76 E-value=66 Score=38.70 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=39.9
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-------cC---------CeEEEEEeccEEEEccCCCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYIN-------SQ---------GKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-------~~---------G~~~~V~ArKeVILAAGAIe 169 (749)
+..|.++++++.+.+|+.+++++++||++.. .+ |....+.+ ..||+|.|..-
T Consensus 517 ~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~-D~Vi~AiG~~p 584 (654)
T PRK12769 517 REEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPA-DAVIMAFGFNP 584 (654)
T ss_pred HHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEEC-CEEEECccCCC
Confidence 4568999999999999876568999999742 12 34567888 99999999543
No 158
>PRK08244 hypothetical protein; Provisional
Probab=35.78 E-value=92 Score=35.76 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=38.0
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
..|...++..+.+|+.++.|+.+..++ +.+ .|.+.+.+| ..+++| +.||.|.|+-
T Consensus 104 ~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v-~v~~~~~~g-~~~i~a-~~vVgADG~~ 158 (493)
T PRK08244 104 KVLEEHARSLGVEIFRGAEVLAVRQDG-DGV-EVVVRGPDG-LRTLTS-SYVVGADGAG 158 (493)
T ss_pred HHHHHHHHHcCCeEEeCCEEEEEEEcC-CeE-EEEEEeCCc-cEEEEe-CEEEECCCCC
Confidence 344444445689999999999998763 333 355554345 457888 9999999973
No 159
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=34.54 E-value=1e+02 Score=31.68 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=35.1
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
+|....++.+.+++.++.|.++..+++ ++ .|.+. ++ ...++| +.||+|.|+-
T Consensus 96 ~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~-~~~~~--~~-~~~~~a-~~vv~a~G~~ 147 (295)
T TIGR02032 96 QLAERAQEAGAELRLGTTVLDVEIHDD-RV-VVIVR--GG-EGTVTA-KIVIGADGSR 147 (295)
T ss_pred HHHHHHHHcCCEEEeCcEEeeEEEeCC-EE-EEEEc--Cc-cEEEEe-CEEEECCCcc
Confidence 444444567899999999999988743 22 23332 22 246788 8999999965
No 160
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=34.43 E-value=91 Score=34.97 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=39.5
Q ss_pred hhhhhhhhccCCCeEEEcccEEEEEEeC-CCCcEEEEEEEecC-----CeEEEEEeccEEEEccCCC
Q psy3407 108 SKAFLEPAKFRENLIILKNTEVIKILID-SKLKAYGVEYINSQ-----GKICHVNSTREVILSAGAV 168 (749)
Q Consensus 108 a~ayL~pa~~r~NLtIlT~a~V~RIl~d-~ggrAtGV~y~d~~-----G~~~~V~ArKeVILAAGAI 168 (749)
...+|...+.+.|++++.++ |..+... ..+...+|++...+ |+...++| +.||.|.|+-
T Consensus 95 ~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a-~~VIgADG~~ 159 (398)
T TIGR02028 95 LDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEV-DAVIGADGAN 159 (398)
T ss_pred HHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEe-CEEEECCCcc
Confidence 34456554556789998885 6666543 23456677775433 66678899 9999998863
No 161
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=34.15 E-value=1.1e+02 Score=34.87 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=40.0
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
+....++.|++|++++.|.++.-+ ++. ..|.+...+|....+.+ ..||+|.|..-...+
T Consensus 219 l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~~~g~~~~i~~-D~vi~a~G~~pn~~~ 277 (466)
T PRK07818 219 IAKQYKKLGVKILTGTKVESIDDN-GSK-VTVTVSKKDGKAQELEA-DKVLQAIGFAPRVEG 277 (466)
T ss_pred HHHHHHHCCCEEEECCEEEEEEEe-CCe-EEEEEEecCCCeEEEEe-CEEEECcCcccCCCC
Confidence 333445678999999999999754 232 33455423566567888 999999997644443
No 162
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=33.44 E-value=79 Score=38.00 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=39.4
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEEEEEEEec----------------CCeEEEEEeccEEEEccCCCC
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAYGVEYINS----------------QGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~----------------~G~~~~V~ArKeVILAAGAIe 169 (749)
..|+++++.+.+.+|+.+++++++||++... .|.++.+.+ ..||+|.|..-
T Consensus 501 ~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~a-D~Vi~AiG~~p 567 (639)
T PRK12809 501 EEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPA-DVLIMAFGFQA 567 (639)
T ss_pred HcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEEC-CEEEECcCCCC
Confidence 5689999999999998765678999876321 234567888 89999999553
No 163
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=32.35 E-value=2.2e+02 Score=25.89 Aligned_cols=82 Identities=24% Similarity=0.317 Sum_probs=51.4
Q ss_pred cccCceeEEecCC-CCCCcceeeeccceEEeecC-CCCCCc-------eeeEEeccchhhh---cCCCceeEEEecccce
Q psy3407 550 FRSGNLMYKINDK-SAWTPGFVNLQNGILTVKEA-PNSPKN-------ISVIQCHSFSQVY---DKSRPYTFKVNFNPYS 617 (749)
Q Consensus 550 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 617 (749)
.+.|-|+ |+..+ ..|.|=++=|.|.+|-.-.. +....+ |.+-+| ||- ++..|++|.|.-.-=+
T Consensus 3 ikeG~L~-K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~----~v~~~~~~~~~~~F~I~~~~rs 77 (101)
T cd01219 3 LKEGSVL-KISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGM----QVCEGDNLERPHSFLVSGKQRC 77 (101)
T ss_pred ccceEEE-EEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccE----EEEeCCCCCcCceEEEecCCcE
Confidence 3556665 66554 47888888888887655331 211111 222222 222 4568999999877767
Q ss_pred EEEEecCChhhhhHHHHhee
Q psy3407 618 FVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~ 637 (749)
|+++| +.+++--+|+..|-
T Consensus 78 f~l~A-~s~eEk~~W~~ai~ 96 (101)
T cd01219 78 LELQA-RTQKEKNDWVQAIF 96 (101)
T ss_pred EEEEc-CCHHHHHHHHHHHH
Confidence 76655 78888899998763
No 164
>PRK07045 putative monooxygenase; Reviewed
Probab=32.12 E-value=1.1e+02 Score=33.54 Aligned_cols=48 Identities=19% Similarity=0.139 Sum_probs=34.5
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
.+.+|.+++.++.|..|..++++.++.|.+. +|+ ++++ +.||-|-|+-
T Consensus 117 ~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~--~g~--~~~~-~~vIgADG~~ 164 (388)
T PRK07045 117 DGLPNVRLRFETSIERIERDADGTVTSVTLS--DGE--RVAP-TVLVGADGAR 164 (388)
T ss_pred hcCCCeeEEeCCEEEEEEECCCCcEEEEEeC--CCC--EEEC-CEEEECCCCC
Confidence 4467899999999999998755556677763 564 5666 6666666643
No 165
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=31.43 E-value=89 Score=36.16 Aligned_cols=47 Identities=21% Similarity=0.157 Sum_probs=36.1
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
+..+.++++++.|.+|+.++++++++|+.. +|+ +++| +.||.....+
T Consensus 243 a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~--~Ge--~i~a-~~VV~~~s~~ 289 (443)
T PTZ00363 243 AIYGGTYMLNTPVDEVVFDENGKVCGVKSE--GGE--VAKC-KLVICDPSYF 289 (443)
T ss_pred HHcCcEEEcCCeEEEEEEcCCCeEEEEEEC--CCc--EEEC-CEEEECcccc
Confidence 456789999999999999866788888774 464 4677 7788766644
No 166
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=30.26 E-value=1.3e+02 Score=32.66 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=30.8
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCC
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGA 167 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGA 167 (749)
.+|++++.++.|+.|..++ +.+ .|.+ .+|. .++| +.||.|.|+
T Consensus 118 ~~gv~~~~~~~v~~i~~~~-~~~-~v~~--~~g~--~~~a-d~vV~AdG~ 160 (382)
T TIGR01984 118 LTNIQLYCPARYKEIIRNQ-DYV-RVTL--DNGQ--QLRA-KLLIAADGA 160 (382)
T ss_pred CCCcEEEcCCeEEEEEEcC-CeE-EEEE--CCCC--EEEe-eEEEEecCC
Confidence 3689999999999998763 322 2433 2454 5777 889999994
No 167
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=30.00 E-value=1.3e+02 Score=33.87 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=42.1
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
+....++.++++++++.|.+|.- ++++.+|.. ++. .+.+ +.||+|.|..-...+|..+|+
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~---~~~--~i~~-d~vi~a~G~~p~~~~l~~~gl 256 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIG--EDKVEGVVT---DKG--EYEA-DVVIVATGVKPNTEFLEDTGL 256 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEe---CCC--EEEc-CEEEECcCCCcCHHHHHhcCc
Confidence 33344567899999999999953 345555543 333 3777 899999997766677777776
No 168
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=29.63 E-value=1.2e+02 Score=34.42 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=37.7
Q ss_pred hhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH
Q psy3407 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
...++.++++++++.|.+|..+ +++++ |+. .+|...++.+ ..||+|.|..-...
T Consensus 219 ~~l~~~gi~i~~~~~v~~i~~~-~~~v~-v~~--~~g~~~~i~~-D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 219 KALKKKGVKILTNTKVTAVEKN-DDQVV-YEN--KGGETETLTG-EKVLVAVGRKPNTE 272 (461)
T ss_pred HHHHHcCCEEEeCCEEEEEEEe-CCEEE-EEE--eCCcEEEEEe-CEEEEecCCcccCC
Confidence 3345668999999999999876 33333 332 2554456777 89999999765555
No 169
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=28.84 E-value=1.5e+02 Score=37.69 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=48.1
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
.++.+++|++++.|.++.-+ +++.+|++...+|...++.+ ..|+++.|..-...|+...|.
T Consensus 361 L~~~GV~i~~~~~v~~i~g~--~~v~~V~l~~~~g~~~~i~~-D~V~va~G~~Pnt~L~~~lg~ 421 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEGG--KRVSGVAVARNGGAGQRLEA-DALAVSGGWTPVVHLFSQRGG 421 (985)
T ss_pred HHHcCCEEEcCCeEEEEecC--CcEEEEEEEecCCceEEEEC-CEEEEcCCcCchhHHHHhcCC
Confidence 45678999999999998643 57889988743455567888 899999998888888877764
No 170
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=28.22 E-value=1.3e+02 Score=34.28 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=38.0
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCCh
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSP 171 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTP 171 (749)
.+...++..|+++++++.|++|.-++ ....|++.. ++...++.+ +.||+|.|..-..
T Consensus 212 ~l~~~l~~~gV~i~~~~~V~~i~~~~--~~~~v~~~~-~~~~~~i~~-D~ViiA~G~~p~~ 268 (463)
T TIGR02053 212 AVEEALAEEGIEVVTSAQVKAVSVRG--GGKIITVEK-PGGQGEVEA-DELLVATGRRPNT 268 (463)
T ss_pred HHHHHHHHcCCEEEcCcEEEEEEEcC--CEEEEEEEe-CCCceEEEe-CEEEEeECCCcCC
Confidence 34344456789999999999997652 234455543 333456788 8899999965333
No 171
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=28.21 E-value=1.4e+02 Score=33.02 Aligned_cols=48 Identities=10% Similarity=-0.032 Sum_probs=34.0
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGA 167 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGA 167 (749)
...|.+++.++.|+++.-. ++....|++.. +|+..+++| +.||-|-|+
T Consensus 114 ~~~gv~v~~~~~v~~i~~~-~~~~~~V~~~~-~G~~~~i~a-d~vVgADG~ 161 (392)
T PRK08243 114 LAAGGPIRFEASDVALHDF-DSDRPYVTYEK-DGEEHRLDC-DFIAGCDGF 161 (392)
T ss_pred HhCCCeEEEeeeEEEEEec-CCCceEEEEEc-CCeEEEEEe-CEEEECCCC
Confidence 4568999999999998752 22344577744 787788998 766666664
No 172
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=28.08 E-value=2.7e+02 Score=24.52 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=20.0
Q ss_pred CCceeEEEecccceEEEEecCChhhhhHHHHhe
Q psy3407 604 SRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (749)
++.+.|.+.-+ --...|.|+++++.-+|++.|
T Consensus 66 ~~~~~f~i~t~-~r~~~~~a~s~~e~~~Wi~ai 97 (101)
T cd01235 66 SRKGFFDLKTS-KRTYNFLAENINEAQRWKEKI 97 (101)
T ss_pred CCceEEEEEeC-CceEEEECCCHHHHHHHHHHH
Confidence 34556665432 233446688888888888765
No 173
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=27.80 E-value=1.4e+02 Score=34.12 Aligned_cols=58 Identities=10% Similarity=0.154 Sum_probs=38.9
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
+...+++.|++|++++.|.+|..+.++++..+.. . +|...++.+ ..||+|.|..-...
T Consensus 227 l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~-~-~g~~~~i~~-D~vi~a~G~~p~~~ 284 (472)
T PRK05976 227 VARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAE-H-NGEEKTLEA-DKVLVSVGRRPNTE 284 (472)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEE-e-CCceEEEEe-CEEEEeeCCccCCC
Confidence 3334456789999999999997621233443333 2 566667888 88999999764443
No 174
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=27.00 E-value=1.6e+02 Score=31.76 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=34.2
Q ss_pred hhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCC
Q psy3407 109 KAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGA 167 (749)
Q Consensus 109 ~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGA 167 (749)
..++..+.+.+|.+|+.++.|++|..++ +.+ .|++ .+|. .+.+ +.||.|.|+
T Consensus 110 ~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~-~v~~--~~g~--~~~~-~~vi~adG~ 161 (385)
T TIGR01988 110 QALWERLQEYPNVTLLCPARVVELPRHS-DHV-ELTL--DDGQ--QLRA-RLLVGADGA 161 (385)
T ss_pred HHHHHHHHhCCCcEEecCCeEEEEEecC-Cee-EEEE--CCCC--EEEe-eEEEEeCCC
Confidence 3334334455679999999999998763 333 2443 3564 3677 778888885
No 175
>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.
Probab=26.46 E-value=35 Score=25.44 Aligned_cols=16 Identities=44% Similarity=0.694 Sum_probs=11.6
Q ss_pred HHHHhhccCCceeehh
Q psy3407 409 VFKVLNKYGEPVMLFL 424 (749)
Q Consensus 409 ~~~~~~~~~~~~~~~~ 424 (749)
|.+.|.+.|||+.||=
T Consensus 1 V~~~LR~lgePi~lFG 16 (30)
T PF08799_consen 1 VRRRLRELGEPITLFG 16 (30)
T ss_dssp HHHHHHHCT--SCETT
T ss_pred ChHHHHhcCCChhhhC
Confidence 4678899999999984
No 176
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=26.46 E-value=89 Score=33.28 Aligned_cols=40 Identities=23% Similarity=0.134 Sum_probs=27.8
Q ss_pred CeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccC
Q psy3407 120 NLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAG 166 (749)
Q Consensus 120 NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAG 166 (749)
+.+|++++.|++|..++ ++++ |.+. +|+ ++.| +.||+|+.
T Consensus 223 g~~i~l~~~V~~I~~~~-~~v~-v~~~--~g~--~~~a-d~VI~a~p 262 (450)
T PF01593_consen 223 GGEIRLNTPVTRIERED-GGVT-VTTE--DGE--TIEA-DAVISAVP 262 (450)
T ss_dssp GGGEESSEEEEEEEEES-SEEE-EEET--TSS--EEEE-SEEEE-S-
T ss_pred CceeecCCcceeccccc-cccc-cccc--cce--EEec-ceeeecCc
Confidence 45899999999999983 4443 4443 565 6777 88999866
No 177
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=25.74 E-value=95 Score=26.53 Aligned_cols=35 Identities=23% Similarity=0.145 Sum_probs=26.5
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYIN 147 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d 147 (749)
++....++.|+++++++.|.+|.-++++ ++ |.+.|
T Consensus 45 ~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~ 79 (80)
T PF00070_consen 45 ILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLED 79 (80)
T ss_dssp HHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEET
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEec
Confidence 4444455669999999999999988545 66 77753
No 178
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=25.50 E-value=1.5e+02 Score=32.84 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=37.2
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT 170 (749)
+.+.+|++++.++.|+.+..+ +..++ |.+.. +|+ +++| +-||-|=| ++|
T Consensus 114 ~~~~~~v~~~~~~~v~~~~~~-~~~v~-v~l~~-dG~--~~~a-~llVgADG-~~S 162 (387)
T COG0654 114 ARALPNVTLRFGAEVEAVEQD-GDGVT-VTLSF-DGE--TLDA-DLLVGADG-ANS 162 (387)
T ss_pred HhhCCCcEEEcCceEEEEEEc-CCceE-EEEcC-CCc--EEec-CEEEECCC-Cch
Confidence 345788999999999999998 45677 77765 676 7888 77777666 444
No 179
>PRK08163 salicylate hydroxylase; Provisional
Probab=25.46 E-value=1.5e+02 Score=32.64 Aligned_cols=54 Identities=20% Similarity=0.157 Sum_probs=35.2
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCCh
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSP 171 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTP 171 (749)
++..+.+.++.+++.++.|+.+..++ +. |.+...+|+ +++| +.||.|.|+-...
T Consensus 115 L~~~~~~~~~v~~~~~~~v~~i~~~~-~~---v~v~~~~g~--~~~a-d~vV~AdG~~S~~ 168 (396)
T PRK08163 115 LLEAVLDHPLVEFRTSTHVVGIEQDG-DG---VTVFDQQGN--RWTG-DALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHhcCCcEEEeCCEEEEEecCC-Cc---eEEEEcCCC--EEec-CEEEECCCcChHH
Confidence 33334445679999999999998763 32 333333554 4677 8899998865443
No 180
>PRK11445 putative oxidoreductase; Provisional
Probab=25.11 E-value=2e+02 Score=31.57 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=38.6
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT 170 (749)
.+|... ...+++++.++.|..+..+++ . ..|.+.. +|...+++| +.||.|.|+--.
T Consensus 103 ~~L~~~-~~~gv~v~~~~~v~~i~~~~~-~-~~v~~~~-~g~~~~i~a-~~vV~AdG~~S~ 158 (351)
T PRK11445 103 LWLKSL-IPASVEVYHNSLCRKIWREDD-G-YHVIFRA-DGWEQHITA-RYLVGADGANSM 158 (351)
T ss_pred HHHHHH-HhcCCEEEcCCEEEEEEEcCC-E-EEEEEec-CCcEEEEEe-CEEEECCCCCcH
Confidence 344432 346799999999999987633 2 3355543 676667888 999999996543
No 181
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=25.04 E-value=2.4e+02 Score=25.91 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=22.5
Q ss_pred CceeEEEecccceEEEEecCChhhhhHHHHhe
Q psy3407 605 RPYTFKVNFNPYSFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (749)
+.|.|+|.-.--.|.+ .|++|.+.-+|++.|
T Consensus 73 ~~~~F~i~t~~r~~yl-~A~s~~er~~WI~ai 103 (106)
T cd01238 73 FKYPFQVVHDEGTLYV-FAPTEELRKRWIKAL 103 (106)
T ss_pred cCccEEEEeCCCeEEE-EcCCHHHHHHHHHHH
Confidence 4678888764334554 488999999998865
No 182
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=24.99 E-value=59 Score=36.84 Aligned_cols=55 Identities=13% Similarity=-0.017 Sum_probs=44.0
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT 170 (749)
|....++.+-.++++-.|.+..+. ++++++|..+ ++....++| +++|||.|++-|
T Consensus 264 L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~tr--n~~diP~~a-~~~VLAsGsffs 318 (421)
T COG3075 264 LQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYTR--NHADIPLRA-DFYVLASGSFFS 318 (421)
T ss_pred HHHHHHHcCceEecCCceeeeeee-CCeEEEEEec--ccccCCCCh-hHeeeecccccc
Confidence 333345677889999999999998 6899998876 666778899 999999997744
No 183
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=24.68 E-value=1.4e+02 Score=33.66 Aligned_cols=54 Identities=31% Similarity=0.394 Sum_probs=37.9
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
.|....++.+.++.+++.|++|..+ ++ ...|+. ++. .+.| +.||+|+|+...|+
T Consensus 110 ~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~---~~~--~i~a-d~VIlAtG~~s~p~ 163 (400)
T TIGR00275 110 ALLNELKELGVEILTNSKVKSIKKD-DN-GFGVET---SGG--EYEA-DKVILATGGLSYPQ 163 (400)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEE---CCc--EEEc-CEEEECCCCcccCC
Confidence 3434455678999999999999765 23 334544 333 4677 89999999987764
No 184
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=24.32 E-value=1.8e+02 Score=32.21 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=36.7
Q ss_pred hhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe----cCCeEEEEEeccEEEEccCC
Q psy3407 108 SKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYIN----SQGKICHVNSTREVILSAGA 167 (749)
Q Consensus 108 a~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d----~~G~~~~V~ArKeVILAAGA 167 (749)
...+|...+.+.+++++.. .|++|..++ +. ..|++.+ .+|+..+++| +.||.|.|+
T Consensus 94 fd~~L~~~a~~~G~~v~~~-~v~~v~~~~-~~-~~v~~~~~~~~~~~~~~~i~a-~~VI~AdG~ 153 (388)
T TIGR02023 94 FDSYLRERAQKAGAELIHG-LFLKLERDR-DG-VTLTYRTPKKGAGGEKGSVEA-DVVIGADGA 153 (388)
T ss_pred HHHHHHHHHHhCCCEEEee-EEEEEEEcC-Ce-EEEEEEeccccCCCcceEEEe-CEEEECCCC
Confidence 3445554444568999765 688887763 33 3466654 1344567888 999999985
No 185
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=24.17 E-value=1.3e+02 Score=34.44 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=32.0
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
++++.+++|+.++.|+.|... + ...|+ ..+| +++| +.||+|+|+.
T Consensus 192 ~a~~~Gv~i~~~t~V~~i~~~--~-~~~v~--t~~g---~v~A-~~VV~Atga~ 236 (460)
T TIGR03329 192 VALELGVEIHENTPMTGLEEG--Q-PAVVR--TPDG---QVTA-DKVVLALNAW 236 (460)
T ss_pred HHHHcCCEEECCCeEEEEeeC--C-ceEEE--eCCc---EEEC-CEEEEccccc
Confidence 345668999999999998742 2 23343 3245 4788 8999999986
No 186
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=23.68 E-value=1.9e+02 Score=31.94 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=44.5
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIG 180 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIG 180 (749)
.+....++.++++++++.|.++..++ + ...|++. +|+ ++.+ +.||+|.|.--.+.++..+|+.
T Consensus 188 ~l~~~l~~~gV~i~~~~~v~~i~~~~-~-~~~v~~~--~g~--~i~~-D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 188 RLQHRLTEMGVHLLLKSQLQGLEKTD-S-GIRATLD--SGR--SIEV-DAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHHHHHHhCCCEEEECCeEEEEEccC-C-EEEEEEc--CCc--EEEC-CEEEECcCCCcchHHHHHCCCC
Confidence 34344556789999999999997652 2 2335442 554 4677 8999999988777788777764
No 187
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=23.41 E-value=4.1e+02 Score=24.42 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=25.1
Q ss_pred CCceeEEEecccceEEEEecCChhhhhHHHHheeeE
Q psy3407 604 SRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIMIS 639 (749)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (749)
..|+.|.+.-..-||+|. |+.+++--+|+++|.-+
T Consensus 62 ~~~~~F~I~~~~ks~~l~-A~s~~Ek~~Wi~~i~~a 96 (99)
T cd01220 62 GVPHCFTIFGGQCAITVA-ASTRAEKEKWLADLSKA 96 (99)
T ss_pred CCceeEEEEcCCeEEEEE-CCCHHHHHHHHHHHHHH
Confidence 446788887666677665 56777888999987543
No 188
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=23.32 E-value=1.8e+02 Score=33.28 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=40.6
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec---------------CCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS---------------QGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~---------------~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
++..|+++++++.+.+|.-+ +++++||++.+. +|...++.+ ..||+|.|..-...|+
T Consensus 321 ~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~-D~vi~a~G~~p~~~l~ 392 (457)
T PRK11749 321 AKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPA-DLVIKAIGQTPNPLIL 392 (457)
T ss_pred HHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEEC-CEEEECccCCCCchhh
Confidence 34578999999999998765 445678877431 244567888 8999999965544444
No 189
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=23.28 E-value=1.7e+02 Score=34.49 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=41.7
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEEEEEEEe-------c-------CCeEEEEEeccEEEEccCCCCChHHHhh-cCC
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAYGVEYIN-------S-------QGKICHVNSTREVILSAGAVGSPQLLML-SGI 179 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-------~-------~G~~~~V~ArKeVILAAGAIeTPrLLL~-SGI 179 (749)
..++++++++.+.+|+-++++++ ||++.. . .|....+.+ ..||+|.|..-.+.+|.. +|+
T Consensus 317 ~~GVki~~~~~~~~i~~~~~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~-D~Vi~A~G~~p~~~~~~~~~gl 391 (564)
T PRK12771 317 REGVEINWLRTPVEIEGDENGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEA-DLVVLAIGQDIDSAGLESVPGV 391 (564)
T ss_pred HcCCEEEecCCcEEEEcCCCCEE-EEEEEEEEecccCCCCCeeecCCceEEEEC-CEEEECcCCCCchhhhhhccCc
Confidence 46899999999999977644444 876532 1 344567888 899999996655555542 444
No 190
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.11 E-value=2e+02 Score=33.44 Aligned_cols=55 Identities=22% Similarity=0.363 Sum_probs=42.5
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCC-CChHHH
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAV-GSPQLL 174 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAI-eTPrLL 174 (749)
.+++.+++.+.|.+++-.++|+ .-+.+... .|+..+++. ..||||.|-= ..|.+|
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~~~~~~~t~~~-D~vIlATGY~~~~P~fL 346 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGDGR-YRLTLRHHETGELETVET-DAVILATGYRRAVPSFL 346 (436)
T ss_pred CCCeeeccccceeeeecCCCce-EEEEEeeccCCCceEEEe-eEEEEecccccCCchhh
Confidence 6789999999999998875555 55666554 577778887 8899999965 566554
No 191
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.91 E-value=1.8e+02 Score=33.34 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=39.2
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
.+...+++.+++|++++.|.+|.-++++ ..+++.+. +|....+.+ ..||+|.|..-....
T Consensus 220 ~l~~~l~~~gV~i~~~~~V~~i~~~~~~--v~v~~~~~~~g~~~~i~~-D~vi~a~G~~pn~~~ 280 (466)
T PRK06115 220 TLQKALTKQGMKFKLGSKVTGATAGADG--VSLTLEPAAGGAAETLQA-DYVLVAIGRRPYTQG 280 (466)
T ss_pred HHHHHHHhcCCEEEECcEEEEEEEcCCe--EEEEEEEcCCCceeEEEe-CEEEEccCCcccccc
Confidence 3444455678999999999999754222 23344321 355566888 899999997644343
No 192
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=22.69 E-value=1e+02 Score=35.64 Aligned_cols=54 Identities=17% Similarity=0.277 Sum_probs=37.9
Q ss_pred hhhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccC
Q psy3407 107 TSKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAG 166 (749)
Q Consensus 107 aa~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAG 166 (749)
....+|...+.+.|++++.++ |..+.+++++.+++|+.. +|+ +++| +-||=|.|
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~--~g~--~i~a-d~~IDASG 208 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLD--DGR--TIEA-DFFIDASG 208 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEET--TSE--EEEE-SEEEE-SG
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEEC--CCC--EEEE-eEEEECCC
Confidence 345577765555689999875 788888777899999885 354 6788 88999888
No 193
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=22.42 E-value=72 Score=30.65 Aligned_cols=45 Identities=27% Similarity=0.481 Sum_probs=35.7
Q ss_pred heeeEEEEcCCcceEEeeccCCCchhhhhHHHHHhhheeecCcchhhhc
Q psy3407 635 DIMISIKINDDKKILVGKFAAPDESQLFDWLQDIMISIKINDDKVISFM 683 (749)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (749)
+--|.||+++|+++++ .+.||-.+-.|...++-..|.. -++++.|
T Consensus 64 ~~CI~ik~k~~~k~vl---t~~d~i~l~qW~~elr~a~r~S-q~ll~~m 108 (116)
T cd01240 64 ENCILLKIRDEKKIVL---TNSDEIELKQWKKELRDAHRES-QQLLQRM 108 (116)
T ss_pred CceEEEEEcCCceEEE---ecCCcHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 3468999999999886 5788889999999988877766 5666554
No 194
>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04.
Probab=22.34 E-value=59 Score=26.24 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=15.8
Q ss_pred hhHHHHHhhccCCceeehh
Q psy3407 406 DNIVFKVLNKYGEPVMLFL 424 (749)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~ 424 (749)
|.-|.+-|...|||++||=
T Consensus 3 d~eV~~~LR~lgePi~lFG 21 (44)
T smart00500 3 DSEVIRRLRELGEPITLFG 21 (44)
T ss_pred HHHHHHHHHHcCCCeeecC
Confidence 4567778999999999994
No 195
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.12 E-value=2.4e+02 Score=32.12 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=38.7
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
+....++.+.++++++.|.+|.-++ +. ..|+..+ +|....+.+ ..||+|.|..-...+
T Consensus 219 l~~~l~~~gV~i~~~~~V~~i~~~~-~~-v~v~~~~-gg~~~~i~~-D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 219 AERALKKRGIKIKTGAKAKKVEQTD-DG-VTVTLED-GGKEETLEA-DYVLVAVGRRPNTEN 276 (462)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeC-CE-EEEEEEe-CCeeEEEEe-CEEEEeeCCccCCCC
Confidence 3333456789999999999997653 22 2344433 355567888 899999997644443
No 196
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.73 E-value=3.8e+02 Score=25.30 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=19.9
Q ss_pred ceeEEEecccceEEEEecCChhhhhHHHHhe
Q psy3407 606 PYTFKVNFNPYSFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (749)
-+.|+| -||---+.+.|++|.+.-+|++-|
T Consensus 89 ~~~~~i-~t~~R~~~l~a~s~~~~~~Wi~~i 118 (121)
T cd01254 89 RHGLKI-TNSNRSLKLKCKSSRKLKQWMASI 118 (121)
T ss_pred ceEEEE-EcCCcEEEEEeCCHHHHHHHHHHH
Confidence 466666 355555666777888888887654
No 197
>PRK06370 mercuric reductase; Validated
Probab=21.24 E-value=2.6e+02 Score=31.88 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=38.0
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
.+...+++.|+++++++.|.+|.-++++ ..|++.. ++....+.+ ..||+|.|..-...
T Consensus 217 ~l~~~l~~~GV~i~~~~~V~~i~~~~~~--~~v~~~~-~~~~~~i~~-D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 217 AVREILEREGIDVRLNAECIRVERDGDG--IAVGLDC-NGGAPEITG-SHILVAVGRVPNTD 274 (463)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEcCCE--EEEEEEe-CCCceEEEe-CEEEECcCCCcCCC
Confidence 3434455678999999999999765322 2444443 233345777 88999999654443
No 198
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=21.23 E-value=2.1e+02 Score=31.91 Aligned_cols=48 Identities=27% Similarity=0.258 Sum_probs=30.2
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAG 166 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAG 166 (749)
.+..++|++++.|+.+..++++ -.-+++.+. .|+...+.+ ..||+|.|
T Consensus 290 g~~~~~l~~~~~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~-D~VilATG 338 (341)
T PF13434_consen 290 GRGRLRLLPNTEVTSAEQDGDG-GVRLTLRHRQTGEEETLEV-DAVILATG 338 (341)
T ss_dssp T---SEEETTEEEEEEEEES-S-SEEEEEEETTT--EEEEEE-SEEEE---
T ss_pred CCCCeEEeCCCEEEEEEECCCC-EEEEEEEECCCCCeEEEec-CEEEEcCC
Confidence 4556999999999999887433 334555553 577778888 99999998
No 199
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=21.10 E-value=87 Score=34.16 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=29.8
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCC
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGA 167 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGA 167 (749)
+.+.+|++++.|++|..++ ++++.+ +.. +|+ .+.| +.||++.-+
T Consensus 209 ~~g~~i~~~~~V~~i~~~~-~~~~~~-~~~-~g~--~~~~-d~vi~a~p~ 252 (419)
T TIGR03467 209 SRGGEVRLGTRVRSIEANA-GGIRAL-VLS-GGE--TLPA-DAVVLAVPP 252 (419)
T ss_pred HcCCEEEcCCeeeEEEEcC-CcceEE-Eec-CCc--cccC-CEEEEcCCH
Confidence 4478999999999999874 444332 222 453 4667 788887553
No 200
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=21.07 E-value=1.8e+02 Score=36.48 Aligned_cols=64 Identities=11% Similarity=0.177 Sum_probs=46.6
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
.+....++.+++|++++.|.+|.-++.+...+|.+. +|+ .+.+ ..||+|.|..-...|+..+|+
T Consensus 192 ~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~--dG~--~i~~-D~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 192 QLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFA--DGS--ELEV-DFIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEEC--CCC--EEEc-CEEEECCCcccCchHHhhcCc
Confidence 344445667899999999999976533456666664 565 4667 899999998777777767775
No 201
>PRK07190 hypothetical protein; Provisional
Probab=21.03 E-value=2.1e+02 Score=33.29 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=35.2
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCC
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGA 167 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGA 167 (749)
..|...++..|++|..++.|+.|..++++ |.+...+|+ +++| +.||.|.|+
T Consensus 113 ~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~----v~v~~~~g~--~v~a-~~vVgADG~ 163 (487)
T PRK07190 113 KLLDDKLKEAGAAVKRNTSVVNIELNQAG----CLTTLSNGE--RIQS-RYVIGADGS 163 (487)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEEcCCe----eEEEECCCc--EEEe-CEEEECCCC
Confidence 34443334558999999999999887432 222222554 6888 999999997
No 202
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=20.82 E-value=2.2e+02 Score=31.41 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=36.2
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
.+..|++++.++.|+.+..++ +.++ |+. .+|. +++| +.||.|.|+- | .+-...|+
T Consensus 123 ~~~~gv~i~~~~~v~~i~~~~-~~v~-v~~--~~g~--~~~a-~~vV~AdG~~-S-~vr~~~g~ 177 (392)
T PRK08773 123 LHAAGVQLHCPARVVALEQDA-DRVR-LRL--DDGR--RLEA-ALAIAADGAA-S-TLRELAGL 177 (392)
T ss_pred HHhCCCEEEcCCeEEEEEecC-CeEE-EEE--CCCC--EEEe-CEEEEecCCC-c-hHHHhhcC
Confidence 445689999999999998763 3332 443 2454 5677 8899998873 3 34333344
No 203
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=20.71 E-value=1.8e+02 Score=33.50 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=43.7
Q ss_pred hhhhhhhcc--CCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcC
Q psy3407 109 KAFLEPAKF--RENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSG 178 (749)
Q Consensus 109 ~ayL~pa~~--r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SG 178 (749)
..|+...++ +-..+|..++.|+.+.++++++.--|.+.+ |...++.| +.||+|+|..+.|.+=-.-|
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~--~~~~~~~a-~~vV~ATG~~~~P~iP~~~G 153 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSD--GGTGELTA-DFVVVATGHLSEPYIPDFAG 153 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcC--CCeeeEec-CEEEEeecCCCCCCCCCCCC
Confidence 345544332 234577777777778888555566666653 33333778 99999999999887655554
No 204
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=20.67 E-value=2.3e+02 Score=36.27 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=43.0
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-------c--------CCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYIN-------S--------QGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-------~--------~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
+..|+++++.+.+.+|..+++++++||++.. . +|....+.+ ..||+|.|-.-.+.++
T Consensus 620 ~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~-D~Vi~AiG~~p~~~~~ 691 (1006)
T PRK12775 620 KEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLEC-DTVIYALGTKANPIIT 691 (1006)
T ss_pred HhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEc-CEEEECCCcCCChhhh
Confidence 4578999999999999876568999998752 1 234457888 8999999976554443
Done!